Animal-Genome cDNA 20110601C-002096


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002096
         (1720 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001013605.1| malate dehydrogenase, mitochondrial [Bos tau...   355   7e-98
Alignment   gi|NP_001106720.1| L-lactate dehydrogenase C isoform 1 [Bos tau...    59   2e-08
Alignment   gi|NP_001039887.2| L-lactate dehydrogenase C isoform 2 [Bos tau...    54   3e-07
Alignment   gi|NP_776525.1| L-lactate dehydrogenase B chain [Bos taurus].         50   5e-06
Alignment   gi|NP_001030352.1| L-lactate dehydrogenase A-like 6B [Bos tauru...    50   6e-06

>ref|NP_001013605.1| malate dehydrogenase, mitochondrial [Bos taurus].
          Length = 278

 Score =  355 bits (911), Expect = 7e-98
 Identities = 177/180 (98%), Positives = 179/180 (99%)
 Frame = +2

Query: 164 SFSTSAQNNAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRA 343
           SFSTSAQNNAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRA
Sbjct: 16  SFSTSAQNNAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRA 75

Query: 344 TVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDA 523
           TVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCP+A
Sbjct: 76  TVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPEA 135

Query: 524 MICIISNPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAELKGLDPARVSVP 703
           MICIISNPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAELK LDPARV+VP
Sbjct: 136 MICIISNPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAELKDLDPARVNVP 195



 Score = 70.5 bits (171), Expect = 4e-12
 Identities = 36/83 (43%), Positives = 41/83 (49%)
 Frame = +1

Query: 655 FCCRAEGFGPGSSQRSRHWRPRREDHHPAHLSVHPEGGLSAGPALXXXXXXXXXXXXXXX 834
           F    +   P      RH RPR E+HHP  L VHP+GG+S GPA                
Sbjct: 180 FVAELKDLDPARVNVPRHRRPRWENHHPLDLPVHPQGGISPGPADHPHRSDPGSWHRGGQ 239

Query: 835 XXXXSRLCHPVHGICRSPVCLLP 903
               S LCHPVHGI  SP+CLLP
Sbjct: 240 GEGRSGLCHPVHGIRWSPLCLLP 262


>ref|NP_001106720.1| L-lactate dehydrogenase C isoform 1 [Bos taurus].
          Length = 332

 Score = 58.5 bits (140), Expect = 2e-08
 Identities = 69/299 (23%), Positives = 122/299 (40%), Gaps = 22/299 (7%)
 Frame = +2

Query: 185  NNAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIA--HTPGVAADLSHIETRA-TVKG 355
            + +K+ ++G +G +G   ++ +    L   L L D+      G   DL H      T K 
Sbjct: 19   SQSKITIVG-TGAVGMACAICILLKDLADELALVDVVTDKLKGETMDLQHGSLFFNTPKI 77

Query: 356  YLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICI 535
              G +          +V+I AG  ++ G +R +L   N  I+ ++  A  Q+ PD  + I
Sbjct: 78   VSGKDYTVSA--NSKLVIITAGARQQEGESRLNLVQRNVDIMKSVIPAIVQNSPDCKMLI 135

Query: 536  ISNPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAELKGLDPARVSVPVIGG 715
            +SNPV+    +T  V+K  G+     I     LD  R    + +  G+ P+     +IG 
Sbjct: 136  VSNPVDI---LTYVVWKLSGLPATRVIGSGCNLDSARFRYLIGQKLGVHPSSCHGWIIGE 192

Query: 716  HAGKTIIPL----------ISQCTPKV--DFPQDQLSTLTGRIQEAGTEVVKAKA----G 847
            H G + +PL          +    PK+  D  +D    +   +  +  E++K K     G
Sbjct: 193  H-GDSSVPLWSGVNVAGVALKSLDPKLGSDSDKDSWKNIHKEVVGSAYEIIKLKGYTSWG 251

Query: 848  AGSATLSMAYA---GARFVFSLVDAMNGKEGVVECSFVKSQETDCPYFSTPLLLGKKGI 1015
             G +   +  +     R V  +   + G  G+ E  F+          S P +LG+ G+
Sbjct: 252  IGLSVTDLVKSILKNLRRVHPVSTMVKGSYGIKEEIFL----------SIPCVLGRNGV 300


>ref|NP_001039887.2| L-lactate dehydrogenase C isoform 2 [Bos taurus].
          Length = 241

 Score = 54.3 bits (129), Expect = 3e-07
 Identities = 50/191 (26%), Positives = 85/191 (44%), Gaps = 3/191 (1%)
 Frame = +2

Query: 185 NNAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIA--HTPGVAADLSHIETRA-TVKG 355
           + +K+ ++G +G +G   ++ +    L   L L D+      G   DL H      T K 
Sbjct: 19  SQSKITIVG-TGAVGMACAICILLKDLADELALVDVVTDKLKGETMDLQHGSLFFNTPKI 77

Query: 356 YLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICI 535
             G +          +V+I AG  ++ G +R +L   N  I+ ++  A  Q+ PD  + I
Sbjct: 78  VSGKDYTVSA--NSKLVIITAGARQQEGESRLNLVQRNVDIMKSVIPAIVQNSPDCKMLI 135

Query: 536 ISNPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAELKGLDPARVSVPVIGG 715
           +SNPV+    +T  V+K  G+     I     LD  R    + +  G+ P+     +IG 
Sbjct: 136 VSNPVDI---LTYVVWKLSGLPATRVIGSGCNLDSARFRYLIGQKLGVHPSSCHGWIIGE 192

Query: 716 HAGKTIIPLIS 748
           H G + +PL S
Sbjct: 193 H-GDSSVPLWS 202


>ref|NP_776525.1| L-lactate dehydrogenase B chain [Bos taurus].
          Length = 334

 Score = 50.4 bits (119), Expect = 5e-06
 Identities = 42/184 (22%), Positives = 75/184 (40%), Gaps = 2/184 (1%)
 Frame = +2

Query: 188 NAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTP--GVAADLSHIETRATVKGYL 361
           N K+ V+G  G +G   ++ +    L   L L D+      G   DL H          +
Sbjct: 21  NNKITVVGV-GQVGMACAISILGKSLTDELALVDVLEDKLKGEMMDLQHGSLFLQTPKIV 79

Query: 362 GPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIIS 541
             +          +VV+ AGV ++ G +R +L   N  +   +     ++ P  +I ++S
Sbjct: 80  ADKDY-SVTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPACIIIVVS 138

Query: 542 NPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAELKGLDPARVSVPVIGGHA 721
           NPV+    +T   +K  G+     I     LD  R    +AE  G+ P+     ++G H 
Sbjct: 139 NPVDI---LTYVTWKLSGLPKHRVIGSGCNLDSARFRYLMAEKLGIHPSSCHGWILGEHG 195

Query: 722 GKTI 733
             ++
Sbjct: 196 DSSV 199


>ref|NP_001030352.1| L-lactate dehydrogenase A-like 6B [Bos taurus].
          Length = 381

 Score = 50.1 bits (118), Expect = 6e-06
 Identities = 71/323 (21%), Positives = 128/323 (39%), Gaps = 23/323 (7%)
 Frame = +2

Query: 188  NAKVAVLGA-SGGIGQPLSLLLKNSPLVSRLTLYDI--AHTPGVAADLSHIETRATVKGY 358
            N+K++++G  S G+   +S+LLK   L   L L D+      G   DL H      +   
Sbjct: 69   NSKISIVGTGSVGMACAVSILLKG--LSDELALVDVDEGRLKGETMDLQHGSLFVKMPNI 126

Query: 359  LGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICII 538
            +            ++V+I AG  ++ G TR +L   N  I   + ++  Q+ P   + ++
Sbjct: 127  VSSRDYV-VTANSNLVIITAGARQEKGETRLNLVQRNVAIFKLMMSSIVQYSPRCKLIVV 185

Query: 539  SNPVNSTIPITAEVFKKHGVYNPNKIFGV-TTLDIVRANAFVAELKGLDPARVSVPVIGG 715
            SNPV+    I   V  K   +  N++ G    LD  R    + +   +        ++G 
Sbjct: 186  SNPVD----ILTYVAWKLSAFPQNRVIGSGCNLDTARFRFLIGQRLSIHSESCHGWILGE 241

Query: 716  HAGKTIIPLIS------------QCTPKVDFPQDQLSTLTGRIQEAGTEVVKAKA----- 844
            H G + +P+ S                  D   +Q   +   +  +  E++K K      
Sbjct: 242  H-GDSSVPVWSGVNIAGVPLKELNLDIGTDKDPEQWKNVHKDVVASAYEIIKMKGYTYWA 300

Query: 845  -GAGSATLSMA-YAGARFVFSLVDAMNGKEGVVECSFVKSQETDCPYFSTPLLLGKKGIE 1018
             G   A L+ +     R V  +   + G  G+ E  F+          S P +LG+ GI 
Sbjct: 301  IGLSVADLTESILKNLRRVHPVSTRIKGLYGINEEVFL----------SVPCILGESGIT 350

Query: 1019 KNLGIGKISPFEEKMIAEAIPEL 1087
              + + K++P EE  + ++   L
Sbjct: 351  DLIKV-KLAPEEEARLQKSAKTL 372


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 67,956,426
Number of extensions: 1919045
Number of successful extensions: 7368
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 7344
Number of HSP's successfully gapped: 6
Length of query: 573
Length of database: 17,681,374
Length adjustment: 108
Effective length of query: 465
Effective length of database: 14,107,870
Effective search space: 6560159550
Effective search space used: 6560159550
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002096
         (1720 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_849944.1| PREDICTED: similar to malate dehydrogenase, mit...   613   e-175
Alignment   gi|XP_539718.1| PREDICTED: similar to malate dehydrogenase 2, N...   553   e-157
Alignment   gi|XP_851105.1| PREDICTED: similar to malate dehydrogenase, mit...   447   e-136
Alignment   gi|XP_849858.1| PREDICTED: similar to malate dehydrogenase, mit...   434   e-121
Alignment   gi|XP_850818.1| PREDICTED: similar to mitochondrial malate dehy...   319   e-100
Alignment   gi|XP_852803.1| PREDICTED: similar to Malate dehydrogenase, mit...   267   2e-71
Alignment   gi|XP_851705.1| PREDICTED: similar to malate dehydrogenase, mit...   213   4e-55
Alignment   gi|XP_534085.2| PREDICTED: similar to lactate dehydrogenase C [...    63   1e-09
Alignment   gi|XP_848921.1| PREDICTED: similar to L-lactate dehydrogenase B...    55   2e-07
Alignment   gi|XP_534868.1| PREDICTED: similar to L-lactate dehydrogenase B...    54   6e-07

>ref|XP_849944.1| PREDICTED: similar to malate dehydrogenase, mitochondrial [Canis
            familiaris].
          Length = 338

 Score =  613 bits (1580), Expect = e-175
 Identities = 306/323 (94%), Positives = 315/323 (97%)
 Frame = +2

Query: 164  SFSTSAQNNAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRA 343
            SFSTSAQNNAKVAVLGASGGIGQPL+LLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRA
Sbjct: 16   SFSTSAQNNAKVAVLGASGGIGQPLALLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRA 75

Query: 344  TVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDA 523
            TVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNA+IVATLTAACAQHCP+A
Sbjct: 76   TVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNASIVATLTAACAQHCPEA 135

Query: 524  MICIISNPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAELKGLDPARVSVP 703
            MIC+ISNPVNSTIPI  EVFKKHG Y+PNKIFGVTTLDIVRAN F+AELKGLDPARV+VP
Sbjct: 136  MICVISNPVNSTIPIATEVFKKHGAYDPNKIFGVTTLDIVRANTFIAELKGLDPARVNVP 195

Query: 704  VIGGHAGKTIIPLISQCTPKVDFPQDQLSTLTGRIQEAGTEVVKAKAGAGSATLSMAYAG 883
            VIGGHAGKTIIPLISQCTPKVD PQDQL+ +TGRIQEAGTEVVKAKAGAGSATLSMAYAG
Sbjct: 196  VIGGHAGKTIIPLISQCTPKVDLPQDQLTAVTGRIQEAGTEVVKAKAGAGSATLSMAYAG 255

Query: 884  ARFVFSLVDAMNGKEGVVECSFVKSQETDCPYFSTPLLLGKKGIEKNLGIGKISPFEEKM 1063
            ARFVFSLVDAMNGKEGVVECSFVKSQE DC YFSTPLLLGKKGIEKNLGIGKISPFEEKM
Sbjct: 256  ARFVFSLVDAMNGKEGVVECSFVKSQEADCAYFSTPLLLGKKGIEKNLGIGKISPFEEKM 315

Query: 1064 IAEAIPELKASIKKGEEFVKNMK 1132
            IAEAIPELKASIKKGEEFVKNMK
Sbjct: 316  IAEAIPELKASIKKGEEFVKNMK 338


>ref|XP_539718.1| PREDICTED: similar to malate dehydrogenase 2, NAD (mitochondrial)
            [Canis familiaris].
          Length = 328

 Score =  553 bits (1424), Expect = e-157
 Identities = 282/323 (87%), Positives = 295/323 (91%)
 Frame = +2

Query: 164  SFSTSAQNNAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRA 343
            S STSAQNNAKVAVLGASGGI Q          +VS LTLYDIAHTP VAADLSHIETRA
Sbjct: 16   SVSTSAQNNAKVAVLGASGGIRQ----------IVSCLTLYDIAHTPRVAADLSHIETRA 65

Query: 344  TVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDA 523
            TVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFN NA+IV TLTAACAQHCP+A
Sbjct: 66   TVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNINASIVDTLTAACAQHCPEA 125

Query: 524  MICIISNPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAELKGLDPARVSVP 703
            +IC+ISNPVNSTIPI  EVFKKHG Y+ NKIFGVTTLDIVRAN F AELKGLDPAR +VP
Sbjct: 126  VICVISNPVNSTIPIATEVFKKHGAYDSNKIFGVTTLDIVRANTFTAELKGLDPARANVP 185

Query: 704  VIGGHAGKTIIPLISQCTPKVDFPQDQLSTLTGRIQEAGTEVVKAKAGAGSATLSMAYAG 883
            VIGGHAGKTIIPLISQCTPKVD PQDQL+ +TG+IQEAGTEVVKAKAGAGSATLSMAYAG
Sbjct: 186  VIGGHAGKTIIPLISQCTPKVDLPQDQLTAVTGQIQEAGTEVVKAKAGAGSATLSMAYAG 245

Query: 884  ARFVFSLVDAMNGKEGVVECSFVKSQETDCPYFSTPLLLGKKGIEKNLGIGKISPFEEKM 1063
            ARFVFSLVDA+NGKEG+VECSFVKSQ+TD  YFSTPLLL KKGIEKNLGIGKISPFEEKM
Sbjct: 246  ARFVFSLVDAVNGKEGIVECSFVKSQDTDSDYFSTPLLLEKKGIEKNLGIGKISPFEEKM 305

Query: 1064 IAEAIPELKASIKKGEEFVKNMK 1132
            IAEAIPELKASIKKGEEFVKNMK
Sbjct: 306  IAEAIPELKASIKKGEEFVKNMK 328


>ref|XP_851105.1| PREDICTED: similar to malate dehydrogenase, mitochondrial [Canis
            familiaris].
          Length = 369

 Score =  447 bits (1150), Expect(2) = e-136
 Identities = 220/250 (88%), Positives = 231/250 (92%)
 Frame = +2

Query: 383  CLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNPVNSTI 562
            CLKGCD VV PAGVPRKPGMTRDDL +TNA+ VAT TAACAQHCP+A+IC+ISNPVNSTI
Sbjct: 120  CLKGCDAVVTPAGVPRKPGMTRDDLLSTNASAVATWTAACAQHCPEAIICVISNPVNSTI 179

Query: 563  PITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAELKGLDPARVSVPVIGGHAGKTIIPL 742
            PI  EVFKKHG Y+P KIFG TTLDIVRAN F AELKGLDPARV+VPV GGHAGKTI+PL
Sbjct: 180  PIATEVFKKHGAYDPKKIFGATTLDIVRANTFTAELKGLDPARVNVPVTGGHAGKTIVPL 239

Query: 743  ISQCTPKVDFPQDQLSTLTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFVFSLVDAMNG 922
            ISQCTPKVD PQD L+ +TGRIQEAGTEVVKAKA AGSATLSMAYAGARFVFSLVDAMNG
Sbjct: 240  ISQCTPKVDLPQDPLTAVTGRIQEAGTEVVKAKAAAGSATLSMAYAGARFVFSLVDAMNG 299

Query: 923  KEGVVECSFVKSQETDCPYFSTPLLLGKKGIEKNLGIGKISPFEEKMIAEAIPELKASIK 1102
            KEGVVECSFVK+QE DC YFSTPLLLGKKGIEKNLGIGKISPFEEKMIAEAIPELKASIK
Sbjct: 300  KEGVVECSFVKAQEADCAYFSTPLLLGKKGIEKNLGIGKISPFEEKMIAEAIPELKASIK 359

Query: 1103 KGEEFVKNMK 1132
            KGEEFVKNMK
Sbjct: 360  KGEEFVKNMK 369



 Score = 57.0 bits (136), Expect(2) = e-136
 Identities = 36/71 (50%), Positives = 42/71 (59%)
 Frame = +1

Query: 181 PEQCQGSRAGGFRRNRAAPFASPEKQPLGEPPDPLRYRAHTRSGRGSEPHRDQSDCERLP 360
           P     S A GFR N AAP A+ ++QPLG          H RSGR SEPHRDQS+ ER P
Sbjct: 54  PRTSSSSCAWGFRGNWAAPCAASQEQPLGSRLSLWILLIH-RSGRRSEPHRDQSNRERPP 112

Query: 361 RT*AAARLPEG 393
           +T AAA   +G
Sbjct: 113 QTCAAAGCLKG 123


>ref|XP_849858.1| PREDICTED: similar to malate dehydrogenase, mitochondrial [Canis
            familiaris].
          Length = 259

 Score =  434 bits (1115), Expect = e-121
 Identities = 220/271 (81%), Positives = 238/271 (87%)
 Frame = +2

Query: 320  LSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAA 499
            +SHIETRATVKG+LGPEQLPD LKGCD VV PAGVPRKPG+TRDDL +T A+        
Sbjct: 1    MSHIETRATVKGHLGPEQLPDGLKGCDAVVTPAGVPRKPGVTRDDLLSTGAS-------- 52

Query: 500  CAQHCPDAMICIISNPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAELKGL 679
               HCP+A IC+ISNPVNSTIP+  EVFKKHG Y+PNKIFGVTTLDIVRAN F+AELKGL
Sbjct: 53   ---HCPEARICVISNPVNSTIPMATEVFKKHGAYDPNKIFGVTTLDIVRANTFIAELKGL 109

Query: 680  DPARVSVPVIGGHAGKTIIPLISQCTPKVDFPQDQLSTLTGRIQEAGTEVVKAKAGAGSA 859
            DPARV+VPV GGHAGKTI+PL+SQ TPKVD PQD L+ + GRIQEAG+EVVKAKA AGSA
Sbjct: 110  DPARVNVPVTGGHAGKTIVPLMSQRTPKVDLPQDPLTAVAGRIQEAGSEVVKAKAAAGSA 169

Query: 860  TLSMAYAGARFVFSLVDAMNGKEGVVECSFVKSQETDCPYFSTPLLLGKKGIEKNLGIGK 1039
            TLSMAYAGARFVFSLVDAMNGKEGV ECSFVKS+E DC YFSTPLLLGKKGIEKNLGIGK
Sbjct: 170  TLSMAYAGARFVFSLVDAMNGKEGVGECSFVKSREADCAYFSTPLLLGKKGIEKNLGIGK 229

Query: 1040 ISPFEEKMIAEAIPELKASIKKGEEFVKNMK 1132
            ISPFEE MIAEAI ELKASI+KGEEFVKNMK
Sbjct: 230  ISPFEE-MIAEAIAELKASIEKGEEFVKNMK 259


>ref|XP_850818.1| PREDICTED: similar to mitochondrial malate dehydrogenase precursor
           [Canis familiaris].
          Length = 278

 Score =  319 bits (818), Expect(2) = e-100
 Identities = 153/184 (83%), Positives = 170/184 (92%)
 Frame = +2

Query: 311 AADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATL 490
           AADLSHIETRATVKG+LGP QLP CLKGCD VVIPAGVPRKPG+TRDDLF+T A++VAT 
Sbjct: 40  AADLSHIETRATVKGHLGPAQLPGCLKGCDAVVIPAGVPRKPGVTRDDLFSTGASVVATR 99

Query: 491 TAACAQHCPDAMICIISNPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAEL 670
           TAACAQHCP+AMIC+ISNPVNSTIP+  EVFKKHG Y+P+KIFGVTTLDIVRAN F+AEL
Sbjct: 100 TAACAQHCPEAMICVISNPVNSTIPMATEVFKKHGAYDPSKIFGVTTLDIVRANTFIAEL 159

Query: 671 KGLDPARVSVPVIGGHAGKTIIPLISQCTPKVDFPQDQLSTLTGRIQEAGTEVVKAKAGA 850
           KGLDPARV+VPVIGGHAGKTI+PL+SQ TPKVD PQD L+ + GRIQEAGTEV+KAKAGA
Sbjct: 160 KGLDPARVNVPVIGGHAGKTIVPLMSQRTPKVDLPQDPLTAVAGRIQEAGTEVLKAKAGA 219

Query: 851 GSAT 862
           GSAT
Sbjct: 220 GSAT 223



 Score = 67.4 bits (163), Expect(2) = e-100
 Identities = 31/46 (67%), Positives = 34/46 (73%)
 Frame = +3

Query: 867  PWHMPEPGLSSPSWMR*TGRKVLSSVPLSSPRKRTVRISPRRCCWG 1004
            PWH  E GLSSP WM+  GRK LS+VPL SPRK+TV ISP   CWG
Sbjct: 226  PWHTLELGLSSPLWMQRMGRKELSNVPLLSPRKQTVPISPHHYCWG 271


>ref|XP_852803.1| PREDICTED: similar to Malate dehydrogenase, mitochondrial precursor
            [Canis familiaris].
          Length = 245

 Score =  267 bits (683), Expect = 2e-71
 Identities = 146/221 (66%), Positives = 158/221 (71%), Gaps = 2/221 (0%)
 Frame = +2

Query: 425  PRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNPVNSTIPITAEVFKKHGVYN 604
            PRKPGMTRDDLFNTNA++VAT TAACAQHCP+AMIC+ISNPVNSTIPI  EVFKKHG Y+
Sbjct: 61   PRKPGMTRDDLFNTNASVVATPTAACAQHCPEAMICVISNPVNSTIPIATEVFKKHGAYD 120

Query: 605  PNKIFGVTTLDIVRANAFVAELKGLDPARVSVPVIGGHAGKTIIPLISQCTPKVDFPQDQ 784
            PNKIF VTTLDIVRAN F+AEL G  PA                                
Sbjct: 121  PNKIFRVTTLDIVRANTFIAELNG--PA-------------------------------- 146

Query: 785  LSTLTGRIQEAGTEVVKAKAGAGSATLSMAY--AGARFVFSLVDAMNGKEGVVECSFVKS 958
               +TG IQEA TEV   +  + S      +  AGA+FVFSLVDAMNGKEG VECSFVKS
Sbjct: 147  ---ITGLIQEACTEVASFEGQSWSRLCHPVHGRAGAQFVFSLVDAMNGKEGDVECSFVKS 203

Query: 959  QETDCPYFSTPLLLGKKGIEKNLGIGKISPFEEKMIAEAIP 1081
            QE DC YFSTPLLLG+KGIEKNLGIGKISPFEEKMIAEAIP
Sbjct: 204  QEADCAYFSTPLLLGEKGIEKNLGIGKISPFEEKMIAEAIP 244


>ref|XP_851705.1| PREDICTED: similar to malate dehydrogenase, mitochondrial [Canis
            familiaris].
          Length = 113

 Score =  213 bits (543), Expect = 4e-55
 Identities = 109/113 (96%), Positives = 110/113 (97%)
 Frame = +2

Query: 794  LTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFVFSLVDAMNGKEGVVECSFVKSQETDC 973
            +TGRIQEAGTEVVKAKAGAGSATLSMAYAGARFVFSLVDAMNGKEGVVECSFVKSQE DC
Sbjct: 1    MTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFVFSLVDAMNGKEGVVECSFVKSQEADC 60

Query: 974  PYFSTPLLLGKKGIEKNLGIGKISPFEEKMIAEAIPELKASIKKGEEFVKNMK 1132
             YFSTPLLLGKK IEKNLGIGKISPFEEKMIAEAIPELKASIKKGEEFVKNMK
Sbjct: 61   AYFSTPLLLGKKDIEKNLGIGKISPFEEKMIAEAIPELKASIKKGEEFVKNMK 113


>ref|XP_534085.2| PREDICTED: similar to lactate dehydrogenase C [Canis familiaris].
          Length = 420

 Score = 62.8 bits (151), Expect = 1e-09
 Identities = 70/296 (23%), Positives = 119/296 (40%), Gaps = 22/296 (7%)
 Frame = +2

Query: 194  KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIA--HTPGVAADLSHIETRATVKGYLGP 367
            K+ ++G +G +G   ++ +    L   L L D+A     G   DL H             
Sbjct: 110  KITIVG-TGAVGMACAICILLKDLADELALVDVAVDKLKGETMDLQHGSLFFNTSKITSG 168

Query: 368  EQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNP 547
            +          +V++ AG  ++ G +R  L   N  I+ ++  A  QH PD  + I+SNP
Sbjct: 169  KDY-SVSANSKLVIVTAGARQQEGESRLALVQRNVNIMKSIIPAIVQHSPDCKMLIVSNP 227

Query: 548  VNSTIPITAEVFKKHGVYNPNKIFGV-TTLDIVRANAFVAELKGLDPARVSVPVIGGHAG 724
            V+    +T  V+K  G+    ++FG    LD  R    + E  G+ P      +IG H G
Sbjct: 228  VDI---LTYVVWKLSGL-PATRVFGSGCNLDSARFRYLIGEKLGVHPTSCHGWIIGEH-G 282

Query: 725  KTIIPL----------ISQCTPKV--DFPQDQLSTLTGRIQEAGTEVVKAKAGAGSA--- 859
             + +PL          +    PK+  D  +DQ   +  ++ E+  E++K K     A   
Sbjct: 283  DSSVPLWSGVNVAGVALKTLDPKLGTDADKDQWKNIHKQVVESAYEIIKLKGYTSWAIGL 342

Query: 860  ----TLSMAYAGARFVFSLVDAMNGKEGVVECSFVKSQETDCPYFSTPLLLGKKGI 1015
                 +       R V  +   + G  G+ E  F+          S P +LG+ G+
Sbjct: 343  SVTDLVGSVLKNLRRVHPVSTMVKGLYGIKEEIFL----------SIPCVLGQNGV 388


>ref|XP_848921.1| PREDICTED: similar to L-lactate dehydrogenase B chain (LDH-B) (LDH
           heart subunit) (LDH-H) isoform 2 [Canis familiaris].
          Length = 223

 Score = 55.1 bits (131), Expect = 2e-07
 Identities = 45/188 (23%), Positives = 82/188 (43%), Gaps = 6/188 (3%)
 Frame = +2

Query: 188 NAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTP--GVAADLSH----IETRATV 349
           N K+ V+G  G +G   ++ +    L   L L ++      G   DL H    ++T   V
Sbjct: 20  NNKITVVGV-GQVGMACAISILGKSLADELALVNVLEDKLKGEMMDLQHGSLFLQTPKIV 78

Query: 350 KGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMI 529
                P++         +VV+ AGV ++ G +R +L   N  +   +     ++ PD +I
Sbjct: 79  -----PDKDYSVTANSKIVVVTAGVHQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCII 133

Query: 530 CIISNPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAELKGLDPARVSVPVI 709
            ++SNP++    +T   +K  G+     I     LD  R   F+AE  G+ P+     ++
Sbjct: 134 IVVSNPMDI---LTYVTWKLSGLPKHRVIGSGCNLDSARFRYFMAEKFGIHPSSYHGWIL 190

Query: 710 GGHAGKTI 733
           G H   ++
Sbjct: 191 GEHGDSSV 198


>ref|XP_534868.1| PREDICTED: similar to L-lactate dehydrogenase B chain (LDH-B) (LDH
           heart subunit) (LDH-H) [Canis familiaris].
          Length = 334

 Score = 53.5 bits (127), Expect = 6e-07
 Identities = 43/184 (23%), Positives = 76/184 (41%), Gaps = 2/184 (1%)
 Frame = +2

Query: 188 NAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTP--GVAADLSHIETRATVKGYL 361
           N K+ V+G  G +G   ++ +    L   L L D+      G   DL H          +
Sbjct: 21  NNKITVVGV-GQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIV 79

Query: 362 GPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIIS 541
             +          +VV+ AGV ++ G +R +L   N  +   +     ++ PD +I ++S
Sbjct: 80  ADKDY-SVTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVS 138

Query: 542 NPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAELKGLDPARVSVPVIGGHA 721
           NPV+    +T   +K  G+     I     LD  R    +AE  G+ P+     ++G H 
Sbjct: 139 NPVDI---LTYVTWKLSGLPKHRVIGSGCNLDSARFRYLMAEKLGIHPSSCHGWILGEHG 195

Query: 722 GKTI 733
             ++
Sbjct: 196 DSSV 199


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 71,032,900
Number of extensions: 1985919
Number of successful extensions: 7845
Number of sequences better than 1.0e-05: 17
Number of HSP's gapped: 7815
Number of HSP's successfully gapped: 19
Length of query: 573
Length of database: 18,874,504
Length adjustment: 108
Effective length of query: 465
Effective length of database: 15,274,216
Effective search space: 7102510440
Effective search space used: 7102510440
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002096
         (1720 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_005909.2| malate dehydrogenase, mitochondrial precursor [...   612   e-175
Alignment   gi|NP_059144.1| L-lactate dehydrogenase C chain [Homo sapiens].       58   3e-08
Alignment   gi|NP_002292.1| L-lactate dehydrogenase C chain [Homo sapiens].       58   3e-08
Alignment   gi|NP_149972.1| L-lactate dehydrogenase A-like 6B [Homo sapiens].     54   4e-07
Alignment   gi|NP_001167568.1| L-lactate dehydrogenase B chain [Homo sapien...    54   6e-07
Alignment   gi|NP_002291.1| L-lactate dehydrogenase B chain [Homo sapiens].       54   6e-07

>ref|NP_005909.2| malate dehydrogenase, mitochondrial precursor [Homo sapiens].
          Length = 338

 Score =  612 bits (1578), Expect = e-175
 Identities = 305/323 (94%), Positives = 317/323 (98%)
 Frame = +2

Query: 164  SFSTSAQNNAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRA 343
            SFSTSAQNNAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIET+A
Sbjct: 16   SFSTSAQNNAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETKA 75

Query: 344  TVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDA 523
             VKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCP+A
Sbjct: 76   AVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPEA 135

Query: 524  MICIISNPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAELKGLDPARVSVP 703
            MIC+I+NPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRAN FVAELKGLDPARV+VP
Sbjct: 136  MICVIANPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANTFVAELKGLDPARVNVP 195

Query: 704  VIGGHAGKTIIPLISQCTPKVDFPQDQLSTLTGRIQEAGTEVVKAKAGAGSATLSMAYAG 883
            VIGGHAGKTIIPLISQCTPKVDFPQDQL+ LTGRIQEAGTEVVKAKAGAGSATLSMAYAG
Sbjct: 196  VIGGHAGKTIIPLISQCTPKVDFPQDQLTALTGRIQEAGTEVVKAKAGAGSATLSMAYAG 255

Query: 884  ARFVFSLVDAMNGKEGVVECSFVKSQETDCPYFSTPLLLGKKGIEKNLGIGKISPFEEKM 1063
            ARFVFSLVDAMNGKEGVVECSFVKSQET+C YFSTPLLLGKKGIEKNLGIGK+S FEEKM
Sbjct: 256  ARFVFSLVDAMNGKEGVVECSFVKSQETECTYFSTPLLLGKKGIEKNLGIGKVSSFEEKM 315

Query: 1064 IAEAIPELKASIKKGEEFVKNMK 1132
            I++AIPELKASIKKGE+FVK +K
Sbjct: 316  ISDAIPELKASIKKGEDFVKTLK 338


>ref|NP_059144.1| L-lactate dehydrogenase C chain [Homo sapiens].
          Length = 332

 Score = 57.8 bits (138), Expect = 3e-08
 Identities = 78/330 (23%), Positives = 136/330 (41%), Gaps = 23/330 (6%)
 Frame = +2

Query: 185  NNAKVAVLGASG-GIGQPLSLLLKNSPLVSRLTLYDIA--HTPGVAADLSHIETR-ATVK 352
            +  K+ ++G    G+   +S+LLK+  L   L L D+A     G   DL H     +T K
Sbjct: 19   SQCKITIVGTGAVGMACAISILLKD--LADELALVDVALDKLKGEMMDLQHGSLFFSTSK 76

Query: 353  GYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMIC 532
               G +          +V++ AG  ++ G TR  L   N  I+ ++  A   + PD  I 
Sbjct: 77   ITSGKDYSVSA--NSRIVIVTAGARQQEGETRLALVQRNVAIMKSIIPAIVHYSPDCKIL 134

Query: 533  IISNPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAELKGLDPARVSVPVIG 712
            ++SNPV+    +T  V+K  G+     I     LD  R    + E  G+ P      +IG
Sbjct: 135  VVSNPVDI---LTYIVWKISGLPVTRVIGSGCNLDSARFRYLIGEKLGVHPTSCHGWIIG 191

Query: 713  GHAGKTIIPL----------ISQCTPKV--DFPQDQLSTLTGRIQEAGTEVVKAKA---- 844
             H G + +PL          +    PK+  D  ++    +  ++ ++  E++K K     
Sbjct: 192  EH-GDSSVPLWSGVNVAGVALKTLDPKLGTDSDKEHWKNIHKQVIQSAYEIIKLKGYTSW 250

Query: 845  GAGSATLSMA---YAGARFVFSLVDAMNGKEGVVECSFVKSQETDCPYFSTPLLLGKKGI 1015
              G + + +        R V  +   + G  G+ E  F+          S P +LG+ G+
Sbjct: 251  AIGLSVMDLVGSILKNLRRVHPVSTMVKGLYGIKEELFL----------SIPCVLGRNGV 300

Query: 1016 EKNLGIGKISPFEEKMIAEAIPELKASIKK 1105
               + I   S  EE+ + +   E   +I+K
Sbjct: 301  SDVVKINLNS--EEEALFKKSAETLWNIQK 328


>ref|NP_002292.1| L-lactate dehydrogenase C chain [Homo sapiens].
          Length = 332

 Score = 57.8 bits (138), Expect = 3e-08
 Identities = 78/330 (23%), Positives = 136/330 (41%), Gaps = 23/330 (6%)
 Frame = +2

Query: 185  NNAKVAVLGASG-GIGQPLSLLLKNSPLVSRLTLYDIA--HTPGVAADLSHIETR-ATVK 352
            +  K+ ++G    G+   +S+LLK+  L   L L D+A     G   DL H     +T K
Sbjct: 19   SQCKITIVGTGAVGMACAISILLKD--LADELALVDVALDKLKGEMMDLQHGSLFFSTSK 76

Query: 353  GYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMIC 532
               G +          +V++ AG  ++ G TR  L   N  I+ ++  A   + PD  I 
Sbjct: 77   ITSGKDYSVSA--NSRIVIVTAGARQQEGETRLALVQRNVAIMKSIIPAIVHYSPDCKIL 134

Query: 533  IISNPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAELKGLDPARVSVPVIG 712
            ++SNPV+    +T  V+K  G+     I     LD  R    + E  G+ P      +IG
Sbjct: 135  VVSNPVDI---LTYIVWKISGLPVTRVIGSGCNLDSARFRYLIGEKLGVHPTSCHGWIIG 191

Query: 713  GHAGKTIIPL----------ISQCTPKV--DFPQDQLSTLTGRIQEAGTEVVKAKA---- 844
             H G + +PL          +    PK+  D  ++    +  ++ ++  E++K K     
Sbjct: 192  EH-GDSSVPLWSGVNVAGVALKTLDPKLGTDSDKEHWKNIHKQVIQSAYEIIKLKGYTSW 250

Query: 845  GAGSATLSMA---YAGARFVFSLVDAMNGKEGVVECSFVKSQETDCPYFSTPLLLGKKGI 1015
              G + + +        R V  +   + G  G+ E  F+          S P +LG+ G+
Sbjct: 251  AIGLSVMDLVGSILKNLRRVHPVSTMVKGLYGIKEELFL----------SIPCVLGRNGV 300

Query: 1016 EKNLGIGKISPFEEKMIAEAIPELKASIKK 1105
               + I   S  EE+ + +   E   +I+K
Sbjct: 301  SDVVKINLNS--EEEALFKKSAETLWNIQK 328


>ref|NP_149972.1| L-lactate dehydrogenase A-like 6B [Homo sapiens].
          Length = 381

 Score = 53.9 bits (128), Expect = 4e-07
 Identities = 75/326 (23%), Positives = 138/326 (42%), Gaps = 20/326 (6%)
 Frame = +2

Query: 185  NNAKVAVLGA-SGGIGQPLSLLLKNSPLVSRLTLYDIAHTP--GVAADLSHIETRATVKG 355
            +++KV+++G  S G+   +S+LLK   L   L L D+      G   DL H      +  
Sbjct: 68   HHSKVSIIGTGSVGMACAISILLKG--LSDELALVDLDEDKLKGETMDLQHGSPFTKMPN 125

Query: 356  YLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICI 535
             +  +         ++V+I AG  ++ G TR +L   N  I   + ++  Q+ P   + I
Sbjct: 126  IVCSKDY-FVTANSNLVIITAGARQEKGETRLNLVQRNVAIFKLMISSIVQYSPHCKLII 184

Query: 536  ISNPVNSTIPITAEVFKKHGVYNPNKIFGV-TTLDIVRANAFVAELKGLDPARVSVPVIG 712
            +SNPV+    I   V  K   +  N+I G    LD  R    + +  G+        ++G
Sbjct: 185  VSNPVD----ILTYVAWKLSAFPKNRIIGSGCNLDTARFRFLIGQKLGIHSESCHGWILG 240

Query: 713  GHAGKTIIPLISQC----TPKVDFPQD--------QLSTLTGRIQEAGTEVVKAKAGAGS 856
             H G + +P+ S       P  D   D        Q   +   +     E++K K G  S
Sbjct: 241  EH-GDSSVPVWSGVNIAGVPLKDLNSDIGTDKDPEQWKNVHKEVTATAYEIIKMK-GYTS 298

Query: 857  ATLSMAYAG-ARFVFSLVDAMNGKEGVVECSFVKSQETDCPYFSTPLLLGKKGIEKNLGI 1033
              + ++ A     +   +  ++    +++  +   +E    + S P +LG+ GI   + I
Sbjct: 299  WAIGLSVADLTESILKNLRRIHPVSTIIKGLYGIDEEV---FLSIPCILGENGITNLIKI 355

Query: 1034 GKISPFEE---KMIAEAIPELKASIK 1102
             K++P EE   K  A+ + E++  +K
Sbjct: 356  -KLTPEEEAHLKKSAKTLWEIQNKLK 380


>ref|NP_001167568.1| L-lactate dehydrogenase B chain [Homo sapiens].
          Length = 334

 Score = 53.5 bits (127), Expect = 6e-07
 Identities = 43/184 (23%), Positives = 76/184 (41%), Gaps = 2/184 (1%)
 Frame = +2

Query: 188 NAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTP--GVAADLSHIETRATVKGYL 361
           N K+ V+G  G +G   ++ +    L   L L D+      G   DL H          +
Sbjct: 21  NNKITVVGV-GQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIV 79

Query: 362 GPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIIS 541
             +          +VV+ AGV ++ G +R +L   N  +   +     ++ PD +I ++S
Sbjct: 80  ADKDY-SVTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVS 138

Query: 542 NPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAELKGLDPARVSVPVIGGHA 721
           NPV+    +T   +K  G+     I     LD  R    +AE  G+ P+     ++G H 
Sbjct: 139 NPVDI---LTYVTWKLSGLPKHRVIGSGCNLDSARFRYLMAEKLGIHPSSCHGWILGEHG 195

Query: 722 GKTI 733
             ++
Sbjct: 196 DSSV 199


>ref|NP_002291.1| L-lactate dehydrogenase B chain [Homo sapiens].
          Length = 334

 Score = 53.5 bits (127), Expect = 6e-07
 Identities = 43/184 (23%), Positives = 76/184 (41%), Gaps = 2/184 (1%)
 Frame = +2

Query: 188 NAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTP--GVAADLSHIETRATVKGYL 361
           N K+ V+G  G +G   ++ +    L   L L D+      G   DL H          +
Sbjct: 21  NNKITVVGV-GQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIV 79

Query: 362 GPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIIS 541
             +          +VV+ AGV ++ G +R +L   N  +   +     ++ PD +I ++S
Sbjct: 80  ADKDY-SVTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVS 138

Query: 542 NPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAELKGLDPARVSVPVIGGHA 721
           NPV+    +T   +K  G+     I     LD  R    +AE  G+ P+     ++G H 
Sbjct: 139 NPVDI---LTYVTWKLSGLPKHRVIGSGCNLDSARFRYLMAEKLGIHPSSCHGWILGEHG 195

Query: 722 GKTI 733
             ++
Sbjct: 196 DSSV 199


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 69,608,590
Number of extensions: 1940446
Number of successful extensions: 7390
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 7375
Number of HSP's successfully gapped: 6
Length of query: 573
Length of database: 18,297,164
Length adjustment: 108
Effective length of query: 465
Effective length of database: 14,737,052
Effective search space: 6852729180
Effective search space used: 6852729180
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002096
         (1720 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_032643.2| malate dehydrogenase, mitochondrial precursor [...   619   e-177
Alignment   gi|NP_038608.1| L-lactate dehydrogenase C chain [Mus musculus].       57   6e-08
Alignment   gi|NP_032518.1| L-lactate dehydrogenase B chain [Mus musculus].       53   6e-07
Alignment   gi|XP_904967.1| PREDICTED: l-lactate dehydrogenase B chain-like...    50   4e-06

>ref|NP_032643.2| malate dehydrogenase, mitochondrial precursor [Mus musculus].
          Length = 338

 Score =  619 bits (1597), Expect = e-177
 Identities = 309/323 (95%), Positives = 320/323 (99%)
 Frame = +2

Query: 164  SFSTSAQNNAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRA 343
            SFSTSAQNNAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRA
Sbjct: 16   SFSTSAQNNAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRA 75

Query: 344  TVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDA 523
             VKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCP+A
Sbjct: 76   NVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPEA 135

Query: 524  MICIISNPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAELKGLDPARVSVP 703
            M+CII+NPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRAN FVAELKGLDPARV+VP
Sbjct: 136  MVCIIANPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANTFVAELKGLDPARVNVP 195

Query: 704  VIGGHAGKTIIPLISQCTPKVDFPQDQLSTLTGRIQEAGTEVVKAKAGAGSATLSMAYAG 883
            VIGGHAGKTIIPLISQCTPKVDFPQDQL+TLTGRIQEAGTEVVKAKAGAGSATLSMAYAG
Sbjct: 196  VIGGHAGKTIIPLISQCTPKVDFPQDQLATLTGRIQEAGTEVVKAKAGAGSATLSMAYAG 255

Query: 884  ARFVFSLVDAMNGKEGVVECSFVKSQETDCPYFSTPLLLGKKGIEKNLGIGKISPFEEKM 1063
            ARFVFSLVDAMNGKEGVVECSFV+S+ET+C YFSTPLLLGKKG+EKNLGIGKI+PFEEKM
Sbjct: 256  ARFVFSLVDAMNGKEGVVECSFVQSKETECTYFSTPLLLGKKGLEKNLGIGKITPFEEKM 315

Query: 1064 IAEAIPELKASIKKGEEFVKNMK 1132
            IAEAIPELKASIKKGE+FVKNMK
Sbjct: 316  IAEAIPELKASIKKGEDFVKNMK 338


>ref|NP_038608.1| L-lactate dehydrogenase C chain [Mus musculus].
          Length = 332

 Score = 56.6 bits (135), Expect = 6e-08
 Identities = 73/298 (24%), Positives = 117/298 (39%), Gaps = 21/298 (7%)
 Frame = +2

Query: 185  NNAKVAVLGASG-GIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIET-RATVKGY 358
            +  K+ V+G    G+   +S+LLK       L   D     G A DL H     +T K  
Sbjct: 19   SRCKITVVGVGNVGMACAISILLKGLADELALVDADTNKLRGEALDLLHGSLFLSTPKIV 78

Query: 359  LGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICII 538
             G +   +      +V+I AG     G TR DL   N  I+  +     Q+ PD  I I+
Sbjct: 79   FGKDY--NVSANSKLVIITAGARMVSGETRLDLLQRNVAIMKAIVPGIVQNSPDCKIIIV 136

Query: 539  SNPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAELKGLDPARVSVPVIGGH 718
            +NPV+    +T  V+K  G      I     LD  R    + E  G++P      V+G H
Sbjct: 137  TNPVDI---LTYVVWKISGFPVGRVIGSGCNLDSARFRYLIGEKLGVNPTSCHGWVLGEH 193

Query: 719  AGKTIIPL----------ISQCTPKV--DFPQDQLSTLTGRIQEAGTEVVKAKA----GA 850
             G + +P+          +    P +  D  ++    +  ++ E G EV+  K       
Sbjct: 194  -GDSSVPIWSGVNVAGVTLKSLNPAIGTDSDKEHWKNVHKQVVEGGYEVLNMKGYTSWAI 252

Query: 851  GSATLSMAYA---GARFVFSLVDAMNGKEGVVECSFVKSQETDCPYFSTPLLLGKKGI 1015
            G +   +A +     + V  +   + G  G+ E  F+          S P +LG+ GI
Sbjct: 253  GLSVTDLARSILKNLKRVHPVTTLVKGFHGIKEEVFL----------SIPCVLGQSGI 300


>ref|NP_032518.1| L-lactate dehydrogenase B chain [Mus musculus].
          Length = 334

 Score = 53.1 bits (126), Expect = 6e-07
 Identities = 44/188 (23%), Positives = 77/188 (40%), Gaps = 2/188 (1%)
 Frame = +2

Query: 176 SAQNNAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTP--GVAADLSHIETRATV 349
           +A  N K+ V+G  G +G   ++ +    L   L L D+      G   DL H       
Sbjct: 17  AAVPNNKITVVGV-GQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQT 75

Query: 350 KGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMI 529
              +  +          +VV+ AGV ++ G +R +L   N  +   +     ++ PD  I
Sbjct: 76  PKIVADKDY-SVTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCTI 134

Query: 530 CIISNPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAELKGLDPARVSVPVI 709
            ++SNPV+    +T   +K  G+     I     LD  R    +AE  G+ P+     ++
Sbjct: 135 IVVSNPVDI---LTYVTWKLSGLPKHRVIGSGCNLDSARFRYLMAEKLGIHPSSCHGWIL 191

Query: 710 GGHAGKTI 733
           G H   ++
Sbjct: 192 GEHGDSSV 199


>ref|XP_904967.1| PREDICTED: l-lactate dehydrogenase B chain-like isoform 7 [Mus
           musculus].
          Length = 334

 Score = 50.4 bits (119), Expect = 4e-06
 Identities = 43/188 (22%), Positives = 76/188 (40%), Gaps = 2/188 (1%)
 Frame = +2

Query: 176 SAQNNAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTP--GVAADLSHIETRATV 349
           +A  N K+ V+G  G +G   ++ +    L   L L D+          DL H       
Sbjct: 17  AAVPNNKITVVGV-GQVGMACAISILGKSLADELALVDVLEDKLKEEMMDLQHGSLFLQT 75

Query: 350 KGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMI 529
              +  +          +VV+ AGV ++ G +R +L   N  +   +     ++ PD  I
Sbjct: 76  PKIVADKDY-SVTANSKIVVVSAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCTI 134

Query: 530 CIISNPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAELKGLDPARVSVPVI 709
            ++SNPV+    +T   +K  G+     I     LD  R    +AE  G+ P+     ++
Sbjct: 135 IVVSNPVDI---LTYVTWKLRGLPKHRVIGSGCNLDSARFRYLMAEKLGIHPSSCHGWIL 191

Query: 710 GGHAGKTI 733
           G H   ++
Sbjct: 192 GEHGDSSV 199


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 58,811,226
Number of extensions: 1614701
Number of successful extensions: 6010
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 5997
Number of HSP's successfully gapped: 4
Length of query: 573
Length of database: 15,617,559
Length adjustment: 107
Effective length of query: 466
Effective length of database: 12,403,707
Effective search space: 5780127462
Effective search space used: 5780127462
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002096
         (1720 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_003354540.1| PREDICTED: malate dehydrogenase, mitochondri...   639   0.0  
Alignment   gi|XP_003361319.1| PREDICTED: malate dehydrogenase, mitochondri...   587   e-168
Alignment   gi|NP_001182704.1| L-lactate dehydrogenase C chain [Sus scrofa].      59   1e-08
Alignment   gi|XP_003353222.1| PREDICTED: l-lactate dehydrogenase A-like 6B...    55   2e-07
Alignment   gi|XP_001926443.2| PREDICTED: l-lactate dehydrogenase A-like 6B...    55   2e-07
Alignment   gi|NP_001106758.1| L-lactate dehydrogenase B chain [Sus scrofa].      53   5e-07
Alignment   gi|XP_003355600.1| PREDICTED: l-lactate dehydrogenase B chain-l...    53   5e-07
Alignment   gi|XP_003361852.1| PREDICTED: l-lactate dehydrogenase A-like 6B...    50   3e-06

>ref|XP_003354540.1| PREDICTED: malate dehydrogenase, mitochondrial [Sus scrofa].
          Length = 338

 Score =  639 bits (1648), Expect = 0.0
 Identities = 323/323 (100%), Positives = 323/323 (100%)
 Frame = +2

Query: 164  SFSTSAQNNAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRA 343
            SFSTSAQNNAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRA
Sbjct: 16   SFSTSAQNNAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRA 75

Query: 344  TVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDA 523
            TVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDA
Sbjct: 76   TVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDA 135

Query: 524  MICIISNPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAELKGLDPARVSVP 703
            MICIISNPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAELKGLDPARVSVP
Sbjct: 136  MICIISNPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAELKGLDPARVSVP 195

Query: 704  VIGGHAGKTIIPLISQCTPKVDFPQDQLSTLTGRIQEAGTEVVKAKAGAGSATLSMAYAG 883
            VIGGHAGKTIIPLISQCTPKVDFPQDQLSTLTGRIQEAGTEVVKAKAGAGSATLSMAYAG
Sbjct: 196  VIGGHAGKTIIPLISQCTPKVDFPQDQLSTLTGRIQEAGTEVVKAKAGAGSATLSMAYAG 255

Query: 884  ARFVFSLVDAMNGKEGVVECSFVKSQETDCPYFSTPLLLGKKGIEKNLGIGKISPFEEKM 1063
            ARFVFSLVDAMNGKEGVVECSFVKSQETDCPYFSTPLLLGKKGIEKNLGIGKISPFEEKM
Sbjct: 256  ARFVFSLVDAMNGKEGVVECSFVKSQETDCPYFSTPLLLGKKGIEKNLGIGKISPFEEKM 315

Query: 1064 IAEAIPELKASIKKGEEFVKNMK 1132
            IAEAIPELKASIKKGEEFVKNMK
Sbjct: 316  IAEAIPELKASIKKGEEFVKNMK 338


>ref|XP_003361319.1| PREDICTED: malate dehydrogenase, mitochondrial-like [Sus scrofa].
          Length = 418

 Score =  587 bits (1513), Expect = e-168
 Identities = 305/335 (91%), Positives = 306/335 (91%), Gaps = 12/335 (3%)
 Frame = +2

Query: 164  SFSTSAQNNAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRA 343
            +FSTSAQNNAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRA
Sbjct: 84   AFSTSAQNNAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRA 143

Query: 344  TVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDA 523
            TVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDA
Sbjct: 144  TVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDA 203

Query: 524  MICIISNPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAELKGLDPARVSVP 703
            MICIISNPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAELKGLDPARVSVP
Sbjct: 204  MICIISNPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAELKGLDPARVSVP 263

Query: 704  VIG-------GHAGKTIIPLIS-----QCTPKVDFPQDQLSTLTGRIQEAGTEVVKAKAG 847
            VIG       GH G    P         CTPKVDFPQDQLSTLTGRIQEAGTEVVKAKAG
Sbjct: 264  VIGVVKGPLDGHVGLWSGPAFQGSTPMGCTPKVDFPQDQLSTLTGRIQEAGTEVVKAKAG 323

Query: 848  AGSATLSMAYAGARFVFSLVDAMNGKEGVVECSFVKSQETDCPYFSTPLLLGKKGIEKNL 1027
            AGSATLSMAYAGARFVFSLVDAMNGKEGVVEC        DCPYFSTPLLLGKKGIEKNL
Sbjct: 324  AGSATLSMAYAGARFVFSLVDAMNGKEGVVECXXXXXXXXDCPYFSTPLLLGKKGIEKNL 383

Query: 1028 GIGKISPFEEKMIAEAIPELKASIKKGEEFVKNMK 1132
            GIGKISPFEEKMIAEAIPELKASIKKGEEFVKNMK
Sbjct: 384  GIGKISPFEEKMIAEAIPELKASIKKGEEFVKNMK 418


>ref|NP_001182704.1| L-lactate dehydrogenase C chain [Sus scrofa].
          Length = 332

 Score = 58.5 bits (140), Expect = 1e-08
 Identities = 68/302 (22%), Positives = 118/302 (39%), Gaps = 25/302 (8%)
 Frame = +2

Query: 185  NNAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIA--HTPGVAADLSH----IETRAT 346
            + +K+ ++G +G +G   ++ +    L   L L D+A     G   DL H      T   
Sbjct: 19   SQSKITIVG-TGAVGMACAICILLKDLADELALVDVAVDKLKGETMDLQHGSLFFNTSKI 77

Query: 347  VKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAM 526
            V G     +         +V++ AG  ++ G +R  L   N  I+ ++     QH PD  
Sbjct: 78   VSG-----KDYSVSANSKIVIVTAGARQQEGESRLALVQRNVNIMKSIIPTIVQHSPDCK 132

Query: 527  ICIISNPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAELKGLDPARVSVPV 706
            + I+SNPV+    +T   +K  G+     I     LD  R    + +  G+ P      +
Sbjct: 133  MLIVSNPVDI---LTYVAWKLSGLPATRVIGSGCNLDSARFRYLIGKKLGVHPTSCHGWI 189

Query: 707  IGGHAGKTIIPL----------ISQCTPKV--DFPQDQLSTLTGRIQEAGTEVVKAKAGA 850
            IG H G + +PL          +    PK+  D  +DQ   +  ++  +  E++K K   
Sbjct: 190  IGEH-GDSSVPLWSGVNVAGVALKTLDPKLGTDSDKDQWKNIHKQVIGSAYEIIKLKGYT 248

Query: 851  GSA-------TLSMAYAGARFVFSLVDAMNGKEGVVECSFVKSQETDCPYFSTPLLLGKK 1009
              A        +       R V  +   + G  G+ E  F+          S P +LG+ 
Sbjct: 249  SWAIGLSVTDLVGSILKNLRRVHPVSTMVKGLYGIKEEIFL----------SIPCVLGRN 298

Query: 1010 GI 1015
            G+
Sbjct: 299  GV 300


>ref|XP_003353222.1| PREDICTED: l-lactate dehydrogenase A-like 6B-like [Sus scrofa].
          Length = 381

 Score = 54.7 bits (130), Expect = 2e-07
 Identities = 78/343 (22%), Positives = 141/343 (41%), Gaps = 32/343 (9%)
 Frame = +2

Query: 170  STSAQNNAKVAVLGA-SGGIGQPLSLLLKNSPLVSRLTLYDI--AHTPGVAADLSH---- 328
            S    ++ K++++G  S G+   +S+LLK   L   L L D+  +   G   DL H    
Sbjct: 63   SEEVVHSNKISIVGTGSVGMACAISILLKG--LTDELALVDVDESRLKGETMDLQHGSPF 120

Query: 329  --IETRATVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAAC 502
              +    + K YL            ++V+I AG  ++ G TR +L   N TI   + ++ 
Sbjct: 121  VKMPNIVSSKDYL-------ITANSNLVIITAGARQEKGETRLNLVQRNVTIFKLMISSI 173

Query: 503  AQHCPDAMICIISNPVNSTIPITAEVFKKHGVYNPNKIFGV-TTLDIVRANAFVAELKGL 679
             Q+ P   + ++SNPV+    I   V  K   +  N+I G    LD  R    + +  G+
Sbjct: 174  VQYSPRCKLIVVSNPVD----ILTYVAWKLSEFPQNRIIGSGCNLDTARFRFLIGQRLGI 229

Query: 680  DPARVSVPVIGGHAGKTI----------IPLIS-QCTPKVDFPQDQLSTLTGRIQEAGTE 826
                    ++G H   ++          +PL +       D   +Q   +   +  +  E
Sbjct: 230  HSESCHGWILGEHGDSSVPVWSGVNIAGVPLKNLNLDIGTDKDPEQWKNVHKDVVASAYE 289

Query: 827  VVKAKAGAGSATLSMAYA--------GARFVFSLVDAMNGKEGVVECSFVKSQETDCPYF 982
            ++K K G  S  + ++ A          R V  +   + G  G+ E  F+          
Sbjct: 290  IIKMK-GYTSWAIGLSVADLTESILKNLRRVHPVSTRIKGLYGINEEVFL---------- 338

Query: 983  STPLLLGKKGIEKNLGIGKISPFEEKMI---AEAIPELKASIK 1102
            S P +LG+ GI   + + K++P EE  +   A+ + E++  +K
Sbjct: 339  SVPCILGESGITDLIKV-KLTPEEEAYLQKSAKTLWEIQKELK 380


>ref|XP_001926443.2| PREDICTED: l-lactate dehydrogenase A-like 6B-like [Sus scrofa].
          Length = 381

 Score = 54.7 bits (130), Expect = 2e-07
 Identities = 78/343 (22%), Positives = 141/343 (41%), Gaps = 32/343 (9%)
 Frame = +2

Query: 170  STSAQNNAKVAVLGA-SGGIGQPLSLLLKNSPLVSRLTLYDI--AHTPGVAADLSH---- 328
            S    ++ K++++G  S G+   +S+LLK   L   L L D+  +   G   DL H    
Sbjct: 63   SEEVVHSNKISIVGTGSVGMACAISILLKG--LTDELALVDVDESRLKGETMDLQHGSPF 120

Query: 329  --IETRATVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAAC 502
              +    + K YL            ++V+I AG  ++ G TR +L   N TI   + ++ 
Sbjct: 121  VKMPNIVSSKDYL-------ITANSNLVIITAGARQEKGETRLNLVQRNVTIFKLMISSI 173

Query: 503  AQHCPDAMICIISNPVNSTIPITAEVFKKHGVYNPNKIFGV-TTLDIVRANAFVAELKGL 679
             Q+ P   + ++SNPV+    I   V  K   +  N+I G    LD  R    + +  G+
Sbjct: 174  VQYSPRCKLIVVSNPVD----ILTYVAWKLSEFPQNRIIGSGCNLDTARFRFLIGQRLGI 229

Query: 680  DPARVSVPVIGGHAGKTI----------IPLIS-QCTPKVDFPQDQLSTLTGRIQEAGTE 826
                    ++G H   ++          +PL +       D   +Q   +   +  +  E
Sbjct: 230  HSESCHGWILGEHGDSSVPVWSGVNIAGVPLKNLNLDIGTDKDPEQWKNVHKDVVASAYE 289

Query: 827  VVKAKAGAGSATLSMAYA--------GARFVFSLVDAMNGKEGVVECSFVKSQETDCPYF 982
            ++K K G  S  + ++ A          R V  +   + G  G+ E  F+          
Sbjct: 290  IIKMK-GYTSWAIGLSVADLTESILKNLRRVHPVSTRIKGLYGINEEVFL---------- 338

Query: 983  STPLLLGKKGIEKNLGIGKISPFEEKMI---AEAIPELKASIK 1102
            S P +LG+ GI   + + K++P EE  +   A+ + E++  +K
Sbjct: 339  SVPCILGESGITDLIKV-KLTPEEEAYLQKSAKTLWEIQKELK 380


>ref|NP_001106758.1| L-lactate dehydrogenase B chain [Sus scrofa].
          Length = 334

 Score = 53.1 bits (126), Expect = 5e-07
 Identities = 43/184 (23%), Positives = 76/184 (41%), Gaps = 2/184 (1%)
 Frame = +2

Query: 188 NAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTP--GVAADLSHIETRATVKGYL 361
           N K+ V+G  G +G   ++ +    L   L L D+      G   DL H          +
Sbjct: 21  NNKITVVGV-GQVGMACAISILGKSLTDELALVDVLEDKLKGEMMDLQHGSLFLQTPKIV 79

Query: 362 GPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIIS 541
             +          +VV+ AGV ++ G +R +L   N  +   +     ++ PD +I ++S
Sbjct: 80  ADKDY-SVTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVS 138

Query: 542 NPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAELKGLDPARVSVPVIGGHA 721
           NPV+    +T   +K  G+     I     LD  R    +AE  G+ P+     ++G H 
Sbjct: 139 NPVDI---LTYVTWKLSGLPKHRVIGSGCNLDSARFRYLMAEKLGVHPSSCHGWILGEHG 195

Query: 722 GKTI 733
             ++
Sbjct: 196 DSSV 199


>ref|XP_003355600.1| PREDICTED: l-lactate dehydrogenase B chain-like [Sus scrofa].
          Length = 428

 Score = 53.1 bits (126), Expect = 5e-07
 Identities = 43/184 (23%), Positives = 76/184 (41%), Gaps = 2/184 (1%)
 Frame = +2

Query: 188 NAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTP--GVAADLSHIETRATVKGYL 361
           N K+ V+G  G +G   ++ +    L   L L D+      G   DL H          +
Sbjct: 114 NNKITVVGV-GQVGMACAISILGKSLTDELALVDVLEDKLKGEMMDLQHGSLFLQTPKIV 172

Query: 362 GPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIIS 541
             +          +VV+ AGV ++ G +R +L   N  +   +     ++ PD +I ++S
Sbjct: 173 ADKDY-SVTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVS 231

Query: 542 NPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAELKGLDPARVSVPVIGGHA 721
           NPV+    +T   +K  G+     I     LD  R    +AE  G+ P+     ++G H 
Sbjct: 232 NPVDI---LTYVTWKLSGLPKHRVIGSGCNLDSARFRYLMAEKLGVHPSSCHGWILGEHG 288

Query: 722 GKTI 733
             ++
Sbjct: 289 DSSV 292


>ref|XP_003361852.1| PREDICTED: l-lactate dehydrogenase A-like 6B-like, partial [Sus
            scrofa].
          Length = 328

 Score = 50.4 bits (119), Expect = 3e-06
 Identities = 75/337 (22%), Positives = 135/337 (40%), Gaps = 31/337 (9%)
 Frame = +2

Query: 170  STSAQNNAKVAVLGA-SGGIGQPLSLLLKNSPLVSRLTLYDIAHT----PGVAADLSH-- 328
            S    ++ K++++G  S G+   +S+LLK   L   L L D+  +         DL H  
Sbjct: 14   SEEVVHSNKISIVGTGSVGMACAISILLKG--LTDELALVDVDESRLKGETXTMDLQHGS 71

Query: 329  ----IETRATVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTA 496
                +    + K YL            ++V+I AG  ++ G TR +L   N TI   + +
Sbjct: 72   PFVKMPNIVSSKDYL-------ITANSNLVIITAGARQEKGETRLNLVQRNVTIFKLMIS 124

Query: 497  ACAQHCPDAMICIISNPVNSTIPITAEVFKKHGVYNPNKIFGV-TTLDIVRANAFVAELK 673
            +  Q+ P   + ++SNPV+    I   V  K   +  N+I G    LD  R    + +  
Sbjct: 125  SIVQYSPRCKLIVVSNPVD----ILTYVAWKLSEFPQNRIIGSGCNLDTARFRFLIGQRL 180

Query: 674  GLDPARVSVPVIGGHAGKTI----------IPLIS-QCTPKVDFPQDQLSTLTGRIQEAG 820
            G+        ++G H   ++          +PL +       D   +Q   +   +  + 
Sbjct: 181  GIHSESCHGWILGEHGDSSVPVWSGVNIAGVPLKNLNLDIGTDKDPEQWKNVHKDVVASA 240

Query: 821  TEVVKAKAGAGSATLSMAYA--------GARFVFSLVDAMNGKEGVVECSFVKSQETDCP 976
             E++K K G  S  + ++ A          R V  +   + G  G+ E  F+        
Sbjct: 241  YEIIKMK-GYTSWAIGLSVADLTESILKNLRRVHPVSTRIKGLYGINEEVFL-------- 291

Query: 977  YFSTPLLLGKKGIEKNLGIGKISPFEEKMIAEAIPEL 1087
              S P +LG+ GI   + + K++P EE  + ++   L
Sbjct: 292  --SVPCILGESGITDLIKV-KLTPEEEAYLQKSAKTL 325


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 43,852,690
Number of extensions: 1237342
Number of successful extensions: 4980
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 4974
Number of HSP's successfully gapped: 8
Length of query: 573
Length of database: 11,343,932
Length adjustment: 104
Effective length of query: 469
Effective length of database: 8,754,644
Effective search space: 4105928036
Effective search space used: 4105928036
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002096
         (1720 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GL894019.2| Sus scrofa unplaced genomic scaffold ChrUScaf1904     1191   0.0  
Sscrofa_Chr03                                                        1191   0.0  
Sscrofa_Chr09                                                         167   3e-38
Sscrofa_Chr05                                                          90   5e-15

>gb|GL894019.2| Sus scrofa unplaced genomic scaffold ChrUScaf1904
          Length = 181737

 Score = 1191 bits (601), Expect = 0.0
 Identities = 695/721 (96%), Gaps = 4/721 (0%)
 Strand = Plus / Plus

                                                                          
Query: 1003   gaaaaagggcatcgagaagaatctaggcatcggcaaaatctccccttttgaagagaagat 1062
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137054 gaaaaagggcatcgagaagaatctaggcatcggcaaaatctccccttttgaagagaagat 137113

                                                                          
Query: 1063   gatcgccgaggccattcctgagctgaaagcctccatcaagaaaggagaggagtttgtcaa 1122
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137114 gatcgccgaggccattcctgagctgaaagcctccatcaagaaaggagaggagtttgtcaa 137173

                                                                          
Query: 1123   gaacatgaaatgagcaggcggttggcgagcagtccgcttccttaacttattcgggcatca 1182
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137174 gaacatgaaatgagcaggcggttggcgagcagtccgcttccttaacttattcgggcatca 137233

                                                                          
Query: 1183   tgtcactgtaaagccatttcagacccctctgtctcctccctttgctttggtgatgagtgt 1242
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137234 tgtcactgtaaagccatttcagacccctctgtctcctccctttgctttggtgatgagtgt 137293

                                                                          
Query: 1243   cctgttcacaaagcaccccttccaaatctcggggcgtctctcggtgcatccgtaaagcag 1302
              |||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 137294 cctgtttacaaagcaccccttccaaatctcggggcatctctcggtgcatccgtaaagcag 137353

                                                                          
Query: 1303   gctctggtcttgtttttgagagtctcctccggttgaatactcggctttcttccccaacag 1362
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137354 gctctggtcttgtttttgagagtctcctccggttgaatactcggctttcttccccaacag 137413

                                                                          
Query: 1363   agctgactgcagagtgtccatcgtgaatcggaactagatgtgttttcaaaatagacggaa 1422
              |||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct: 137414 agctgactgcagagtgtccatcgtgattcggaactagatgtgtttccaaaatagacggaa 137473

                                                                          
Query: 1423   gcatgatggtctgtcagtagcttcagatctcacatctttatcagtaactgcttctcccac 1482
              |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 137474 gcatgatggtctgtcagtagcttcagatctcacacctttatcagtaactgcttctcccac 137533

                                                                          
Query: 1483   cctgccctctgctccgtcaagtccctcgggtgtgtgggctgaaagaagggctggctgcat 1542
              |||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct: 137534 cctgccctctgctccgtcgagtccctcgggtgtgtgggctgaaggaagggctggctgcat 137593

                                                                          
Query: 1543   ccaaaaggttggcagcccggtggccaacgccaggctgccgtcttatggtcccaagc-tgt 1601
              || | ||| ||||||||||||||||||||||||||||||||||||| || |||||| |||
Sbjct: 137594 ccgagagggtggcagcccggtggccaacgccaggctgccgtcttat-gttccaagcttgt 137652

                                                                          
Query: 1602   ttc-gtgggtgttttcgggcc-aacaaacagcacctttgcctggatttcgttgtctaatt 1659
              ||| ||| |||||||| |||| ||||||||||||| ||| ||||||||||||||||||||
Sbjct: 137653 ttctgtgtgtgttttctggccaaacaaacagcaccattggctggatttcgttgtctaatt 137712

                                                                          
Query: 1660   ctgatcaagccctgaaattcattggcagtgaacatccacagcccaaaatgggaagaaagc 1719
              ||||||||||||||||||||| |||||||||  ||||||||||  || ||||| ||||||
Sbjct: 137713 ctgatcaagccctgaaattcagtggcagtgacaatccacagccagaagtgggaggaaagc 137772

               
Query: 1720   t 1720
              |
Sbjct: 137773 t 137773



 Score =  341 bits (172), Expect = 8e-91
 Identities = 172/172 (100%)
 Strand = Plus / Plus

                                                                          
Query: 183    agaacaatgccaaggtagccgtgctgggggcttccggaggaatcgggcagcccctttcgc 242
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128492 agaacaatgccaaggtagccgtgctgggggcttccggaggaatcgggcagcccctttcgc 128551

                                                                          
Query: 243    ttctcctgaaaaacagccccttggtgagccgcctgaccctctacgatatcgcgcacacac 302
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128552 ttctcctgaaaaacagccccttggtgagccgcctgaccctctacgatatcgcgcacacac 128611

                                                                  
Query: 303    ccggagtggccgcggatctgagccacatcgagaccagagcgactgtgaaagg 354
              ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128612 ccggagtggccgcggatctgagccacatcgagaccagagcgactgtgaaagg 128663



 Score =  254 bits (128), Expect = 1e-64
 Identities = 128/128 (100%)
 Strand = Plus / Plus

                                                                          
Query: 547    ggttaactccaccatcccaatcacggcggaggtcttcaagaaacacggcgtgtacaaccc 606
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131738 ggttaactccaccatcccaatcacggcggaggtcttcaagaaacacggcgtgtacaaccc 131797

                                                                          
Query: 607    caataaaatcttcggggtgacgaccctggacattgtccgagccaacgcttttgttgcaga 666
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131798 caataaaatcttcggggtgacgaccctggacattgtccgagccaacgcttttgttgcaga 131857

                      
Query: 667    gctgaagg 674
              ||||||||
Sbjct: 131858 gctgaagg 131865



 Score =  228 bits (115), Expect = 8e-57
 Identities = 115/115 (100%)
 Strand = Plus / Plus

                                                                          
Query: 435    caggcatgacacgggatgacctgttcaacaccaacgccaccatcgtggccaccctgacgg 494
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130471 caggcatgacacgggatgacctgttcaacaccaacgccaccatcgtggccaccctgacgg 130530

                                                                     
Query: 495    ctgcctgcgcccagcactgccccgacgccatgatctgcatcatttccaacccggt 549
              |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130531 ctgcctgcgcccagcactgccccgacgccatgatctgcatcatttccaacccggt 130585



 Score =  206 bits (104), Expect = 3e-50
 Identities = 104/104 (100%)
 Strand = Plus / Plus

                                                                          
Query: 749    cagtgcaccccgaaggtggactttccgcaggaccagctctccaccctcaccgggcgcatc 808
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135404 cagtgcaccccgaaggtggactttccgcaggaccagctctccaccctcaccgggcgcatc 135463

                                                          
Query: 809    caggaggccggcaccgaggtggtcaaggctaaggccggagcagg 852
              ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135464 caggaggccggcaccgaggtggtcaaggctaaggccggagcagg 135507



 Score =  172 bits (87), Expect = 4e-40
 Identities = 87/87 (100%)
 Strand = Plus / Plus

                                                                          
Query: 352    aggctacctcggacctgagcagctgccagactgcctgaagggctgcgatgtggtggttat 411
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129931 aggctacctcggacctgagcagctgccagactgcctgaagggctgcgatgtggtggttat 129990

                                         
Query: 412    tccagccggagtcccaagaaagccagg 438
              |||||||||||||||||||||||||||
Sbjct: 129991 tccagccggagtcccaagaaagccagg 130017



 Score =  172 bits (87), Expect = 4e-40
 Identities = 93/95 (97%)
 Strand = Plus / Plus

                                                                          
Query: 850    aggctctgccaccctgtccatggcatatgccggagcccggtttgtcttctccctcgtgga 909
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135819 aggctctgccaccctgtccatggcatatgccggagcccggtttgtcttctccctcgtgga 135878

                                                 
Query: 910    tgcgatgaacgggaaggaaggtgttgtcgagtgtt 944
              ||| ||||||||||||||||| |||||||||||||
Sbjct: 135879 tgcaatgaacgggaaggaaggcgttgtcgagtgtt 135913



 Score = 93.7 bits (47), Expect = 3e-16
 Identities = 47/47 (100%)
 Strand = Plus / Plus

                                                             
Query: 672    agggtttggacccggctcgagtcagcgttcccgtcattggcggccac 718
              |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134229 agggtttggacccggctcgagtcagcgttcccgtcattggcggccac 134275



 Score = 65.9 bits (33), Expect = 7e-08
 Identities = 36/37 (97%)
 Strand = Plus / Plus

                                                   
Query: 967    ggactgtccgtatttctccacgccgttgctgctgggg 1003
              |||||||||||||||||||||||| ||||||||||||
Sbjct: 136014 ggactgtccgtatttctccacgccattgctgctgggg 136050


>Sscrofa_Chr03 
||          Length = 144787322

 Score = 1191 bits (601), Expect = 0.0
 Identities = 695/721 (96%), Gaps = 4/721 (0%)
 Strand = Plus / Minus

                                                                           
Query: 1003    gaaaaagggcatcgagaagaatctaggcatcggcaaaatctccccttttgaagagaagat 1062
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9954418 gaaaaagggcatcgagaagaatctaggcatcggcaaaatctccccttttgaagagaagat 9954359

                                                                           
Query: 1063    gatcgccgaggccattcctgagctgaaagcctccatcaagaaaggagaggagtttgtcaa 1122
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9954358 gatcgccgaggccattcctgagctgaaagcctccatcaagaaaggagaggagtttgtcaa 9954299

                                                                           
Query: 1123    gaacatgaaatgagcaggcggttggcgagcagtccgcttccttaacttattcgggcatca 1182
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9954298 gaacatgaaatgagcaggcggttggcgagcagtccgcttccttaacttattcgggcatca 9954239

                                                                           
Query: 1183    tgtcactgtaaagccatttcagacccctctgtctcctccctttgctttggtgatgagtgt 1242
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9954238 tgtcactgtaaagccatttcagacccctctgtctcctccctttgctttggtgatgagtgt 9954179

                                                                           
Query: 1243    cctgttcacaaagcaccccttccaaatctcggggcgtctctcggtgcatccgtaaagcag 1302
               |||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 9954178 cctgtttacaaagcaccccttccaaatctcggggcatctctcggtgcatccgtaaagcag 9954119

                                                                           
Query: 1303    gctctggtcttgtttttgagagtctcctccggttgaatactcggctttcttccccaacag 1362
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9954118 gctctggtcttgtttttgagagtctcctccggttgaatactcggctttcttccccaacag 9954059

                                                                           
Query: 1363    agctgactgcagagtgtccatcgtgaatcggaactagatgtgttttcaaaatagacggaa 1422
               |||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct: 9954058 agctgactgcagagtgtccatcgtgattcggaactagatgtgtttccaaaatagacggaa 9953999

                                                                           
Query: 1423    gcatgatggtctgtcagtagcttcagatctcacatctttatcagtaactgcttctcccac 1482
               |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 9953998 gcatgatggtctgtcagtagcttcagatctcacacctttatcagtaactgcttctcccac 9953939

                                                                           
Query: 1483    cctgccctctgctccgtcaagtccctcgggtgtgtgggctgaaagaagggctggctgcat 1542
               |||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct: 9953938 cctgccctctgctccgtcgagtccctcgggtgtgtgggctgaaggaagggctggctgcat 9953879

                                                                           
Query: 1543    ccaaaaggttggcagcccggtggccaacgccaggctgccgtcttatggtcccaagc-tgt 1601
               || | ||| ||||||||||||||||||||||||||||||||||||| || |||||| |||
Sbjct: 9953878 ccgagagggtggcagcccggtggccaacgccaggctgccgtcttat-gttccaagcttgt 9953820

                                                                           
Query: 1602    ttc-gtgggtgttttcgggcc-aacaaacagcacctttgcctggatttcgttgtctaatt 1659
               ||| ||| |||||||| |||| ||||||||||||| ||| ||||||||||||||||||||
Sbjct: 9953819 ttctgtgtgtgttttctggccaaacaaacagcaccattggctggatttcgttgtctaatt 9953760

                                                                           
Query: 1660    ctgatcaagccctgaaattcattggcagtgaacatccacagcccaaaatgggaagaaagc 1719
               ||||||||||||||||||||| |||||||||  ||||||||||  || ||||| ||||||
Sbjct: 9953759 ctgatcaagccctgaaattcagtggcagtgacaatccacagccagaagtgggaggaaagc 9953700

                
Query: 1720    t 1720
               |
Sbjct: 9953699 t 9953699



 Score =  341 bits (172), Expect = 8e-91
 Identities = 172/172 (100%)
 Strand = Plus / Minus

                                                                           
Query: 183     agaacaatgccaaggtagccgtgctgggggcttccggaggaatcgggcagcccctttcgc 242
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9962198 agaacaatgccaaggtagccgtgctgggggcttccggaggaatcgggcagcccctttcgc 9962139

                                                                           
Query: 243     ttctcctgaaaaacagccccttggtgagccgcctgaccctctacgatatcgcgcacacac 302
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9962138 ttctcctgaaaaacagccccttggtgagccgcctgaccctctacgatatcgcgcacacac 9962079

                                                                   
Query: 303     ccggagtggccgcggatctgagccacatcgagaccagagcgactgtgaaagg 354
               ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9962078 ccggagtggccgcggatctgagccacatcgagaccagagcgactgtgaaagg 9962027



 Score =  341 bits (172), Expect = 8e-91
 Identities = 181/184 (98%)
 Strand = Plus / Minus

                                                                           
Query: 1       gtctcgcgagacctggcggagcggagccgggaggacccgtgcagtgtggaggtcgttgga 60
               |||||||||||||||||||||||||||||||||| || ||| ||||||||||||||||||
Sbjct: 9965931 gtctcgcgagacctggcggagcggagccgggagggcctgtggagtgtggaggtcgttgga 9965872

                                                                           
Query: 61      gtcactttcttgctgccagctcgtttgccggccggtcctctccccgcacgccccagccat 120
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9965871 gtcactttcttgctgccagctcgtttgccggccggtcctctccccgcacgccccagccat 9965812

                                                                           
Query: 121     gctctccgccctcgcccggcctgccggcgccgctctccgccgcagcttcagcacctcggc 180
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9965811 gctctccgccctcgcccggcctgccggcgccgctctccgccgcagcttcagcacctcggc 9965752

                   
Query: 181     ccag 184
               ||||
Sbjct: 9965751 ccag 9965748



 Score =  281 bits (142), Expect = 6e-73
 Identities = 151/154 (98%)
 Strand = Plus / Minus

                                                                           
Query: 850     aggctctgccaccctgtccatggcatatgccggagcccggtttgtcttctccctcgtgga 909
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9955311 aggctctgccaccctgtccatggcatatgccggagcccggtttgtcttctccctcgtgga 9955252

                                                                           
Query: 910     tgcgatgaacgggaaggaaggtgttgtcgagtgttcctttgtcaagtcccaggaaacgga 969
               ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 9955251 tgcaatgaacgggaaggaaggcgttgtcgagtgttcctttgtcaagtcccaggaaacgga 9955192

                                                 
Query: 970     ctgtccgtatttctccacgccgttgctgctgggg 1003
               ||||||||||||||||||||| ||||||||||||
Sbjct: 9955191 ctgtccgtatttctccacgccattgctgctgggg 9955158



 Score =  254 bits (128), Expect = 1e-64
 Identities = 128/128 (100%)
 Strand = Plus / Minus

                                                                           
Query: 547     ggttaactccaccatcccaatcacggcggaggtcttcaagaaacacggcgtgtacaaccc 606
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9958941 ggttaactccaccatcccaatcacggcggaggtcttcaagaaacacggcgtgtacaaccc 9958882

                                                                           
Query: 607     caataaaatcttcggggtgacgaccctggacattgtccgagccaacgcttttgttgcaga 666
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9958881 caataaaatcttcggggtgacgaccctggacattgtccgagccaacgcttttgttgcaga 9958822

                       
Query: 667     gctgaagg 674
               ||||||||
Sbjct: 9958821 gctgaagg 9958814



 Score =  228 bits (115), Expect = 8e-57
 Identities = 115/115 (100%)
 Strand = Plus / Minus

                                                                           
Query: 435     caggcatgacacgggatgacctgttcaacaccaacgccaccatcgtggccaccctgacgg 494
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9960130 caggcatgacacgggatgacctgttcaacaccaacgccaccatcgtggccaccctgacgg 9960071

                                                                      
Query: 495     ctgcctgcgcccagcactgccccgacgccatgatctgcatcatttccaacccggt 549
               |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9960070 ctgcctgcgcccagcactgccccgacgccatgatctgcatcatttccaacccggt 9960016



 Score =  206 bits (104), Expect = 3e-50
 Identities = 104/104 (100%)
 Strand = Plus / Minus

                                                                           
Query: 749     cagtgcaccccgaaggtggactttccgcaggaccagctctccaccctcaccgggcgcatc 808
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9955682 cagtgcaccccgaaggtggactttccgcaggaccagctctccaccctcaccgggcgcatc 9955623

                                                           
Query: 809     caggaggccggcaccgaggtggtcaaggctaaggccggagcagg 852
               ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9955622 caggaggccggcaccgaggtggtcaaggctaaggccggagcagg 9955579



 Score =  172 bits (87), Expect = 4e-40
 Identities = 87/87 (100%)
 Strand = Plus / Minus

                                                                           
Query: 352     aggctacctcggacctgagcagctgccagactgcctgaagggctgcgatgtggtggttat 411
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9960674 aggctacctcggacctgagcagctgccagactgcctgaagggctgcgatgtggtggttat 9960615

                                          
Query: 412     tccagccggagtcccaagaaagccagg 438
               |||||||||||||||||||||||||||
Sbjct: 9960614 tccagccggagtcccaagaaagccagg 9960588



 Score =  159 bits (80), Expect = 6e-36
 Identities = 80/80 (100%)
 Strand = Plus / Minus

                                                                           
Query: 672     agggtttggacccggctcgagtcagcgttcccgtcattggcggccacgccgggaagacca 731
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9956740 agggtttggacccggctcgagtcagcgttcccgtcattggcggccacgccgggaagacca 9956681

                                   
Query: 732     tcatcccgctcatctctcag 751
               ||||||||||||||||||||
Sbjct: 9956680 tcatcccgctcatctctcag 9956661


>Sscrofa_Chr09 
||          Length = 153670197

 Score =  167 bits (84), Expect = 3e-38
 Identities = 117/128 (91%)
 Strand = Plus / Minus

                                                                             
Query: 9         agacctggcggagcggagccgggaggacccgtgcagtgtggaggtcgttggagtcacttt 68
                 ||||||||||||| |||||||||||| || |||||| |||||||||||||||||||||||
Sbjct: 144783373 agacctggcggaggggagccgggagggcctgtgcagggtggaggtcgttggagtcacttt 144783314

                                                                             
Query: 69        cttgctgccagctcgtttgccggccggtcctctccccgcacgccccagccatgctctccg 128
                 | |||||||||  | ||||||||||||||  |||||||||| ||||||||||||||||||
Sbjct: 144783313 cctgctgccagggcctttgccggccggtctgctccccgcacaccccagccatgctctccg 144783254

                         
Query: 129       ccctcgcc 136
                 ||||||||
Sbjct: 144783253 ccctcgcc 144783246


>Sscrofa_Chr05 
||          Length = 111506441

 Score = 89.7 bits (45), Expect = 5e-15
 Identities = 84/97 (86%)
 Strand = Plus / Plus

                                                                            
Query: 1034     ggcaaaatctccccttttgaagagaagatgatcgccgaggccattcctgagctgaaagcc 1093
                |||||||||| | |||||||||||||||||||  || ||| ||||||||| |||||||| 
Sbjct: 54122569 ggcaaaatcttctcttttgaagagaagatgataaccaaggtcattcctgacctgaaagct 54122628

                                                     
Query: 1094     tccatcaagaaaggagaggagtttgtcaagaacatga 1130
                ||  |||||||||||||  ||||||| ||||||||||
Sbjct: 54122629 tcagtcaagaaaggagaaaagtttgtaaagaacatga 54122665


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 42,819,323
Number of extensions: 273
Number of successful extensions: 273
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 271
Number of HSP's successfully gapped: 20
Length of query: 1720
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1698
Effective length of database: 2,808,408,574
Effective search space: 4768677758652
Effective search space used: 4768677758652
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)