Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002096
(1720 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001013605.1| malate dehydrogenase, mitochondrial [Bos tau... 355 7e-98
Alignment gi|NP_001106720.1| L-lactate dehydrogenase C isoform 1 [Bos tau... 59 2e-08
Alignment gi|NP_001039887.2| L-lactate dehydrogenase C isoform 2 [Bos tau... 54 3e-07
Alignment gi|NP_776525.1| L-lactate dehydrogenase B chain [Bos taurus]. 50 5e-06
Alignment gi|NP_001030352.1| L-lactate dehydrogenase A-like 6B [Bos tauru... 50 6e-06
>ref|NP_001013605.1| malate dehydrogenase, mitochondrial [Bos taurus].
Length = 278
Score = 355 bits (911), Expect = 7e-98
Identities = 177/180 (98%), Positives = 179/180 (99%)
Frame = +2
Query: 164 SFSTSAQNNAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRA 343
SFSTSAQNNAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRA
Sbjct: 16 SFSTSAQNNAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRA 75
Query: 344 TVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDA 523
TVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCP+A
Sbjct: 76 TVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPEA 135
Query: 524 MICIISNPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAELKGLDPARVSVP 703
MICIISNPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAELK LDPARV+VP
Sbjct: 136 MICIISNPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAELKDLDPARVNVP 195
Score = 70.5 bits (171), Expect = 4e-12
Identities = 36/83 (43%), Positives = 41/83 (49%)
Frame = +1
Query: 655 FCCRAEGFGPGSSQRSRHWRPRREDHHPAHLSVHPEGGLSAGPALXXXXXXXXXXXXXXX 834
F + P RH RPR E+HHP L VHP+GG+S GPA
Sbjct: 180 FVAELKDLDPARVNVPRHRRPRWENHHPLDLPVHPQGGISPGPADHPHRSDPGSWHRGGQ 239
Query: 835 XXXXSRLCHPVHGICRSPVCLLP 903
S LCHPVHGI SP+CLLP
Sbjct: 240 GEGRSGLCHPVHGIRWSPLCLLP 262
>ref|NP_001106720.1| L-lactate dehydrogenase C isoform 1 [Bos taurus].
Length = 332
Score = 58.5 bits (140), Expect = 2e-08
Identities = 69/299 (23%), Positives = 122/299 (40%), Gaps = 22/299 (7%)
Frame = +2
Query: 185 NNAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIA--HTPGVAADLSHIETRA-TVKG 355
+ +K+ ++G +G +G ++ + L L L D+ G DL H T K
Sbjct: 19 SQSKITIVG-TGAVGMACAICILLKDLADELALVDVVTDKLKGETMDLQHGSLFFNTPKI 77
Query: 356 YLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICI 535
G + +V+I AG ++ G +R +L N I+ ++ A Q+ PD + I
Sbjct: 78 VSGKDYTVSA--NSKLVIITAGARQQEGESRLNLVQRNVDIMKSVIPAIVQNSPDCKMLI 135
Query: 536 ISNPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAELKGLDPARVSVPVIGG 715
+SNPV+ +T V+K G+ I LD R + + G+ P+ +IG
Sbjct: 136 VSNPVDI---LTYVVWKLSGLPATRVIGSGCNLDSARFRYLIGQKLGVHPSSCHGWIIGE 192
Query: 716 HAGKTIIPL----------ISQCTPKV--DFPQDQLSTLTGRIQEAGTEVVKAKA----G 847
H G + +PL + PK+ D +D + + + E++K K G
Sbjct: 193 H-GDSSVPLWSGVNVAGVALKSLDPKLGSDSDKDSWKNIHKEVVGSAYEIIKLKGYTSWG 251
Query: 848 AGSATLSMAYA---GARFVFSLVDAMNGKEGVVECSFVKSQETDCPYFSTPLLLGKKGI 1015
G + + + R V + + G G+ E F+ S P +LG+ G+
Sbjct: 252 IGLSVTDLVKSILKNLRRVHPVSTMVKGSYGIKEEIFL----------SIPCVLGRNGV 300
>ref|NP_001039887.2| L-lactate dehydrogenase C isoform 2 [Bos taurus].
Length = 241
Score = 54.3 bits (129), Expect = 3e-07
Identities = 50/191 (26%), Positives = 85/191 (44%), Gaps = 3/191 (1%)
Frame = +2
Query: 185 NNAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIA--HTPGVAADLSHIETRA-TVKG 355
+ +K+ ++G +G +G ++ + L L L D+ G DL H T K
Sbjct: 19 SQSKITIVG-TGAVGMACAICILLKDLADELALVDVVTDKLKGETMDLQHGSLFFNTPKI 77
Query: 356 YLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICI 535
G + +V+I AG ++ G +R +L N I+ ++ A Q+ PD + I
Sbjct: 78 VSGKDYTVSA--NSKLVIITAGARQQEGESRLNLVQRNVDIMKSVIPAIVQNSPDCKMLI 135
Query: 536 ISNPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAELKGLDPARVSVPVIGG 715
+SNPV+ +T V+K G+ I LD R + + G+ P+ +IG
Sbjct: 136 VSNPVDI---LTYVVWKLSGLPATRVIGSGCNLDSARFRYLIGQKLGVHPSSCHGWIIGE 192
Query: 716 HAGKTIIPLIS 748
H G + +PL S
Sbjct: 193 H-GDSSVPLWS 202
>ref|NP_776525.1| L-lactate dehydrogenase B chain [Bos taurus].
Length = 334
Score = 50.4 bits (119), Expect = 5e-06
Identities = 42/184 (22%), Positives = 75/184 (40%), Gaps = 2/184 (1%)
Frame = +2
Query: 188 NAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTP--GVAADLSHIETRATVKGYL 361
N K+ V+G G +G ++ + L L L D+ G DL H +
Sbjct: 21 NNKITVVGV-GQVGMACAISILGKSLTDELALVDVLEDKLKGEMMDLQHGSLFLQTPKIV 79
Query: 362 GPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIIS 541
+ +VV+ AGV ++ G +R +L N + + ++ P +I ++S
Sbjct: 80 ADKDY-SVTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPACIIIVVS 138
Query: 542 NPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAELKGLDPARVSVPVIGGHA 721
NPV+ +T +K G+ I LD R +AE G+ P+ ++G H
Sbjct: 139 NPVDI---LTYVTWKLSGLPKHRVIGSGCNLDSARFRYLMAEKLGIHPSSCHGWILGEHG 195
Query: 722 GKTI 733
++
Sbjct: 196 DSSV 199
>ref|NP_001030352.1| L-lactate dehydrogenase A-like 6B [Bos taurus].
Length = 381
Score = 50.1 bits (118), Expect = 6e-06
Identities = 71/323 (21%), Positives = 128/323 (39%), Gaps = 23/323 (7%)
Frame = +2
Query: 188 NAKVAVLGA-SGGIGQPLSLLLKNSPLVSRLTLYDI--AHTPGVAADLSHIETRATVKGY 358
N+K++++G S G+ +S+LLK L L L D+ G DL H +
Sbjct: 69 NSKISIVGTGSVGMACAVSILLKG--LSDELALVDVDEGRLKGETMDLQHGSLFVKMPNI 126
Query: 359 LGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICII 538
+ ++V+I AG ++ G TR +L N I + ++ Q+ P + ++
Sbjct: 127 VSSRDYV-VTANSNLVIITAGARQEKGETRLNLVQRNVAIFKLMMSSIVQYSPRCKLIVV 185
Query: 539 SNPVNSTIPITAEVFKKHGVYNPNKIFGV-TTLDIVRANAFVAELKGLDPARVSVPVIGG 715
SNPV+ I V K + N++ G LD R + + + ++G
Sbjct: 186 SNPVD----ILTYVAWKLSAFPQNRVIGSGCNLDTARFRFLIGQRLSIHSESCHGWILGE 241
Query: 716 HAGKTIIPLIS------------QCTPKVDFPQDQLSTLTGRIQEAGTEVVKAKA----- 844
H G + +P+ S D +Q + + + E++K K
Sbjct: 242 H-GDSSVPVWSGVNIAGVPLKELNLDIGTDKDPEQWKNVHKDVVASAYEIIKMKGYTYWA 300
Query: 845 -GAGSATLSMA-YAGARFVFSLVDAMNGKEGVVECSFVKSQETDCPYFSTPLLLGKKGIE 1018
G A L+ + R V + + G G+ E F+ S P +LG+ GI
Sbjct: 301 IGLSVADLTESILKNLRRVHPVSTRIKGLYGINEEVFL----------SVPCILGESGIT 350
Query: 1019 KNLGIGKISPFEEKMIAEAIPEL 1087
+ + K++P EE + ++ L
Sbjct: 351 DLIKV-KLAPEEEARLQKSAKTL 372
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 67,956,426
Number of extensions: 1919045
Number of successful extensions: 7368
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 7344
Number of HSP's successfully gapped: 6
Length of query: 573
Length of database: 17,681,374
Length adjustment: 108
Effective length of query: 465
Effective length of database: 14,107,870
Effective search space: 6560159550
Effective search space used: 6560159550
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002096
(1720 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_849944.1| PREDICTED: similar to malate dehydrogenase, mit... 613 e-175
Alignment gi|XP_539718.1| PREDICTED: similar to malate dehydrogenase 2, N... 553 e-157
Alignment gi|XP_851105.1| PREDICTED: similar to malate dehydrogenase, mit... 447 e-136
Alignment gi|XP_849858.1| PREDICTED: similar to malate dehydrogenase, mit... 434 e-121
Alignment gi|XP_850818.1| PREDICTED: similar to mitochondrial malate dehy... 319 e-100
Alignment gi|XP_852803.1| PREDICTED: similar to Malate dehydrogenase, mit... 267 2e-71
Alignment gi|XP_851705.1| PREDICTED: similar to malate dehydrogenase, mit... 213 4e-55
Alignment gi|XP_534085.2| PREDICTED: similar to lactate dehydrogenase C [... 63 1e-09
Alignment gi|XP_848921.1| PREDICTED: similar to L-lactate dehydrogenase B... 55 2e-07
Alignment gi|XP_534868.1| PREDICTED: similar to L-lactate dehydrogenase B... 54 6e-07
>ref|XP_849944.1| PREDICTED: similar to malate dehydrogenase, mitochondrial [Canis
familiaris].
Length = 338
Score = 613 bits (1580), Expect = e-175
Identities = 306/323 (94%), Positives = 315/323 (97%)
Frame = +2
Query: 164 SFSTSAQNNAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRA 343
SFSTSAQNNAKVAVLGASGGIGQPL+LLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRA
Sbjct: 16 SFSTSAQNNAKVAVLGASGGIGQPLALLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRA 75
Query: 344 TVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDA 523
TVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNA+IVATLTAACAQHCP+A
Sbjct: 76 TVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNASIVATLTAACAQHCPEA 135
Query: 524 MICIISNPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAELKGLDPARVSVP 703
MIC+ISNPVNSTIPI EVFKKHG Y+PNKIFGVTTLDIVRAN F+AELKGLDPARV+VP
Sbjct: 136 MICVISNPVNSTIPIATEVFKKHGAYDPNKIFGVTTLDIVRANTFIAELKGLDPARVNVP 195
Query: 704 VIGGHAGKTIIPLISQCTPKVDFPQDQLSTLTGRIQEAGTEVVKAKAGAGSATLSMAYAG 883
VIGGHAGKTIIPLISQCTPKVD PQDQL+ +TGRIQEAGTEVVKAKAGAGSATLSMAYAG
Sbjct: 196 VIGGHAGKTIIPLISQCTPKVDLPQDQLTAVTGRIQEAGTEVVKAKAGAGSATLSMAYAG 255
Query: 884 ARFVFSLVDAMNGKEGVVECSFVKSQETDCPYFSTPLLLGKKGIEKNLGIGKISPFEEKM 1063
ARFVFSLVDAMNGKEGVVECSFVKSQE DC YFSTPLLLGKKGIEKNLGIGKISPFEEKM
Sbjct: 256 ARFVFSLVDAMNGKEGVVECSFVKSQEADCAYFSTPLLLGKKGIEKNLGIGKISPFEEKM 315
Query: 1064 IAEAIPELKASIKKGEEFVKNMK 1132
IAEAIPELKASIKKGEEFVKNMK
Sbjct: 316 IAEAIPELKASIKKGEEFVKNMK 338
>ref|XP_539718.1| PREDICTED: similar to malate dehydrogenase 2, NAD (mitochondrial)
[Canis familiaris].
Length = 328
Score = 553 bits (1424), Expect = e-157
Identities = 282/323 (87%), Positives = 295/323 (91%)
Frame = +2
Query: 164 SFSTSAQNNAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRA 343
S STSAQNNAKVAVLGASGGI Q +VS LTLYDIAHTP VAADLSHIETRA
Sbjct: 16 SVSTSAQNNAKVAVLGASGGIRQ----------IVSCLTLYDIAHTPRVAADLSHIETRA 65
Query: 344 TVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDA 523
TVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFN NA+IV TLTAACAQHCP+A
Sbjct: 66 TVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNINASIVDTLTAACAQHCPEA 125
Query: 524 MICIISNPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAELKGLDPARVSVP 703
+IC+ISNPVNSTIPI EVFKKHG Y+ NKIFGVTTLDIVRAN F AELKGLDPAR +VP
Sbjct: 126 VICVISNPVNSTIPIATEVFKKHGAYDSNKIFGVTTLDIVRANTFTAELKGLDPARANVP 185
Query: 704 VIGGHAGKTIIPLISQCTPKVDFPQDQLSTLTGRIQEAGTEVVKAKAGAGSATLSMAYAG 883
VIGGHAGKTIIPLISQCTPKVD PQDQL+ +TG+IQEAGTEVVKAKAGAGSATLSMAYAG
Sbjct: 186 VIGGHAGKTIIPLISQCTPKVDLPQDQLTAVTGQIQEAGTEVVKAKAGAGSATLSMAYAG 245
Query: 884 ARFVFSLVDAMNGKEGVVECSFVKSQETDCPYFSTPLLLGKKGIEKNLGIGKISPFEEKM 1063
ARFVFSLVDA+NGKEG+VECSFVKSQ+TD YFSTPLLL KKGIEKNLGIGKISPFEEKM
Sbjct: 246 ARFVFSLVDAVNGKEGIVECSFVKSQDTDSDYFSTPLLLEKKGIEKNLGIGKISPFEEKM 305
Query: 1064 IAEAIPELKASIKKGEEFVKNMK 1132
IAEAIPELKASIKKGEEFVKNMK
Sbjct: 306 IAEAIPELKASIKKGEEFVKNMK 328
>ref|XP_851105.1| PREDICTED: similar to malate dehydrogenase, mitochondrial [Canis
familiaris].
Length = 369
Score = 447 bits (1150), Expect(2) = e-136
Identities = 220/250 (88%), Positives = 231/250 (92%)
Frame = +2
Query: 383 CLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNPVNSTI 562
CLKGCD VV PAGVPRKPGMTRDDL +TNA+ VAT TAACAQHCP+A+IC+ISNPVNSTI
Sbjct: 120 CLKGCDAVVTPAGVPRKPGMTRDDLLSTNASAVATWTAACAQHCPEAIICVISNPVNSTI 179
Query: 563 PITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAELKGLDPARVSVPVIGGHAGKTIIPL 742
PI EVFKKHG Y+P KIFG TTLDIVRAN F AELKGLDPARV+VPV GGHAGKTI+PL
Sbjct: 180 PIATEVFKKHGAYDPKKIFGATTLDIVRANTFTAELKGLDPARVNVPVTGGHAGKTIVPL 239
Query: 743 ISQCTPKVDFPQDQLSTLTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFVFSLVDAMNG 922
ISQCTPKVD PQD L+ +TGRIQEAGTEVVKAKA AGSATLSMAYAGARFVFSLVDAMNG
Sbjct: 240 ISQCTPKVDLPQDPLTAVTGRIQEAGTEVVKAKAAAGSATLSMAYAGARFVFSLVDAMNG 299
Query: 923 KEGVVECSFVKSQETDCPYFSTPLLLGKKGIEKNLGIGKISPFEEKMIAEAIPELKASIK 1102
KEGVVECSFVK+QE DC YFSTPLLLGKKGIEKNLGIGKISPFEEKMIAEAIPELKASIK
Sbjct: 300 KEGVVECSFVKAQEADCAYFSTPLLLGKKGIEKNLGIGKISPFEEKMIAEAIPELKASIK 359
Query: 1103 KGEEFVKNMK 1132
KGEEFVKNMK
Sbjct: 360 KGEEFVKNMK 369
Score = 57.0 bits (136), Expect(2) = e-136
Identities = 36/71 (50%), Positives = 42/71 (59%)
Frame = +1
Query: 181 PEQCQGSRAGGFRRNRAAPFASPEKQPLGEPPDPLRYRAHTRSGRGSEPHRDQSDCERLP 360
P S A GFR N AAP A+ ++QPLG H RSGR SEPHRDQS+ ER P
Sbjct: 54 PRTSSSSCAWGFRGNWAAPCAASQEQPLGSRLSLWILLIH-RSGRRSEPHRDQSNRERPP 112
Query: 361 RT*AAARLPEG 393
+T AAA +G
Sbjct: 113 QTCAAAGCLKG 123
>ref|XP_849858.1| PREDICTED: similar to malate dehydrogenase, mitochondrial [Canis
familiaris].
Length = 259
Score = 434 bits (1115), Expect = e-121
Identities = 220/271 (81%), Positives = 238/271 (87%)
Frame = +2
Query: 320 LSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAA 499
+SHIETRATVKG+LGPEQLPD LKGCD VV PAGVPRKPG+TRDDL +T A+
Sbjct: 1 MSHIETRATVKGHLGPEQLPDGLKGCDAVVTPAGVPRKPGVTRDDLLSTGAS-------- 52
Query: 500 CAQHCPDAMICIISNPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAELKGL 679
HCP+A IC+ISNPVNSTIP+ EVFKKHG Y+PNKIFGVTTLDIVRAN F+AELKGL
Sbjct: 53 ---HCPEARICVISNPVNSTIPMATEVFKKHGAYDPNKIFGVTTLDIVRANTFIAELKGL 109
Query: 680 DPARVSVPVIGGHAGKTIIPLISQCTPKVDFPQDQLSTLTGRIQEAGTEVVKAKAGAGSA 859
DPARV+VPV GGHAGKTI+PL+SQ TPKVD PQD L+ + GRIQEAG+EVVKAKA AGSA
Sbjct: 110 DPARVNVPVTGGHAGKTIVPLMSQRTPKVDLPQDPLTAVAGRIQEAGSEVVKAKAAAGSA 169
Query: 860 TLSMAYAGARFVFSLVDAMNGKEGVVECSFVKSQETDCPYFSTPLLLGKKGIEKNLGIGK 1039
TLSMAYAGARFVFSLVDAMNGKEGV ECSFVKS+E DC YFSTPLLLGKKGIEKNLGIGK
Sbjct: 170 TLSMAYAGARFVFSLVDAMNGKEGVGECSFVKSREADCAYFSTPLLLGKKGIEKNLGIGK 229
Query: 1040 ISPFEEKMIAEAIPELKASIKKGEEFVKNMK 1132
ISPFEE MIAEAI ELKASI+KGEEFVKNMK
Sbjct: 230 ISPFEE-MIAEAIAELKASIEKGEEFVKNMK 259
>ref|XP_850818.1| PREDICTED: similar to mitochondrial malate dehydrogenase precursor
[Canis familiaris].
Length = 278
Score = 319 bits (818), Expect(2) = e-100
Identities = 153/184 (83%), Positives = 170/184 (92%)
Frame = +2
Query: 311 AADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATL 490
AADLSHIETRATVKG+LGP QLP CLKGCD VVIPAGVPRKPG+TRDDLF+T A++VAT
Sbjct: 40 AADLSHIETRATVKGHLGPAQLPGCLKGCDAVVIPAGVPRKPGVTRDDLFSTGASVVATR 99
Query: 491 TAACAQHCPDAMICIISNPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAEL 670
TAACAQHCP+AMIC+ISNPVNSTIP+ EVFKKHG Y+P+KIFGVTTLDIVRAN F+AEL
Sbjct: 100 TAACAQHCPEAMICVISNPVNSTIPMATEVFKKHGAYDPSKIFGVTTLDIVRANTFIAEL 159
Query: 671 KGLDPARVSVPVIGGHAGKTIIPLISQCTPKVDFPQDQLSTLTGRIQEAGTEVVKAKAGA 850
KGLDPARV+VPVIGGHAGKTI+PL+SQ TPKVD PQD L+ + GRIQEAGTEV+KAKAGA
Sbjct: 160 KGLDPARVNVPVIGGHAGKTIVPLMSQRTPKVDLPQDPLTAVAGRIQEAGTEVLKAKAGA 219
Query: 851 GSAT 862
GSAT
Sbjct: 220 GSAT 223
Score = 67.4 bits (163), Expect(2) = e-100
Identities = 31/46 (67%), Positives = 34/46 (73%)
Frame = +3
Query: 867 PWHMPEPGLSSPSWMR*TGRKVLSSVPLSSPRKRTVRISPRRCCWG 1004
PWH E GLSSP WM+ GRK LS+VPL SPRK+TV ISP CWG
Sbjct: 226 PWHTLELGLSSPLWMQRMGRKELSNVPLLSPRKQTVPISPHHYCWG 271
>ref|XP_852803.1| PREDICTED: similar to Malate dehydrogenase, mitochondrial precursor
[Canis familiaris].
Length = 245
Score = 267 bits (683), Expect = 2e-71
Identities = 146/221 (66%), Positives = 158/221 (71%), Gaps = 2/221 (0%)
Frame = +2
Query: 425 PRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNPVNSTIPITAEVFKKHGVYN 604
PRKPGMTRDDLFNTNA++VAT TAACAQHCP+AMIC+ISNPVNSTIPI EVFKKHG Y+
Sbjct: 61 PRKPGMTRDDLFNTNASVVATPTAACAQHCPEAMICVISNPVNSTIPIATEVFKKHGAYD 120
Query: 605 PNKIFGVTTLDIVRANAFVAELKGLDPARVSVPVIGGHAGKTIIPLISQCTPKVDFPQDQ 784
PNKIF VTTLDIVRAN F+AEL G PA
Sbjct: 121 PNKIFRVTTLDIVRANTFIAELNG--PA-------------------------------- 146
Query: 785 LSTLTGRIQEAGTEVVKAKAGAGSATLSMAY--AGARFVFSLVDAMNGKEGVVECSFVKS 958
+TG IQEA TEV + + S + AGA+FVFSLVDAMNGKEG VECSFVKS
Sbjct: 147 ---ITGLIQEACTEVASFEGQSWSRLCHPVHGRAGAQFVFSLVDAMNGKEGDVECSFVKS 203
Query: 959 QETDCPYFSTPLLLGKKGIEKNLGIGKISPFEEKMIAEAIP 1081
QE DC YFSTPLLLG+KGIEKNLGIGKISPFEEKMIAEAIP
Sbjct: 204 QEADCAYFSTPLLLGEKGIEKNLGIGKISPFEEKMIAEAIP 244
>ref|XP_851705.1| PREDICTED: similar to malate dehydrogenase, mitochondrial [Canis
familiaris].
Length = 113
Score = 213 bits (543), Expect = 4e-55
Identities = 109/113 (96%), Positives = 110/113 (97%)
Frame = +2
Query: 794 LTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFVFSLVDAMNGKEGVVECSFVKSQETDC 973
+TGRIQEAGTEVVKAKAGAGSATLSMAYAGARFVFSLVDAMNGKEGVVECSFVKSQE DC
Sbjct: 1 MTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFVFSLVDAMNGKEGVVECSFVKSQEADC 60
Query: 974 PYFSTPLLLGKKGIEKNLGIGKISPFEEKMIAEAIPELKASIKKGEEFVKNMK 1132
YFSTPLLLGKK IEKNLGIGKISPFEEKMIAEAIPELKASIKKGEEFVKNMK
Sbjct: 61 AYFSTPLLLGKKDIEKNLGIGKISPFEEKMIAEAIPELKASIKKGEEFVKNMK 113
>ref|XP_534085.2| PREDICTED: similar to lactate dehydrogenase C [Canis familiaris].
Length = 420
Score = 62.8 bits (151), Expect = 1e-09
Identities = 70/296 (23%), Positives = 119/296 (40%), Gaps = 22/296 (7%)
Frame = +2
Query: 194 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIA--HTPGVAADLSHIETRATVKGYLGP 367
K+ ++G +G +G ++ + L L L D+A G DL H
Sbjct: 110 KITIVG-TGAVGMACAICILLKDLADELALVDVAVDKLKGETMDLQHGSLFFNTSKITSG 168
Query: 368 EQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNP 547
+ +V++ AG ++ G +R L N I+ ++ A QH PD + I+SNP
Sbjct: 169 KDY-SVSANSKLVIVTAGARQQEGESRLALVQRNVNIMKSIIPAIVQHSPDCKMLIVSNP 227
Query: 548 VNSTIPITAEVFKKHGVYNPNKIFGV-TTLDIVRANAFVAELKGLDPARVSVPVIGGHAG 724
V+ +T V+K G+ ++FG LD R + E G+ P +IG H G
Sbjct: 228 VDI---LTYVVWKLSGL-PATRVFGSGCNLDSARFRYLIGEKLGVHPTSCHGWIIGEH-G 282
Query: 725 KTIIPL----------ISQCTPKV--DFPQDQLSTLTGRIQEAGTEVVKAKAGAGSA--- 859
+ +PL + PK+ D +DQ + ++ E+ E++K K A
Sbjct: 283 DSSVPLWSGVNVAGVALKTLDPKLGTDADKDQWKNIHKQVVESAYEIIKLKGYTSWAIGL 342
Query: 860 ----TLSMAYAGARFVFSLVDAMNGKEGVVECSFVKSQETDCPYFSTPLLLGKKGI 1015
+ R V + + G G+ E F+ S P +LG+ G+
Sbjct: 343 SVTDLVGSVLKNLRRVHPVSTMVKGLYGIKEEIFL----------SIPCVLGQNGV 388
>ref|XP_848921.1| PREDICTED: similar to L-lactate dehydrogenase B chain (LDH-B) (LDH
heart subunit) (LDH-H) isoform 2 [Canis familiaris].
Length = 223
Score = 55.1 bits (131), Expect = 2e-07
Identities = 45/188 (23%), Positives = 82/188 (43%), Gaps = 6/188 (3%)
Frame = +2
Query: 188 NAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTP--GVAADLSH----IETRATV 349
N K+ V+G G +G ++ + L L L ++ G DL H ++T V
Sbjct: 20 NNKITVVGV-GQVGMACAISILGKSLADELALVNVLEDKLKGEMMDLQHGSLFLQTPKIV 78
Query: 350 KGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMI 529
P++ +VV+ AGV ++ G +R +L N + + ++ PD +I
Sbjct: 79 -----PDKDYSVTANSKIVVVTAGVHQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCII 133
Query: 530 CIISNPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAELKGLDPARVSVPVI 709
++SNP++ +T +K G+ I LD R F+AE G+ P+ ++
Sbjct: 134 IVVSNPMDI---LTYVTWKLSGLPKHRVIGSGCNLDSARFRYFMAEKFGIHPSSYHGWIL 190
Query: 710 GGHAGKTI 733
G H ++
Sbjct: 191 GEHGDSSV 198
>ref|XP_534868.1| PREDICTED: similar to L-lactate dehydrogenase B chain (LDH-B) (LDH
heart subunit) (LDH-H) [Canis familiaris].
Length = 334
Score = 53.5 bits (127), Expect = 6e-07
Identities = 43/184 (23%), Positives = 76/184 (41%), Gaps = 2/184 (1%)
Frame = +2
Query: 188 NAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTP--GVAADLSHIETRATVKGYL 361
N K+ V+G G +G ++ + L L L D+ G DL H +
Sbjct: 21 NNKITVVGV-GQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIV 79
Query: 362 GPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIIS 541
+ +VV+ AGV ++ G +R +L N + + ++ PD +I ++S
Sbjct: 80 ADKDY-SVTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVS 138
Query: 542 NPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAELKGLDPARVSVPVIGGHA 721
NPV+ +T +K G+ I LD R +AE G+ P+ ++G H
Sbjct: 139 NPVDI---LTYVTWKLSGLPKHRVIGSGCNLDSARFRYLMAEKLGIHPSSCHGWILGEHG 195
Query: 722 GKTI 733
++
Sbjct: 196 DSSV 199
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 71,032,900
Number of extensions: 1985919
Number of successful extensions: 7845
Number of sequences better than 1.0e-05: 17
Number of HSP's gapped: 7815
Number of HSP's successfully gapped: 19
Length of query: 573
Length of database: 18,874,504
Length adjustment: 108
Effective length of query: 465
Effective length of database: 15,274,216
Effective search space: 7102510440
Effective search space used: 7102510440
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002096
(1720 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_005909.2| malate dehydrogenase, mitochondrial precursor [... 612 e-175
Alignment gi|NP_059144.1| L-lactate dehydrogenase C chain [Homo sapiens]. 58 3e-08
Alignment gi|NP_002292.1| L-lactate dehydrogenase C chain [Homo sapiens]. 58 3e-08
Alignment gi|NP_149972.1| L-lactate dehydrogenase A-like 6B [Homo sapiens]. 54 4e-07
Alignment gi|NP_001167568.1| L-lactate dehydrogenase B chain [Homo sapien... 54 6e-07
Alignment gi|NP_002291.1| L-lactate dehydrogenase B chain [Homo sapiens]. 54 6e-07
>ref|NP_005909.2| malate dehydrogenase, mitochondrial precursor [Homo sapiens].
Length = 338
Score = 612 bits (1578), Expect = e-175
Identities = 305/323 (94%), Positives = 317/323 (98%)
Frame = +2
Query: 164 SFSTSAQNNAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRA 343
SFSTSAQNNAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIET+A
Sbjct: 16 SFSTSAQNNAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETKA 75
Query: 344 TVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDA 523
VKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCP+A
Sbjct: 76 AVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPEA 135
Query: 524 MICIISNPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAELKGLDPARVSVP 703
MIC+I+NPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRAN FVAELKGLDPARV+VP
Sbjct: 136 MICVIANPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANTFVAELKGLDPARVNVP 195
Query: 704 VIGGHAGKTIIPLISQCTPKVDFPQDQLSTLTGRIQEAGTEVVKAKAGAGSATLSMAYAG 883
VIGGHAGKTIIPLISQCTPKVDFPQDQL+ LTGRIQEAGTEVVKAKAGAGSATLSMAYAG
Sbjct: 196 VIGGHAGKTIIPLISQCTPKVDFPQDQLTALTGRIQEAGTEVVKAKAGAGSATLSMAYAG 255
Query: 884 ARFVFSLVDAMNGKEGVVECSFVKSQETDCPYFSTPLLLGKKGIEKNLGIGKISPFEEKM 1063
ARFVFSLVDAMNGKEGVVECSFVKSQET+C YFSTPLLLGKKGIEKNLGIGK+S FEEKM
Sbjct: 256 ARFVFSLVDAMNGKEGVVECSFVKSQETECTYFSTPLLLGKKGIEKNLGIGKVSSFEEKM 315
Query: 1064 IAEAIPELKASIKKGEEFVKNMK 1132
I++AIPELKASIKKGE+FVK +K
Sbjct: 316 ISDAIPELKASIKKGEDFVKTLK 338
>ref|NP_059144.1| L-lactate dehydrogenase C chain [Homo sapiens].
Length = 332
Score = 57.8 bits (138), Expect = 3e-08
Identities = 78/330 (23%), Positives = 136/330 (41%), Gaps = 23/330 (6%)
Frame = +2
Query: 185 NNAKVAVLGASG-GIGQPLSLLLKNSPLVSRLTLYDIA--HTPGVAADLSHIETR-ATVK 352
+ K+ ++G G+ +S+LLK+ L L L D+A G DL H +T K
Sbjct: 19 SQCKITIVGTGAVGMACAISILLKD--LADELALVDVALDKLKGEMMDLQHGSLFFSTSK 76
Query: 353 GYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMIC 532
G + +V++ AG ++ G TR L N I+ ++ A + PD I
Sbjct: 77 ITSGKDYSVSA--NSRIVIVTAGARQQEGETRLALVQRNVAIMKSIIPAIVHYSPDCKIL 134
Query: 533 IISNPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAELKGLDPARVSVPVIG 712
++SNPV+ +T V+K G+ I LD R + E G+ P +IG
Sbjct: 135 VVSNPVDI---LTYIVWKISGLPVTRVIGSGCNLDSARFRYLIGEKLGVHPTSCHGWIIG 191
Query: 713 GHAGKTIIPL----------ISQCTPKV--DFPQDQLSTLTGRIQEAGTEVVKAKA---- 844
H G + +PL + PK+ D ++ + ++ ++ E++K K
Sbjct: 192 EH-GDSSVPLWSGVNVAGVALKTLDPKLGTDSDKEHWKNIHKQVIQSAYEIIKLKGYTSW 250
Query: 845 GAGSATLSMA---YAGARFVFSLVDAMNGKEGVVECSFVKSQETDCPYFSTPLLLGKKGI 1015
G + + + R V + + G G+ E F+ S P +LG+ G+
Sbjct: 251 AIGLSVMDLVGSILKNLRRVHPVSTMVKGLYGIKEELFL----------SIPCVLGRNGV 300
Query: 1016 EKNLGIGKISPFEEKMIAEAIPELKASIKK 1105
+ I S EE+ + + E +I+K
Sbjct: 301 SDVVKINLNS--EEEALFKKSAETLWNIQK 328
>ref|NP_002292.1| L-lactate dehydrogenase C chain [Homo sapiens].
Length = 332
Score = 57.8 bits (138), Expect = 3e-08
Identities = 78/330 (23%), Positives = 136/330 (41%), Gaps = 23/330 (6%)
Frame = +2
Query: 185 NNAKVAVLGASG-GIGQPLSLLLKNSPLVSRLTLYDIA--HTPGVAADLSHIETR-ATVK 352
+ K+ ++G G+ +S+LLK+ L L L D+A G DL H +T K
Sbjct: 19 SQCKITIVGTGAVGMACAISILLKD--LADELALVDVALDKLKGEMMDLQHGSLFFSTSK 76
Query: 353 GYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMIC 532
G + +V++ AG ++ G TR L N I+ ++ A + PD I
Sbjct: 77 ITSGKDYSVSA--NSRIVIVTAGARQQEGETRLALVQRNVAIMKSIIPAIVHYSPDCKIL 134
Query: 533 IISNPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAELKGLDPARVSVPVIG 712
++SNPV+ +T V+K G+ I LD R + E G+ P +IG
Sbjct: 135 VVSNPVDI---LTYIVWKISGLPVTRVIGSGCNLDSARFRYLIGEKLGVHPTSCHGWIIG 191
Query: 713 GHAGKTIIPL----------ISQCTPKV--DFPQDQLSTLTGRIQEAGTEVVKAKA---- 844
H G + +PL + PK+ D ++ + ++ ++ E++K K
Sbjct: 192 EH-GDSSVPLWSGVNVAGVALKTLDPKLGTDSDKEHWKNIHKQVIQSAYEIIKLKGYTSW 250
Query: 845 GAGSATLSMA---YAGARFVFSLVDAMNGKEGVVECSFVKSQETDCPYFSTPLLLGKKGI 1015
G + + + R V + + G G+ E F+ S P +LG+ G+
Sbjct: 251 AIGLSVMDLVGSILKNLRRVHPVSTMVKGLYGIKEELFL----------SIPCVLGRNGV 300
Query: 1016 EKNLGIGKISPFEEKMIAEAIPELKASIKK 1105
+ I S EE+ + + E +I+K
Sbjct: 301 SDVVKINLNS--EEEALFKKSAETLWNIQK 328
>ref|NP_149972.1| L-lactate dehydrogenase A-like 6B [Homo sapiens].
Length = 381
Score = 53.9 bits (128), Expect = 4e-07
Identities = 75/326 (23%), Positives = 138/326 (42%), Gaps = 20/326 (6%)
Frame = +2
Query: 185 NNAKVAVLGA-SGGIGQPLSLLLKNSPLVSRLTLYDIAHTP--GVAADLSHIETRATVKG 355
+++KV+++G S G+ +S+LLK L L L D+ G DL H +
Sbjct: 68 HHSKVSIIGTGSVGMACAISILLKG--LSDELALVDLDEDKLKGETMDLQHGSPFTKMPN 125
Query: 356 YLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICI 535
+ + ++V+I AG ++ G TR +L N I + ++ Q+ P + I
Sbjct: 126 IVCSKDY-FVTANSNLVIITAGARQEKGETRLNLVQRNVAIFKLMISSIVQYSPHCKLII 184
Query: 536 ISNPVNSTIPITAEVFKKHGVYNPNKIFGV-TTLDIVRANAFVAELKGLDPARVSVPVIG 712
+SNPV+ I V K + N+I G LD R + + G+ ++G
Sbjct: 185 VSNPVD----ILTYVAWKLSAFPKNRIIGSGCNLDTARFRFLIGQKLGIHSESCHGWILG 240
Query: 713 GHAGKTIIPLISQC----TPKVDFPQD--------QLSTLTGRIQEAGTEVVKAKAGAGS 856
H G + +P+ S P D D Q + + E++K K G S
Sbjct: 241 EH-GDSSVPVWSGVNIAGVPLKDLNSDIGTDKDPEQWKNVHKEVTATAYEIIKMK-GYTS 298
Query: 857 ATLSMAYAG-ARFVFSLVDAMNGKEGVVECSFVKSQETDCPYFSTPLLLGKKGIEKNLGI 1033
+ ++ A + + ++ +++ + +E + S P +LG+ GI + I
Sbjct: 299 WAIGLSVADLTESILKNLRRIHPVSTIIKGLYGIDEEV---FLSIPCILGENGITNLIKI 355
Query: 1034 GKISPFEE---KMIAEAIPELKASIK 1102
K++P EE K A+ + E++ +K
Sbjct: 356 -KLTPEEEAHLKKSAKTLWEIQNKLK 380
>ref|NP_001167568.1| L-lactate dehydrogenase B chain [Homo sapiens].
Length = 334
Score = 53.5 bits (127), Expect = 6e-07
Identities = 43/184 (23%), Positives = 76/184 (41%), Gaps = 2/184 (1%)
Frame = +2
Query: 188 NAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTP--GVAADLSHIETRATVKGYL 361
N K+ V+G G +G ++ + L L L D+ G DL H +
Sbjct: 21 NNKITVVGV-GQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIV 79
Query: 362 GPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIIS 541
+ +VV+ AGV ++ G +R +L N + + ++ PD +I ++S
Sbjct: 80 ADKDY-SVTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVS 138
Query: 542 NPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAELKGLDPARVSVPVIGGHA 721
NPV+ +T +K G+ I LD R +AE G+ P+ ++G H
Sbjct: 139 NPVDI---LTYVTWKLSGLPKHRVIGSGCNLDSARFRYLMAEKLGIHPSSCHGWILGEHG 195
Query: 722 GKTI 733
++
Sbjct: 196 DSSV 199
>ref|NP_002291.1| L-lactate dehydrogenase B chain [Homo sapiens].
Length = 334
Score = 53.5 bits (127), Expect = 6e-07
Identities = 43/184 (23%), Positives = 76/184 (41%), Gaps = 2/184 (1%)
Frame = +2
Query: 188 NAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTP--GVAADLSHIETRATVKGYL 361
N K+ V+G G +G ++ + L L L D+ G DL H +
Sbjct: 21 NNKITVVGV-GQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIV 79
Query: 362 GPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIIS 541
+ +VV+ AGV ++ G +R +L N + + ++ PD +I ++S
Sbjct: 80 ADKDY-SVTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVS 138
Query: 542 NPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAELKGLDPARVSVPVIGGHA 721
NPV+ +T +K G+ I LD R +AE G+ P+ ++G H
Sbjct: 139 NPVDI---LTYVTWKLSGLPKHRVIGSGCNLDSARFRYLMAEKLGIHPSSCHGWILGEHG 195
Query: 722 GKTI 733
++
Sbjct: 196 DSSV 199
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 69,608,590
Number of extensions: 1940446
Number of successful extensions: 7390
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 7375
Number of HSP's successfully gapped: 6
Length of query: 573
Length of database: 18,297,164
Length adjustment: 108
Effective length of query: 465
Effective length of database: 14,737,052
Effective search space: 6852729180
Effective search space used: 6852729180
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002096
(1720 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_032643.2| malate dehydrogenase, mitochondrial precursor [... 619 e-177
Alignment gi|NP_038608.1| L-lactate dehydrogenase C chain [Mus musculus]. 57 6e-08
Alignment gi|NP_032518.1| L-lactate dehydrogenase B chain [Mus musculus]. 53 6e-07
Alignment gi|XP_904967.1| PREDICTED: l-lactate dehydrogenase B chain-like... 50 4e-06
>ref|NP_032643.2| malate dehydrogenase, mitochondrial precursor [Mus musculus].
Length = 338
Score = 619 bits (1597), Expect = e-177
Identities = 309/323 (95%), Positives = 320/323 (99%)
Frame = +2
Query: 164 SFSTSAQNNAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRA 343
SFSTSAQNNAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRA
Sbjct: 16 SFSTSAQNNAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRA 75
Query: 344 TVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDA 523
VKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCP+A
Sbjct: 76 NVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPEA 135
Query: 524 MICIISNPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAELKGLDPARVSVP 703
M+CII+NPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRAN FVAELKGLDPARV+VP
Sbjct: 136 MVCIIANPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANTFVAELKGLDPARVNVP 195
Query: 704 VIGGHAGKTIIPLISQCTPKVDFPQDQLSTLTGRIQEAGTEVVKAKAGAGSATLSMAYAG 883
VIGGHAGKTIIPLISQCTPKVDFPQDQL+TLTGRIQEAGTEVVKAKAGAGSATLSMAYAG
Sbjct: 196 VIGGHAGKTIIPLISQCTPKVDFPQDQLATLTGRIQEAGTEVVKAKAGAGSATLSMAYAG 255
Query: 884 ARFVFSLVDAMNGKEGVVECSFVKSQETDCPYFSTPLLLGKKGIEKNLGIGKISPFEEKM 1063
ARFVFSLVDAMNGKEGVVECSFV+S+ET+C YFSTPLLLGKKG+EKNLGIGKI+PFEEKM
Sbjct: 256 ARFVFSLVDAMNGKEGVVECSFVQSKETECTYFSTPLLLGKKGLEKNLGIGKITPFEEKM 315
Query: 1064 IAEAIPELKASIKKGEEFVKNMK 1132
IAEAIPELKASIKKGE+FVKNMK
Sbjct: 316 IAEAIPELKASIKKGEDFVKNMK 338
>ref|NP_038608.1| L-lactate dehydrogenase C chain [Mus musculus].
Length = 332
Score = 56.6 bits (135), Expect = 6e-08
Identities = 73/298 (24%), Positives = 117/298 (39%), Gaps = 21/298 (7%)
Frame = +2
Query: 185 NNAKVAVLGASG-GIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIET-RATVKGY 358
+ K+ V+G G+ +S+LLK L D G A DL H +T K
Sbjct: 19 SRCKITVVGVGNVGMACAISILLKGLADELALVDADTNKLRGEALDLLHGSLFLSTPKIV 78
Query: 359 LGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICII 538
G + + +V+I AG G TR DL N I+ + Q+ PD I I+
Sbjct: 79 FGKDY--NVSANSKLVIITAGARMVSGETRLDLLQRNVAIMKAIVPGIVQNSPDCKIIIV 136
Query: 539 SNPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAELKGLDPARVSVPVIGGH 718
+NPV+ +T V+K G I LD R + E G++P V+G H
Sbjct: 137 TNPVDI---LTYVVWKISGFPVGRVIGSGCNLDSARFRYLIGEKLGVNPTSCHGWVLGEH 193
Query: 719 AGKTIIPL----------ISQCTPKV--DFPQDQLSTLTGRIQEAGTEVVKAKA----GA 850
G + +P+ + P + D ++ + ++ E G EV+ K
Sbjct: 194 -GDSSVPIWSGVNVAGVTLKSLNPAIGTDSDKEHWKNVHKQVVEGGYEVLNMKGYTSWAI 252
Query: 851 GSATLSMAYA---GARFVFSLVDAMNGKEGVVECSFVKSQETDCPYFSTPLLLGKKGI 1015
G + +A + + V + + G G+ E F+ S P +LG+ GI
Sbjct: 253 GLSVTDLARSILKNLKRVHPVTTLVKGFHGIKEEVFL----------SIPCVLGQSGI 300
>ref|NP_032518.1| L-lactate dehydrogenase B chain [Mus musculus].
Length = 334
Score = 53.1 bits (126), Expect = 6e-07
Identities = 44/188 (23%), Positives = 77/188 (40%), Gaps = 2/188 (1%)
Frame = +2
Query: 176 SAQNNAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTP--GVAADLSHIETRATV 349
+A N K+ V+G G +G ++ + L L L D+ G DL H
Sbjct: 17 AAVPNNKITVVGV-GQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQT 75
Query: 350 KGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMI 529
+ + +VV+ AGV ++ G +R +L N + + ++ PD I
Sbjct: 76 PKIVADKDY-SVTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCTI 134
Query: 530 CIISNPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAELKGLDPARVSVPVI 709
++SNPV+ +T +K G+ I LD R +AE G+ P+ ++
Sbjct: 135 IVVSNPVDI---LTYVTWKLSGLPKHRVIGSGCNLDSARFRYLMAEKLGIHPSSCHGWIL 191
Query: 710 GGHAGKTI 733
G H ++
Sbjct: 192 GEHGDSSV 199
>ref|XP_904967.1| PREDICTED: l-lactate dehydrogenase B chain-like isoform 7 [Mus
musculus].
Length = 334
Score = 50.4 bits (119), Expect = 4e-06
Identities = 43/188 (22%), Positives = 76/188 (40%), Gaps = 2/188 (1%)
Frame = +2
Query: 176 SAQNNAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTP--GVAADLSHIETRATV 349
+A N K+ V+G G +G ++ + L L L D+ DL H
Sbjct: 17 AAVPNNKITVVGV-GQVGMACAISILGKSLADELALVDVLEDKLKEEMMDLQHGSLFLQT 75
Query: 350 KGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMI 529
+ + +VV+ AGV ++ G +R +L N + + ++ PD I
Sbjct: 76 PKIVADKDY-SVTANSKIVVVSAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCTI 134
Query: 530 CIISNPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAELKGLDPARVSVPVI 709
++SNPV+ +T +K G+ I LD R +AE G+ P+ ++
Sbjct: 135 IVVSNPVDI---LTYVTWKLRGLPKHRVIGSGCNLDSARFRYLMAEKLGIHPSSCHGWIL 191
Query: 710 GGHAGKTI 733
G H ++
Sbjct: 192 GEHGDSSV 199
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 58,811,226
Number of extensions: 1614701
Number of successful extensions: 6010
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 5997
Number of HSP's successfully gapped: 4
Length of query: 573
Length of database: 15,617,559
Length adjustment: 107
Effective length of query: 466
Effective length of database: 12,403,707
Effective search space: 5780127462
Effective search space used: 5780127462
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002096
(1720 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003354540.1| PREDICTED: malate dehydrogenase, mitochondri... 639 0.0
Alignment gi|XP_003361319.1| PREDICTED: malate dehydrogenase, mitochondri... 587 e-168
Alignment gi|NP_001182704.1| L-lactate dehydrogenase C chain [Sus scrofa]. 59 1e-08
Alignment gi|XP_003353222.1| PREDICTED: l-lactate dehydrogenase A-like 6B... 55 2e-07
Alignment gi|XP_001926443.2| PREDICTED: l-lactate dehydrogenase A-like 6B... 55 2e-07
Alignment gi|NP_001106758.1| L-lactate dehydrogenase B chain [Sus scrofa]. 53 5e-07
Alignment gi|XP_003355600.1| PREDICTED: l-lactate dehydrogenase B chain-l... 53 5e-07
Alignment gi|XP_003361852.1| PREDICTED: l-lactate dehydrogenase A-like 6B... 50 3e-06
>ref|XP_003354540.1| PREDICTED: malate dehydrogenase, mitochondrial [Sus scrofa].
Length = 338
Score = 639 bits (1648), Expect = 0.0
Identities = 323/323 (100%), Positives = 323/323 (100%)
Frame = +2
Query: 164 SFSTSAQNNAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRA 343
SFSTSAQNNAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRA
Sbjct: 16 SFSTSAQNNAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRA 75
Query: 344 TVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDA 523
TVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDA
Sbjct: 76 TVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDA 135
Query: 524 MICIISNPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAELKGLDPARVSVP 703
MICIISNPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAELKGLDPARVSVP
Sbjct: 136 MICIISNPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAELKGLDPARVSVP 195
Query: 704 VIGGHAGKTIIPLISQCTPKVDFPQDQLSTLTGRIQEAGTEVVKAKAGAGSATLSMAYAG 883
VIGGHAGKTIIPLISQCTPKVDFPQDQLSTLTGRIQEAGTEVVKAKAGAGSATLSMAYAG
Sbjct: 196 VIGGHAGKTIIPLISQCTPKVDFPQDQLSTLTGRIQEAGTEVVKAKAGAGSATLSMAYAG 255
Query: 884 ARFVFSLVDAMNGKEGVVECSFVKSQETDCPYFSTPLLLGKKGIEKNLGIGKISPFEEKM 1063
ARFVFSLVDAMNGKEGVVECSFVKSQETDCPYFSTPLLLGKKGIEKNLGIGKISPFEEKM
Sbjct: 256 ARFVFSLVDAMNGKEGVVECSFVKSQETDCPYFSTPLLLGKKGIEKNLGIGKISPFEEKM 315
Query: 1064 IAEAIPELKASIKKGEEFVKNMK 1132
IAEAIPELKASIKKGEEFVKNMK
Sbjct: 316 IAEAIPELKASIKKGEEFVKNMK 338
>ref|XP_003361319.1| PREDICTED: malate dehydrogenase, mitochondrial-like [Sus scrofa].
Length = 418
Score = 587 bits (1513), Expect = e-168
Identities = 305/335 (91%), Positives = 306/335 (91%), Gaps = 12/335 (3%)
Frame = +2
Query: 164 SFSTSAQNNAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRA 343
+FSTSAQNNAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRA
Sbjct: 84 AFSTSAQNNAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRA 143
Query: 344 TVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDA 523
TVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDA
Sbjct: 144 TVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDA 203
Query: 524 MICIISNPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAELKGLDPARVSVP 703
MICIISNPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAELKGLDPARVSVP
Sbjct: 204 MICIISNPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAELKGLDPARVSVP 263
Query: 704 VIG-------GHAGKTIIPLIS-----QCTPKVDFPQDQLSTLTGRIQEAGTEVVKAKAG 847
VIG GH G P CTPKVDFPQDQLSTLTGRIQEAGTEVVKAKAG
Sbjct: 264 VIGVVKGPLDGHVGLWSGPAFQGSTPMGCTPKVDFPQDQLSTLTGRIQEAGTEVVKAKAG 323
Query: 848 AGSATLSMAYAGARFVFSLVDAMNGKEGVVECSFVKSQETDCPYFSTPLLLGKKGIEKNL 1027
AGSATLSMAYAGARFVFSLVDAMNGKEGVVEC DCPYFSTPLLLGKKGIEKNL
Sbjct: 324 AGSATLSMAYAGARFVFSLVDAMNGKEGVVECXXXXXXXXDCPYFSTPLLLGKKGIEKNL 383
Query: 1028 GIGKISPFEEKMIAEAIPELKASIKKGEEFVKNMK 1132
GIGKISPFEEKMIAEAIPELKASIKKGEEFVKNMK
Sbjct: 384 GIGKISPFEEKMIAEAIPELKASIKKGEEFVKNMK 418
>ref|NP_001182704.1| L-lactate dehydrogenase C chain [Sus scrofa].
Length = 332
Score = 58.5 bits (140), Expect = 1e-08
Identities = 68/302 (22%), Positives = 118/302 (39%), Gaps = 25/302 (8%)
Frame = +2
Query: 185 NNAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIA--HTPGVAADLSH----IETRAT 346
+ +K+ ++G +G +G ++ + L L L D+A G DL H T
Sbjct: 19 SQSKITIVG-TGAVGMACAICILLKDLADELALVDVAVDKLKGETMDLQHGSLFFNTSKI 77
Query: 347 VKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAM 526
V G + +V++ AG ++ G +R L N I+ ++ QH PD
Sbjct: 78 VSG-----KDYSVSANSKIVIVTAGARQQEGESRLALVQRNVNIMKSIIPTIVQHSPDCK 132
Query: 527 ICIISNPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAELKGLDPARVSVPV 706
+ I+SNPV+ +T +K G+ I LD R + + G+ P +
Sbjct: 133 MLIVSNPVDI---LTYVAWKLSGLPATRVIGSGCNLDSARFRYLIGKKLGVHPTSCHGWI 189
Query: 707 IGGHAGKTIIPL----------ISQCTPKV--DFPQDQLSTLTGRIQEAGTEVVKAKAGA 850
IG H G + +PL + PK+ D +DQ + ++ + E++K K
Sbjct: 190 IGEH-GDSSVPLWSGVNVAGVALKTLDPKLGTDSDKDQWKNIHKQVIGSAYEIIKLKGYT 248
Query: 851 GSA-------TLSMAYAGARFVFSLVDAMNGKEGVVECSFVKSQETDCPYFSTPLLLGKK 1009
A + R V + + G G+ E F+ S P +LG+
Sbjct: 249 SWAIGLSVTDLVGSILKNLRRVHPVSTMVKGLYGIKEEIFL----------SIPCVLGRN 298
Query: 1010 GI 1015
G+
Sbjct: 299 GV 300
>ref|XP_003353222.1| PREDICTED: l-lactate dehydrogenase A-like 6B-like [Sus scrofa].
Length = 381
Score = 54.7 bits (130), Expect = 2e-07
Identities = 78/343 (22%), Positives = 141/343 (41%), Gaps = 32/343 (9%)
Frame = +2
Query: 170 STSAQNNAKVAVLGA-SGGIGQPLSLLLKNSPLVSRLTLYDI--AHTPGVAADLSH---- 328
S ++ K++++G S G+ +S+LLK L L L D+ + G DL H
Sbjct: 63 SEEVVHSNKISIVGTGSVGMACAISILLKG--LTDELALVDVDESRLKGETMDLQHGSPF 120
Query: 329 --IETRATVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAAC 502
+ + K YL ++V+I AG ++ G TR +L N TI + ++
Sbjct: 121 VKMPNIVSSKDYL-------ITANSNLVIITAGARQEKGETRLNLVQRNVTIFKLMISSI 173
Query: 503 AQHCPDAMICIISNPVNSTIPITAEVFKKHGVYNPNKIFGV-TTLDIVRANAFVAELKGL 679
Q+ P + ++SNPV+ I V K + N+I G LD R + + G+
Sbjct: 174 VQYSPRCKLIVVSNPVD----ILTYVAWKLSEFPQNRIIGSGCNLDTARFRFLIGQRLGI 229
Query: 680 DPARVSVPVIGGHAGKTI----------IPLIS-QCTPKVDFPQDQLSTLTGRIQEAGTE 826
++G H ++ +PL + D +Q + + + E
Sbjct: 230 HSESCHGWILGEHGDSSVPVWSGVNIAGVPLKNLNLDIGTDKDPEQWKNVHKDVVASAYE 289
Query: 827 VVKAKAGAGSATLSMAYA--------GARFVFSLVDAMNGKEGVVECSFVKSQETDCPYF 982
++K K G S + ++ A R V + + G G+ E F+
Sbjct: 290 IIKMK-GYTSWAIGLSVADLTESILKNLRRVHPVSTRIKGLYGINEEVFL---------- 338
Query: 983 STPLLLGKKGIEKNLGIGKISPFEEKMI---AEAIPELKASIK 1102
S P +LG+ GI + + K++P EE + A+ + E++ +K
Sbjct: 339 SVPCILGESGITDLIKV-KLTPEEEAYLQKSAKTLWEIQKELK 380
>ref|XP_001926443.2| PREDICTED: l-lactate dehydrogenase A-like 6B-like [Sus scrofa].
Length = 381
Score = 54.7 bits (130), Expect = 2e-07
Identities = 78/343 (22%), Positives = 141/343 (41%), Gaps = 32/343 (9%)
Frame = +2
Query: 170 STSAQNNAKVAVLGA-SGGIGQPLSLLLKNSPLVSRLTLYDI--AHTPGVAADLSH---- 328
S ++ K++++G S G+ +S+LLK L L L D+ + G DL H
Sbjct: 63 SEEVVHSNKISIVGTGSVGMACAISILLKG--LTDELALVDVDESRLKGETMDLQHGSPF 120
Query: 329 --IETRATVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAAC 502
+ + K YL ++V+I AG ++ G TR +L N TI + ++
Sbjct: 121 VKMPNIVSSKDYL-------ITANSNLVIITAGARQEKGETRLNLVQRNVTIFKLMISSI 173
Query: 503 AQHCPDAMICIISNPVNSTIPITAEVFKKHGVYNPNKIFGV-TTLDIVRANAFVAELKGL 679
Q+ P + ++SNPV+ I V K + N+I G LD R + + G+
Sbjct: 174 VQYSPRCKLIVVSNPVD----ILTYVAWKLSEFPQNRIIGSGCNLDTARFRFLIGQRLGI 229
Query: 680 DPARVSVPVIGGHAGKTI----------IPLIS-QCTPKVDFPQDQLSTLTGRIQEAGTE 826
++G H ++ +PL + D +Q + + + E
Sbjct: 230 HSESCHGWILGEHGDSSVPVWSGVNIAGVPLKNLNLDIGTDKDPEQWKNVHKDVVASAYE 289
Query: 827 VVKAKAGAGSATLSMAYA--------GARFVFSLVDAMNGKEGVVECSFVKSQETDCPYF 982
++K K G S + ++ A R V + + G G+ E F+
Sbjct: 290 IIKMK-GYTSWAIGLSVADLTESILKNLRRVHPVSTRIKGLYGINEEVFL---------- 338
Query: 983 STPLLLGKKGIEKNLGIGKISPFEEKMI---AEAIPELKASIK 1102
S P +LG+ GI + + K++P EE + A+ + E++ +K
Sbjct: 339 SVPCILGESGITDLIKV-KLTPEEEAYLQKSAKTLWEIQKELK 380
>ref|NP_001106758.1| L-lactate dehydrogenase B chain [Sus scrofa].
Length = 334
Score = 53.1 bits (126), Expect = 5e-07
Identities = 43/184 (23%), Positives = 76/184 (41%), Gaps = 2/184 (1%)
Frame = +2
Query: 188 NAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTP--GVAADLSHIETRATVKGYL 361
N K+ V+G G +G ++ + L L L D+ G DL H +
Sbjct: 21 NNKITVVGV-GQVGMACAISILGKSLTDELALVDVLEDKLKGEMMDLQHGSLFLQTPKIV 79
Query: 362 GPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIIS 541
+ +VV+ AGV ++ G +R +L N + + ++ PD +I ++S
Sbjct: 80 ADKDY-SVTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVS 138
Query: 542 NPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAELKGLDPARVSVPVIGGHA 721
NPV+ +T +K G+ I LD R +AE G+ P+ ++G H
Sbjct: 139 NPVDI---LTYVTWKLSGLPKHRVIGSGCNLDSARFRYLMAEKLGVHPSSCHGWILGEHG 195
Query: 722 GKTI 733
++
Sbjct: 196 DSSV 199
>ref|XP_003355600.1| PREDICTED: l-lactate dehydrogenase B chain-like [Sus scrofa].
Length = 428
Score = 53.1 bits (126), Expect = 5e-07
Identities = 43/184 (23%), Positives = 76/184 (41%), Gaps = 2/184 (1%)
Frame = +2
Query: 188 NAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTP--GVAADLSHIETRATVKGYL 361
N K+ V+G G +G ++ + L L L D+ G DL H +
Sbjct: 114 NNKITVVGV-GQVGMACAISILGKSLTDELALVDVLEDKLKGEMMDLQHGSLFLQTPKIV 172
Query: 362 GPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIIS 541
+ +VV+ AGV ++ G +R +L N + + ++ PD +I ++S
Sbjct: 173 ADKDY-SVTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVS 231
Query: 542 NPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAELKGLDPARVSVPVIGGHA 721
NPV+ +T +K G+ I LD R +AE G+ P+ ++G H
Sbjct: 232 NPVDI---LTYVTWKLSGLPKHRVIGSGCNLDSARFRYLMAEKLGVHPSSCHGWILGEHG 288
Query: 722 GKTI 733
++
Sbjct: 289 DSSV 292
>ref|XP_003361852.1| PREDICTED: l-lactate dehydrogenase A-like 6B-like, partial [Sus
scrofa].
Length = 328
Score = 50.4 bits (119), Expect = 3e-06
Identities = 75/337 (22%), Positives = 135/337 (40%), Gaps = 31/337 (9%)
Frame = +2
Query: 170 STSAQNNAKVAVLGA-SGGIGQPLSLLLKNSPLVSRLTLYDIAHT----PGVAADLSH-- 328
S ++ K++++G S G+ +S+LLK L L L D+ + DL H
Sbjct: 14 SEEVVHSNKISIVGTGSVGMACAISILLKG--LTDELALVDVDESRLKGETXTMDLQHGS 71
Query: 329 ----IETRATVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTA 496
+ + K YL ++V+I AG ++ G TR +L N TI + +
Sbjct: 72 PFVKMPNIVSSKDYL-------ITANSNLVIITAGARQEKGETRLNLVQRNVTIFKLMIS 124
Query: 497 ACAQHCPDAMICIISNPVNSTIPITAEVFKKHGVYNPNKIFGV-TTLDIVRANAFVAELK 673
+ Q+ P + ++SNPV+ I V K + N+I G LD R + +
Sbjct: 125 SIVQYSPRCKLIVVSNPVD----ILTYVAWKLSEFPQNRIIGSGCNLDTARFRFLIGQRL 180
Query: 674 GLDPARVSVPVIGGHAGKTI----------IPLIS-QCTPKVDFPQDQLSTLTGRIQEAG 820
G+ ++G H ++ +PL + D +Q + + +
Sbjct: 181 GIHSESCHGWILGEHGDSSVPVWSGVNIAGVPLKNLNLDIGTDKDPEQWKNVHKDVVASA 240
Query: 821 TEVVKAKAGAGSATLSMAYA--------GARFVFSLVDAMNGKEGVVECSFVKSQETDCP 976
E++K K G S + ++ A R V + + G G+ E F+
Sbjct: 241 YEIIKMK-GYTSWAIGLSVADLTESILKNLRRVHPVSTRIKGLYGINEEVFL-------- 291
Query: 977 YFSTPLLLGKKGIEKNLGIGKISPFEEKMIAEAIPEL 1087
S P +LG+ GI + + K++P EE + ++ L
Sbjct: 292 --SVPCILGESGITDLIKV-KLTPEEEAYLQKSAKTL 325
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 43,852,690
Number of extensions: 1237342
Number of successful extensions: 4980
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 4974
Number of HSP's successfully gapped: 8
Length of query: 573
Length of database: 11,343,932
Length adjustment: 104
Effective length of query: 469
Effective length of database: 8,754,644
Effective search space: 4105928036
Effective search space used: 4105928036
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002096
(1720 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL894019.2| Sus scrofa unplaced genomic scaffold ChrUScaf1904 1191 0.0
Sscrofa_Chr03 1191 0.0
Sscrofa_Chr09 167 3e-38
Sscrofa_Chr05 90 5e-15
>gb|GL894019.2| Sus scrofa unplaced genomic scaffold ChrUScaf1904
Length = 181737
Score = 1191 bits (601), Expect = 0.0
Identities = 695/721 (96%), Gaps = 4/721 (0%)
Strand = Plus / Plus
Query: 1003 gaaaaagggcatcgagaagaatctaggcatcggcaaaatctccccttttgaagagaagat 1062
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137054 gaaaaagggcatcgagaagaatctaggcatcggcaaaatctccccttttgaagagaagat 137113
Query: 1063 gatcgccgaggccattcctgagctgaaagcctccatcaagaaaggagaggagtttgtcaa 1122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137114 gatcgccgaggccattcctgagctgaaagcctccatcaagaaaggagaggagtttgtcaa 137173
Query: 1123 gaacatgaaatgagcaggcggttggcgagcagtccgcttccttaacttattcgggcatca 1182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137174 gaacatgaaatgagcaggcggttggcgagcagtccgcttccttaacttattcgggcatca 137233
Query: 1183 tgtcactgtaaagccatttcagacccctctgtctcctccctttgctttggtgatgagtgt 1242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137234 tgtcactgtaaagccatttcagacccctctgtctcctccctttgctttggtgatgagtgt 137293
Query: 1243 cctgttcacaaagcaccccttccaaatctcggggcgtctctcggtgcatccgtaaagcag 1302
|||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 137294 cctgtttacaaagcaccccttccaaatctcggggcatctctcggtgcatccgtaaagcag 137353
Query: 1303 gctctggtcttgtttttgagagtctcctccggttgaatactcggctttcttccccaacag 1362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137354 gctctggtcttgtttttgagagtctcctccggttgaatactcggctttcttccccaacag 137413
Query: 1363 agctgactgcagagtgtccatcgtgaatcggaactagatgtgttttcaaaatagacggaa 1422
|||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct: 137414 agctgactgcagagtgtccatcgtgattcggaactagatgtgtttccaaaatagacggaa 137473
Query: 1423 gcatgatggtctgtcagtagcttcagatctcacatctttatcagtaactgcttctcccac 1482
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 137474 gcatgatggtctgtcagtagcttcagatctcacacctttatcagtaactgcttctcccac 137533
Query: 1483 cctgccctctgctccgtcaagtccctcgggtgtgtgggctgaaagaagggctggctgcat 1542
|||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct: 137534 cctgccctctgctccgtcgagtccctcgggtgtgtgggctgaaggaagggctggctgcat 137593
Query: 1543 ccaaaaggttggcagcccggtggccaacgccaggctgccgtcttatggtcccaagc-tgt 1601
|| | ||| ||||||||||||||||||||||||||||||||||||| || |||||| |||
Sbjct: 137594 ccgagagggtggcagcccggtggccaacgccaggctgccgtcttat-gttccaagcttgt 137652
Query: 1602 ttc-gtgggtgttttcgggcc-aacaaacagcacctttgcctggatttcgttgtctaatt 1659
||| ||| |||||||| |||| ||||||||||||| ||| ||||||||||||||||||||
Sbjct: 137653 ttctgtgtgtgttttctggccaaacaaacagcaccattggctggatttcgttgtctaatt 137712
Query: 1660 ctgatcaagccctgaaattcattggcagtgaacatccacagcccaaaatgggaagaaagc 1719
||||||||||||||||||||| ||||||||| |||||||||| || ||||| ||||||
Sbjct: 137713 ctgatcaagccctgaaattcagtggcagtgacaatccacagccagaagtgggaggaaagc 137772
Query: 1720 t 1720
|
Sbjct: 137773 t 137773
Score = 341 bits (172), Expect = 8e-91
Identities = 172/172 (100%)
Strand = Plus / Plus
Query: 183 agaacaatgccaaggtagccgtgctgggggcttccggaggaatcgggcagcccctttcgc 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128492 agaacaatgccaaggtagccgtgctgggggcttccggaggaatcgggcagcccctttcgc 128551
Query: 243 ttctcctgaaaaacagccccttggtgagccgcctgaccctctacgatatcgcgcacacac 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128552 ttctcctgaaaaacagccccttggtgagccgcctgaccctctacgatatcgcgcacacac 128611
Query: 303 ccggagtggccgcggatctgagccacatcgagaccagagcgactgtgaaagg 354
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128612 ccggagtggccgcggatctgagccacatcgagaccagagcgactgtgaaagg 128663
Score = 254 bits (128), Expect = 1e-64
Identities = 128/128 (100%)
Strand = Plus / Plus
Query: 547 ggttaactccaccatcccaatcacggcggaggtcttcaagaaacacggcgtgtacaaccc 606
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131738 ggttaactccaccatcccaatcacggcggaggtcttcaagaaacacggcgtgtacaaccc 131797
Query: 607 caataaaatcttcggggtgacgaccctggacattgtccgagccaacgcttttgttgcaga 666
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131798 caataaaatcttcggggtgacgaccctggacattgtccgagccaacgcttttgttgcaga 131857
Query: 667 gctgaagg 674
||||||||
Sbjct: 131858 gctgaagg 131865
Score = 228 bits (115), Expect = 8e-57
Identities = 115/115 (100%)
Strand = Plus / Plus
Query: 435 caggcatgacacgggatgacctgttcaacaccaacgccaccatcgtggccaccctgacgg 494
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130471 caggcatgacacgggatgacctgttcaacaccaacgccaccatcgtggccaccctgacgg 130530
Query: 495 ctgcctgcgcccagcactgccccgacgccatgatctgcatcatttccaacccggt 549
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130531 ctgcctgcgcccagcactgccccgacgccatgatctgcatcatttccaacccggt 130585
Score = 206 bits (104), Expect = 3e-50
Identities = 104/104 (100%)
Strand = Plus / Plus
Query: 749 cagtgcaccccgaaggtggactttccgcaggaccagctctccaccctcaccgggcgcatc 808
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135404 cagtgcaccccgaaggtggactttccgcaggaccagctctccaccctcaccgggcgcatc 135463
Query: 809 caggaggccggcaccgaggtggtcaaggctaaggccggagcagg 852
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135464 caggaggccggcaccgaggtggtcaaggctaaggccggagcagg 135507
Score = 172 bits (87), Expect = 4e-40
Identities = 87/87 (100%)
Strand = Plus / Plus
Query: 352 aggctacctcggacctgagcagctgccagactgcctgaagggctgcgatgtggtggttat 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129931 aggctacctcggacctgagcagctgccagactgcctgaagggctgcgatgtggtggttat 129990
Query: 412 tccagccggagtcccaagaaagccagg 438
|||||||||||||||||||||||||||
Sbjct: 129991 tccagccggagtcccaagaaagccagg 130017
Score = 172 bits (87), Expect = 4e-40
Identities = 93/95 (97%)
Strand = Plus / Plus
Query: 850 aggctctgccaccctgtccatggcatatgccggagcccggtttgtcttctccctcgtgga 909
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135819 aggctctgccaccctgtccatggcatatgccggagcccggtttgtcttctccctcgtgga 135878
Query: 910 tgcgatgaacgggaaggaaggtgttgtcgagtgtt 944
||| ||||||||||||||||| |||||||||||||
Sbjct: 135879 tgcaatgaacgggaaggaaggcgttgtcgagtgtt 135913
Score = 93.7 bits (47), Expect = 3e-16
Identities = 47/47 (100%)
Strand = Plus / Plus
Query: 672 agggtttggacccggctcgagtcagcgttcccgtcattggcggccac 718
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134229 agggtttggacccggctcgagtcagcgttcccgtcattggcggccac 134275
Score = 65.9 bits (33), Expect = 7e-08
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 967 ggactgtccgtatttctccacgccgttgctgctgggg 1003
|||||||||||||||||||||||| ||||||||||||
Sbjct: 136014 ggactgtccgtatttctccacgccattgctgctgggg 136050
>Sscrofa_Chr03
|| Length = 144787322
Score = 1191 bits (601), Expect = 0.0
Identities = 695/721 (96%), Gaps = 4/721 (0%)
Strand = Plus / Minus
Query: 1003 gaaaaagggcatcgagaagaatctaggcatcggcaaaatctccccttttgaagagaagat 1062
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9954418 gaaaaagggcatcgagaagaatctaggcatcggcaaaatctccccttttgaagagaagat 9954359
Query: 1063 gatcgccgaggccattcctgagctgaaagcctccatcaagaaaggagaggagtttgtcaa 1122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9954358 gatcgccgaggccattcctgagctgaaagcctccatcaagaaaggagaggagtttgtcaa 9954299
Query: 1123 gaacatgaaatgagcaggcggttggcgagcagtccgcttccttaacttattcgggcatca 1182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9954298 gaacatgaaatgagcaggcggttggcgagcagtccgcttccttaacttattcgggcatca 9954239
Query: 1183 tgtcactgtaaagccatttcagacccctctgtctcctccctttgctttggtgatgagtgt 1242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9954238 tgtcactgtaaagccatttcagacccctctgtctcctccctttgctttggtgatgagtgt 9954179
Query: 1243 cctgttcacaaagcaccccttccaaatctcggggcgtctctcggtgcatccgtaaagcag 1302
|||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 9954178 cctgtttacaaagcaccccttccaaatctcggggcatctctcggtgcatccgtaaagcag 9954119
Query: 1303 gctctggtcttgtttttgagagtctcctccggttgaatactcggctttcttccccaacag 1362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9954118 gctctggtcttgtttttgagagtctcctccggttgaatactcggctttcttccccaacag 9954059
Query: 1363 agctgactgcagagtgtccatcgtgaatcggaactagatgtgttttcaaaatagacggaa 1422
|||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct: 9954058 agctgactgcagagtgtccatcgtgattcggaactagatgtgtttccaaaatagacggaa 9953999
Query: 1423 gcatgatggtctgtcagtagcttcagatctcacatctttatcagtaactgcttctcccac 1482
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 9953998 gcatgatggtctgtcagtagcttcagatctcacacctttatcagtaactgcttctcccac 9953939
Query: 1483 cctgccctctgctccgtcaagtccctcgggtgtgtgggctgaaagaagggctggctgcat 1542
|||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct: 9953938 cctgccctctgctccgtcgagtccctcgggtgtgtgggctgaaggaagggctggctgcat 9953879
Query: 1543 ccaaaaggttggcagcccggtggccaacgccaggctgccgtcttatggtcccaagc-tgt 1601
|| | ||| ||||||||||||||||||||||||||||||||||||| || |||||| |||
Sbjct: 9953878 ccgagagggtggcagcccggtggccaacgccaggctgccgtcttat-gttccaagcttgt 9953820
Query: 1602 ttc-gtgggtgttttcgggcc-aacaaacagcacctttgcctggatttcgttgtctaatt 1659
||| ||| |||||||| |||| ||||||||||||| ||| ||||||||||||||||||||
Sbjct: 9953819 ttctgtgtgtgttttctggccaaacaaacagcaccattggctggatttcgttgtctaatt 9953760
Query: 1660 ctgatcaagccctgaaattcattggcagtgaacatccacagcccaaaatgggaagaaagc 1719
||||||||||||||||||||| ||||||||| |||||||||| || ||||| ||||||
Sbjct: 9953759 ctgatcaagccctgaaattcagtggcagtgacaatccacagccagaagtgggaggaaagc 9953700
Query: 1720 t 1720
|
Sbjct: 9953699 t 9953699
Score = 341 bits (172), Expect = 8e-91
Identities = 172/172 (100%)
Strand = Plus / Minus
Query: 183 agaacaatgccaaggtagccgtgctgggggcttccggaggaatcgggcagcccctttcgc 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9962198 agaacaatgccaaggtagccgtgctgggggcttccggaggaatcgggcagcccctttcgc 9962139
Query: 243 ttctcctgaaaaacagccccttggtgagccgcctgaccctctacgatatcgcgcacacac 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9962138 ttctcctgaaaaacagccccttggtgagccgcctgaccctctacgatatcgcgcacacac 9962079
Query: 303 ccggagtggccgcggatctgagccacatcgagaccagagcgactgtgaaagg 354
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9962078 ccggagtggccgcggatctgagccacatcgagaccagagcgactgtgaaagg 9962027
Score = 341 bits (172), Expect = 8e-91
Identities = 181/184 (98%)
Strand = Plus / Minus
Query: 1 gtctcgcgagacctggcggagcggagccgggaggacccgtgcagtgtggaggtcgttgga 60
|||||||||||||||||||||||||||||||||| || ||| ||||||||||||||||||
Sbjct: 9965931 gtctcgcgagacctggcggagcggagccgggagggcctgtggagtgtggaggtcgttgga 9965872
Query: 61 gtcactttcttgctgccagctcgtttgccggccggtcctctccccgcacgccccagccat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9965871 gtcactttcttgctgccagctcgtttgccggccggtcctctccccgcacgccccagccat 9965812
Query: 121 gctctccgccctcgcccggcctgccggcgccgctctccgccgcagcttcagcacctcggc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9965811 gctctccgccctcgcccggcctgccggcgccgctctccgccgcagcttcagcacctcggc 9965752
Query: 181 ccag 184
||||
Sbjct: 9965751 ccag 9965748
Score = 281 bits (142), Expect = 6e-73
Identities = 151/154 (98%)
Strand = Plus / Minus
Query: 850 aggctctgccaccctgtccatggcatatgccggagcccggtttgtcttctccctcgtgga 909
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9955311 aggctctgccaccctgtccatggcatatgccggagcccggtttgtcttctccctcgtgga 9955252
Query: 910 tgcgatgaacgggaaggaaggtgttgtcgagtgttcctttgtcaagtcccaggaaacgga 969
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 9955251 tgcaatgaacgggaaggaaggcgttgtcgagtgttcctttgtcaagtcccaggaaacgga 9955192
Query: 970 ctgtccgtatttctccacgccgttgctgctgggg 1003
||||||||||||||||||||| ||||||||||||
Sbjct: 9955191 ctgtccgtatttctccacgccattgctgctgggg 9955158
Score = 254 bits (128), Expect = 1e-64
Identities = 128/128 (100%)
Strand = Plus / Minus
Query: 547 ggttaactccaccatcccaatcacggcggaggtcttcaagaaacacggcgtgtacaaccc 606
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9958941 ggttaactccaccatcccaatcacggcggaggtcttcaagaaacacggcgtgtacaaccc 9958882
Query: 607 caataaaatcttcggggtgacgaccctggacattgtccgagccaacgcttttgttgcaga 666
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9958881 caataaaatcttcggggtgacgaccctggacattgtccgagccaacgcttttgttgcaga 9958822
Query: 667 gctgaagg 674
||||||||
Sbjct: 9958821 gctgaagg 9958814
Score = 228 bits (115), Expect = 8e-57
Identities = 115/115 (100%)
Strand = Plus / Minus
Query: 435 caggcatgacacgggatgacctgttcaacaccaacgccaccatcgtggccaccctgacgg 494
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9960130 caggcatgacacgggatgacctgttcaacaccaacgccaccatcgtggccaccctgacgg 9960071
Query: 495 ctgcctgcgcccagcactgccccgacgccatgatctgcatcatttccaacccggt 549
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9960070 ctgcctgcgcccagcactgccccgacgccatgatctgcatcatttccaacccggt 9960016
Score = 206 bits (104), Expect = 3e-50
Identities = 104/104 (100%)
Strand = Plus / Minus
Query: 749 cagtgcaccccgaaggtggactttccgcaggaccagctctccaccctcaccgggcgcatc 808
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9955682 cagtgcaccccgaaggtggactttccgcaggaccagctctccaccctcaccgggcgcatc 9955623
Query: 809 caggaggccggcaccgaggtggtcaaggctaaggccggagcagg 852
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9955622 caggaggccggcaccgaggtggtcaaggctaaggccggagcagg 9955579
Score = 172 bits (87), Expect = 4e-40
Identities = 87/87 (100%)
Strand = Plus / Minus
Query: 352 aggctacctcggacctgagcagctgccagactgcctgaagggctgcgatgtggtggttat 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9960674 aggctacctcggacctgagcagctgccagactgcctgaagggctgcgatgtggtggttat 9960615
Query: 412 tccagccggagtcccaagaaagccagg 438
|||||||||||||||||||||||||||
Sbjct: 9960614 tccagccggagtcccaagaaagccagg 9960588
Score = 159 bits (80), Expect = 6e-36
Identities = 80/80 (100%)
Strand = Plus / Minus
Query: 672 agggtttggacccggctcgagtcagcgttcccgtcattggcggccacgccgggaagacca 731
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9956740 agggtttggacccggctcgagtcagcgttcccgtcattggcggccacgccgggaagacca 9956681
Query: 732 tcatcccgctcatctctcag 751
||||||||||||||||||||
Sbjct: 9956680 tcatcccgctcatctctcag 9956661
>Sscrofa_Chr09
|| Length = 153670197
Score = 167 bits (84), Expect = 3e-38
Identities = 117/128 (91%)
Strand = Plus / Minus
Query: 9 agacctggcggagcggagccgggaggacccgtgcagtgtggaggtcgttggagtcacttt 68
||||||||||||| |||||||||||| || |||||| |||||||||||||||||||||||
Sbjct: 144783373 agacctggcggaggggagccgggagggcctgtgcagggtggaggtcgttggagtcacttt 144783314
Query: 69 cttgctgccagctcgtttgccggccggtcctctccccgcacgccccagccatgctctccg 128
| ||||||||| | |||||||||||||| |||||||||| ||||||||||||||||||
Sbjct: 144783313 cctgctgccagggcctttgccggccggtctgctccccgcacaccccagccatgctctccg 144783254
Query: 129 ccctcgcc 136
||||||||
Sbjct: 144783253 ccctcgcc 144783246
>Sscrofa_Chr05
|| Length = 111506441
Score = 89.7 bits (45), Expect = 5e-15
Identities = 84/97 (86%)
Strand = Plus / Plus
Query: 1034 ggcaaaatctccccttttgaagagaagatgatcgccgaggccattcctgagctgaaagcc 1093
|||||||||| | ||||||||||||||||||| || ||| ||||||||| ||||||||
Sbjct: 54122569 ggcaaaatcttctcttttgaagagaagatgataaccaaggtcattcctgacctgaaagct 54122628
Query: 1094 tccatcaagaaaggagaggagtttgtcaagaacatga 1130
|| ||||||||||||| ||||||| ||||||||||
Sbjct: 54122629 tcagtcaagaaaggagaaaagtttgtaaagaacatga 54122665
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 42,819,323
Number of extensions: 273
Number of successful extensions: 273
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 271
Number of HSP's successfully gapped: 20
Length of query: 1720
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1698
Effective length of database: 2,808,408,574
Effective search space: 4768677758652
Effective search space used: 4768677758652
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)