Animal-Genome cDNA 20110601C-002190


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002190
         (1228 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001012688.1| heat shock protein HSP 90-alpha [Bos taurus].     512   e-145
Alignment   gi|NP_001073105.1| heat shock protein HSP 90-beta [Bos taurus].      454   e-128
Alignment   gi|NP_777125.1| endoplasmin precursor [Bos taurus].                  216   3e-56
Alignment   gi|NP_001033764.1| heat shock protein 75 kDa, mitochondrial pre...   176   5e-44

>ref|NP_001012688.1| heat shock protein HSP 90-alpha [Bos taurus].
          Length = 733

 Score =  512 bits (1319), Expect = e-145
 Identities = 268/328 (81%), Positives = 269/328 (82%)
 Frame = +3

Query: 186  MPEETQTQDQPMEEEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIR 365
            MPEETQ QDQPMEEEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIR
Sbjct: 1    MPEETQAQDQPMEEEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIR 60

Query: 366  YESLTDPSKLDSGKELHINLIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFME 545
            YESLTDPSKLDSGKELHINLIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFME
Sbjct: 61   YESLTDPSKLDSGKELHINLIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFME 120

Query: 546  ALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSFTVRTDTGEPM 725
            ALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSFTVRTDTGEPM
Sbjct: 121  ALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSFTVRTDTGEPM 180

Query: 726  GRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPITLFVEKERXXXXXXXXXXXXXX 905
            GRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPITLFVEKER              
Sbjct: 181  GRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPITLFVEKERDKEVSDDEAEEKED 240

Query: 906  XXXXXXXXXXXXXXXXXXXXVGSDXXXXXXXXXXXXXXXXXXXXYIDQEELNKTKPIWTR 1085
                                VGSD                    YIDQEELNKTKPIWTR
Sbjct: 241  KEEEKEKEEKESDDKPEIEDVGSDEEEEEKKDGDKKKKKKIKEKYIDQEELNKTKPIWTR 300

Query: 1086 NPDDITNEEYGEFL*SFDHDWEDHLAVK 1169
            NPDDITNEEYGEF  S  +DWEDHLAVK
Sbjct: 301  NPDDITNEEYGEFYKSLTNDWEDHLAVK 328


>ref|NP_001073105.1| heat shock protein HSP 90-beta [Bos taurus].
          Length = 724

 Score =  454 bits (1167), Expect = e-128
 Identities = 243/328 (74%), Positives = 255/328 (77%)
 Frame = +3

Query: 186  MPEETQTQDQPMEEEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIR 365
            MPEE         EEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISN+SDALDKIR
Sbjct: 1    MPEEVHHG-----EEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIR 55

Query: 366  YESLTDPSKLDSGKELHINLIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFME 545
            YESLTDPSKLDSGKEL I++IPN Q+RTLT+VDTGIGMTKADL+NNLGTIAKSGTKAFME
Sbjct: 56   YESLTDPSKLDSGKELKIDIIPNPQERTLTLVDTGIGMTKADLVNNLGTIAKSGTKAFME 115

Query: 546  ALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSFTVRTDTGEPM 725
            ALQAGADISMIGQFGVGFYSAYLVAEKV VITKHNDDEQYAWESSAGGSFTVR D GEP+
Sbjct: 116  ALQAGADISMIGQFGVGFYSAYLVAEKVVVITKHNDDEQYAWESSAGGSFTVRADHGEPI 175

Query: 726  GRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPITLFVEKERXXXXXXXXXXXXXX 905
            GRGTKVILHLKEDQTEYLEERR+KE+VKKHSQFIGYPITL++EKER              
Sbjct: 176  GRGTKVILHLKEDQTEYLEERRVKEVVKKHSQFIGYPITLYLEKER---EKEISDDEAEE 232

Query: 906  XXXXXXXXXXXXXXXXXXXXVGSDXXXXXXXXXXXXXXXXXXXXYIDQEELNKTKPIWTR 1085
                                VGSD                    YIDQEELNKTKPIWTR
Sbjct: 233  EKGEKEEEDKDDEEKPKIEDVGSD-EEDDSGKDKKKKTKKIKEKYIDQEELNKTKPIWTR 291

Query: 1086 NPDDITNEEYGEFL*SFDHDWEDHLAVK 1169
            NPDDIT EEYGEF  S  +DWEDHLAVK
Sbjct: 292  NPDDITQEEYGEFYKSLTNDWEDHLAVK 319


>ref|NP_777125.1| endoplasmin precursor [Bos taurus].
          Length = 804

 Score =  216 bits (550), Expect = 3e-56
 Identities = 114/215 (53%), Positives = 151/215 (70%), Gaps = 5/215 (2%)
 Frame = +3

Query: 228 EEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGK 407
           E+ E FAFQAE+ ++M LIIN+ Y NKEIFLRELISN+SDALDKIR  SLTD + L   +
Sbjct: 71  EKSEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENALAGNE 130

Query: 408 ELHINLIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFM----EALQAGADIS- 572
           EL + +  +K+   L + DTG+GMT+ +L+ NLGTIAKSGT  F+    EA + G   S 
Sbjct: 131 ELTVKIKCDKEKNLLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSE 190

Query: 573 MIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSFTVRTDTGEPMGRGTKVILH 752
           +IGQFGVGFYSA+LVA+KV V +KHN+D Q+ WES +     +    G  +GRGT + L 
Sbjct: 191 LIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDSNEFSVIADPRGNTLGRGTTITLV 250

Query: 753 LKEDQTEYLEERRIKEIVKKHSQFIGYPITLFVEK 857
           LKE+ ++YLE   IK +VKK+SQFI +PI ++  K
Sbjct: 251 LKEEASDYLELDTIKNLVKKYSQFINFPIYVWSSK 285


>ref|NP_001033764.1| heat shock protein 75 kDa, mitochondrial precursor [Bos taurus].
          Length = 703

 Score =  176 bits (445), Expect = 5e-44
 Identities = 110/278 (39%), Positives = 164/278 (58%), Gaps = 22/278 (7%)
 Frame = +3

Query: 78  RWAGPPLYKAGAGAACELLLRPGAAS---PRSPC------RPSAKMPEETQTQDQPMEE- 227
           R   P L  A  G       RP A S   PRS        RP +    E Q +  P+   
Sbjct: 14  RLRAPALAAACGGKPVLCPWRPPAQSWGPPRSLASSFHVGRPFSSQAAEDQAEAGPLHSV 73

Query: 228 ----EEVETFA----FQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTD 383
               E V+  A    FQAE  +L+ ++  + YS KE+F+RELISN+SDAL+K+R++ +++
Sbjct: 74  ISSLEAVQGSATKHEFQAETKKLLDIVARSLYSEKEVFIRELISNASDALEKLRHKLVSE 133

Query: 384 PSKLDSGKELHINLIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFMEALQ--A 557
              L    ++ I+L  +    T+TI DTG+GM++ +L++NLGTIA+SG+KAF++ALQ  A
Sbjct: 134 GQALP---DMEIHLQTDADRGTITIQDTGVGMSREELVSNLGTIARSGSKAFLDALQNQA 190

Query: 558 GADISMIGQFGVGFYSAYLVAEKVTVITKHNDDEQ--YAWESSAGGSFTVRTDTGEPMGR 731
            A   +IGQFGVGFYSA++VA++V V ++  D     Y W S   G F V   +G  +  
Sbjct: 191 EAGSKIIGQFGVGFYSAFMVADRVEVYSRSVDAGSLGYRWLSDGSGVFEVAEASG--VRT 248

Query: 732 GTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPITL 845
           GTK+I+HLK D  E+  E R++++V K+S F+ +P+ L
Sbjct: 249 GTKIIIHLKADSREFASEARVRDVVTKYSNFVSFPLYL 286


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 38,208,598
Number of extensions: 1075369
Number of successful extensions: 4904
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 4870
Number of HSP's successfully gapped: 5
Length of query: 409
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 304
Effective length of database: 14,207,134
Effective search space: 4318968736
Effective search space used: 4318968736
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002190
         (1228 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_848783.1| PREDICTED: similar to heat shock protein 1, alp...   509   e-144
Alignment   gi|XP_866000.1| PREDICTED: similar to heat shock protein 1, bet...   456   e-128
Alignment   gi|XP_532154.2| PREDICTED: similar to heat shock protein 1, bet...   454   e-128
Alignment   gi|XP_857137.1| PREDICTED: similar to Heat shock protein HSP 90...   441   e-124
Alignment   gi|XP_866031.1| PREDICTED: similar to heat shock protein 1, bet...   295   5e-80
Alignment   gi|XP_868585.1| PREDICTED: similar to Heat shock protein HSP 90...   288   7e-78
Alignment   gi|XP_868588.1| PREDICTED: similar to heat shock protein 1, alp...   288   1e-77
Alignment   gi|XP_537557.2| PREDICTED: similar to heat shock protein 1, alp...   288   1e-77
Alignment   gi|XP_865988.1| PREDICTED: similar to Heat shock protein HSP 90...   273   3e-73
Alignment   gi|XP_850100.1| PREDICTED: similar to Heat shock protein HSP 90...   264   1e-70

>ref|XP_848783.1| PREDICTED: similar to heat shock protein 1, alpha isoform 1 [Canis
            familiaris].
          Length = 483

 Score =  509 bits (1311), Expect = e-144
 Identities = 266/328 (81%), Positives = 269/328 (82%)
 Frame = +3

Query: 186  MPEETQTQDQPMEEEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIR 365
            MPEETQTQDQPMEEEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIR
Sbjct: 1    MPEETQTQDQPMEEEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIR 60

Query: 366  YESLTDPSKLDSGKELHINLIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFME 545
            YESLTDPSKLDSGKELHINLIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTK FME
Sbjct: 61   YESLTDPSKLDSGKELHINLIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKVFME 120

Query: 546  ALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSFTVRTDTGEPM 725
            ALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHNDD+QYAWESSAGGSFTVRTDTGEPM
Sbjct: 121  ALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHNDDKQYAWESSAGGSFTVRTDTGEPM 180

Query: 726  GRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPITLFVEKERXXXXXXXXXXXXXX 905
            GRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPITLFVEKER              
Sbjct: 181  GRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPITLFVEKERDKEVSDDEAEEKEE 240

Query: 906  XXXXXXXXXXXXXXXXXXXXVGSDXXXXXXXXXXXXXXXXXXXXYIDQEELNKTKPIWTR 1085
                                VGSD                    YIDQEELNKTKPIWTR
Sbjct: 241  KEEEKEKEEKESDDKPEIEDVGSDEEEEEKKDGDKKKKKKIKEKYIDQEELNKTKPIWTR 300

Query: 1086 NPDDITNEEYGEFL*SFDHDWEDHLAVK 1169
            NPD+ITNEEYGEF  S  +DWEDHLAVK
Sbjct: 301  NPDNITNEEYGEFYKSLTNDWEDHLAVK 328


>ref|XP_866000.1| PREDICTED: similar to heat shock protein 1, beta isoform 3 [Canis
            familiaris].
          Length = 324

 Score =  456 bits (1172), Expect = e-128
 Identities = 245/329 (74%), Positives = 256/329 (77%)
 Frame = +3

Query: 186  MPEETQTQDQPMEEEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIR 365
            MPEE         EEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISN+SDALDKIR
Sbjct: 1    MPEEVHHG-----EEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIR 55

Query: 366  YESLTDPSKLDSGKELHINLIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFME 545
            YESLTDPSKLDSGKEL I++IPN Q+RTLT+VDTGIGMTKADLINNLGTIAKSGTKAFME
Sbjct: 56   YESLTDPSKLDSGKELKIDIIPNPQERTLTLVDTGIGMTKADLINNLGTIAKSGTKAFME 115

Query: 546  ALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSFTVRTDTGEPM 725
            ALQAGADISMIGQFGVGFYSAYLVAEKV VITKHNDDEQYAWESSAGGSFTVR D GEP+
Sbjct: 116  ALQAGADISMIGQFGVGFYSAYLVAEKVVVITKHNDDEQYAWESSAGGSFTVRADHGEPI 175

Query: 726  GRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPITLFVEKERXXXXXXXXXXXXXX 905
            GRGTKVILHLKEDQTEYLEERR+KE+VKKHSQFIGYPITL++EKER              
Sbjct: 176  GRGTKVILHLKEDQTEYLEERRVKEVVKKHSQFIGYPITLYLEKER---EKEISDDEAEE 232

Query: 906  XXXXXXXXXXXXXXXXXXXXVGSDXXXXXXXXXXXXXXXXXXXXYIDQEELNKTKPIWTR 1085
                                VGSD                    YIDQEELNKTKPIWTR
Sbjct: 233  EKGEKEEEDKDDEEKPKIEDVGSD-EEDDSGKDKKKKTKKIKEKYIDQEELNKTKPIWTR 291

Query: 1086 NPDDITNEEYGEFL*SFDHDWEDHLAVKV 1172
            NPDDIT EEYGEF  S  +DWEDHLAVKV
Sbjct: 292  NPDDITQEEYGEFYKSLTNDWEDHLAVKV 320


>ref|XP_532154.2| PREDICTED: similar to heat shock protein 1, beta isoform 1 [Canis
            familiaris].
          Length = 636

 Score =  454 bits (1168), Expect = e-128
 Identities = 244/328 (74%), Positives = 255/328 (77%)
 Frame = +3

Query: 186  MPEETQTQDQPMEEEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIR 365
            MPEE         EEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISN+SDALDKIR
Sbjct: 1    MPEEVHHG-----EEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIR 55

Query: 366  YESLTDPSKLDSGKELHINLIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFME 545
            YESLTDPSKLDSGKEL I++IPN Q+RTLT+VDTGIGMTKADLINNLGTIAKSGTKAFME
Sbjct: 56   YESLTDPSKLDSGKELKIDIIPNPQERTLTLVDTGIGMTKADLINNLGTIAKSGTKAFME 115

Query: 546  ALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSFTVRTDTGEPM 725
            ALQAGADISMIGQFGVGFYSAYLVAEKV VITKHNDDEQYAWESSAGGSFTVR D GEP+
Sbjct: 116  ALQAGADISMIGQFGVGFYSAYLVAEKVVVITKHNDDEQYAWESSAGGSFTVRADHGEPI 175

Query: 726  GRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPITLFVEKERXXXXXXXXXXXXXX 905
            GRGTKVILHLKEDQTEYLEERR+KE+VKKHSQFIGYPITL++EKER              
Sbjct: 176  GRGTKVILHLKEDQTEYLEERRVKEVVKKHSQFIGYPITLYLEKER---EKEISDDEAEE 232

Query: 906  XXXXXXXXXXXXXXXXXXXXVGSDXXXXXXXXXXXXXXXXXXXXYIDQEELNKTKPIWTR 1085
                                VGSD                    YIDQEELNKTKPIWTR
Sbjct: 233  EKGEKEEEDKDDEEKPKIEDVGSD-EEDDSGKDKKKKTKKIKEKYIDQEELNKTKPIWTR 291

Query: 1086 NPDDITNEEYGEFL*SFDHDWEDHLAVK 1169
            NPDDIT EEYGEF  S  +DWEDHLAVK
Sbjct: 292  NPDDITQEEYGEFYKSLTNDWEDHLAVK 319


>ref|XP_857137.1| PREDICTED: similar to Heat shock protein HSP 90-alpha (HSP 86)
           isoform 3 [Canis familiaris].
          Length = 543

 Score =  441 bits (1135), Expect = e-124
 Identities = 224/226 (99%), Positives = 225/226 (99%)
 Frame = +3

Query: 186 MPEETQTQDQPMEEEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIR 365
           MPEETQTQDQPMEEEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIR
Sbjct: 1   MPEETQTQDQPMEEEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIR 60

Query: 366 YESLTDPSKLDSGKELHINLIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFME 545
           YESLTDPSKLDSGKELHINLIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTK FME
Sbjct: 61  YESLTDPSKLDSGKELHINLIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKVFME 120

Query: 546 ALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSFTVRTDTGEPM 725
           ALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHNDD+QYAWESSAGGSFTVRTDTGEPM
Sbjct: 121 ALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHNDDKQYAWESSAGGSFTVRTDTGEPM 180

Query: 726 GRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPITLFVEKER 863
           GRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPITLFVEKER
Sbjct: 181 GRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPITLFVEKER 226


>ref|XP_866031.1| PREDICTED: similar to heat shock protein 1, beta isoform 5 [Canis
           familiaris].
          Length = 480

 Score =  295 bits (756), Expect = 5e-80
 Identities = 154/171 (90%), Positives = 159/171 (92%)
 Frame = +3

Query: 186 MPEETQTQDQPMEEEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIR 365
           MPEE         EEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISN+SDALDKIR
Sbjct: 1   MPEEVHHG-----EEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIR 55

Query: 366 YESLTDPSKLDSGKELHINLIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFME 545
           YESLTDPSKLDSGKEL I++IPN Q+RTLT+VDTGIGMTKADLINNLGTIAKSGTKAFME
Sbjct: 56  YESLTDPSKLDSGKELKIDIIPNPQERTLTLVDTGIGMTKADLINNLGTIAKSGTKAFME 115

Query: 546 ALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSFT 698
           ALQAGADISMIGQFGVGFYSAYLVAEKV VITKHNDDEQYAWESSAGGSFT
Sbjct: 116 ALQAGADISMIGQFGVGFYSAYLVAEKVVVITKHNDDEQYAWESSAGGSFT 166


>ref|XP_868585.1| PREDICTED: similar to Heat shock protein HSP 90-alpha (HSP 86)
            isoform 2 [Canis familiaris].
          Length = 469

 Score =  288 bits (737), Expect = 7e-78
 Identities = 151/211 (71%), Positives = 153/211 (72%)
 Frame = +3

Query: 540  MEALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSFTVRTDTGE 719
            MEALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSFTVRTDTGE
Sbjct: 1    MEALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSFTVRTDTGE 60

Query: 720  PMGRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPITLFVEKERXXXXXXXXXXXX 899
            PMGRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPITLFVEKER            
Sbjct: 61   PMGRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPITLFVEKERDKEVSDDEAEEK 120

Query: 900  XXXXXXXXXXXXXXXXXXXXXXVGSDXXXXXXXXXXXXXXXXXXXXYIDQEELNKTKPIW 1079
                                  VGSD                    YIDQEELNKTKPIW
Sbjct: 121  EEKEEEKEKKEKESDDKPEIEDVGSDEEEEEKKDGDKKKKKKIKEKYIDQEELNKTKPIW 180

Query: 1080 TRNPDDITNEEYGEFL*SFDHDWEDHLAVKV 1172
            TRNPDDITNEEYGEF  S  +DWEDHLAVK+
Sbjct: 181  TRNPDDITNEEYGEFYKSLTNDWEDHLAVKM 211


>ref|XP_868588.1| PREDICTED: similar to heat shock protein 1, alpha isoform 3 [Canis
            familiaris].
          Length = 607

 Score =  288 bits (736), Expect = 1e-77
 Identities = 151/210 (71%), Positives = 152/210 (72%)
 Frame = +3

Query: 540  MEALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSFTVRTDTGE 719
            MEALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSFTVRTDTGE
Sbjct: 1    MEALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSFTVRTDTGE 60

Query: 720  PMGRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPITLFVEKERXXXXXXXXXXXX 899
            PMGRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPITLFVEKER            
Sbjct: 61   PMGRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPITLFVEKERDKEVSDDEAEEK 120

Query: 900  XXXXXXXXXXXXXXXXXXXXXXVGSDXXXXXXXXXXXXXXXXXXXXYIDQEELNKTKPIW 1079
                                  VGSD                    YIDQEELNKTKPIW
Sbjct: 121  EEKEEEKEKKEKESDDKPEIEDVGSDEEEEEKKDGDKKKKKKIKEKYIDQEELNKTKPIW 180

Query: 1080 TRNPDDITNEEYGEFL*SFDHDWEDHLAVK 1169
            TRNPDDITNEEYGEF  S  +DWEDHLAVK
Sbjct: 181  TRNPDDITNEEYGEFYKSLTNDWEDHLAVK 210


>ref|XP_537557.2| PREDICTED: similar to heat shock protein 1, alpha isoform 1 [Canis
            familiaris].
          Length = 615

 Score =  288 bits (736), Expect = 1e-77
 Identities = 151/210 (71%), Positives = 152/210 (72%)
 Frame = +3

Query: 540  MEALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSFTVRTDTGE 719
            MEALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSFTVRTDTGE
Sbjct: 1    MEALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSFTVRTDTGE 60

Query: 720  PMGRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPITLFVEKERXXXXXXXXXXXX 899
            PMGRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPITLFVEKER            
Sbjct: 61   PMGRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPITLFVEKERDKEVSDDEAEEK 120

Query: 900  XXXXXXXXXXXXXXXXXXXXXXVGSDXXXXXXXXXXXXXXXXXXXXYIDQEELNKTKPIW 1079
                                  VGSD                    YIDQEELNKTKPIW
Sbjct: 121  EEKEEEKEKKEKESDDKPEIEDVGSDEEEEEKKDGDKKKKKKIKEKYIDQEELNKTKPIW 180

Query: 1080 TRNPDDITNEEYGEFL*SFDHDWEDHLAVK 1169
            TRNPDDITNEEYGEF  S  +DWEDHLAVK
Sbjct: 181  TRNPDDITNEEYGEFYKSLTNDWEDHLAVK 210


>ref|XP_865988.1| PREDICTED: similar to Heat shock protein HSP 90-beta (HSP 84)
           (Tumor specific transplantation 84 kDa antigen) (TSTA)
           isoform 2 [Canis familiaris].
          Length = 183

 Score =  273 bits (697), Expect = 3e-73
 Identities = 147/176 (83%), Positives = 157/176 (89%), Gaps = 2/176 (1%)
 Frame = +3

Query: 186 MPEETQTQDQPMEEEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIR 365
           MPEE         EEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISN+SDALDKIR
Sbjct: 1   MPEEVHHG-----EEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIR 55

Query: 366 YESLTDPSKLDSGKELHINLIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFME 545
           YESLTDPSKLDSGKEL I++IPN Q+RTLT+VDTGIGMTKADLINNLGTIAKSGTKAFME
Sbjct: 56  YESLTDPSKLDSGKELKIDIIPNPQERTLTLVDTGIGMTKADLINNLGTIAKSGTKAFME 115

Query: 546 ALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHNDDEQ--YAWESSAGGSFTVRT 707
           ALQAGADISMIGQFGVGFYSAYLVAEKV VITKHNDDEQ   AW+ S   +F+++T
Sbjct: 116 ALQAGADISMIGQFGVGFYSAYLVAEKVVVITKHNDDEQMPLAWKKSI--NFSLQT 169


>ref|XP_850100.1| PREDICTED: similar to Heat shock protein HSP 90-beta (HSP 84)
           [Canis familiaris].
          Length = 298

 Score =  264 bits (674), Expect = 1e-70
 Identities = 147/226 (65%), Positives = 158/226 (69%)
 Frame = +3

Query: 183 KMPEETQTQDQPMEEEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKI 362
           +MPEE         EE+VETFAFQAE AQLMSLI NTF SNKEIFLRELISN+SDALDKI
Sbjct: 126 QMPEEVHHG-----EEKVETFAFQAETAQLMSLIFNTFSSNKEIFLRELISNASDALDKI 180

Query: 363 RYESLTDPSKLDSGKELHINLIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFM 542
           RYESLTD SKLDSGKEL I                                         
Sbjct: 181 RYESLTDFSKLDSGKELKI----------------------------------------- 199

Query: 543 EALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSFTVRTDTGEP 722
                  DISMIGQFGVGFYSAYLVAEKV VITKHNDDEQYAWES AGGSFTVR D GEP
Sbjct: 200 -------DISMIGQFGVGFYSAYLVAEKVVVITKHNDDEQYAWESPAGGSFTVRADHGEP 252

Query: 723 MGRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPITLFVEKE 860
           +G+GTK+ILHLKEDQTEYLEE  +KE+VKKHS+FIGYPITL++EKE
Sbjct: 253 IGQGTKMILHLKEDQTEYLEETHVKEVVKKHSKFIGYPITLYLEKE 298


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 39,754,143
Number of extensions: 1049728
Number of successful extensions: 5381
Number of sequences better than 1.0e-05: 18
Number of HSP's gapped: 5355
Number of HSP's successfully gapped: 26
Length of query: 409
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 304
Effective length of database: 15,374,224
Effective search space: 4673764096
Effective search space used: 4673764096
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002190
         (1228 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_005339.3| heat shock protein HSP 90-alpha isoform 2 [Homo...   510   e-144
Alignment   gi|NP_001017963.2| heat shock protein HSP 90-alpha isoform 1 [H...   510   e-144
Alignment   gi|NP_031381.2| heat shock protein HSP 90-beta [Homo sapiens].       454   e-128
Alignment   gi|NP_003290.1| endoplasmin precursor [Homo sapiens].                217   2e-56
Alignment   gi|NP_057376.2| heat shock protein 75 kDa, mitochondrial precur...   177   2e-44

>ref|NP_005339.3| heat shock protein HSP 90-alpha isoform 2 [Homo sapiens].
          Length = 732

 Score =  510 bits (1313), Expect = e-144
 Identities = 269/328 (82%), Positives = 270/328 (82%)
 Frame = +3

Query: 186  MPEETQTQDQPMEEEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIR 365
            MPEETQTQDQPMEEEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIR
Sbjct: 1    MPEETQTQDQPMEEEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIR 60

Query: 366  YESLTDPSKLDSGKELHINLIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFME 545
            YESLTDPSKLDSGKELHINLIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFME
Sbjct: 61   YESLTDPSKLDSGKELHINLIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFME 120

Query: 546  ALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSFTVRTDTGEPM 725
            ALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSFTVRTDTGEPM
Sbjct: 121  ALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSFTVRTDTGEPM 180

Query: 726  GRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPITLFVEKERXXXXXXXXXXXXXX 905
            GRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPITLFVEKER              
Sbjct: 181  GRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPITLFVEKERDKEVSDDEAEEKED 240

Query: 906  XXXXXXXXXXXXXXXXXXXXVGSDXXXXXXXXXXXXXXXXXXXXYIDQEELNKTKPIWTR 1085
                                VGSD                    YIDQEELNKTKPIWTR
Sbjct: 241  KEEEKEKEEKESEDKPEIEDVGSD-EEEEKKDGDKKKKKKIKEKYIDQEELNKTKPIWTR 299

Query: 1086 NPDDITNEEYGEFL*SFDHDWEDHLAVK 1169
            NPDDITNEEYGEF  S  +DWEDHLAVK
Sbjct: 300  NPDDITNEEYGEFYKSLTNDWEDHLAVK 327


>ref|NP_001017963.2| heat shock protein HSP 90-alpha isoform 1 [Homo sapiens].
          Length = 854

 Score =  510 bits (1313), Expect = e-144
 Identities = 269/328 (82%), Positives = 270/328 (82%)
 Frame = +3

Query: 186  MPEETQTQDQPMEEEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIR 365
            MPEETQTQDQPMEEEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIR
Sbjct: 123  MPEETQTQDQPMEEEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIR 182

Query: 366  YESLTDPSKLDSGKELHINLIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFME 545
            YESLTDPSKLDSGKELHINLIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFME
Sbjct: 183  YESLTDPSKLDSGKELHINLIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFME 242

Query: 546  ALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSFTVRTDTGEPM 725
            ALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSFTVRTDTGEPM
Sbjct: 243  ALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSFTVRTDTGEPM 302

Query: 726  GRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPITLFVEKERXXXXXXXXXXXXXX 905
            GRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPITLFVEKER              
Sbjct: 303  GRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPITLFVEKERDKEVSDDEAEEKED 362

Query: 906  XXXXXXXXXXXXXXXXXXXXVGSDXXXXXXXXXXXXXXXXXXXXYIDQEELNKTKPIWTR 1085
                                VGSD                    YIDQEELNKTKPIWTR
Sbjct: 363  KEEEKEKEEKESEDKPEIEDVGSD-EEEEKKDGDKKKKKKIKEKYIDQEELNKTKPIWTR 421

Query: 1086 NPDDITNEEYGEFL*SFDHDWEDHLAVK 1169
            NPDDITNEEYGEF  S  +DWEDHLAVK
Sbjct: 422  NPDDITNEEYGEFYKSLTNDWEDHLAVK 449


>ref|NP_031381.2| heat shock protein HSP 90-beta [Homo sapiens].
          Length = 724

 Score =  454 bits (1168), Expect = e-128
 Identities = 244/328 (74%), Positives = 255/328 (77%)
 Frame = +3

Query: 186  MPEETQTQDQPMEEEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIR 365
            MPEE         EEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISN+SDALDKIR
Sbjct: 1    MPEEVHHG-----EEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIR 55

Query: 366  YESLTDPSKLDSGKELHINLIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFME 545
            YESLTDPSKLDSGKEL I++IPN Q+RTLT+VDTGIGMTKADLINNLGTIAKSGTKAFME
Sbjct: 56   YESLTDPSKLDSGKELKIDIIPNPQERTLTLVDTGIGMTKADLINNLGTIAKSGTKAFME 115

Query: 546  ALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSFTVRTDTGEPM 725
            ALQAGADISMIGQFGVGFYSAYLVAEKV VITKHNDDEQYAWESSAGGSFTVR D GEP+
Sbjct: 116  ALQAGADISMIGQFGVGFYSAYLVAEKVVVITKHNDDEQYAWESSAGGSFTVRADHGEPI 175

Query: 726  GRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPITLFVEKERXXXXXXXXXXXXXX 905
            GRGTKVILHLKEDQTEYLEERR+KE+VKKHSQFIGYPITL++EKER              
Sbjct: 176  GRGTKVILHLKEDQTEYLEERRVKEVVKKHSQFIGYPITLYLEKER---EKEISDDEAEE 232

Query: 906  XXXXXXXXXXXXXXXXXXXXVGSDXXXXXXXXXXXXXXXXXXXXYIDQEELNKTKPIWTR 1085
                                VGSD                    YIDQEELNKTKPIWTR
Sbjct: 233  EKGEKEEEDKDDEEKPKIEDVGSD-EEDDSGKDKKKKTKKIKEKYIDQEELNKTKPIWTR 291

Query: 1086 NPDDITNEEYGEFL*SFDHDWEDHLAVK 1169
            NPDDIT EEYGEF  S  +DWEDHLAVK
Sbjct: 292  NPDDITQEEYGEFYKSLTNDWEDHLAVK 319


>ref|NP_003290.1| endoplasmin precursor [Homo sapiens].
          Length = 803

 Score =  217 bits (552), Expect = 2e-56
 Identities = 114/215 (53%), Positives = 151/215 (70%), Gaps = 5/215 (2%)
 Frame = +3

Query: 228 EEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGK 407
           E+ E FAFQAE+ ++M LIIN+ Y NKEIFLRELISN+SDALDKIR  SLTD + L   +
Sbjct: 71  EKSEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENALSGNE 130

Query: 408 ELHINLIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFM----EALQAGADIS- 572
           EL + +  +K+   L + DTG+GMT+ +L+ NLGTIAKSGT  F+    EA + G   S 
Sbjct: 131 ELTVKIKCDKEKNLLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSE 190

Query: 573 MIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSFTVRTDTGEPMGRGTKVILH 752
           +IGQFGVGFYSA+LVA+KV V +KHN+D Q+ WES +     +    G  +GRGT + L 
Sbjct: 191 LIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDSNEFSVIADPRGNTLGRGTTITLV 250

Query: 753 LKEDQTEYLEERRIKEIVKKHSQFIGYPITLFVEK 857
           LKE+ ++YLE   IK +VKK+SQFI +PI ++  K
Sbjct: 251 LKEEASDYLELDTIKNLVKKYSQFINFPIYVWSSK 285


>ref|NP_057376.2| heat shock protein 75 kDa, mitochondrial precursor [Homo sapiens].
          Length = 704

 Score =  177 bits (449), Expect = 2e-44
 Identities = 93/203 (45%), Positives = 141/203 (69%), Gaps = 4/203 (1%)
 Frame = +3

Query: 249 FQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLI 428
           FQAE  +L+ ++  + YS KE+F+RELISN+SDAL+K+R++ ++D   L    E+ I+L 
Sbjct: 90  FQAETKKLLDIVARSLYSEKEVFIRELISNASDALEKLRHKLVSDGQALP---EMEIHLQ 146

Query: 429 PNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADIS--MIGQFGVGFY 602
            N +  T+TI DTGIGMT+ +L++NLGTIA+SG+KAF++ALQ  A+ S  +IGQFGVGFY
Sbjct: 147 TNAEKGTITIQDTGIGMTQEELVSNLGTIARSGSKAFLDALQNQAEASSKIIGQFGVGFY 206

Query: 603 SAYLVAEKVTVITKHNDDEQ--YAWESSAGGSFTVRTDTGEPMGRGTKVILHLKEDQTEY 776
           SA++VA++V V ++        Y W S   G F +   +G  +  GTK+I+HLK D  E+
Sbjct: 207 SAFMVADRVEVYSRSAAPGSLGYQWLSDGSGVFEIAEASG--VRTGTKIIIHLKSDCKEF 264

Query: 777 LEERRIKEIVKKHSQFIGYPITL 845
             E R++++V K+S F+ +P+ L
Sbjct: 265 SSEARVRDVVTKYSNFVSFPLYL 287


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 38,762,904
Number of extensions: 1014262
Number of successful extensions: 5040
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 5011
Number of HSP's successfully gapped: 8
Length of query: 409
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 304
Effective length of database: 14,835,944
Effective search space: 4510126976
Effective search space used: 4510126976
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002190
         (1228 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_034610.1| heat shock protein HSP 90-alpha [Mus musculus].      511   e-145
Alignment   gi|NP_032328.2| heat shock protein HSP 90-beta [Mus musculus].       454   e-128
Alignment   gi|NP_035761.1| endoplasmin [Mus musculus].                          215   6e-56
Alignment   gi|NP_080784.1| heat shock protein 75 kDa, mitochondrial precur...   176   3e-44

>ref|NP_034610.1| heat shock protein HSP 90-alpha [Mus musculus].
          Length = 733

 Score =  511 bits (1315), Expect = e-145
 Identities = 267/328 (81%), Positives = 270/328 (82%)
 Frame = +3

Query: 186  MPEETQTQDQPMEEEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIR 365
            MPEETQTQDQPMEEEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIR
Sbjct: 1    MPEETQTQDQPMEEEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIR 60

Query: 366  YESLTDPSKLDSGKELHINLIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFME 545
            YESLTDPSKLDSGKELHINLIP+KQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFME
Sbjct: 61   YESLTDPSKLDSGKELHINLIPSKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFME 120

Query: 546  ALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSFTVRTDTGEPM 725
            ALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSFTVRTDTGEPM
Sbjct: 121  ALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSFTVRTDTGEPM 180

Query: 726  GRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPITLFVEKERXXXXXXXXXXXXXX 905
            GRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPITLFVEKER              
Sbjct: 181  GRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPITLFVEKERDKEVSDDEAEEKEE 240

Query: 906  XXXXXXXXXXXXXXXXXXXXVGSDXXXXXXXXXXXXXXXXXXXXYIDQEELNKTKPIWTR 1085
                                VGSD                    YIDQEELNKTKPIWTR
Sbjct: 241  KEEEKEKEEKESDDKPEIEDVGSDEEEEEKKDGDKKKKKKIKEKYIDQEELNKTKPIWTR 300

Query: 1086 NPDDITNEEYGEFL*SFDHDWEDHLAVK 1169
            NPDDITNEEYGEF  S  +DWE+HLAVK
Sbjct: 301  NPDDITNEEYGEFYKSLTNDWEEHLAVK 328


>ref|NP_032328.2| heat shock protein HSP 90-beta [Mus musculus].
          Length = 724

 Score =  454 bits (1168), Expect = e-128
 Identities = 244/328 (74%), Positives = 255/328 (77%)
 Frame = +3

Query: 186  MPEETQTQDQPMEEEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIR 365
            MPEE         EEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISN+SDALDKIR
Sbjct: 1    MPEEVHHG-----EEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIR 55

Query: 366  YESLTDPSKLDSGKELHINLIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFME 545
            YESLTDPSKLDSGKEL I++IPN Q+RTLT+VDTGIGMTKADLINNLGTIAKSGTKAFME
Sbjct: 56   YESLTDPSKLDSGKELKIDIIPNPQERTLTLVDTGIGMTKADLINNLGTIAKSGTKAFME 115

Query: 546  ALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSFTVRTDTGEPM 725
            ALQAGADISMIGQFGVGFYSAYLVAEKV VITKHNDDEQYAWESSAGGSFTVR D GEP+
Sbjct: 116  ALQAGADISMIGQFGVGFYSAYLVAEKVVVITKHNDDEQYAWESSAGGSFTVRADHGEPI 175

Query: 726  GRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPITLFVEKERXXXXXXXXXXXXXX 905
            GRGTKVILHLKEDQTEYLEERR+KE+VKKHSQFIGYPITL++EKER              
Sbjct: 176  GRGTKVILHLKEDQTEYLEERRVKEVVKKHSQFIGYPITLYLEKER---EKEISDDEAEE 232

Query: 906  XXXXXXXXXXXXXXXXXXXXVGSDXXXXXXXXXXXXXXXXXXXXYIDQEELNKTKPIWTR 1085
                                VGSD                    YIDQEELNKTKPIWTR
Sbjct: 233  EKGEKEEEDKEDEEKPKIEDVGSD-EEDDSGKDKKKKTKKIKEKYIDQEELNKTKPIWTR 291

Query: 1086 NPDDITNEEYGEFL*SFDHDWEDHLAVK 1169
            NPDDIT EEYGEF  S  +DWEDHLAVK
Sbjct: 292  NPDDITQEEYGEFYKSLTNDWEDHLAVK 319


>ref|NP_035761.1| endoplasmin [Mus musculus].
          Length = 802

 Score =  215 bits (547), Expect = 6e-56
 Identities = 113/215 (52%), Positives = 151/215 (70%), Gaps = 5/215 (2%)
 Frame = +3

Query: 228 EEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGK 407
           E+ E FAFQAE+ ++M LIIN+ Y NKEIFLRELISN+SDALDKIR  SLTD + L   +
Sbjct: 71  EKSEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENALAGNE 130

Query: 408 ELHINLIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFM----EALQAGADIS- 572
           EL + +  +K+   L + DTG+GMT+ +L+ NLGTIAKSGT  F+    EA + G   S 
Sbjct: 131 ELTVKIKCDKEKNLLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSE 190

Query: 573 MIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSFTVRTDTGEPMGRGTKVILH 752
           +IGQFGVGFYSA+LVA+KV V +KHN+D Q+ WES +     +    G  +GRGT + L 
Sbjct: 191 LIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDSNEFSVIADPRGNTLGRGTTITLV 250

Query: 753 LKEDQTEYLEERRIKEIVKKHSQFIGYPITLFVEK 857
           LKE+ ++YLE   IK +V+K+SQFI +PI ++  K
Sbjct: 251 LKEEASDYLELDTIKNLVRKYSQFINFPIYVWSSK 285


>ref|NP_080784.1| heat shock protein 75 kDa, mitochondrial precursor [Mus musculus].
          Length = 706

 Score =  176 bits (446), Expect = 3e-44
 Identities = 94/208 (45%), Positives = 142/208 (68%), Gaps = 4/208 (1%)
 Frame = +3

Query: 234 VETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGKEL 413
           V    FQAE  +L+ ++  + YS KE+F+RELISN+SDAL+K+R++ + +   L    E+
Sbjct: 87  VSKHEFQAETKKLLDIVARSLYSEKEVFIRELISNASDALEKLRHKLVCEGQVLP---EM 143

Query: 414 HINLIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADIS--MIGQF 587
            I+L  + +  T+TI DTGIGMT+ +L++NLGTIA+SG+KAF+EALQ  A+ S  +IGQF
Sbjct: 144 EIHLQTDAKKGTITIQDTGIGMTQEELVSNLGTIARSGSKAFLEALQNQAETSSKIIGQF 203

Query: 588 GVGFYSAYLVAEKVTVITKHNDDEQ--YAWESSAGGSFTVRTDTGEPMGRGTKVILHLKE 761
           GVGFYSA++VA+KV V ++    E   Y W S   G F +   +G  +  GTK+I+HLK 
Sbjct: 204 GVGFYSAFMVADKVEVYSRSAAPESPGYQWLSDGSGVFEIAEASG--VRPGTKIIIHLKS 261

Query: 762 DQTEYLEERRIKEIVKKHSQFIGYPITL 845
           D  ++  E R++++V K+S F+ +P+ L
Sbjct: 262 DCKDFASESRVQDVVTKYSNFVSFPLYL 289


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 32,694,770
Number of extensions: 842018
Number of successful extensions: 4158
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 4134
Number of HSP's successfully gapped: 5
Length of query: 409
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 305
Effective length of database: 12,493,815
Effective search space: 3810613575
Effective search space used: 3810613575
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002190
         (1228 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_999138.1| heat shock protein HSP 90-alpha [Sus scrofa].        514   e-146
Alignment   gi|XP_001929605.1| PREDICTED: heat shock protein HSP 90-beta is...   454   e-128
Alignment   gi|NP_999268.1| endoplasmin precursor [Sus scrofa].                  216   2e-56
Alignment   gi|NP_001230874.1| TNF receptor-associated protein 1 [Sus scrof...   177   1e-44

>ref|NP_999138.1| heat shock protein HSP 90-alpha [Sus scrofa].
          Length = 733

 Score =  514 bits (1324), Expect = e-146
 Identities = 269/328 (82%), Positives = 270/328 (82%)
 Frame = +3

Query: 186  MPEETQTQDQPMEEEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIR 365
            MPEETQTQDQPMEEEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIR
Sbjct: 1    MPEETQTQDQPMEEEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIR 60

Query: 366  YESLTDPSKLDSGKELHINLIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFME 545
            YESLTDPSKLDSGKELHINLIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFME
Sbjct: 61   YESLTDPSKLDSGKELHINLIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFME 120

Query: 546  ALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSFTVRTDTGEPM 725
            ALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSFTVRTDTGEPM
Sbjct: 121  ALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSFTVRTDTGEPM 180

Query: 726  GRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPITLFVEKERXXXXXXXXXXXXXX 905
            GRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPITLFVEKER              
Sbjct: 181  GRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPITLFVEKERDKEVSDDEAEEKED 240

Query: 906  XXXXXXXXXXXXXXXXXXXXVGSDXXXXXXXXXXXXXXXXXXXXYIDQEELNKTKPIWTR 1085
                                VGSD                    YIDQEELNKTKPIWTR
Sbjct: 241  KEEEKEKEEKESEDKPEIEDVGSDEEEEEKKDGDKKKKKKIKEKYIDQEELNKTKPIWTR 300

Query: 1086 NPDDITNEEYGEFL*SFDHDWEDHLAVK 1169
            NPDDITNEEYGEF  S  +DWEDHLAVK
Sbjct: 301  NPDDITNEEYGEFYKSLTNDWEDHLAVK 328


>ref|XP_001929605.1| PREDICTED: heat shock protein HSP 90-beta isoform 1 [Sus scrofa].
          Length = 724

 Score =  454 bits (1168), Expect = e-128
 Identities = 244/328 (74%), Positives = 255/328 (77%)
 Frame = +3

Query: 186  MPEETQTQDQPMEEEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIR 365
            MPEE         EEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISN+SDALDKIR
Sbjct: 1    MPEEVHHG-----EEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIR 55

Query: 366  YESLTDPSKLDSGKELHINLIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFME 545
            YESLTDPSKLDSGKEL I++IPN Q+RTLT+VDTGIGMTKADLINNLGTIAKSGTKAFME
Sbjct: 56   YESLTDPSKLDSGKELKIDIIPNPQERTLTLVDTGIGMTKADLINNLGTIAKSGTKAFME 115

Query: 546  ALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSFTVRTDTGEPM 725
            ALQAGADISMIGQFGVGFYSAYLVAEKV VITKHNDDEQYAWESSAGGSFTVR D GEP+
Sbjct: 116  ALQAGADISMIGQFGVGFYSAYLVAEKVVVITKHNDDEQYAWESSAGGSFTVRADHGEPI 175

Query: 726  GRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPITLFVEKERXXXXXXXXXXXXXX 905
            GRGTKVILHLKEDQTEYLEERR+KE+VKKHSQFIGYPITL++EKER              
Sbjct: 176  GRGTKVILHLKEDQTEYLEERRVKEVVKKHSQFIGYPITLYLEKER---EKEISDDEAEE 232

Query: 906  XXXXXXXXXXXXXXXXXXXXVGSDXXXXXXXXXXXXXXXXXXXXYIDQEELNKTKPIWTR 1085
                                VGSD                    YIDQEELNKTKPIWTR
Sbjct: 233  EKGDKEEEDKDDEEKPKIEDVGSD-EEDDSGKDKKKKTKKIKEKYIDQEELNKTKPIWTR 291

Query: 1086 NPDDITNEEYGEFL*SFDHDWEDHLAVK 1169
            NPDDIT EEYGEF  S  +DWEDHLAVK
Sbjct: 292  NPDDITQEEYGEFYKSLTNDWEDHLAVK 319


>ref|NP_999268.1| endoplasmin precursor [Sus scrofa].
          Length = 804

 Score =  216 bits (550), Expect = 2e-56
 Identities = 114/215 (53%), Positives = 151/215 (70%), Gaps = 5/215 (2%)
 Frame = +3

Query: 228 EEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGK 407
           E+ E FAFQAE+ ++M LIIN+ Y NKEIFLRELISN+SDALDKIR  SLTD + L   +
Sbjct: 71  EKSEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENALAGNE 130

Query: 408 ELHINLIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFM----EALQAGADIS- 572
           EL + +  +K+   L + DTG+GMT+ +L+ NLGTIAKSGT  F+    EA + G   S 
Sbjct: 131 ELTVKIKCDKEKNLLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSE 190

Query: 573 MIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSFTVRTDTGEPMGRGTKVILH 752
           +IGQFGVGFYSA+LVA+KV V +KHN+D Q+ WES +     +    G  +GRGT + L 
Sbjct: 191 LIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDSNEFSVIADPRGNTLGRGTTITLV 250

Query: 753 LKEDQTEYLEERRIKEIVKKHSQFIGYPITLFVEK 857
           LKE+ ++YLE   IK +VKK+SQFI +PI ++  K
Sbjct: 251 LKEEASDYLELDTIKNLVKKYSQFINFPIYVWSSK 285


>ref|NP_001230874.1| TNF receptor-associated protein 1 [Sus scrofa].
          Length = 702

 Score =  177 bits (448), Expect = 1e-44
 Identities = 95/237 (40%), Positives = 151/237 (63%), Gaps = 12/237 (5%)
 Frame = +3

Query: 171 RPSAKMPEETQTQDQP--------MEEEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRE 326
           RP +    E + ++ P          +  V    FQAE  +L+ ++  + YS KE+F+RE
Sbjct: 54  RPFSSQAAEDRKEEPPHCIISSSETVQGSVSKHEFQAETKKLLDIVARSLYSEKEVFIRE 113

Query: 327 LISNSSDALDKIRYESLTDPSKLDSGKELHINLIPNKQDRTLTIVDTGIGMTKADLINNL 506
           LISN+SDAL+++R++ +++   L    E+ I+L  + +  T+TI DTG+GMT+ +L++NL
Sbjct: 114 LISNASDALERLRHKLVSEGQTLP---EMEIHLQTDSEKGTITIQDTGVGMTREELVSNL 170

Query: 507 GTIAKSGTKAFMEALQAGADIS--MIGQFGVGFYSAYLVAEKVTVITKHND--DEQYAWE 674
           GTIA+SG+KAF++ALQ  A+ S  +IGQFGVGFYSA++VA+KV V ++  D     + W 
Sbjct: 171 GTIARSGSKAFLDALQNQAEASGKIIGQFGVGFYSAFMVADKVEVYSRSVDAGSPGFQWL 230

Query: 675 SSAGGSFTVRTDTGEPMGRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPITL 845
           S   G F +    G  +  GTK+I+HLK D  E+  E R++++V K+S F+ +P+ L
Sbjct: 231 SDGSGVFEIAEAAG--VRTGTKIIIHLKADSREFAHEARVRDVVTKYSNFVSFPLYL 285


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 25,310,517
Number of extensions: 789792
Number of successful extensions: 3338
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 3304
Number of HSP's successfully gapped: 5
Length of query: 409
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 308
Effective length of database: 8,829,335
Effective search space: 2719435180
Effective search space used: 2719435180
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002190
         (1228 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr07                                                         309   2e-81
Sscrofa_Chr02                                                          92   9e-16

>Sscrofa_Chr07 
||          Length = 134764511

 Score =  309 bits (156), Expect = 2e-81
 Identities = 159/160 (99%)
 Strand = Plus / Plus

                                                                             
Query: 26        ttggggagggttcttccggaaggttcgggaggcttctggaaaaggcgccgcgcgctgggc 85
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129758411 ttggggagggttcttccggaaggttcgggaggcttctggaaaaggcgccgcgcgctgggc 129758470

                                                                             
Query: 86        gggcccgcctctatataaggcaggcgcgggggcggcgtgcgagttgcttctgcgtcctgg 145
                 |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 129758471 gggcccgcctctatataaggcaggcgcgggggcggcgtgccagttgcttctgcgtcctgg 129758530

                                                         
Query: 146       tgctgcgtcgccgcggagcccgtgccgtccttcagccaag 185
                 ||||||||||||||||||||||||||||||||||||||||
Sbjct: 129758531 tgctgcgtcgccgcggagcccgtgccgtccttcagccaag 129758570



 Score = 99.6 bits (50), Expect = 4e-18
 Identities = 110/130 (84%)
 Strand = Plus / Plus

                                                                            
Query: 553      aggccggtgccgatatctcgatgattggccagttcggtgtcggcttctactctgcgtacc 612
                |||| ||||| || ||||| |||||||| ||||| ||||| |||||||| ||||| ||||
Sbjct: 45115598 aggctggtgcagacatctccatgattggacagtttggtgttggcttctattctgcctacc 45115657

                                                                            
Query: 613      tggtcgctgagaaagtgaccgttatcaccaaacacaacgatgacgagcagtatgcctggg 672
                |||| || |||||||||   || ||||| || ||||| ||||| || |||||||||||||
Sbjct: 45115658 tggtggcagagaaagtggttgtgatcacaaagcacaatgatgatgaacagtatgcctggg 45115717

                          
Query: 673      agtcttctgc 682
                ||||||||||
Sbjct: 45115718 agtcttctgc 45115727



 Score = 69.9 bits (35), Expect = 3e-09
 Identities = 80/95 (84%)
 Strand = Plus / Plus

                                                                            
Query: 225      gaggaggaggtggagacgttcgccttccaggcggaaatcgcccagttgatgtcgttgatc 284
                |||||||| |||||||| || ||||||||||| |||||||||||| | |||||  | |||
Sbjct: 45114878 gaggaggaagtggagacttttgccttccaggcagaaatcgcccagctcatgtctctcatc 45114937

                                                   
Query: 285      atcaacactttctactcgaacaaggagatctttct 319
                ||||| || || || || ||||||||||| |||||
Sbjct: 45114938 atcaataccttttattccaacaaggagatttttct 45114972



 Score = 65.9 bits (33), Expect = 5e-08
 Identities = 57/65 (87%)
 Strand = Plus / Plus

                                                                            
Query: 1038     tatattgatcaagaggaactcaacaagacaaagcctatttggaccagaaaccccgatgac 1097
                ||||||||||| || ||||| |||||||| ||||| || |||||||| ||||| ||||||
Sbjct: 45116308 tatattgatcaggaagaactgaacaagaccaagcccatctggaccaggaaccctgatgac 45116367

                     
Query: 1098     atcac 1102
                |||||
Sbjct: 45116368 atcac 45116372


>Sscrofa_Chr02 
||          Length = 162569375

 Score = 91.7 bits (46), Expect = 9e-16
 Identities = 215/269 (79%), Gaps = 8/269 (2%)
 Strand = Plus / Plus

                                                                            
Query: 162      agcccgtgccgtccttcagccaagatgcccgaggaaacccagacccaagaccagccgatg 221
                ||||||||  |||||||||||||||| |  ||||||||||||||||||||||||  ||||
Sbjct: 82259091 agcccgtgtggtccttcagccaagatactggaggaaacccagacccaagaccagttgatg 82259150

                                                                            
Query: 222      gaggaggaggaggtggagacgttcgccttccaggcggaaatcgcccagttgatgtcgttg 281
                || ||||      | ||||||||  |||| ||||| ||| | ||||||||||||||  ||
Sbjct: 82259151 gaagagg------ttgagacgtttccctttcaggcagaact-gcccagttgatgtcactg 82259203

                                                                            
Query: 282      atcatcaacactttctactcgaacaaggagatctttctgagggagctcatttccaactcg 341
                | ||| || ||||||||||||||  | ||  ||| ||||||| |||| ||||| || || 
Sbjct: 82259204 accat-aatactttctactcgaatcaagaactctctctgaggcagcttatttcaaattca 82259262

                                                                            
Query: 342      tccgatgctttggacaagatcagatacgaaagcctgacggatcccagtaaactagactcc 401
                |  |||||  ||||||| |   | || |||||| | |  ||||||||||||  |||||| 
Sbjct: 82259263 ttggatgcactggacaaaagaggctatgaaagcttcatagatcccagtaaatcagactct 82259322

                                             
Query: 402      gggaaagagctgcacattaatctcattcc 430
                |||||||||||||||||||||||||||||
Sbjct: 82259323 gggaaagagctgcacattaatctcattcc 82259351



 Score = 89.7 bits (45), Expect = 3e-15
 Identities = 146/177 (82%), Gaps = 7/177 (3%)
 Strand = Plus / Plus

                                                                            
Query: 708      gacacaggagaacctatgggtcgtggaacaaaggttattctacatctgaaagaagaccaa 767
                ||||||||  |||||||||||| ||| |||||||||||||| |||||| ||| |||||||
Sbjct: 82259605 gacacaggcaaacctatgggtcatggcacaaaggttattctgcatctgtaaggagaccaa 82259664

                                                                            
Query: 768      actgagtacttggaagaaaggagaataaaggagattgtgaagaaacactctcagtttatt 827
                || |||| | ||| |||||  | |||||||||||| ||||| ||||||||||| | |  |
Sbjct: 82259665 acggagt-cctgggagaaa--acaataaaggagatcgtgaaaaaacactctcaatgttct 82259721

                                                                         
Query: 828      ggctaccc----cattactctcttcgtggagaaggaacgtgataaagaagtcagtga 880
                ||||| ||    |||| |||| |  ||||||||||||  ||||||||||||||||||
Sbjct: 82259722 ggctatcccactcatttctctttatgtggagaaggaagatgataaagaagtcagtga 82259778


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 23,965,903
Number of extensions: 230
Number of successful extensions: 230
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 229
Number of HSP's successfully gapped: 7
Length of query: 1228
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1207
Effective length of database: 2,808,413,156
Effective search space: 3389754679292
Effective search space used: 3389754679292
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)