Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002120
(979 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001116504.1| corticosteroid 11-beta-dehydrogenase isozyme... 398 e-111
Alignment gi|NP_996852.1| hydroxysteroid 11-beta-dehydrogenase 1-like pro... 196 3e-50
Alignment gi|NP_001039627.1| dehydrogenase/reductase SDR family member 7 ... 91 2e-18
Alignment gi|NP_777247.1| dehydrogenase/reductase SDR family member 4 [Bo... 85 8e-17
Alignment gi|NP_001039751.1| estradiol 17-beta-dehydrogenase 11 [Bos taur... 84 2e-16
Alignment gi|NP_001030420.1| dehydrogenase/reductase SDR family member 7B... 82 9e-16
Alignment gi|XP_002702202.1| PREDICTED: dehydrogenase/reductase SDR famil... 82 9e-16
Alignment gi|NP_001039384.1| 3-ketodihydrosphingosine reductase precursor... 80 2e-15
Alignment gi|NP_001040081.1| 17-beta-hydroxysteroid dehydrogenase 13 [Bos... 76 5e-14
Alignment gi|NP_001192862.1| epidermal retinol dehydrogenase 2 [Bos tauru... 70 2e-12
>ref|NP_001116504.1| corticosteroid 11-beta-dehydrogenase isozyme 1 [Bos taurus].
Length = 292
Score = 398 bits (1023), Expect = e-111
Identities = 211/278 (75%), Positives = 234/278 (84%)
Frame = +2
Query: 140 MAFMKKYLLPILGIFLAYYYYSANEEFRPEMLRGKKVIVTGASKGIGREMAYHLARMGAH 319
MAFMKKYLLPILGIFLAYYYYSANEEFRPEMLRGK+VIVTGASKGIGREMAYHLARMGAH
Sbjct: 1 MAFMKKYLLPILGIFLAYYYYSANEEFRPEMLRGKRVIVTGASKGIGREMAYHLARMGAH 60
Query: 320 VVVTARSEETLKKVVSHCLELGASSAHYVAGTMEDMTFAEQFVAKAGKLLGGLDMLILNH 499
VVVTARSEE+LKKVVS CLELGA+SAHYVAGTME+MTFAEQFVAKAG+L+GGLDMLILNH
Sbjct: 61 VVVTARSEESLKKVVSRCLELGAASAHYVAGTMENMTFAEQFVAKAGELVGGLDMLILNH 120
Query: 500 ITHASMTPFSDDIHLVRRSMEVNFLSYVVLSVAALPMLKQSNGSIVVVSSQAGKMANPLV 679
I + + FS+DIHL+RR++EVN LSYVVLS AALPMLKQ+NGSIVVVSS AGK+A PLV
Sbjct: 121 IHYTPLGVFSNDIHLLRRTLEVNLLSYVVLSTAALPMLKQTNGSIVVVSSIAGKIACPLV 180
Query: 680 APYSASKFALDGFFSSIRKEYSVTKVNVSITLCILGLIDTDTAMTAVAGNTHVQPSPKEN 859
A YSASKFALDGFFSS+R EY TKVNVSITLCILGLIDTDTAM AVAG + + SPKE
Sbjct: 181 AAYSASKFALDGFFSSLRMEYEATKVNVSITLCILGLIDTDTAMKAVAGIFNAKASPKEE 240
Query: 860 VPWKLSKGQLCAKRKCIMTAQS*LLSCWEIQGRKILEF 973
++ KG + + + GRKI+EF
Sbjct: 241 CALEIIKGGTLRQDEVYYDSSILTPLLLRNPGRKIMEF 278
>ref|NP_996852.1| hydroxysteroid 11-beta-dehydrogenase 1-like protein precursor [Bos
taurus].
Length = 287
Score = 196 bits (497), Expect = 3e-50
Identities = 110/235 (46%), Positives = 149/235 (63%), Gaps = 1/235 (0%)
Frame = +2
Query: 149 MKKYLLPILG-IFLAYYYYSANEEFRPEMLRGKKVIVTGASKGIGREMAYHLARMGAHVV 325
MK LL LG +F AYY+ ++ F P L G +V++TG S GIG E+AYH AR+G+H+V
Sbjct: 1 MKVLLLTGLGALFFAYYW---DDNFDPASLHGARVLLTGVSAGIGEELAYHYARLGSHLV 57
Query: 326 VTARSEETLKKVVSHCLELGASSAHYVAGTMEDMTFAEQFVAKAGKLLGGLDMLILNHIT 505
+TA +E L++VV +C +LGA Y+A M E+ V A LGGLD L+LNH+
Sbjct: 58 LTAHTEALLQQVVGNCRKLGAPKVFYIAADMASPEVPERVVQFALDKLGGLDYLVLNHLG 117
Query: 506 HASMTPFSDDIHLVRRSMEVNFLSYVVLSVAALPMLKQSNGSIVVVSSQAGKMANPLVAP 685
A R M++NFLSYV L+ +ALP L S GS+VVVSS G++ +P
Sbjct: 118 AAPAGTRVRSSQSTRWLMQMNFLSYVQLTSSALPSLTDSKGSLVVVSSLLGRVPTSFSSP 177
Query: 686 YSASKFALDGFFSSIRKEYSVTKVNVSITLCILGLIDTDTAMTAVAGNTHVQPSP 850
YSA+KFALD FFSS+R+E V +VNV+IT+C+LGL D +A V G T V+ +P
Sbjct: 178 YSAAKFALDSFFSSLRRELDVQEVNVAITMCVLGLRDRASAAEGVRGITRVRAAP 232
>ref|NP_001039627.1| dehydrogenase/reductase SDR family member 7 [Bos taurus].
Length = 339
Score = 90.5 bits (223), Expect = 2e-18
Identities = 67/205 (32%), Positives = 107/205 (52%), Gaps = 5/205 (2%)
Frame = +2
Query: 221 RPEM-LRGKKVIVTGASKGIGREMAYHLARMGAHVVVTARSEETLKKVVSHCLELGASSA 397
RPE L V VTGAS GIG E+AY L+++G +V++AR L++V CLE G
Sbjct: 43 RPEWELTDMVVWVTGASSGIGEELAYQLSKLGVSLVLSARRMHELERVKRKCLENGNLKE 102
Query: 398 HYVAGTMEDMT--FAEQFVAKAG-KLLGGLDMLILNHITHASMTPFSDDIHLVRRSMEVN 568
+ D+T + + KA + G +D+L+ N + + + +E+N
Sbjct: 103 KDILILPLDLTDRSSHEMATKAVLQEFGRIDILVNNGGVSQRALCVDTSLDVFKELIELN 162
Query: 569 FLSYVVLSVAALP-MLKQSNGSIVVVSSQAGKMANPLVAPYSASKFALDGFFSSIRKEYS 745
+L V L+ LP M+++ G IV V+S G +A PL Y ASK AL GFF+++R E +
Sbjct: 163 YLGTVSLTKCVLPHMIERKQGKIVTVNSMVGIIAAPLSTGYCASKHALRGFFNTLRSELA 222
Query: 746 VTKVNVSITLCILGLIDTDTAMTAV 820
T ++I+ G + ++ A+
Sbjct: 223 -TYPGITISNICPGPVQSNIVKNAL 246
>ref|NP_777247.1| dehydrogenase/reductase SDR family member 4 [Bos taurus].
Length = 260
Score = 85.1 bits (209), Expect = 8e-17
Identities = 70/201 (34%), Positives = 106/201 (52%), Gaps = 8/201 (3%)
Frame = +2
Query: 221 RPEMLRGKKVIVTGASKGIGREMAYHLARMGAHVVVTARSEETLKKVVSHCLELGASSAH 400
R L K +VT ++ GIG +A LA+ GAHVVV++R ++ + + V+ G S
Sbjct: 8 RRNPLDNKVALVTASTDGIGFAIARRLAQDGAHVVVSSRKQQNVDRAVATLKGEGLSVTG 67
Query: 401 YV--AGTMEDMTFAEQFVAKAGKLLGGLDMLILNHITHASMTPFSDDI-----HLVRRSM 559
V G ED E+ VA A KL GG+D+LI N A+++PF + + + +
Sbjct: 68 TVCHVGKAED---RERLVATAVKLHGGVDILISN----AAVSPFFGSLMDVPEEVWDKIL 120
Query: 560 EVNFLSYVVLSVAALP-MLKQSNGSIVVVSSQAGKMANPLVAPYSASKFALDGFFSSIRK 736
+VN + +L+ A +P M K+ GSIV+VSS A P + PY+ SK AL G ++
Sbjct: 121 DVNVKATALLTKAVVPEMAKRGGGSIVIVSSIAAYSPFPSLGPYNVSKTALLGLTKNLAL 180
Query: 737 EYSVTKVNVSITLCILGLIDT 799
E + + NV + GLI T
Sbjct: 181 E--LAESNVRVNCLAPGLIRT 199
>ref|NP_001039751.1| estradiol 17-beta-dehydrogenase 11 [Bos taurus].
Length = 316
Score = 84.0 bits (206), Expect = 2e-16
Identities = 60/211 (28%), Positives = 105/211 (49%), Gaps = 4/211 (1%)
Frame = +2
Query: 161 LLPILGIFLAYYYYSANEEFRPEMLRGKKVIVTGASKGIGREMAYHLARMGAHVVVTARS 340
LLP L + + + + + G+ V++TGA GIGR+ AY A++ +V+ +
Sbjct: 26 LLPFLLVCIVESLLKLFIPKKRKSVTGEIVLITGAGHGIGRQTAYEFAKLKCKLVLWDIN 85
Query: 341 EETLKKVVSHCLELGASSAHYVAGTMEDMTFAEQFVAKAGKL---LGGLDMLILNHITHA 511
+ L++ + C LGA + +V D + E + A K+ +G + +L+ N
Sbjct: 86 KHGLEETATECKRLGAKAHTFVV----DCSNREDIYSSAKKVKAEVGDVSILVNNAGVVY 141
Query: 512 SMTPFSDDIHLVRRSMEVNFLSYVVLSVAALP-MLKQSNGSIVVVSSQAGKMANPLVAPY 688
+ F+ + ++ EVN L++ + A LP M+K ++G IV V+S AG P + Y
Sbjct: 142 TSDLFATQDPQIEKTFEVNILAHFWTTKAFLPEMMKNNHGHIVTVASAAGHTGVPFLLAY 201
Query: 689 SASKFALDGFFSSIRKEYSVTKVNVSITLCI 781
+SKFA GF ++ +E S K T C+
Sbjct: 202 CSSKFAAVGFHKALTEELSALKRTGVKTTCL 232
>ref|NP_001030420.1| dehydrogenase/reductase SDR family member 7B [Bos taurus].
Length = 325
Score = 81.6 bits (200), Expect = 9e-16
Identities = 65/210 (30%), Positives = 106/210 (50%), Gaps = 11/210 (5%)
Frame = +2
Query: 233 LRGKKVIVTGASKGIGREMAYHLARMGAHVVVTARSEETLKKVVSHCLELGASSA----- 397
+R V++TGA+ G+GRE A GA +V+ R+ E L+++ EL AS A
Sbjct: 50 VRNAVVVITGATSGLGRECARVFHAAGARLVLCGRNAEALEELSQ---ELAASRAPGVQT 106
Query: 398 HYVAGTMEDMTFAEQFVAKAGKLL---GGLDMLILNH--ITHASMTPFSDDIHLVRRSME 562
H D+ A ++L G +D+LI N ++ S D+ +R ME
Sbjct: 107 HKPCTVTFDLADPGAIAGAASEILQCFGHVDVLINNAGISYRGAIVDTSPDVD--KRVME 164
Query: 563 VNFLSYVVLSVAALP-MLKQSNGSIVVVSSQAGKMANPLVAPYSASKFALDGFFSSIRKE 739
N+ V L+ A LP M+++ G +V +SS GK++ P + Y+ASK A FF +R E
Sbjct: 165 TNYFGPVALTKALLPAMIRRRQGHVVAISSIQGKISLPFRSAYAASKHATQAFFDCLRAE 224
Query: 740 YSVTKVNVSITLCILGLIDTDTAMTAVAGN 829
V + ++ +T+ G I T+ ++ AV +
Sbjct: 225 --VEQHDIEVTVISPGYIHTNLSLNAVTAD 252
>ref|XP_002702202.1| PREDICTED: dehydrogenase/reductase SDR family member 7B-like [Bos
taurus].
Length = 325
Score = 81.6 bits (200), Expect = 9e-16
Identities = 65/210 (30%), Positives = 106/210 (50%), Gaps = 11/210 (5%)
Frame = +2
Query: 233 LRGKKVIVTGASKGIGREMAYHLARMGAHVVVTARSEETLKKVVSHCLELGASSA----- 397
+R V++TGA+ G+GRE A GA +V+ R+ E L+++ EL AS A
Sbjct: 50 VRNAVVVITGATSGLGRECARVFHAAGARLVLCGRNAEALEELSQ---ELAASRAPEVQT 106
Query: 398 HYVAGTMEDMTFAEQFVAKAGKLL---GGLDMLILNH--ITHASMTPFSDDIHLVRRSME 562
H D+ A ++L G +D+LI N ++ S D+ +R ME
Sbjct: 107 HKPCTVTFDLADPGAIAGAASEILQCFGHVDVLINNAGISYRGAIVDTSPDVD--KRVME 164
Query: 563 VNFLSYVVLSVAALP-MLKQSNGSIVVVSSQAGKMANPLVAPYSASKFALDGFFSSIRKE 739
N+ V L+ A LP M+++ G +V +SS GK++ P + Y+ASK A FF +R E
Sbjct: 165 TNYFGPVALTKALLPAMIRRRQGHVVAISSIQGKISLPFRSAYAASKHATQAFFDCLRAE 224
Query: 740 YSVTKVNVSITLCILGLIDTDTAMTAVAGN 829
V + ++ +T+ G I T+ ++ AV +
Sbjct: 225 --VEQHDIEVTVISPGYIHTNLSLNAVTAD 252
>ref|NP_001039384.1| 3-ketodihydrosphingosine reductase precursor [Bos taurus].
Length = 331
Score = 80.5 bits (197), Expect = 2e-15
Identities = 67/218 (30%), Positives = 105/218 (48%), Gaps = 6/218 (2%)
Frame = +2
Query: 170 ILGIFLAYYYYSANEEFRPEMLRGKKVIVTGASKGIGREMAYHLARMGAHVVVTARSEET 349
++ L Y S +P L G V+VTG S GIG+ +A + GA + + AR+E+
Sbjct: 9 LVAFVLLLYMVSPLISPKPLALPGAHVVVTGGSSGIGKCIAIECYKQGAFITLVARNEDK 68
Query: 350 L----KKVVSHCLELGASSAHYVAGTMEDMTFAEQFVAKAGKLLGGLDMLILNHITHASM 517
L K++ H + +D + E + +A + LG +DML+ N +
Sbjct: 69 LLQAKKEIEKHSINDKQVVLCISVDVSQDYSQVENVIKQAQEKLGPVDMLV-NCAGMSLS 127
Query: 518 TPFSD-DIHLVRRSMEVNFLSYVVLSVAALPMLKQSN-GSIVVVSSQAGKMANPLVAPYS 691
F D ++ R M +N+L V S A + +K+ G +V VSSQAG++ YS
Sbjct: 128 GKFEDLEVSTFERLMSINYLGSVYPSRAVIATMKERRMGRVVFVSSQAGQLGLFGYTAYS 187
Query: 692 ASKFALDGFFSSIRKEYSVTKVNVSITLCILGLIDTDT 805
+SKFAL G +++ E V NV +T+ DTDT
Sbjct: 188 SSKFALRGLAEALQME--VKPYNVYVTVAYPP--DTDT 221
>ref|NP_001040081.1| 17-beta-hydroxysteroid dehydrogenase 13 [Bos taurus].
Length = 300
Score = 75.9 bits (185), Expect = 5e-14
Identities = 57/200 (28%), Positives = 104/200 (52%), Gaps = 7/200 (3%)
Frame = +2
Query: 161 LLPILGIFLAYYYYSANEEFRP---EMLRGKKVIVTGASKGIGREMAYHLARMGAHVVVT 331
LL +L I + Y S + F P + + G+ V++TGA GIGR+ AY A+ + +V+
Sbjct: 7 LLLLLLIIIYSYLESLVKVFIPRRRKSVAGEIVLITGAGHGIGRQTAYEFAKRKSRLVLW 66
Query: 332 ARSEETLKKVVSHCLELGASSAHYVAGTMEDMTFAEQF---VAKAGKLLGGLDMLILNHI 502
++ +++ + C +LGA++ +V D + E+ V + K +G + +++ N
Sbjct: 67 DINKHGVEETAAECRKLGATTHVFVV----DCSNREEIYSSVNQVKKEVGDVTIVVNNAG 122
Query: 503 THASMTPFSDDIHLVRRSMEVNFLSYVVLSVAALP-MLKQSNGSIVVVSSQAGKMANPLV 679
S + ++ EVN L + ++ A LP M+++++G IV V+S G P +
Sbjct: 123 AIYPADLLSTKDEEITKTFEVNILGHFWITKALLPSMIRRNHGHIVTVASVCGHGVIPYL 182
Query: 680 APYSASKFALDGFFSSIRKE 739
PY +SKFA GF ++ E
Sbjct: 183 IPYCSSKFAAVGFHRALTSE 202
>ref|NP_001192862.1| epidermal retinol dehydrogenase 2 [Bos taurus].
Length = 309
Score = 70.5 bits (171), Expect = 2e-12
Identities = 55/175 (31%), Positives = 90/175 (51%), Gaps = 3/175 (1%)
Frame = +2
Query: 239 GKKVIVTGASKGIGREMAYHLARMGAHVVVTARSEETLKKVVSHCLELGASSAHYVAGTM 418
G+ V++TGA G+GR +A A++G+ +V+ S+E+ ++ +E GA+ +
Sbjct: 40 GEIVLITGAGSGLGRLLALKFAQLGSVLVLWDISQESNEETCKMAVEAGATRVYAYTCDC 99
Query: 419 EDMTFAEQFVAKAGKLLGGLDMLILNH--ITHASMTPFSDDIHLVRRSMEVNFLSYVVLS 592
+ + K +G +LI N +T D+ L+ +S++VNF S++
Sbjct: 100 SRKEEIYRVANQVKKEVGDASILINNAGIVTGRKFMDCPDE--LIEKSLDVNFKSHIWTY 157
Query: 593 VAALP-MLKQSNGSIVVVSSQAGKMANPLVAPYSASKFALDGFFSSIRKEYSVTK 754
A LP M+ + G +V +SS AG + +A Y ASKFA GF SI E S TK
Sbjct: 158 KAFLPAMIANNRGHLVCISSSAGLIGMNGLADYCASKFAAYGFAESIFLE-SFTK 211
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 36,310,705
Number of extensions: 1030067
Number of successful extensions: 3401
Number of sequences better than 1.0e-05: 36
Number of HSP's gapped: 3362
Number of HSP's successfully gapped: 36
Length of query: 326
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 224
Effective length of database: 14,306,398
Effective search space: 3204633152
Effective search space used: 3204633152
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002120
(979 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001005756.1| corticosteroid 11-beta-dehydrogenase isozyme... 404 e-113
Alignment gi|XP_542145.2| PREDICTED: similar to short-chain dehydrogenase... 188 8e-48
Alignment gi|XP_868441.1| PREDICTED: similar to short-chain dehydrogenase... 110 2e-24
Alignment gi|XP_537465.2| PREDICTED: similar to Dehydrogenase/reductase S... 91 2e-18
Alignment gi|NP_001041699.1| dehydrogenase/reductase SDR family member 4 ... 82 6e-16
Alignment gi|XP_536670.2| PREDICTED: similar to CG7601-PA [Canis familiar... 82 8e-16
Alignment gi|XP_535646.2| PREDICTED: similar to alcohol dehydrogenase PAN... 79 9e-15
Alignment gi|XP_850000.1| PREDICTED: similar to hydroxysteroid (17-beta) ... 79 9e-15
Alignment gi|XP_544970.2| PREDICTED: similar to dehydrogenase/reductase (... 77 2e-14
Alignment gi|XP_852048.1| PREDICTED: similar to follicular lymphoma varia... 75 9e-14
>ref|NP_001005756.1| corticosteroid 11-beta-dehydrogenase isozyme 1 [Canis lupus
familiaris].
Length = 293
Score = 404 bits (1038), Expect = e-113
Identities = 216/281 (76%), Positives = 237/281 (84%), Gaps = 1/281 (0%)
Frame = +2
Query: 140 MAFMKKYLLPILGIFLAYYYYSANEEFRPEMLRGKKVIVTGASKGIGREMAYHLARMGAH 319
MAF KKYL P+LG FLAYYYYSANEEFRPEML+GKKVIVTGASKGIG +MAYHLA+MGAH
Sbjct: 1 MAFKKKYLPPLLGFFLAYYYYSANEEFRPEMLQGKKVIVTGASKGIGEQMAYHLAKMGAH 60
Query: 320 VVVTARSEETLKKVVSHCLELGASSAHYVAGTMEDMTFAEQFVAKAGKLLGGLDMLILNH 499
VVVTARS+ETLKKVVSHCLELGA+SAHY+ GTMEDMTFAEQFVAKAGKL+GGLDMLILNH
Sbjct: 61 VVVTARSKETLKKVVSHCLELGAASAHYIPGTMEDMTFAEQFVAKAGKLMGGLDMLILNH 120
Query: 500 ITHASMTPFSDDIHLVRRSMEVNFLSYVVLSVAALPMLKQSNGSIVVVSSQAGKMANPLV 679
IT+ SM FS DIHLVRRSMEVNFLSYVVLS AALPMLKQSNGSIVVVSS+AGKM++PLV
Sbjct: 121 ITNTSMNLFSGDIHLVRRSMEVNFLSYVVLSAAALPMLKQSNGSIVVVSSKAGKMSSPLV 180
Query: 680 APYSASKFALDGFFSSIRKEYSVTKVNVSITLCILGLIDTDTAMTAVAG-NTHVQPSPKE 856
APYSASKFALDGFFSS+R E+SVTKVNVSITLCILGLI+TDTAM AV+G + V S KE
Sbjct: 181 APYSASKFALDGFFSSVRMEHSVTKVNVSITLCILGLINTDTAMKAVSGILSTVGASSKE 240
Query: 857 NVPWKLSKGQLCAKRKCIMTAQS*LLSCWEIQGRKILEFLS 979
++ KG + + GRKILEFLS
Sbjct: 241 ECALEIIKGGALRQEEVYYDNSVWTAFLLGNPGRKILEFLS 281
>ref|XP_542145.2| PREDICTED: similar to short-chain dehydrogenase/reductase 10
isoform e isoform 1 [Canis familiaris].
Length = 223
Score = 188 bits (477), Expect = 8e-48
Identities = 106/224 (47%), Positives = 139/224 (62%)
Frame = +2
Query: 149 MKKYLLPILGIFLAYYYYSANEEFRPEMLRGKKVIVTGASKGIGREMAYHLARMGAHVVV 328
MK LL LG YY+ N F P L+G +V++TGAS G+G E+AYH AR+G+H+V+
Sbjct: 1 MKVLLLTGLGALFFSYYWDDN--FDPASLQGARVLLTGASAGVGEELAYHYARLGSHLVL 58
Query: 329 TARSEETLKKVVSHCLELGASSAHYVAGTMEDMTFAEQFVAKAGKLLGGLDMLILNHITH 508
TA +E L+KVV +C +LGA Y+A M + V A LGGLD L+LNH+
Sbjct: 59 TAHTEAFLQKVVGNCRKLGAPEVFYIAADMASPEVPGRVVQFALDKLGGLDYLVLNHLGA 118
Query: 509 ASMTPFSDDIHLVRRSMEVNFLSYVVLSVAALPMLKQSNGSIVVVSSQAGKMANPLVAPY 688
S I R ++VN LSYV L+ ALP L S GS+VVVSS G++ +PY
Sbjct: 119 TPAGTRSRSIQGTRWLLQVNLLSYVQLTSLALPSLTDSRGSLVVVSSLLGRVPTSFSSPY 178
Query: 689 SASKFALDGFFSSIRKEYSVTKVNVSITLCILGLIDTDTAMTAV 820
SA+KFALDGFF S+R+E V VNV+IT+C+LGL D +A AV
Sbjct: 179 SAAKFALDGFFGSLRRELDVQDVNVAITMCVLGLRDRASAAEAV 222
>ref|XP_868441.1| PREDICTED: similar to short-chain dehydrogenase/reductase 10
isoform a isoform 2 [Canis familiaris].
Length = 142
Score = 110 bits (275), Expect = 2e-24
Identities = 60/117 (51%), Positives = 76/117 (64%)
Frame = +2
Query: 470 GGLDMLILNHITHASMTPFSDDIHLVRRSMEVNFLSYVVLSVAALPMLKQSNGSIVVVSS 649
GGLD L+LNH+ S I R ++VN LSYV L+ ALP L S GS+VVVSS
Sbjct: 25 GGLDYLVLNHLGATPAGTRSRSIQGTRWLLQVNLLSYVQLTSLALPSLTDSRGSLVVVSS 84
Query: 650 QAGKMANPLVAPYSASKFALDGFFSSIRKEYSVTKVNVSITLCILGLIDTDTAMTAV 820
G++ +PYSA+KFALDGFF S+R+E V VNV+IT+C+LGL D +A AV
Sbjct: 85 LLGRVPTSFSSPYSAAKFALDGFFGSLRRELDVQDVNVAITMCVLGLRDRASAAEAV 141
>ref|XP_537465.2| PREDICTED: similar to Dehydrogenase/reductase SDR family member 7
precursor (Retinal short-chain dehydrogenase/reductase
4) (retSDR4) [Canis familiaris].
Length = 437
Score = 90.5 bits (223), Expect = 2e-18
Identities = 62/178 (34%), Positives = 95/178 (53%), Gaps = 5/178 (2%)
Frame = +2
Query: 221 RPEMLRGKKVI-VTGASKGIGREMAYHLARMGAHVVVTARSEETLKKVVSHCLELGASSA 397
RPE VI VTGAS GIG E+ Y L+++G +V++AR + L++V CLE G
Sbjct: 141 RPEWELTDMVIWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKE 200
Query: 398 HYVAGTMEDMTFAEQFVAKAGKLL---GGLDMLILNHITHASMTPFSDDIHLVRRSMEVN 568
+ D+T A +L G +D+L+ N ++ + + ME+N
Sbjct: 201 KDIFVLPLDLTDRSSHEAATKAVLQEFGKIDILVNNGGQSQRSLCVDTNLDVFKELMELN 260
Query: 569 FLSYVVLSVAALP-MLKQSNGSIVVVSSQAGKMANPLVAPYSASKFALDGFFSSIRKE 739
+L V L++ LP M+++ G IV V+S G ++ PL + Y ASK AL GFF+ +R E
Sbjct: 261 YLGTVSLTMCVLPHMIERKQGKIVTVNSLLGIISAPLSSGYCASKHALRGFFNCLRVE 318
>ref|NP_001041699.1| dehydrogenase/reductase SDR family member 4 [Canis lupus
familiaris].
Length = 255
Score = 82.4 bits (202), Expect = 6e-16
Identities = 65/201 (32%), Positives = 106/201 (52%), Gaps = 8/201 (3%)
Frame = +2
Query: 221 RPEMLRGKKVIVTGASKGIGREMAYHLARMGAHVVVTARSEETLKKVVSHCLELGASSAH 400
R + L K +VT ++ GIG +A LAR GAHVVV++R + + + V+ G S
Sbjct: 3 RQDPLANKVALVTASTDGIGFAIARRLARDGAHVVVSSRKQHNVDRAVAALQGEGLSVTG 62
Query: 401 YV--AGTMEDMTFAEQFVAKAGKLLGGLDMLILNHITHASMTPFSDDIHLVR-----RSM 559
V G ED E+ VA A L GG+D+LI N A++ PF ++ V + +
Sbjct: 63 TVCHVGKAED---RERLVATAVNLHGGIDILISN----AAVNPFFGNLMDVTEEVWDKIL 115
Query: 560 EVNFLSYVVLSVAALP-MLKQSNGSIVVVSSQAGKMANPLVAPYSASKFALDGFFSSIRK 736
++N + +++ A +P M K+ GS+V+V+S + P + PY+ SK AL G ++ +
Sbjct: 116 DINVKATALMTKAVVPEMEKRGGGSVVIVASIGAYLPFPGLGPYNVSKTALLGLTKNLAR 175
Query: 737 EYSVTKVNVSITLCILGLIDT 799
E + + N+ + GLI T
Sbjct: 176 E--LDQRNIRVNCLAPGLIKT 194
>ref|XP_536670.2| PREDICTED: similar to CG7601-PA [Canis familiaris].
Length = 325
Score = 82.0 bits (201), Expect = 8e-16
Identities = 64/208 (30%), Positives = 104/208 (50%), Gaps = 9/208 (4%)
Frame = +2
Query: 233 LRGKKVIVTGASKGIGREMAYHLARMGAHVVVTARSEETLKKVVSHCLELGASSA----- 397
LR V++TGA+ G+GRE A GA +V+ R+++ L+++ EL AS A
Sbjct: 50 LRNAVVVITGATSGLGRECARVFYTAGAKLVLCGRNQKALEELTK---ELTASPATKVQT 106
Query: 398 HYVAGTMEDMTFAEQFVAKAGKLL---GGLDMLILNHITHASMTPFSDDIHLVRRSMEVN 568
H D+ +A ++L G +D+LI N + ++ ME N
Sbjct: 107 HKPYMVTFDLADPGAIIAATAEILQCFGYVDVLINNAGISYRGAIVDTTTDVDKKVMETN 166
Query: 569 FLSYVVLSVAALP-MLKQSNGSIVVVSSQAGKMANPLVAPYSASKFALDGFFSSIRKEYS 745
+ V L+ A LP M+K+ G IVV+SS GK++ P + Y+ASK A FF +R E
Sbjct: 167 YFGPVALTKALLPSMIKRRQGHIVVISSIQGKISIPFRSAYAASKHATQAFFDCLRAE-- 224
Query: 746 VTKVNVSITLCILGLIDTDTAMTAVAGN 829
+ + + +T+ G I T+ ++ AV +
Sbjct: 225 MEQYEIEVTVISPGYIHTNLSLNAVTAD 252
>ref|XP_535646.2| PREDICTED: similar to alcohol dehydrogenase PAN1B-like isoform 1
[Canis familiaris].
Length = 271
Score = 78.6 bits (192), Expect = 9e-15
Identities = 60/212 (28%), Positives = 106/212 (50%), Gaps = 5/212 (2%)
Frame = +2
Query: 161 LLPILGIFLAYYYYSANEEF--RPEMLRGKKVIVTGASKGIGREMAYHLARMGAHVVVTA 334
LL +L I +Y F + + + G+ V++TGA GIGR AY A+ + +V+
Sbjct: 8 LLLLLTIIYSYLEALVKVFFPRKRKSVAGEIVLITGAGHGIGRWTAYEFAKQKSRLVLWD 67
Query: 335 RSEETLKKVVSHCLELGASSAHYVA--GTMEDMTFAEQFVAKAGKLLGGLDMLILNHITH 508
++ +++ + C +LGA+ +V G ED+ + V + K +G + +L+ N T
Sbjct: 68 INKHGVEETAAECRKLGATVHTFVVDCGNREDIYNS---VKQVKKEVGDVTILVNNAGTV 124
Query: 509 ASMTPFSDDIHLVRRSMEVNFLSYVVLSVAALP-MLKQSNGSIVVVSSQAGKMANPLVAP 685
S + ++ E+N L + ++ A LP M+K+++G IV V+S G P + P
Sbjct: 125 YPADLLSTKDEEITKTFEINILGHFWITKALLPSMIKRNHGHIVTVASVCGHGVIPYLIP 184
Query: 686 YSASKFALDGFFSSIRKEYSVTKVNVSITLCI 781
Y +SKFA GF ++ E + T C+
Sbjct: 185 YCSSKFAAVGFHRALTLELQTLGITGIKTSCL 216
>ref|XP_850000.1| PREDICTED: similar to hydroxysteroid (17-beta) dehydrogenase 13
isoform 2 [Canis familiaris].
Length = 300
Score = 78.6 bits (192), Expect = 9e-15
Identities = 60/212 (28%), Positives = 106/212 (50%), Gaps = 5/212 (2%)
Frame = +2
Query: 161 LLPILGIFLAYYYYSANEEF--RPEMLRGKKVIVTGASKGIGREMAYHLARMGAHVVVTA 334
LL +L I +Y F + + + G+ V++TGA GIGR AY A+ + +V+
Sbjct: 8 LLLLLTIIYSYLEALVKVFFPRKRKSVAGEIVLITGAGHGIGRWTAYEFAKQKSRLVLWD 67
Query: 335 RSEETLKKVVSHCLELGASSAHYVA--GTMEDMTFAEQFVAKAGKLLGGLDMLILNHITH 508
++ +++ + C +LGA+ +V G ED+ + V + K +G + +L+ N T
Sbjct: 68 INKHGVEETAAECRKLGATVHTFVVDCGNREDIYNS---VKQVKKEVGDVTILVNNAGTV 124
Query: 509 ASMTPFSDDIHLVRRSMEVNFLSYVVLSVAALP-MLKQSNGSIVVVSSQAGKMANPLVAP 685
S + ++ E+N L + ++ A LP M+K+++G IV V+S G P + P
Sbjct: 125 YPADLLSTKDEEITKTFEINILGHFWITKALLPSMIKRNHGHIVTVASVCGHGVIPYLIP 184
Query: 686 YSASKFALDGFFSSIRKEYSVTKVNVSITLCI 781
Y +SKFA GF ++ E + T C+
Sbjct: 185 YCSSKFAAVGFHRALTLELQTLGITGIKTSCL 216
>ref|XP_544970.2| PREDICTED: similar to dehydrogenase/reductase (SDR family) member 8
[Canis familiaris].
Length = 300
Score = 77.4 bits (189), Expect = 2e-14
Identities = 58/210 (27%), Positives = 102/210 (48%), Gaps = 4/210 (1%)
Frame = +2
Query: 164 LPILGIFLAYYYYSANEEFRPEMLRGKKVIVTGASKGIGREMAYHLARMGAHVVVTARSE 343
LP+L IF + + + G+ V++TGA GIGR AY A++ + +V+ ++
Sbjct: 11 LPLLIIFTLESLLKLFIPKKRKSVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINK 70
Query: 344 ETLKKVVSHCLELGASSAHYVAGTMEDMTFAEQFVAKAGKL---LGGLDMLILNHITHAS 514
++ + C LGA +V D + E A K+ +G + +L+ N +
Sbjct: 71 HGIEDTAAECRRLGAKVHAFVV----DCSNREDIYGSATKVKAEVGDVSILVNNAGVVYT 126
Query: 515 MTPFSDDIHLVRRSMEVNFLSYVVLSVAALP-MLKQSNGSIVVVSSQAGKMANPLVAPYS 691
F+ + ++ EVN L++ + A LP M+K ++G IV V+S AG P + Y
Sbjct: 127 SDLFATQDPQIEKTFEVNVLAHFWTTKAFLPVMMKNNHGHIVTVASAAGHTGVPFLLAYC 186
Query: 692 ASKFALDGFFSSIRKEYSVTKVNVSITLCI 781
+SKFA GF ++ +E + + T C+
Sbjct: 187 SSKFAAVGFHKALTEELAALERTGVKTTCL 216
>ref|XP_852048.1| PREDICTED: similar to follicular lymphoma variant translocation 1
[Canis familiaris].
Length = 509
Score = 75.1 bits (183), Expect = 9e-14
Identities = 60/203 (29%), Positives = 96/203 (47%), Gaps = 6/203 (2%)
Frame = +2
Query: 158 YLLPILGIFLAYYYYSANEEFRPEMLRGKKVIVTGASKGIGREMAYHLARMGAHVVVTAR 337
Y+L +L F+ Y + N R VTG S GIG+ +A + GA + + AR
Sbjct: 120 YVLLLLADFVVNYNHENNSSMRNS--------VTGGSSGIGKCIAIECYKQGAFITLVAR 171
Query: 338 SEETL----KKVVSHCLELGASSAHYVAGTMEDMTFAEQFVAKAGKLLGGLDMLILNHIT 505
+E+ L K++ H + +D + E + +A + LG +DML+ N
Sbjct: 172 NEDKLLQAKKEIEKHSINDKQVVLCISVDVSQDYSQVENVIKQAQEKLGPVDMLV-NCAG 230
Query: 506 HASMTPFSD-DIHLVRRSMEVNFLSYVVLSVAALPMLKQSN-GSIVVVSSQAGKMANPLV 679
+ F D ++ R M VN+L V S A + +K+ G IV VSSQAG++
Sbjct: 231 MSLSGKFEDLEVSTFERLMSVNYLGSVYPSRAVITTMKERRVGRIVFVSSQAGQLGLFGF 290
Query: 680 APYSASKFALDGFFSSIRKEYSV 748
YS+SKFA+ G +++ E +
Sbjct: 291 TAYSSSKFAIRGLAEALQMEVEI 313
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 37,607,035
Number of extensions: 1001234
Number of successful extensions: 3470
Number of sequences better than 1.0e-05: 43
Number of HSP's gapped: 3430
Number of HSP's successfully gapped: 44
Length of query: 326
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 223
Effective length of database: 15,440,896
Effective search space: 3443319808
Effective search space used: 3443319808
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002120
(979 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001193670.1| corticosteroid 11-beta-dehydrogenase isozyme... 411 e-115
Alignment gi|NP_861420.1| corticosteroid 11-beta-dehydrogenase isozyme 1 ... 411 e-115
Alignment gi|NP_005516.1| corticosteroid 11-beta-dehydrogenase isozyme 1 ... 411 e-115
Alignment gi|NP_941995.1| hydroxysteroid 11-beta-dehydrogenase 1-like pro... 199 3e-51
Alignment gi|NP_940935.1| hydroxysteroid 11-beta-dehydrogenase 1-like pro... 194 1e-49
Alignment gi|NP_941996.1| hydroxysteroid 11-beta-dehydrogenase 1-like pro... 121 1e-27
Alignment gi|NP_941994.1| hydroxysteroid 11-beta-dehydrogenase 1-like pro... 119 4e-27
Alignment gi|NP_941997.1| hydroxysteroid 11-beta-dehydrogenase 1-like pro... 105 8e-23
Alignment gi|NP_941993.1| hydroxysteroid 11-beta-dehydrogenase 1-like pro... 100 3e-21
Alignment gi|NP_057113.1| dehydrogenase/reductase SDR family member 7 pre... 91 2e-18
>ref|NP_001193670.1| corticosteroid 11-beta-dehydrogenase isozyme 1 [Homo sapiens].
Length = 292
Score = 411 bits (1057), Expect = e-115
Identities = 213/279 (76%), Positives = 241/279 (86%)
Frame = +2
Query: 140 MAFMKKYLLPILGIFLAYYYYSANEEFRPEMLRGKKVIVTGASKGIGREMAYHLARMGAH 319
MAFMKKYLLPILG+F+AYYYYSANEEFRPEML+GKKVIVTGASKGIGREMAYHLA+MGAH
Sbjct: 1 MAFMKKYLLPILGLFMAYYYYSANEEFRPEMLQGKKVIVTGASKGIGREMAYHLAKMGAH 60
Query: 320 VVVTARSEETLKKVVSHCLELGASSAHYVAGTMEDMTFAEQFVAKAGKLLGGLDMLILNH 499
VVVTARS+ETL+KVVSHCLELGA+SAHY+AGTMEDMTFAEQFVA+AGKL+GGLDMLILNH
Sbjct: 61 VVVTARSKETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFVAQAGKLMGGLDMLILNH 120
Query: 500 ITHASMTPFSDDIHLVRRSMEVNFLSYVVLSVAALPMLKQSNGSIVVVSSQAGKMANPLV 679
IT+ S+ F DDIH VR+SMEVNFLSYVVL+VAALPMLKQSNGSIVVVSS AGK+A P+V
Sbjct: 121 ITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQSNGSIVVVSSLAGKVAYPMV 180
Query: 680 APYSASKFALDGFFSSIRKEYSVTKVNVSITLCILGLIDTDTAMTAVAGNTHVQPSPKEN 859
A YSASKFALDGFFSSIRKEYSV++VNVSITLC+LGLIDT+TAM AV+G H+Q +PKE
Sbjct: 181 AAYSASKFALDGFFSSIRKEYSVSRVNVSITLCVLGLIDTETAMKAVSGIVHMQAAPKEE 240
Query: 860 VPWKLSKGQLCAKRKCIMTAQS*LLSCWEIQGRKILEFL 976
++ KG + + + RKILEFL
Sbjct: 241 CALEIIKGGALRQEEVYYDSSLWTTLLIRNPCRKILEFL 279
>ref|NP_861420.1| corticosteroid 11-beta-dehydrogenase isozyme 1 [Homo sapiens].
Length = 292
Score = 411 bits (1057), Expect = e-115
Identities = 213/279 (76%), Positives = 241/279 (86%)
Frame = +2
Query: 140 MAFMKKYLLPILGIFLAYYYYSANEEFRPEMLRGKKVIVTGASKGIGREMAYHLARMGAH 319
MAFMKKYLLPILG+F+AYYYYSANEEFRPEML+GKKVIVTGASKGIGREMAYHLA+MGAH
Sbjct: 1 MAFMKKYLLPILGLFMAYYYYSANEEFRPEMLQGKKVIVTGASKGIGREMAYHLAKMGAH 60
Query: 320 VVVTARSEETLKKVVSHCLELGASSAHYVAGTMEDMTFAEQFVAKAGKLLGGLDMLILNH 499
VVVTARS+ETL+KVVSHCLELGA+SAHY+AGTMEDMTFAEQFVA+AGKL+GGLDMLILNH
Sbjct: 61 VVVTARSKETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFVAQAGKLMGGLDMLILNH 120
Query: 500 ITHASMTPFSDDIHLVRRSMEVNFLSYVVLSVAALPMLKQSNGSIVVVSSQAGKMANPLV 679
IT+ S+ F DDIH VR+SMEVNFLSYVVL+VAALPMLKQSNGSIVVVSS AGK+A P+V
Sbjct: 121 ITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQSNGSIVVVSSLAGKVAYPMV 180
Query: 680 APYSASKFALDGFFSSIRKEYSVTKVNVSITLCILGLIDTDTAMTAVAGNTHVQPSPKEN 859
A YSASKFALDGFFSSIRKEYSV++VNVSITLC+LGLIDT+TAM AV+G H+Q +PKE
Sbjct: 181 AAYSASKFALDGFFSSIRKEYSVSRVNVSITLCVLGLIDTETAMKAVSGIVHMQAAPKEE 240
Query: 860 VPWKLSKGQLCAKRKCIMTAQS*LLSCWEIQGRKILEFL 976
++ KG + + + RKILEFL
Sbjct: 241 CALEIIKGGALRQEEVYYDSSLWTTLLIRNPCRKILEFL 279
>ref|NP_005516.1| corticosteroid 11-beta-dehydrogenase isozyme 1 [Homo sapiens].
Length = 292
Score = 411 bits (1057), Expect = e-115
Identities = 213/279 (76%), Positives = 241/279 (86%)
Frame = +2
Query: 140 MAFMKKYLLPILGIFLAYYYYSANEEFRPEMLRGKKVIVTGASKGIGREMAYHLARMGAH 319
MAFMKKYLLPILG+F+AYYYYSANEEFRPEML+GKKVIVTGASKGIGREMAYHLA+MGAH
Sbjct: 1 MAFMKKYLLPILGLFMAYYYYSANEEFRPEMLQGKKVIVTGASKGIGREMAYHLAKMGAH 60
Query: 320 VVVTARSEETLKKVVSHCLELGASSAHYVAGTMEDMTFAEQFVAKAGKLLGGLDMLILNH 499
VVVTARS+ETL+KVVSHCLELGA+SAHY+AGTMEDMTFAEQFVA+AGKL+GGLDMLILNH
Sbjct: 61 VVVTARSKETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFVAQAGKLMGGLDMLILNH 120
Query: 500 ITHASMTPFSDDIHLVRRSMEVNFLSYVVLSVAALPMLKQSNGSIVVVSSQAGKMANPLV 679
IT+ S+ F DDIH VR+SMEVNFLSYVVL+VAALPMLKQSNGSIVVVSS AGK+A P+V
Sbjct: 121 ITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQSNGSIVVVSSLAGKVAYPMV 180
Query: 680 APYSASKFALDGFFSSIRKEYSVTKVNVSITLCILGLIDTDTAMTAVAGNTHVQPSPKEN 859
A YSASKFALDGFFSSIRKEYSV++VNVSITLC+LGLIDT+TAM AV+G H+Q +PKE
Sbjct: 181 AAYSASKFALDGFFSSIRKEYSVSRVNVSITLCVLGLIDTETAMKAVSGIVHMQAAPKEE 240
Query: 860 VPWKLSKGQLCAKRKCIMTAQS*LLSCWEIQGRKILEFL 976
++ KG + + + RKILEFL
Sbjct: 241 CALEIIKGGALRQEEVYYDSSLWTTLLIRNPCRKILEFL 279
>ref|NP_941995.1| hydroxysteroid 11-beta-dehydrogenase 1-like protein isoform b [Homo
sapiens].
Length = 286
Score = 199 bits (506), Expect = 3e-51
Identities = 112/235 (47%), Positives = 149/235 (63%), Gaps = 1/235 (0%)
Frame = +2
Query: 149 MKKYLLPILG-IFLAYYYYSANEEFRPEMLRGKKVIVTGASKGIGREMAYHLARMGAHVV 325
MK LL LG +F AYY+ ++ F P L+G +V++TGA+ G+G E+AYH AR+G+H+V
Sbjct: 1 MKVLLLTGLGALFFAYYW---DDNFDPASLQGARVLLTGANAGVGEELAYHYARLGSHLV 57
Query: 326 VTARSEETLKKVVSHCLELGASSAHYVAGTMEDMTFAEQFVAKAGKLLGGLDMLILNHIT 505
+TA +E L+KVV +C +LGA Y+A M E V A LGGLD L+LNHI
Sbjct: 58 LTAHTEALLQKVVGNCRKLGAPKVFYIAADMASPEAPESVVQFALDKLGGLDYLVLNHIG 117
Query: 506 HASMTPFSDDIHLVRRSMEVNFLSYVVLSVAALPMLKQSNGSIVVVSSQAGKMANPLVAP 685
A + R M+VNF+SYV L+ ALP L S GS+VVVSS G++ P
Sbjct: 118 GAPAGTRARSPQATRWLMQVNFVSYVQLTSRALPSLTDSKGSLVVVSSLLGRVPTSFSTP 177
Query: 686 YSASKFALDGFFSSIRKEYSVTKVNVSITLCILGLIDTDTAMTAVAGNTHVQPSP 850
YSA+KFALDGFF S+R+E V VNV+IT+C+LGL D +A AV G T V+ +P
Sbjct: 178 YSAAKFALDGFFGSLRRELDVQDVNVAITMCVLGLRDRASAAEAVRGVTRVKAAP 232
>ref|NP_940935.1| hydroxysteroid 11-beta-dehydrogenase 1-like protein isoform e [Homo
sapiens].
Length = 315
Score = 194 bits (493), Expect = 1e-49
Identities = 110/236 (46%), Positives = 147/236 (62%), Gaps = 1/236 (0%)
Frame = +2
Query: 149 MKKYLLPILG-IFLAYYYYSANEEFRPEMLRGKKVIVTGASKGIGREMAYHLARMGAHVV 325
MK LL LG +F AYY+ ++ F P L+G +V++TGA+ G+G E+AYH AR+G+H+V
Sbjct: 1 MKVLLLTGLGALFFAYYW---DDNFDPASLQGARVLLTGANAGVGEELAYHYARLGSHLV 57
Query: 326 VTARSEETLKKVVSHCLELGASSAHYVAGTMEDMTFAEQFVAKAGKLLGGLDMLILNHIT 505
+TA +E L+KVV +C +LGA Y+A M E V A LGGLD L+LNHI
Sbjct: 58 LTAHTEALLQKVVGNCRKLGAPKVFYIAADMASPEAPESVVQFALDKLGGLDYLVLNHIG 117
Query: 506 HASMTPFSDDIHLVRRSMEVNFLSYVVLSVAALPMLKQSNGSIVVVSSQAGKMANPLVAP 685
A + R M+VNF+SYV L+ ALP L S GS+VVVSS G++ P
Sbjct: 118 GAPAGTRARSPQATRWLMQVNFVSYVQLTSRALPSLTDSKGSLVVVSSLLGRVPTSFSTP 177
Query: 686 YSASKFALDGFFSSIRKEYSVTKVNVSITLCILGLIDTDTAMTAVAGNTHVQPSPK 853
YSA+KFALDGFF S+R+E V VNV+IT+C+LGL D +A AV +T P+
Sbjct: 178 YSAAKFALDGFFGSLRRELDVQDVNVAITMCVLGLRDRASAAEAVRSSTSRPRQPE 233
>ref|NP_941996.1| hydroxysteroid 11-beta-dehydrogenase 1-like protein isoform c [Homo
sapiens].
Length = 199
Score = 121 bits (303), Expect = 1e-27
Identities = 69/138 (50%), Positives = 86/138 (62%)
Frame = +2
Query: 437 EQFVAKAGKLLGGLDMLILNHITHASMTPFSDDIHLVRRSMEVNFLSYVVLSVAALPMLK 616
E V A LGGLD L+LNHI A + R M+VNF+SYV L+ ALP L
Sbjct: 8 ESVVQFALDKLGGLDYLVLNHIGGAPAGTRARSPQATRWLMQVNFVSYVQLTSRALPSLT 67
Query: 617 QSNGSIVVVSSQAGKMANPLVAPYSASKFALDGFFSSIRKEYSVTKVNVSITLCILGLID 796
S GS+VVVSS G++ PYSA+KFALDGFF S+R+E V VNV+IT+C+LGL D
Sbjct: 68 DSKGSLVVVSSLLGRVPTSFSTPYSAAKFALDGFFGSLRRELDVQDVNVAITMCVLGLRD 127
Query: 797 TDTAMTAVAGNTHVQPSP 850
+A AV G T V+ +P
Sbjct: 128 RASAAEAVRGVTRVKAAP 145
>ref|NP_941994.1| hydroxysteroid 11-beta-dehydrogenase 1-like protein isoform a [Homo
sapiens].
Length = 205
Score = 119 bits (298), Expect = 4e-27
Identities = 65/127 (51%), Positives = 82/127 (64%)
Frame = +2
Query: 470 GGLDMLILNHITHASMTPFSDDIHLVRRSMEVNFLSYVVLSVAALPMLKQSNGSIVVVSS 649
GGLD L+LNHI A + R M+VNF+SYV L+ ALP L S GS+VVVSS
Sbjct: 25 GGLDYLVLNHIGGAPAGTRARSPQATRWLMQVNFVSYVQLTSRALPSLTDSKGSLVVVSS 84
Query: 650 QAGKMANPLVAPYSASKFALDGFFSSIRKEYSVTKVNVSITLCILGLIDTDTAMTAVAGN 829
G++ PYSA+KFALDGFF S+R+E V VNV+IT+C+LGL D +A AV G
Sbjct: 85 LLGRVPTSFSTPYSAAKFALDGFFGSLRRELDVQDVNVAITMCVLGLRDRASAAEAVRGV 144
Query: 830 THVQPSP 850
T V+ +P
Sbjct: 145 TRVKAAP 151
>ref|NP_941997.1| hydroxysteroid 11-beta-dehydrogenase 1-like protein isoform d [Homo
sapiens].
Length = 152
Score = 105 bits (261), Expect = 8e-23
Identities = 54/98 (55%), Positives = 69/98 (70%)
Frame = +2
Query: 557 MEVNFLSYVVLSVAALPMLKQSNGSIVVVSSQAGKMANPLVAPYSASKFALDGFFSSIRK 736
M+VNF+SYV L+ ALP L S GS+VVVSS G++ PYSA+KFALDGFF S+R+
Sbjct: 1 MQVNFVSYVQLTSRALPSLTDSKGSLVVVSSLLGRVPTSFSTPYSAAKFALDGFFGSLRR 60
Query: 737 EYSVTKVNVSITLCILGLIDTDTAMTAVAGNTHVQPSP 850
E V VNV+IT+C+LGL D +A AV G T V+ +P
Sbjct: 61 ELDVQDVNVAITMCVLGLRDRASAAEAVRGVTRVKAAP 98
>ref|NP_941993.1| hydroxysteroid 11-beta-dehydrogenase 1-like protein isoform f [Homo
sapiens].
Length = 181
Score = 100 bits (248), Expect = 3e-21
Identities = 52/99 (52%), Positives = 67/99 (67%)
Frame = +2
Query: 557 MEVNFLSYVVLSVAALPMLKQSNGSIVVVSSQAGKMANPLVAPYSASKFALDGFFSSIRK 736
M+VNF+SYV L+ ALP L S GS+VVVSS G++ PYSA+KFALDGFF S+R+
Sbjct: 1 MQVNFVSYVQLTSRALPSLTDSKGSLVVVSSLLGRVPTSFSTPYSAAKFALDGFFGSLRR 60
Query: 737 EYSVTKVNVSITLCILGLIDTDTAMTAVAGNTHVQPSPK 853
E V VNV+IT+C+LGL D +A AV +T P+
Sbjct: 61 ELDVQDVNVAITMCVLGLRDRASAAEAVRSSTSRPRQPE 99
>ref|NP_057113.1| dehydrogenase/reductase SDR family member 7 precursor [Homo
sapiens].
Length = 339
Score = 90.9 bits (224), Expect = 2e-18
Identities = 67/207 (32%), Positives = 106/207 (51%), Gaps = 5/207 (2%)
Frame = +2
Query: 221 RPEM-LRGKKVIVTGASKGIGREMAYHLARMGAHVVVTARSEETLKKVVSHCLELGASSA 397
RPE L V VTGAS GIG E+AY L+++G +V++AR L++V CLE G
Sbjct: 43 RPEWELTDMVVWVTGASSGIGEELAYQLSKLGVSLVLSARRVHELERVKRRCLENGNLKE 102
Query: 398 HYVAGTMEDMTFAEQFVAKAGKLL---GGLDMLILNHITHASMTPFSDDIHLVRRSMEVN 568
+ D+T A +L G +D+L+ N + + R+ +E+N
Sbjct: 103 KDILVLPLDLTDTGSHEAATKAVLQEFGRIDILVNNGGMSQRSLCMDTSLDVYRKLIELN 162
Query: 569 FLSYVVLSVAALP-MLKQSNGSIVVVSSQAGKMANPLVAPYSASKFALDGFFSSIRKEYS 745
+L V L+ LP M+++ G IV V+S G ++ PL Y ASK AL GFF+ +R E +
Sbjct: 163 YLGTVSLTKCVLPHMIERKQGKIVTVNSILGIISVPLSIGYCASKHALRGFFNGLRTELA 222
Query: 746 VTKVNVSITLCILGLIDTDTAMTAVAG 826
T + ++ G + ++ ++AG
Sbjct: 223 -TYPGIIVSNICPGPVQSNIVENSLAG 248
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 36,828,160
Number of extensions: 974638
Number of successful extensions: 3432
Number of sequences better than 1.0e-05: 56
Number of HSP's gapped: 3376
Number of HSP's successfully gapped: 57
Length of query: 326
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 223
Effective length of database: 14,901,872
Effective search space: 3323117456
Effective search space used: 3323117456
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002120
(979 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001038216.1| corticosteroid 11-beta-dehydrogenase isozyme... 387 e-108
Alignment gi|NP_032314.2| corticosteroid 11-beta-dehydrogenase isozyme 1 ... 387 e-108
Alignment gi|NP_001165583.1| dehydrogenase/reductase SDR family member 7B... 87 2e-17
Alignment gi|NP_663403.1| dehydrogenase/reductase SDR family member 7B is... 87 2e-17
Alignment gi|NP_079798.2| dehydrogenase/reductase SDR family member 7 pre... 84 2e-16
Alignment gi|NP_444492.1| estradiol 17-beta-dehydrogenase 11 [Mus musculu... 79 5e-15
Alignment gi|NP_081810.1| 3-ketodihydrosphingosine reductase precursor [M... 77 2e-14
Alignment gi|NP_082066.2| dehydrogenase/reductase member 2 [Mus musculus]. 75 6e-14
Alignment gi|NP_001033027.2| dehydrogenase/reductase SDR family member 4 ... 74 2e-13
Alignment gi|NP_001156958.1| 17-beta-hydroxysteroid dehydrogenase 13 isof... 72 5e-13
>ref|NP_001038216.1| corticosteroid 11-beta-dehydrogenase isozyme 1 [Mus musculus].
Length = 292
Score = 387 bits (993), Expect = e-108
Identities = 199/280 (71%), Positives = 226/280 (80%)
Frame = +2
Query: 140 MAFMKKYLLPILGIFLAYYYYSANEEFRPEMLRGKKVIVTGASKGIGREMAYHLARMGAH 319
MA MK YLLPIL +FLAYYYYS NEEFRPEML+GKKVIVTGASKGIGREMAYHL++MGAH
Sbjct: 1 MAVMKNYLLPILVLFLAYYYYSTNEEFRPEMLQGKKVIVTGASKGIGREMAYHLSKMGAH 60
Query: 320 VVVTARSEETLKKVVSHCLELGASSAHYVAGTMEDMTFAEQFVAKAGKLLGGLDMLILNH 499
VV+TARSEE L+KVVS CLELGA+SAHY+AGTMEDMTFAEQF+ KAGKL+GGLDMLILNH
Sbjct: 61 VVLTARSEEGLQKVVSRCLELGAASAHYIAGTMEDMTFAEQFIVKAGKLMGGLDMLILNH 120
Query: 500 ITHASMTPFSDDIHLVRRSMEVNFLSYVVLSVAALPMLKQSNGSIVVVSSQAGKMANPLV 679
IT S++ F DDIH VRR MEVNFLSYVV+S AALPMLKQSNGSI V+SS AGKM P++
Sbjct: 121 ITQTSLSLFHDDIHSVRRVMEVNFLSYVVMSTAALPMLKQSNGSIAVISSLAGKMTQPMI 180
Query: 680 APYSASKFALDGFFSSIRKEYSVTKVNVSITLCILGLIDTDTAMTAVAGNTHVQPSPKEN 859
APYSASKFALDGFFS+IR E +TKVNVSITLC+LGLIDT+TAM ++G + Q SPKE
Sbjct: 181 APYSASKFALDGFFSTIRTELYITKVNVSITLCVLGLIDTETAMKEISGIINAQASPKEE 240
Query: 860 VPWKLSKGQLCAKRKCIMTAQS*LLSCWEIQGRKILEFLS 979
++ KG K + GRKI+EF S
Sbjct: 241 CALEIIKGTALRKSEVYYDKSPLTPILLGNPGRKIMEFFS 280
>ref|NP_032314.2| corticosteroid 11-beta-dehydrogenase isozyme 1 [Mus musculus].
Length = 292
Score = 387 bits (993), Expect = e-108
Identities = 199/280 (71%), Positives = 226/280 (80%)
Frame = +2
Query: 140 MAFMKKYLLPILGIFLAYYYYSANEEFRPEMLRGKKVIVTGASKGIGREMAYHLARMGAH 319
MA MK YLLPIL +FLAYYYYS NEEFRPEML+GKKVIVTGASKGIGREMAYHL++MGAH
Sbjct: 1 MAVMKNYLLPILVLFLAYYYYSTNEEFRPEMLQGKKVIVTGASKGIGREMAYHLSKMGAH 60
Query: 320 VVVTARSEETLKKVVSHCLELGASSAHYVAGTMEDMTFAEQFVAKAGKLLGGLDMLILNH 499
VV+TARSEE L+KVVS CLELGA+SAHY+AGTMEDMTFAEQF+ KAGKL+GGLDMLILNH
Sbjct: 61 VVLTARSEEGLQKVVSRCLELGAASAHYIAGTMEDMTFAEQFIVKAGKLMGGLDMLILNH 120
Query: 500 ITHASMTPFSDDIHLVRRSMEVNFLSYVVLSVAALPMLKQSNGSIVVVSSQAGKMANPLV 679
IT S++ F DDIH VRR MEVNFLSYVV+S AALPMLKQSNGSI V+SS AGKM P++
Sbjct: 121 ITQTSLSLFHDDIHSVRRVMEVNFLSYVVMSTAALPMLKQSNGSIAVISSLAGKMTQPMI 180
Query: 680 APYSASKFALDGFFSSIRKEYSVTKVNVSITLCILGLIDTDTAMTAVAGNTHVQPSPKEN 859
APYSASKFALDGFFS+IR E +TKVNVSITLC+LGLIDT+TAM ++G + Q SPKE
Sbjct: 181 APYSASKFALDGFFSTIRTELYITKVNVSITLCVLGLIDTETAMKEISGIINAQASPKEE 240
Query: 860 VPWKLSKGQLCAKRKCIMTAQS*LLSCWEIQGRKILEFLS 979
++ KG K + GRKI+EF S
Sbjct: 241 CALEIIKGTALRKSEVYYDKSPLTPILLGNPGRKIMEFFS 280
>ref|NP_001165583.1| dehydrogenase/reductase SDR family member 7B isoform 1 [Mus
musculus].
Length = 314
Score = 87.4 bits (215), Expect = 2e-17
Identities = 63/203 (31%), Positives = 101/203 (49%), Gaps = 4/203 (1%)
Frame = +2
Query: 233 LRGKKVIVTGASKGIGREMAYHLARMGAHVVVTARSEETLKKVVSHCLELGASSAHYVAG 412
LR V+VTGA+ G+GRE A GA +V+ R+ + L+++ H
Sbjct: 41 LRNAVVVVTGATSGLGRECAKVFHAAGAKLVLCGRNVKALEELSRELAGSSQGQTHQPFV 100
Query: 413 TMEDMTFAEQFVAKAGKLL---GGLDMLILNHITHASMTPFSDDIHLVRRSMEVNFLSYV 583
D+ A A ++L G +D+LI N T + + R+ ME+N+ V
Sbjct: 101 VTFDLADPGTIAAAAAEILQCFGYVDVLINNAGISYRGTISDTIVDVDRKVMEINYFGPV 160
Query: 584 VLSVAALP-MLKQSNGSIVVVSSQAGKMANPLVAPYSASKFALDGFFSSIRKEYSVTKVN 760
L+ A LP M+++ G IV +SS GK++ P + YSASK A FF +R E + + N
Sbjct: 161 ALTKALLPSMVERKQGHIVAISSIQGKISIPFRSAYSASKHATQAFFDCLRAE--MEEAN 218
Query: 761 VSITLCILGLIDTDTAMTAVAGN 829
+ +T+ G I T+ ++ AV +
Sbjct: 219 IKVTVISPGYIHTNLSVNAVTAD 241
>ref|NP_663403.1| dehydrogenase/reductase SDR family member 7B isoform 2 [Mus
musculus].
Length = 323
Score = 87.4 bits (215), Expect = 2e-17
Identities = 63/203 (31%), Positives = 101/203 (49%), Gaps = 4/203 (1%)
Frame = +2
Query: 233 LRGKKVIVTGASKGIGREMAYHLARMGAHVVVTARSEETLKKVVSHCLELGASSAHYVAG 412
LR V+VTGA+ G+GRE A GA +V+ R+ + L+++ H
Sbjct: 50 LRNAVVVVTGATSGLGRECAKVFHAAGAKLVLCGRNVKALEELSRELAGSSQGQTHQPFV 109
Query: 413 TMEDMTFAEQFVAKAGKLL---GGLDMLILNHITHASMTPFSDDIHLVRRSMEVNFLSYV 583
D+ A A ++L G +D+LI N T + + R+ ME+N+ V
Sbjct: 110 VTFDLADPGTIAAAAAEILQCFGYVDVLINNAGISYRGTISDTIVDVDRKVMEINYFGPV 169
Query: 584 VLSVAALP-MLKQSNGSIVVVSSQAGKMANPLVAPYSASKFALDGFFSSIRKEYSVTKVN 760
L+ A LP M+++ G IV +SS GK++ P + YSASK A FF +R E + + N
Sbjct: 170 ALTKALLPSMVERKQGHIVAISSIQGKISIPFRSAYSASKHATQAFFDCLRAE--MEEAN 227
Query: 761 VSITLCILGLIDTDTAMTAVAGN 829
+ +T+ G I T+ ++ AV +
Sbjct: 228 IKVTVISPGYIHTNLSVNAVTAD 250
>ref|NP_079798.2| dehydrogenase/reductase SDR family member 7 precursor [Mus
musculus].
Length = 338
Score = 84.0 bits (206), Expect = 2e-16
Identities = 58/178 (32%), Positives = 93/178 (52%), Gaps = 5/178 (2%)
Frame = +2
Query: 221 RPEM-LRGKKVIVTGASKGIGREMAYHLARMGAHVVVTARSEETLKKVVSHCLELGASSA 397
RPE L V VTGAS GIG E+A+ L+++G +V++AR + L++V CLE G
Sbjct: 43 RPEWELTDMVVWVTGASSGIGEELAFQLSKLGVSLVLSARRAQELERVKRRCLENGNLKE 102
Query: 398 HYVAGTMEDMTFAEQFVAKAGKLL---GGLDMLILNHITHASMTPFSDDIHLVRRSMEVN 568
+ D+T A +L G +D+L+ N ++ + + + +N
Sbjct: 103 KDILVLPLDLTDTSSHEAATKAVLQEFGKIDILVNNGGRSQRSLVLETNLDVFKELINLN 162
Query: 569 FLSYVVLSVAALP-MLKQSNGSIVVVSSQAGKMANPLVAPYSASKFALDGFFSSIRKE 739
++ V L+ LP M+++ G IV V+S AG + L + Y ASK AL GFF+++ E
Sbjct: 163 YIGTVSLTKCVLPHMIERKQGKIVTVNSIAGIASVSLSSGYCASKHALRGFFNALHSE 220
>ref|NP_444492.1| estradiol 17-beta-dehydrogenase 11 [Mus musculus].
Length = 298
Score = 79.0 bits (193), Expect = 5e-15
Identities = 56/197 (28%), Positives = 101/197 (51%), Gaps = 4/197 (2%)
Frame = +2
Query: 161 LLPILGIFLAYYYYSANEEFRPEMLRGKKVIVTGASKGIGREMAYHLARMGAHVVVTARS 340
LLP+L +F + + + G+ V++TGA GIGR AY A++ +V+ +
Sbjct: 10 LLPLLIVFSIESLVKLFIPKKKKSVAGEIVLITGAGHGIGRLTAYEFAKLNTKLVLWDIN 69
Query: 341 EETLKKVVSHCLELGASSAHYVAGTMEDMTFAEQFVAKAGKL---LGGLDMLILNHITHA 511
+ +++ + C +LGA + +V D + E+ + A K+ +G + +L+ N
Sbjct: 70 KNGIEETAAKCRKLGAQAHPFVV----DCSQREEIYSAAKKVKEEVGDVSILVNNAGVVY 125
Query: 512 SMTPFSDDIHLVRRSMEVNFLSYVVLSVAALP-MLKQSNGSIVVVSSQAGKMANPLVAPY 688
+ F+ + ++ EVN L++ + A LP M+K ++G IV V+S AG P + Y
Sbjct: 126 TADLFATQDPQIEKTFEVNVLAHFWTTKAFLPVMMKNNHGHIVTVASAAGHTVVPFLLAY 185
Query: 689 SASKFALDGFFSSIRKE 739
+SKFA GF ++ E
Sbjct: 186 CSSKFAAVGFHRALTDE 202
>ref|NP_081810.1| 3-ketodihydrosphingosine reductase precursor [Mus musculus].
Length = 332
Score = 77.4 bits (189), Expect = 2e-14
Identities = 67/226 (29%), Positives = 103/226 (45%), Gaps = 5/226 (2%)
Frame = +2
Query: 170 ILGIFLAYYYYSANEEFRPEMLRGKKVIVTGASKGIGREMAYHLARMGAHVVVTARSEET 349
++ L Y S +P L G V+VTG S GIG+ +A + GA + + AR+E+
Sbjct: 9 LVAFVLLLYMVSPLISPKPLALPGAHVVVTGGSSGIGKCIAIECYKQGAFITLVARNEDK 68
Query: 350 L----KKVVSHCLELGASSAHYVAGTMEDMTFAEQFVAKAGKLLGGLDMLILNHITHASM 517
L K + H + +D E + +A + LG +DML+ T S
Sbjct: 69 LLQAKKDIEKHSINDKQVVLCISVDVSQDYNQVENVIKQAQEKLGPVDMLVNCAGTSMSG 128
Query: 518 TPFSDDIHLVRRSMEVNFLSYVVLSVAALPMLKQSN-GSIVVVSSQAGKMANPLVAPYSA 694
++ + M +N+L V S A + +K+ G IV VSSQAG++ YS+
Sbjct: 129 KFEELEVSSFEKLMSINYLGSVYPSRAVITTMKERRVGRIVFVSSQAGQLGLFGFTAYSS 188
Query: 695 SKFALDGFFSSIRKEYSVTKVNVSITLCILGLIDTDTAMTAVAGNT 832
SKFA+ G +++ E V NV +T+ DTDT A T
Sbjct: 189 SKFAIRGLAEALQME--VKPYNVYVTVAYPP--DTDTPGLAEENKT 230
>ref|NP_082066.2| dehydrogenase/reductase member 2 [Mus musculus].
Length = 282
Score = 75.5 bits (184), Expect = 6e-14
Identities = 63/199 (31%), Positives = 103/199 (51%), Gaps = 6/199 (3%)
Frame = +2
Query: 233 LRGKKVIVTGASKGIGREMAYHLARMGAHVVVTARSEETLKKVVSHCLELGASSAHYVAG 412
L GK ++TG+++GIG +A LA+ GAHVV+++R +E + + V+ E G S V G
Sbjct: 35 LAGKVAVITGSTRGIGFAIARRLAQDGAHVVISSRKQENVDEAVTILKEEGLS----VTG 90
Query: 413 TMEDMTFAE---QFVAKAGKLLGGLDMLI-LNHITHASMTPFSDDIHLVRRSMEVNFLSY 580
TM + AE V A K GG+D L+ + + + + + ++VN S
Sbjct: 91 TMCHVGKAEDRQHLVTTALKHSGGIDFLVCVAGVNPLVGSTLGASEQIWDKILDVNVKSP 150
Query: 581 VVLSVAALP-MLKQSNGSIVVVSSQAGKMANPLVAPYSASKFALDGFFSSIRKEYSVTKV 757
+L LP M + GS+V+VSS + P + Y+ SK AL G S+ E + +
Sbjct: 151 ALLLSKVLPYMENRRGGSVVLVSSGVAYVPVPKLGVYNTSKTALLGLCKSLAVELAPKGI 210
Query: 758 NVSITLCIL-GLIDTDTAM 811
V+ C++ G+I TD ++
Sbjct: 211 RVN---CLVPGIIKTDFSL 226
>ref|NP_001033027.2| dehydrogenase/reductase SDR family member 4 isoform 1 [Mus
musculus].
Length = 279
Score = 73.9 bits (180), Expect = 2e-13
Identities = 62/201 (30%), Positives = 98/201 (48%), Gaps = 8/201 (3%)
Frame = +2
Query: 221 RPEMLRGKKVIVTGASKGIGREMAYHLARMGAHVVVTARSEETLKKVVSHCLELGASSAH 400
R L K +VT ++ GIG +A LA GAHVVV++R ++ + + V+ G S
Sbjct: 27 RRNPLSNKVALVTASTDGIGFAIARRLAEDGAHVVVSSRKQQNVDRAVATLQGEGLSVTG 86
Query: 401 YV--AGTMEDMTFAEQFVAKAGKLLGGLDMLILNHITHASMTPFSDDIHLVR-----RSM 559
V G ED E+ + A K G+D+L+ N A++ PF ++ V + +
Sbjct: 87 IVCHVGKAED---REKLITTALKRHQGIDILVSN----AAVNPFFGNLMDVTEEVWDKVL 139
Query: 560 EVNFLSYVVLSVAALP-MLKQSNGSIVVVSSQAGKMANPLVAPYSASKFALDGFFSSIRK 736
+N + ++ A +P M K+ GS+V+V S AG P + PY+ SK AL G +
Sbjct: 140 SINVTATAMMIKAVVPEMEKRGGGSVVIVGSVAGFTRFPSLGPYNVSKTALLGLTKNFAA 199
Query: 737 EYSVTKVNVSITLCILGLIDT 799
E + N+ + GLI T
Sbjct: 200 E--LAPKNIRVNCLAPGLIKT 218
>ref|NP_001156958.1| 17-beta-hydroxysteroid dehydrogenase 13 isoform 1 [Mus musculus].
Length = 300
Score = 72.4 bits (176), Expect = 5e-13
Identities = 57/206 (27%), Positives = 105/206 (50%), Gaps = 6/206 (2%)
Frame = +2
Query: 140 MAFMKKYLLPILGIFLAYYYYSANEEFRP---EMLRGKKVIVTGASKGIGREMAYHLARM 310
M + ++LL ++G+ + Y S + F P + + G+ V++TGA GIGR AY A+
Sbjct: 1 MNLILEFLL-LVGVIIYSYLESLVKFFIPRRRKSVTGQTVLITGAGHGIGRLTAYEFAKQ 59
Query: 311 GAHVVVTARSEETLKKVVSHCLELGASSAHYVAGTMEDMTFAEQFVAKAGKLLGGLDMLI 490
+ +V+ ++ +++ C +LGA H + V + + +G +++++
Sbjct: 60 KSRLVLWDINKRGVEETADKCRKLGA-VVHVFVVDCSNRAEIYNSVDQVKREVGDVEIVV 118
Query: 491 LN--HITHASMTPFSDDIHLVRRSMEVNFLSYVVLSVAALP-MLKQSNGSIVVVSSQAGK 661
N I A + D+ + ++ EVN L + + A LP ML++++G IV V+S G
Sbjct: 119 NNAGAIYPADLLSAKDE--EITKTFEVNILGHFWIIKALLPSMLRRNSGHIVTVASVCGH 176
Query: 662 MANPLVAPYSASKFALDGFFSSIRKE 739
P + PY +SKFA GF ++ E
Sbjct: 177 GVIPYLIPYCSSKFAAVGFHRALTAE 202
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 31,228,172
Number of extensions: 819086
Number of successful extensions: 2911
Number of sequences better than 1.0e-05: 48
Number of HSP's gapped: 2864
Number of HSP's successfully gapped: 48
Length of query: 326
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 224
Effective length of database: 12,553,887
Effective search space: 2812070688
Effective search space used: 2812070688
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002120
(979 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_999413.1| corticosteroid 11-beta-dehydrogenase isozyme 1 ... 450 e-127
Alignment gi|XP_003123133.1| PREDICTED: hydroxysteroid 11-beta-dehydrogen... 196 2e-50
Alignment gi|XP_001928783.1| PREDICTED: dehydrogenase/reductase SDR famil... 89 4e-18
Alignment gi|NP_999184.1| dehydrogenase/reductase SDR family member 4 [Su... 81 8e-16
Alignment gi|XP_001925948.1| PREDICTED: 3-ketodihydrosphingosine reductas... 80 1e-15
Alignment gi|XP_003129386.2| PREDICTED: estradiol 17-beta-dehydrogenase 1... 80 2e-15
Alignment gi|NP_001161121.1| estradiol 17-beta-dehydrogenase 2 [Sus scrof... 79 4e-15
Alignment gi|NP_001230551.1| hydroxysteroid (17-beta) dehydrogenase 13 [S... 77 1e-14
Alignment gi|XP_003132036.2| PREDICTED: dehydrogenase/reductase SDR famil... 70 1e-12
Alignment gi|NP_001182297.1| epidermal retinol dehydrogenase 2 [Sus scrof... 68 9e-12
>ref|NP_999413.1| corticosteroid 11-beta-dehydrogenase isozyme 1 [Sus scrofa].
Length = 292
Score = 450 bits (1157), Expect = e-127
Identities = 241/280 (86%), Positives = 247/280 (88%)
Frame = +2
Query: 140 MAFMKKYLLPILGIFLAYYYYSANEEFRPEMLRGKKVIVTGASKGIGREMAYHLARMGAH 319
MAFMKKYLLPILGIFLAYYYYSANEEFRPEMLRGKKVIVTGASKGIGREMAYHLARMGAH
Sbjct: 1 MAFMKKYLLPILGIFLAYYYYSANEEFRPEMLRGKKVIVTGASKGIGREMAYHLARMGAH 60
Query: 320 VVVTARSEETLKKVVSHCLELGASSAHYVAGTMEDMTFAEQFVAKAGKLLGGLDMLILNH 499
VVVTARSEETLKKVVSH LELGASSAHYVAGTMEDMTFAEQFVAKAGKLLGGLDMLILNH
Sbjct: 61 VVVTARSEETLKKVVSHSLELGASSAHYVAGTMEDMTFAEQFVAKAGKLLGGLDMLILNH 120
Query: 500 ITHASMTPFSDDIHLVRRSMEVNFLSYVVLSVAALPMLKQSNGSIVVVSSQAGKMANPLV 679
IT A MT DDIHLVRRSMEVNFLSYVVLSVAALPMLKQSNGSIVVVSSQAGKMANPLV
Sbjct: 121 ITQAFMTSVYDDIHLVRRSMEVNFLSYVVLSVAALPMLKQSNGSIVVVSSQAGKMANPLV 180
Query: 680 APYSASKFALDGFFSSIRKEYSVTKVNVSITLCILGLIDTDTAMTAVAGNTHVQPSPKEN 859
APYSASKFALDGFFSSI KEYSVTKVNVSITLCILGLIDTDTAMTAVAG +VQPSPKE
Sbjct: 181 APYSASKFALDGFFSSITKEYSVTKVNVSITLCILGLIDTDTAMTAVAGILNVQPSPKEE 240
Query: 860 VPWKLSKGQLCAKRKCIMTAQS*LLSCWEIQGRKILEFLS 979
++ KG + + + E GRKILEFLS
Sbjct: 241 CALEIIKGAALRQEEVYYDSSILTSLLLENPGRKILEFLS 280
>ref|XP_003123133.1| PREDICTED: hydroxysteroid 11-beta-dehydrogenase 1-like protein-like
[Sus scrofa].
Length = 293
Score = 196 bits (498), Expect = 2e-50
Identities = 108/235 (45%), Positives = 148/235 (62%), Gaps = 1/235 (0%)
Frame = +2
Query: 149 MKKYLLPILG-IFLAYYYYSANEEFRPEMLRGKKVIVTGASKGIGREMAYHLARMGAHVV 325
MK LL LG +F AYY+ + F P LRG +V++TGAS G+G E+AYH AR+G+H+V
Sbjct: 7 MKVLLLTGLGALFFAYYW---GDNFDPASLRGARVLLTGASAGVGEELAYHYARLGSHLV 63
Query: 326 VTARSEETLKKVVSHCLELGASSAHYVAGTMEDMTFAEQFVAKAGKLLGGLDMLILNHIT 505
+TA +E L+KVV +C +LGA Y+A M E+ V A LGGLD L+LNH+
Sbjct: 64 LTAHTEALLQKVVGNCRKLGAPKVFYIAADMASPDVPERVVQFALDKLGGLDYLVLNHLG 123
Query: 506 HASMTPFSDDIHLVRRSMEVNFLSYVVLSVAALPMLKQSNGSIVVVSSQAGKMANPLVAP 685
A + +R ++VNF+SYV L+ ALP L S GS+VVVSS G++ +P
Sbjct: 124 AAPAGTRARSAQAIRWLLQVNFISYVQLTSLALPSLTDSKGSLVVVSSLLGRVPTSFSSP 183
Query: 686 YSASKFALDGFFSSIRKEYSVTKVNVSITLCILGLIDTDTAMTAVAGNTHVQPSP 850
YSA+KFALD FF S+R+E + VNV+IT+C+LGL D +A V G T + +P
Sbjct: 184 YSAAKFALDSFFDSLRRELDMQDVNVAITMCVLGLRDHASAAEGVRGVTRAKAAP 238
>ref|XP_001928783.1| PREDICTED: dehydrogenase/reductase SDR family member 7 [Sus
scrofa].
Length = 339
Score = 89.0 bits (219), Expect = 4e-18
Identities = 61/178 (34%), Positives = 91/178 (51%), Gaps = 5/178 (2%)
Frame = +2
Query: 221 RPEM-LRGKKVIVTGASKGIGREMAYHLARMGAHVVVTARSEETLKKVVSHCLELGASSA 397
RPE L V VTGAS GIG E+ Y L+++G +V++AR + L++V CLE G
Sbjct: 43 RPEWELTDMVVWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKG 102
Query: 398 HYVAGTMEDMTFAEQFVAKAGKLL---GGLDMLILNHITHASMTPFSDDIHLVRRSMEVN 568
+ D+ +L G +D+L+ N + + + MEVN
Sbjct: 103 KDILILPLDLANRSSHEVATKAVLQEFGKIDILVNNGGVSQRSLCVDTSLDVYKELMEVN 162
Query: 569 FLSYVVLSVAALP-MLKQSNGSIVVVSSQAGKMANPLVAPYSASKFALDGFFSSIRKE 739
+L V L+ LP M+++ G I+ V+S G +A PL Y ASK AL GFF+++R E
Sbjct: 163 YLGTVSLTKCVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTE 220
>ref|NP_999184.1| dehydrogenase/reductase SDR family member 4 [Sus scrofa].
Length = 260
Score = 81.3 bits (199), Expect = 8e-16
Identities = 66/202 (32%), Positives = 105/202 (51%), Gaps = 8/202 (3%)
Frame = +2
Query: 221 RPEMLRGKKVIVTGASKGIGREMAYHLARMGAHVVVTARSEETLKKVVSHCLELGASSAH 400
R + L K +VT ++ GIG +A LA+ GAHVVV++R +E + + V+ G S
Sbjct: 8 RRKPLENKVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDRTVATLQGEGLSVTG 67
Query: 401 YV--AGTMEDMTFAEQFVAKAGKLLGGLDMLILNHITHASMTPFSDDI-----HLVRRSM 559
V G ED E+ VA A L GG+D+L+ N A++ PF +I + + +
Sbjct: 68 TVCHVGKAED---RERLVAMAVNLHGGVDILVSN----AAVNPFFGNIIDATEEVWDKIL 120
Query: 560 EVNFLSYVVLSVAALP-MLKQSNGSIVVVSSQAGKMANPLVAPYSASKFALDGFFSSIRK 736
VN + V+++ A +P M K+ GS+++VSS P + PY+ SK AL G ++
Sbjct: 121 HVNVKATVLMTKAVVPEMEKRGGGSVLIVSSVGAYHPFPNLGPYNVSKTALLGLTKNLAV 180
Query: 737 EYSVTKVNVSITLCILGLIDTD 802
E + N+ + GLI T+
Sbjct: 181 E--LAPRNIRVNCLAPGLIKTN 200
>ref|XP_001925948.1| PREDICTED: 3-ketodihydrosphingosine reductase-like [Sus scrofa].
Length = 332
Score = 80.5 bits (197), Expect = 1e-15
Identities = 68/218 (31%), Positives = 105/218 (48%), Gaps = 6/218 (2%)
Frame = +2
Query: 170 ILGIFLAYYYYSANEEFRPEMLRGKKVIVTGASKGIGREMAYHLARMGAHVVVTARSEET 349
++ L Y S +P L G V+VTG S GIG+ +A + GA + + AR+E+
Sbjct: 9 LVAFVLLLYMVSPLISPKPLALPGAHVVVTGGSSGIGKCIAIECYKQGAFITLVARNEDK 68
Query: 350 L----KKVVSHCLELGASSAHYVAGTMEDMTFAEQFVAKAGKLLGGLDMLILNHITHASM 517
L K++ H + +D + E + +A + LG +DML+ N +
Sbjct: 69 LLQAKKEIEKHSINDKQVVLCISVDVSQDYSQVENVIKQAQEKLGPVDMLV-NCAGMSLS 127
Query: 518 TPFSD-DIHLVRRSMEVNFLSYVVLSVAALPMLKQSN-GSIVVVSSQAGKMANPLVAPYS 691
F D ++ R M VN+L V S A + +K+ G IV VSSQAG++ YS
Sbjct: 128 GKFEDLEVSTFERLMSVNYLGSVYPSRAVITTMKERRVGRIVFVSSQAGQLGLFGFTAYS 187
Query: 692 ASKFALDGFFSSIRKEYSVTKVNVSITLCILGLIDTDT 805
+SKFA+ G +++ E V NV +T+ DTDT
Sbjct: 188 SSKFAIRGLAEALQME--VKPYNVYVTVAYPP--DTDT 221
>ref|XP_003129386.2| PREDICTED: estradiol 17-beta-dehydrogenase 11-like [Sus scrofa].
Length = 313
Score = 79.7 bits (195), Expect = 2e-15
Identities = 58/211 (27%), Positives = 104/211 (49%), Gaps = 4/211 (1%)
Frame = +2
Query: 161 LLPILGIFLAYYYYSANEEFRPEMLRGKKVIVTGASKGIGREMAYHLARMGAHVVVTARS 340
LLP+L IF + + + G+ V++TGA G+GR A+ A++ +V+ +
Sbjct: 10 LLPLLLIFTLESLLKLFIPKKRKSVTGEIVLITGAGHGLGRLTAFEFAKLKCKLVLWDIN 69
Query: 341 EETLKKVVSHCLELGASSAHYVAGTMEDMTFAEQFVAKAGKL---LGGLDMLILNHITHA 511
+ L++ C LG+ + +V D + E + A K+ +G + +L+ N
Sbjct: 70 KHGLEETADECKRLGSKAHAFVV----DCSDREDIYSSAKKVKAEVGDVSILVNNAGVVY 125
Query: 512 SMTPFSDDIHLVRRSMEVNFLSYVVLSVAALP-MLKQSNGSIVVVSSQAGKMANPLVAPY 688
+ F+ + ++ EVN L++ + A LP M+K ++G IV V+S AG P + Y
Sbjct: 126 TSDLFATQDPQIEKTFEVNILAHFWTTKAFLPAMMKNNHGHIVTVASAAGHAGIPFLLAY 185
Query: 689 SASKFALDGFFSSIRKEYSVTKVNVSITLCI 781
+SKFA GF ++ +E + K T C+
Sbjct: 186 CSSKFAAVGFHKALTEELAALKRTGVKTTCL 216
>ref|NP_001161121.1| estradiol 17-beta-dehydrogenase 2 [Sus scrofa].
Length = 388
Score = 79.0 bits (193), Expect = 4e-15
Identities = 75/258 (29%), Positives = 127/258 (49%), Gaps = 8/258 (3%)
Frame = +2
Query: 113 GLLGPGPCLMAFMKKY--LLPILGIFLAYYYYSANEEFRPEMLRGKKVIVTGASKGIGRE 286
GL G G CL++ + +L L FL Y Y+S +EF P + K V++TG GIG
Sbjct: 43 GLWG-GACLLSLSLFWGLILFSLSCFLMYAYFSG-QEFLP--VDQKAVLITGGDSGIGHA 98
Query: 287 MAYHLARMGAHVVVTARSEETLKKVVSHCLELGASSAHYVAGTMEDMTFAEQFVAKAGKL 466
++ +L ++G V E+ S EL + + +++ D+T ++Q K+
Sbjct: 99 LSKYLDKLGFIVFAGVLDEKG-----SGAEELRRTCSKHLSVLQLDITNSQQIRDAHSKV 153
Query: 467 LGGLDMLIL-NHITHASMTPFSDDIHLV-----RRSMEVNFLSYVVLSVAALPMLKQSNG 628
+ + L + +A + F D L+ +R M VNF V ++ A LP+L++S G
Sbjct: 154 MEKVQNRGLWAVVNNAGILGFPIDGELIPMTQYKRCMAVNFFGAVEVTKAFLPLLRKSKG 213
Query: 629 SIVVVSSQAGKMANPLVAPYSASKFALDGFFSSIRKEYSVTKVNVSITLCILGLIDTDTA 808
+V +SS AG + +A YS++K AL F + +RKE S V VS+ I +
Sbjct: 214 RLVNISSMAGGVPMEKMAAYSSTKAALTMFSAVMRKELSKWGVKVSV-------IQPGSF 266
Query: 809 MTAVAGNTHVQPSPKENV 862
T +AG + + ++N+
Sbjct: 267 QTNIAGTSDLWDKLEKNI 284
>ref|NP_001230551.1| hydroxysteroid (17-beta) dehydrogenase 13 [Sus scrofa].
Length = 300
Score = 77.0 bits (188), Expect = 1e-14
Identities = 61/214 (28%), Positives = 107/214 (50%), Gaps = 7/214 (3%)
Frame = +2
Query: 161 LLPILGIFLAYYYYSANEEFRP---EMLRGKKVIVTGASKGIGREMAYHLARMGAHVVVT 331
LL +L I + Y S + F P + + G+ V+VTGA GIGR++AY A+ + +V+
Sbjct: 7 LLFLLIIIIYSYLESLVKVFIPRRRKSVAGEIVLVTGAGHGIGRKIAYEFAKRKSRLVLW 66
Query: 332 ARSEETLKKVVSHCLELGASSAHYVAGTMEDMTFAEQF---VAKAGKLLGGLDMLILNHI 502
++ L++ + C +LGA++ +V D + E+ V + K +G + +++ N
Sbjct: 67 DINKHGLEETAAECKKLGATTHAFVV----DCSNREEIYNSVNQVKKEVGDITIVVNNAG 122
Query: 503 THASMTPFSDDIHLVRRSMEVNFLSYVVLSVAALP-MLKQSNGSIVVVSSQAGKMANPLV 679
T S + + EVN L + ++ A LP M+ +++G +V V+S G P +
Sbjct: 123 TIYPADLLSTKDEEITITFEVNILGHFWITKALLPAMMSRNHGHVVTVASLCGHGVIPYL 182
Query: 680 APYSASKFALDGFFSSIRKEYSVTKVNVSITLCI 781
PY +SKFA GF ++ E T C+
Sbjct: 183 IPYCSSKFAAVGFHRALTAELEAVGKTGIKTSCL 216
>ref|XP_003132036.2| PREDICTED: dehydrogenase/reductase SDR family member 7C-like [Sus
scrofa].
Length = 311
Score = 70.5 bits (171), Expect = 1e-12
Identities = 54/207 (26%), Positives = 96/207 (46%), Gaps = 6/207 (2%)
Frame = +2
Query: 164 LPILGIF-LAYYYYSANEEFRPEMLRGKKVIVTGASKGIGREMAYHLARMGAHVVVTARS 340
L +LGI L + Y + + ++ K V++T A G+G+E A GA +V+ ++
Sbjct: 11 LLLLGISGLLFIYQEVSRLWSKSAVQNKVVVITDAISGLGKECARVFHTGGARLVLCGKN 70
Query: 341 EETLKKVVSHCLELGASSAHY----VAGTMEDMTFAEQFVAKAGKLLGGLDMLILNHITH 508
E L+ + + + S + V + D++ + + G +D+LI N
Sbjct: 71 WERLQTLYDALISVADPSKTFTPKLVLLDLSDISCVQDVAKEVLDCYGCVDILISNASMK 130
Query: 509 ASMTPFSDDIHLVRRSMEVNFLSYVVLSVAALP-MLKQSNGSIVVVSSQAGKMANPLVAP 685
+ L ++ M+ N+ + L+ A LP M+ + G IV+V++ G++ P
Sbjct: 131 VKGPAHKISLELDKKIMDANYFGPITLTKALLPNMISRRTGQIVLVNNIQGRLGIPFRTA 190
Query: 686 YSASKFALDGFFSSIRKEYSVTKVNVS 766
Y+ASK A GFF +R E V VS
Sbjct: 191 YAASKHAALGFFDCLRAEVEEFDVVVS 217
>ref|NP_001182297.1| epidermal retinol dehydrogenase 2 [Sus scrofa].
Length = 309
Score = 67.8 bits (164), Expect = 9e-12
Identities = 61/220 (27%), Positives = 108/220 (49%), Gaps = 7/220 (3%)
Frame = +2
Query: 116 LLGPGPCLMAFMKKYLLPILGIFLAYYYYSANEEFRPEMLRGKKVIVTGASKGIGREMAY 295
+LG L+ F+ K +L ++ + + ++ + G+ V++TGA G+GR +A
Sbjct: 4 ILGLAQELLVFLGKSILVVVESLVFTFIPVPRKK-----VAGEIVLITGAGSGLGRLLAL 58
Query: 296 HLARMGAHVVV----TARSEETLKKVVSHCLELGASSAHYVAGTMEDMTFAEQFVAKAGK 463
AR+G+ +V+ R+EET K V E G + A+ + ++ K
Sbjct: 59 KFARLGSVLVLWDINQERNEETRKMV----QEAGVAGAYAYTCDCSQREDVYRVASQVKK 114
Query: 464 LLGGLDMLILNH--ITHASMTPFSDDIHLVRRSMEVNFLSYVVLSVAALP-MLKQSNGSI 634
+G + +LI N +T D+ L+ +S++VNF +++ A LP M+ +G +
Sbjct: 115 EVGDVSILINNAGIVTGRKFLDCPDE--LMEKSLDVNFKAHLWTYKAFLPAMIANDHGHL 172
Query: 635 VVVSSQAGKMANPLVAPYSASKFALDGFFSSIRKEYSVTK 754
V +SS AG + +A Y ASKFA GF ++ E +K
Sbjct: 173 VCISSSAGLIGVYGLADYCASKFAAFGFAETVFFETFASK 212
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 24,057,831
Number of extensions: 764972
Number of successful extensions: 2261
Number of sequences better than 1.0e-05: 32
Number of HSP's gapped: 2225
Number of HSP's successfully gapped: 32
Length of query: 326
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 227
Effective length of database: 8,879,129
Effective search space: 2015562283
Effective search space used: 2015562283
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002120
(979 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL894531.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 373 e-100
Sscrofa_Chr09 76 4e-11
>gb|GL894531.1| Sus scrofa unplaced genomic scaffold chrU_scaffold3187
Length = 27161
Score = 373 bits (188), Expect = e-100
Identities = 188/188 (100%)
Strand = Plus / Minus
Query: 470 gggggcctggacatgctcattctcaaccacatcacccacgcctccatgactccgtttagt 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23005 gggggcctggacatgctcattctcaaccacatcacccacgcctccatgactccgtttagt 22946
Query: 530 gacgacatccacctcgtgcgcagaagcatggaggtcaacttcctcagctacgtggtcctc 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22945 gacgacatccacctcgtgcgcagaagcatggaggtcaacttcctcagctacgtggtcctc 22886
Query: 590 agcgtggccgccttgcccatgctgaagcagagcaacgggagcatcgtggtggtctcgtcc 649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22885 agcgtggccgccttgcccatgctgaagcagagcaacgggagcatcgtggtggtctcgtcc 22826
Query: 650 caggcggg 657
||||||||
Sbjct: 22825 caggcggg 22818
Score = 295 bits (149), Expect = 2e-77
Identities = 180/185 (97%), Gaps = 4/185 (2%)
Strand = Plus / Minus
Query: 797 acagacacggccatgacagcagtggctgggaatactca-cgtacaaccatctccaaagga 855
||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct: 1251 acagacacggccatgacagcagtggctggga-tactcaacgtacaaccatctccaaagga 1193
Query: 856 -gaatgtgccctggaaattatcaaaggggcagctttgcgccaagaggaagtgtattatga 914
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1192 agaatgcgccctggaaattatcaaaggggcagctttgcgccaagaggaagtgtattatga 1133
Query: 915 cagctcaatcttgacttctctcctgctgggaaatccaggggaggaagatcctggaatttc 974
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1132 cagctcaatcttgacttctctcctgctgggaaatcca-gggaggaagatcctggaatttc 1074
Query: 975 tgtcc 979
|||||
Sbjct: 1073 tgtcc 1069
Score = 287 bits (145), Expect = 6e-75
Identities = 145/145 (100%)
Strand = Plus / Minus
Query: 656 gggaaaatggcgaatccacttgttgctccctattctgcaagcaagtttgctctggacggg 715
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3175 gggaaaatggcgaatccacttgttgctccctattctgcaagcaagtttgctctggacggg 3116
Query: 716 ttcttctcctctatcaggaaagaatattcagtgaccaaggtcaacgtgtcaatcacgctc 775
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3115 ttcttctcctctatcaggaaagaatattcagtgaccaaggtcaacgtgtcaatcacgctc 3056
Query: 776 tgtatcctcggtctcatagacacag 800
|||||||||||||||||||||||||
Sbjct: 3055 tgtatcctcggtctcatagacacag 3031
Score = 274 bits (138), Expect = 9e-71
Identities = 138/138 (100%)
Strand = Plus / Minus
Query: 224 ccagagatgcttcgaggaaagaaagtgattgtcacaggggccagcaaggggatcggaaga 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24199 ccagagatgcttcgaggaaagaaagtgattgtcacaggggccagcaaggggatcggaaga 24140
Query: 284 gagatggcctatcatctggcgaggatgggagcccatgtggtggtgacagcgaggtcagaa 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24139 gagatggcctatcatctggcgaggatgggagcccatgtggtggtgacagcgaggtcagaa 24080
Query: 344 gaaactctcaagaaggtg 361
||||||||||||||||||
Sbjct: 24079 gaaactctcaagaaggtg 24062
Score = 230 bits (116), Expect = 1e-57
Identities = 116/116 (100%)
Strand = Plus / Minus
Query: 112 agggctcctcgggccaggtccctgtctgatggcttttatgaaaaaatatctcctccctat 171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25070 agggctcctcgggccaggtccctgtctgatggcttttatgaaaaaatatctcctccctat 25011
Query: 172 tctggggatcttcttggcctactactactattccgcaaatgaggaattcagaccag 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25010 tctggggatcttcttggcctactactactattccgcaaatgaggaattcagaccag 24955
Score = 228 bits (115), Expect = 5e-57
Identities = 115/115 (100%)
Strand = Plus / Minus
Query: 357 aggtggtgtcccactgcctggagcttggcgcgtcttcagcacactacgttgctggcacca 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23221 aggtggtgtcccactgcctggagcttggcgcgtcttcagcacactacgttgctggcacca 23162
Query: 417 tggaggacatgaccttcgcagagcaatttgttgccaaagctggaaagctcctggg 471
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23161 tggaggacatgaccttcgcagagcaatttgttgccaaagctggaaagctcctggg 23107
>Sscrofa_Chr09
|| Length = 153670197
Score = 75.8 bits (38), Expect = 4e-11
Identities = 38/38 (100%)
Strand = Plus / Plus
Query: 77 tcaataaaaagaagtcaaatttggttgaaaccccaagg 114
||||||||||||||||||||||||||||||||||||||
Sbjct: 146503108 tcaataaaaagaagtcaaatttggttgaaaccccaagg 146503145
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 26,377,193
Number of extensions: 133
Number of successful extensions: 133
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 130
Number of HSP's successfully gapped: 7
Length of query: 979
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 958
Effective length of database: 2,808,413,156
Effective search space: 2690459803448
Effective search space used: 2690459803448
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)