Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002190
(1228 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001012688.1| heat shock protein HSP 90-alpha [Bos taurus]. 512 e-145
Alignment gi|NP_001073105.1| heat shock protein HSP 90-beta [Bos taurus]. 454 e-128
Alignment gi|NP_777125.1| endoplasmin precursor [Bos taurus]. 216 3e-56
Alignment gi|NP_001033764.1| heat shock protein 75 kDa, mitochondrial pre... 176 5e-44
>ref|NP_001012688.1| heat shock protein HSP 90-alpha [Bos taurus].
Length = 733
Score = 512 bits (1319), Expect = e-145
Identities = 268/328 (81%), Positives = 269/328 (82%)
Frame = +3
Query: 186 MPEETQTQDQPMEEEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIR 365
MPEETQ QDQPMEEEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIR
Sbjct: 1 MPEETQAQDQPMEEEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIR 60
Query: 366 YESLTDPSKLDSGKELHINLIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFME 545
YESLTDPSKLDSGKELHINLIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFME
Sbjct: 61 YESLTDPSKLDSGKELHINLIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFME 120
Query: 546 ALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSFTVRTDTGEPM 725
ALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSFTVRTDTGEPM
Sbjct: 121 ALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSFTVRTDTGEPM 180
Query: 726 GRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPITLFVEKERXXXXXXXXXXXXXX 905
GRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPITLFVEKER
Sbjct: 181 GRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPITLFVEKERDKEVSDDEAEEKED 240
Query: 906 XXXXXXXXXXXXXXXXXXXXVGSDXXXXXXXXXXXXXXXXXXXXYIDQEELNKTKPIWTR 1085
VGSD YIDQEELNKTKPIWTR
Sbjct: 241 KEEEKEKEEKESDDKPEIEDVGSDEEEEEKKDGDKKKKKKIKEKYIDQEELNKTKPIWTR 300
Query: 1086 NPDDITNEEYGEFL*SFDHDWEDHLAVK 1169
NPDDITNEEYGEF S +DWEDHLAVK
Sbjct: 301 NPDDITNEEYGEFYKSLTNDWEDHLAVK 328
>ref|NP_001073105.1| heat shock protein HSP 90-beta [Bos taurus].
Length = 724
Score = 454 bits (1167), Expect = e-128
Identities = 243/328 (74%), Positives = 255/328 (77%)
Frame = +3
Query: 186 MPEETQTQDQPMEEEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIR 365
MPEE EEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISN+SDALDKIR
Sbjct: 1 MPEEVHHG-----EEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIR 55
Query: 366 YESLTDPSKLDSGKELHINLIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFME 545
YESLTDPSKLDSGKEL I++IPN Q+RTLT+VDTGIGMTKADL+NNLGTIAKSGTKAFME
Sbjct: 56 YESLTDPSKLDSGKELKIDIIPNPQERTLTLVDTGIGMTKADLVNNLGTIAKSGTKAFME 115
Query: 546 ALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSFTVRTDTGEPM 725
ALQAGADISMIGQFGVGFYSAYLVAEKV VITKHNDDEQYAWESSAGGSFTVR D GEP+
Sbjct: 116 ALQAGADISMIGQFGVGFYSAYLVAEKVVVITKHNDDEQYAWESSAGGSFTVRADHGEPI 175
Query: 726 GRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPITLFVEKERXXXXXXXXXXXXXX 905
GRGTKVILHLKEDQTEYLEERR+KE+VKKHSQFIGYPITL++EKER
Sbjct: 176 GRGTKVILHLKEDQTEYLEERRVKEVVKKHSQFIGYPITLYLEKER---EKEISDDEAEE 232
Query: 906 XXXXXXXXXXXXXXXXXXXXVGSDXXXXXXXXXXXXXXXXXXXXYIDQEELNKTKPIWTR 1085
VGSD YIDQEELNKTKPIWTR
Sbjct: 233 EKGEKEEEDKDDEEKPKIEDVGSD-EEDDSGKDKKKKTKKIKEKYIDQEELNKTKPIWTR 291
Query: 1086 NPDDITNEEYGEFL*SFDHDWEDHLAVK 1169
NPDDIT EEYGEF S +DWEDHLAVK
Sbjct: 292 NPDDITQEEYGEFYKSLTNDWEDHLAVK 319
>ref|NP_777125.1| endoplasmin precursor [Bos taurus].
Length = 804
Score = 216 bits (550), Expect = 3e-56
Identities = 114/215 (53%), Positives = 151/215 (70%), Gaps = 5/215 (2%)
Frame = +3
Query: 228 EEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGK 407
E+ E FAFQAE+ ++M LIIN+ Y NKEIFLRELISN+SDALDKIR SLTD + L +
Sbjct: 71 EKSEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENALAGNE 130
Query: 408 ELHINLIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFM----EALQAGADIS- 572
EL + + +K+ L + DTG+GMT+ +L+ NLGTIAKSGT F+ EA + G S
Sbjct: 131 ELTVKIKCDKEKNLLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSE 190
Query: 573 MIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSFTVRTDTGEPMGRGTKVILH 752
+IGQFGVGFYSA+LVA+KV V +KHN+D Q+ WES + + G +GRGT + L
Sbjct: 191 LIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDSNEFSVIADPRGNTLGRGTTITLV 250
Query: 753 LKEDQTEYLEERRIKEIVKKHSQFIGYPITLFVEK 857
LKE+ ++YLE IK +VKK+SQFI +PI ++ K
Sbjct: 251 LKEEASDYLELDTIKNLVKKYSQFINFPIYVWSSK 285
>ref|NP_001033764.1| heat shock protein 75 kDa, mitochondrial precursor [Bos taurus].
Length = 703
Score = 176 bits (445), Expect = 5e-44
Identities = 110/278 (39%), Positives = 164/278 (58%), Gaps = 22/278 (7%)
Frame = +3
Query: 78 RWAGPPLYKAGAGAACELLLRPGAAS---PRSPC------RPSAKMPEETQTQDQPMEE- 227
R P L A G RP A S PRS RP + E Q + P+
Sbjct: 14 RLRAPALAAACGGKPVLCPWRPPAQSWGPPRSLASSFHVGRPFSSQAAEDQAEAGPLHSV 73
Query: 228 ----EEVETFA----FQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTD 383
E V+ A FQAE +L+ ++ + YS KE+F+RELISN+SDAL+K+R++ +++
Sbjct: 74 ISSLEAVQGSATKHEFQAETKKLLDIVARSLYSEKEVFIRELISNASDALEKLRHKLVSE 133
Query: 384 PSKLDSGKELHINLIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFMEALQ--A 557
L ++ I+L + T+TI DTG+GM++ +L++NLGTIA+SG+KAF++ALQ A
Sbjct: 134 GQALP---DMEIHLQTDADRGTITIQDTGVGMSREELVSNLGTIARSGSKAFLDALQNQA 190
Query: 558 GADISMIGQFGVGFYSAYLVAEKVTVITKHNDDEQ--YAWESSAGGSFTVRTDTGEPMGR 731
A +IGQFGVGFYSA++VA++V V ++ D Y W S G F V +G +
Sbjct: 191 EAGSKIIGQFGVGFYSAFMVADRVEVYSRSVDAGSLGYRWLSDGSGVFEVAEASG--VRT 248
Query: 732 GTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPITL 845
GTK+I+HLK D E+ E R++++V K+S F+ +P+ L
Sbjct: 249 GTKIIIHLKADSREFASEARVRDVVTKYSNFVSFPLYL 286
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 38,208,598
Number of extensions: 1075369
Number of successful extensions: 4904
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 4870
Number of HSP's successfully gapped: 5
Length of query: 409
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 304
Effective length of database: 14,207,134
Effective search space: 4318968736
Effective search space used: 4318968736
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002190
(1228 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_848783.1| PREDICTED: similar to heat shock protein 1, alp... 509 e-144
Alignment gi|XP_866000.1| PREDICTED: similar to heat shock protein 1, bet... 456 e-128
Alignment gi|XP_532154.2| PREDICTED: similar to heat shock protein 1, bet... 454 e-128
Alignment gi|XP_857137.1| PREDICTED: similar to Heat shock protein HSP 90... 441 e-124
Alignment gi|XP_866031.1| PREDICTED: similar to heat shock protein 1, bet... 295 5e-80
Alignment gi|XP_868585.1| PREDICTED: similar to Heat shock protein HSP 90... 288 7e-78
Alignment gi|XP_868588.1| PREDICTED: similar to heat shock protein 1, alp... 288 1e-77
Alignment gi|XP_537557.2| PREDICTED: similar to heat shock protein 1, alp... 288 1e-77
Alignment gi|XP_865988.1| PREDICTED: similar to Heat shock protein HSP 90... 273 3e-73
Alignment gi|XP_850100.1| PREDICTED: similar to Heat shock protein HSP 90... 264 1e-70
>ref|XP_848783.1| PREDICTED: similar to heat shock protein 1, alpha isoform 1 [Canis
familiaris].
Length = 483
Score = 509 bits (1311), Expect = e-144
Identities = 266/328 (81%), Positives = 269/328 (82%)
Frame = +3
Query: 186 MPEETQTQDQPMEEEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIR 365
MPEETQTQDQPMEEEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIR
Sbjct: 1 MPEETQTQDQPMEEEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIR 60
Query: 366 YESLTDPSKLDSGKELHINLIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFME 545
YESLTDPSKLDSGKELHINLIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTK FME
Sbjct: 61 YESLTDPSKLDSGKELHINLIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKVFME 120
Query: 546 ALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSFTVRTDTGEPM 725
ALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHNDD+QYAWESSAGGSFTVRTDTGEPM
Sbjct: 121 ALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHNDDKQYAWESSAGGSFTVRTDTGEPM 180
Query: 726 GRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPITLFVEKERXXXXXXXXXXXXXX 905
GRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPITLFVEKER
Sbjct: 181 GRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPITLFVEKERDKEVSDDEAEEKEE 240
Query: 906 XXXXXXXXXXXXXXXXXXXXVGSDXXXXXXXXXXXXXXXXXXXXYIDQEELNKTKPIWTR 1085
VGSD YIDQEELNKTKPIWTR
Sbjct: 241 KEEEKEKEEKESDDKPEIEDVGSDEEEEEKKDGDKKKKKKIKEKYIDQEELNKTKPIWTR 300
Query: 1086 NPDDITNEEYGEFL*SFDHDWEDHLAVK 1169
NPD+ITNEEYGEF S +DWEDHLAVK
Sbjct: 301 NPDNITNEEYGEFYKSLTNDWEDHLAVK 328
>ref|XP_866000.1| PREDICTED: similar to heat shock protein 1, beta isoform 3 [Canis
familiaris].
Length = 324
Score = 456 bits (1172), Expect = e-128
Identities = 245/329 (74%), Positives = 256/329 (77%)
Frame = +3
Query: 186 MPEETQTQDQPMEEEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIR 365
MPEE EEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISN+SDALDKIR
Sbjct: 1 MPEEVHHG-----EEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIR 55
Query: 366 YESLTDPSKLDSGKELHINLIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFME 545
YESLTDPSKLDSGKEL I++IPN Q+RTLT+VDTGIGMTKADLINNLGTIAKSGTKAFME
Sbjct: 56 YESLTDPSKLDSGKELKIDIIPNPQERTLTLVDTGIGMTKADLINNLGTIAKSGTKAFME 115
Query: 546 ALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSFTVRTDTGEPM 725
ALQAGADISMIGQFGVGFYSAYLVAEKV VITKHNDDEQYAWESSAGGSFTVR D GEP+
Sbjct: 116 ALQAGADISMIGQFGVGFYSAYLVAEKVVVITKHNDDEQYAWESSAGGSFTVRADHGEPI 175
Query: 726 GRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPITLFVEKERXXXXXXXXXXXXXX 905
GRGTKVILHLKEDQTEYLEERR+KE+VKKHSQFIGYPITL++EKER
Sbjct: 176 GRGTKVILHLKEDQTEYLEERRVKEVVKKHSQFIGYPITLYLEKER---EKEISDDEAEE 232
Query: 906 XXXXXXXXXXXXXXXXXXXXVGSDXXXXXXXXXXXXXXXXXXXXYIDQEELNKTKPIWTR 1085
VGSD YIDQEELNKTKPIWTR
Sbjct: 233 EKGEKEEEDKDDEEKPKIEDVGSD-EEDDSGKDKKKKTKKIKEKYIDQEELNKTKPIWTR 291
Query: 1086 NPDDITNEEYGEFL*SFDHDWEDHLAVKV 1172
NPDDIT EEYGEF S +DWEDHLAVKV
Sbjct: 292 NPDDITQEEYGEFYKSLTNDWEDHLAVKV 320
>ref|XP_532154.2| PREDICTED: similar to heat shock protein 1, beta isoform 1 [Canis
familiaris].
Length = 636
Score = 454 bits (1168), Expect = e-128
Identities = 244/328 (74%), Positives = 255/328 (77%)
Frame = +3
Query: 186 MPEETQTQDQPMEEEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIR 365
MPEE EEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISN+SDALDKIR
Sbjct: 1 MPEEVHHG-----EEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIR 55
Query: 366 YESLTDPSKLDSGKELHINLIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFME 545
YESLTDPSKLDSGKEL I++IPN Q+RTLT+VDTGIGMTKADLINNLGTIAKSGTKAFME
Sbjct: 56 YESLTDPSKLDSGKELKIDIIPNPQERTLTLVDTGIGMTKADLINNLGTIAKSGTKAFME 115
Query: 546 ALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSFTVRTDTGEPM 725
ALQAGADISMIGQFGVGFYSAYLVAEKV VITKHNDDEQYAWESSAGGSFTVR D GEP+
Sbjct: 116 ALQAGADISMIGQFGVGFYSAYLVAEKVVVITKHNDDEQYAWESSAGGSFTVRADHGEPI 175
Query: 726 GRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPITLFVEKERXXXXXXXXXXXXXX 905
GRGTKVILHLKEDQTEYLEERR+KE+VKKHSQFIGYPITL++EKER
Sbjct: 176 GRGTKVILHLKEDQTEYLEERRVKEVVKKHSQFIGYPITLYLEKER---EKEISDDEAEE 232
Query: 906 XXXXXXXXXXXXXXXXXXXXVGSDXXXXXXXXXXXXXXXXXXXXYIDQEELNKTKPIWTR 1085
VGSD YIDQEELNKTKPIWTR
Sbjct: 233 EKGEKEEEDKDDEEKPKIEDVGSD-EEDDSGKDKKKKTKKIKEKYIDQEELNKTKPIWTR 291
Query: 1086 NPDDITNEEYGEFL*SFDHDWEDHLAVK 1169
NPDDIT EEYGEF S +DWEDHLAVK
Sbjct: 292 NPDDITQEEYGEFYKSLTNDWEDHLAVK 319
>ref|XP_857137.1| PREDICTED: similar to Heat shock protein HSP 90-alpha (HSP 86)
isoform 3 [Canis familiaris].
Length = 543
Score = 441 bits (1135), Expect = e-124
Identities = 224/226 (99%), Positives = 225/226 (99%)
Frame = +3
Query: 186 MPEETQTQDQPMEEEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIR 365
MPEETQTQDQPMEEEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIR
Sbjct: 1 MPEETQTQDQPMEEEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIR 60
Query: 366 YESLTDPSKLDSGKELHINLIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFME 545
YESLTDPSKLDSGKELHINLIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTK FME
Sbjct: 61 YESLTDPSKLDSGKELHINLIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKVFME 120
Query: 546 ALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSFTVRTDTGEPM 725
ALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHNDD+QYAWESSAGGSFTVRTDTGEPM
Sbjct: 121 ALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHNDDKQYAWESSAGGSFTVRTDTGEPM 180
Query: 726 GRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPITLFVEKER 863
GRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPITLFVEKER
Sbjct: 181 GRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPITLFVEKER 226
>ref|XP_866031.1| PREDICTED: similar to heat shock protein 1, beta isoform 5 [Canis
familiaris].
Length = 480
Score = 295 bits (756), Expect = 5e-80
Identities = 154/171 (90%), Positives = 159/171 (92%)
Frame = +3
Query: 186 MPEETQTQDQPMEEEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIR 365
MPEE EEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISN+SDALDKIR
Sbjct: 1 MPEEVHHG-----EEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIR 55
Query: 366 YESLTDPSKLDSGKELHINLIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFME 545
YESLTDPSKLDSGKEL I++IPN Q+RTLT+VDTGIGMTKADLINNLGTIAKSGTKAFME
Sbjct: 56 YESLTDPSKLDSGKELKIDIIPNPQERTLTLVDTGIGMTKADLINNLGTIAKSGTKAFME 115
Query: 546 ALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSFT 698
ALQAGADISMIGQFGVGFYSAYLVAEKV VITKHNDDEQYAWESSAGGSFT
Sbjct: 116 ALQAGADISMIGQFGVGFYSAYLVAEKVVVITKHNDDEQYAWESSAGGSFT 166
>ref|XP_868585.1| PREDICTED: similar to Heat shock protein HSP 90-alpha (HSP 86)
isoform 2 [Canis familiaris].
Length = 469
Score = 288 bits (737), Expect = 7e-78
Identities = 151/211 (71%), Positives = 153/211 (72%)
Frame = +3
Query: 540 MEALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSFTVRTDTGE 719
MEALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSFTVRTDTGE
Sbjct: 1 MEALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSFTVRTDTGE 60
Query: 720 PMGRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPITLFVEKERXXXXXXXXXXXX 899
PMGRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPITLFVEKER
Sbjct: 61 PMGRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPITLFVEKERDKEVSDDEAEEK 120
Query: 900 XXXXXXXXXXXXXXXXXXXXXXVGSDXXXXXXXXXXXXXXXXXXXXYIDQEELNKTKPIW 1079
VGSD YIDQEELNKTKPIW
Sbjct: 121 EEKEEEKEKKEKESDDKPEIEDVGSDEEEEEKKDGDKKKKKKIKEKYIDQEELNKTKPIW 180
Query: 1080 TRNPDDITNEEYGEFL*SFDHDWEDHLAVKV 1172
TRNPDDITNEEYGEF S +DWEDHLAVK+
Sbjct: 181 TRNPDDITNEEYGEFYKSLTNDWEDHLAVKM 211
>ref|XP_868588.1| PREDICTED: similar to heat shock protein 1, alpha isoform 3 [Canis
familiaris].
Length = 607
Score = 288 bits (736), Expect = 1e-77
Identities = 151/210 (71%), Positives = 152/210 (72%)
Frame = +3
Query: 540 MEALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSFTVRTDTGE 719
MEALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSFTVRTDTGE
Sbjct: 1 MEALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSFTVRTDTGE 60
Query: 720 PMGRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPITLFVEKERXXXXXXXXXXXX 899
PMGRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPITLFVEKER
Sbjct: 61 PMGRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPITLFVEKERDKEVSDDEAEEK 120
Query: 900 XXXXXXXXXXXXXXXXXXXXXXVGSDXXXXXXXXXXXXXXXXXXXXYIDQEELNKTKPIW 1079
VGSD YIDQEELNKTKPIW
Sbjct: 121 EEKEEEKEKKEKESDDKPEIEDVGSDEEEEEKKDGDKKKKKKIKEKYIDQEELNKTKPIW 180
Query: 1080 TRNPDDITNEEYGEFL*SFDHDWEDHLAVK 1169
TRNPDDITNEEYGEF S +DWEDHLAVK
Sbjct: 181 TRNPDDITNEEYGEFYKSLTNDWEDHLAVK 210
>ref|XP_537557.2| PREDICTED: similar to heat shock protein 1, alpha isoform 1 [Canis
familiaris].
Length = 615
Score = 288 bits (736), Expect = 1e-77
Identities = 151/210 (71%), Positives = 152/210 (72%)
Frame = +3
Query: 540 MEALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSFTVRTDTGE 719
MEALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSFTVRTDTGE
Sbjct: 1 MEALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSFTVRTDTGE 60
Query: 720 PMGRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPITLFVEKERXXXXXXXXXXXX 899
PMGRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPITLFVEKER
Sbjct: 61 PMGRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPITLFVEKERDKEVSDDEAEEK 120
Query: 900 XXXXXXXXXXXXXXXXXXXXXXVGSDXXXXXXXXXXXXXXXXXXXXYIDQEELNKTKPIW 1079
VGSD YIDQEELNKTKPIW
Sbjct: 121 EEKEEEKEKKEKESDDKPEIEDVGSDEEEEEKKDGDKKKKKKIKEKYIDQEELNKTKPIW 180
Query: 1080 TRNPDDITNEEYGEFL*SFDHDWEDHLAVK 1169
TRNPDDITNEEYGEF S +DWEDHLAVK
Sbjct: 181 TRNPDDITNEEYGEFYKSLTNDWEDHLAVK 210
>ref|XP_865988.1| PREDICTED: similar to Heat shock protein HSP 90-beta (HSP 84)
(Tumor specific transplantation 84 kDa antigen) (TSTA)
isoform 2 [Canis familiaris].
Length = 183
Score = 273 bits (697), Expect = 3e-73
Identities = 147/176 (83%), Positives = 157/176 (89%), Gaps = 2/176 (1%)
Frame = +3
Query: 186 MPEETQTQDQPMEEEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIR 365
MPEE EEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISN+SDALDKIR
Sbjct: 1 MPEEVHHG-----EEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIR 55
Query: 366 YESLTDPSKLDSGKELHINLIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFME 545
YESLTDPSKLDSGKEL I++IPN Q+RTLT+VDTGIGMTKADLINNLGTIAKSGTKAFME
Sbjct: 56 YESLTDPSKLDSGKELKIDIIPNPQERTLTLVDTGIGMTKADLINNLGTIAKSGTKAFME 115
Query: 546 ALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHNDDEQ--YAWESSAGGSFTVRT 707
ALQAGADISMIGQFGVGFYSAYLVAEKV VITKHNDDEQ AW+ S +F+++T
Sbjct: 116 ALQAGADISMIGQFGVGFYSAYLVAEKVVVITKHNDDEQMPLAWKKSI--NFSLQT 169
>ref|XP_850100.1| PREDICTED: similar to Heat shock protein HSP 90-beta (HSP 84)
[Canis familiaris].
Length = 298
Score = 264 bits (674), Expect = 1e-70
Identities = 147/226 (65%), Positives = 158/226 (69%)
Frame = +3
Query: 183 KMPEETQTQDQPMEEEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKI 362
+MPEE EE+VETFAFQAE AQLMSLI NTF SNKEIFLRELISN+SDALDKI
Sbjct: 126 QMPEEVHHG-----EEKVETFAFQAETAQLMSLIFNTFSSNKEIFLRELISNASDALDKI 180
Query: 363 RYESLTDPSKLDSGKELHINLIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFM 542
RYESLTD SKLDSGKEL I
Sbjct: 181 RYESLTDFSKLDSGKELKI----------------------------------------- 199
Query: 543 EALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSFTVRTDTGEP 722
DISMIGQFGVGFYSAYLVAEKV VITKHNDDEQYAWES AGGSFTVR D GEP
Sbjct: 200 -------DISMIGQFGVGFYSAYLVAEKVVVITKHNDDEQYAWESPAGGSFTVRADHGEP 252
Query: 723 MGRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPITLFVEKE 860
+G+GTK+ILHLKEDQTEYLEE +KE+VKKHS+FIGYPITL++EKE
Sbjct: 253 IGQGTKMILHLKEDQTEYLEETHVKEVVKKHSKFIGYPITLYLEKE 298
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 39,754,143
Number of extensions: 1049728
Number of successful extensions: 5381
Number of sequences better than 1.0e-05: 18
Number of HSP's gapped: 5355
Number of HSP's successfully gapped: 26
Length of query: 409
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 304
Effective length of database: 15,374,224
Effective search space: 4673764096
Effective search space used: 4673764096
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002190
(1228 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_005339.3| heat shock protein HSP 90-alpha isoform 2 [Homo... 510 e-144
Alignment gi|NP_001017963.2| heat shock protein HSP 90-alpha isoform 1 [H... 510 e-144
Alignment gi|NP_031381.2| heat shock protein HSP 90-beta [Homo sapiens]. 454 e-128
Alignment gi|NP_003290.1| endoplasmin precursor [Homo sapiens]. 217 2e-56
Alignment gi|NP_057376.2| heat shock protein 75 kDa, mitochondrial precur... 177 2e-44
>ref|NP_005339.3| heat shock protein HSP 90-alpha isoform 2 [Homo sapiens].
Length = 732
Score = 510 bits (1313), Expect = e-144
Identities = 269/328 (82%), Positives = 270/328 (82%)
Frame = +3
Query: 186 MPEETQTQDQPMEEEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIR 365
MPEETQTQDQPMEEEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIR
Sbjct: 1 MPEETQTQDQPMEEEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIR 60
Query: 366 YESLTDPSKLDSGKELHINLIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFME 545
YESLTDPSKLDSGKELHINLIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFME
Sbjct: 61 YESLTDPSKLDSGKELHINLIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFME 120
Query: 546 ALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSFTVRTDTGEPM 725
ALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSFTVRTDTGEPM
Sbjct: 121 ALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSFTVRTDTGEPM 180
Query: 726 GRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPITLFVEKERXXXXXXXXXXXXXX 905
GRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPITLFVEKER
Sbjct: 181 GRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPITLFVEKERDKEVSDDEAEEKED 240
Query: 906 XXXXXXXXXXXXXXXXXXXXVGSDXXXXXXXXXXXXXXXXXXXXYIDQEELNKTKPIWTR 1085
VGSD YIDQEELNKTKPIWTR
Sbjct: 241 KEEEKEKEEKESEDKPEIEDVGSD-EEEEKKDGDKKKKKKIKEKYIDQEELNKTKPIWTR 299
Query: 1086 NPDDITNEEYGEFL*SFDHDWEDHLAVK 1169
NPDDITNEEYGEF S +DWEDHLAVK
Sbjct: 300 NPDDITNEEYGEFYKSLTNDWEDHLAVK 327
>ref|NP_001017963.2| heat shock protein HSP 90-alpha isoform 1 [Homo sapiens].
Length = 854
Score = 510 bits (1313), Expect = e-144
Identities = 269/328 (82%), Positives = 270/328 (82%)
Frame = +3
Query: 186 MPEETQTQDQPMEEEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIR 365
MPEETQTQDQPMEEEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIR
Sbjct: 123 MPEETQTQDQPMEEEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIR 182
Query: 366 YESLTDPSKLDSGKELHINLIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFME 545
YESLTDPSKLDSGKELHINLIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFME
Sbjct: 183 YESLTDPSKLDSGKELHINLIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFME 242
Query: 546 ALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSFTVRTDTGEPM 725
ALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSFTVRTDTGEPM
Sbjct: 243 ALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSFTVRTDTGEPM 302
Query: 726 GRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPITLFVEKERXXXXXXXXXXXXXX 905
GRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPITLFVEKER
Sbjct: 303 GRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPITLFVEKERDKEVSDDEAEEKED 362
Query: 906 XXXXXXXXXXXXXXXXXXXXVGSDXXXXXXXXXXXXXXXXXXXXYIDQEELNKTKPIWTR 1085
VGSD YIDQEELNKTKPIWTR
Sbjct: 363 KEEEKEKEEKESEDKPEIEDVGSD-EEEEKKDGDKKKKKKIKEKYIDQEELNKTKPIWTR 421
Query: 1086 NPDDITNEEYGEFL*SFDHDWEDHLAVK 1169
NPDDITNEEYGEF S +DWEDHLAVK
Sbjct: 422 NPDDITNEEYGEFYKSLTNDWEDHLAVK 449
>ref|NP_031381.2| heat shock protein HSP 90-beta [Homo sapiens].
Length = 724
Score = 454 bits (1168), Expect = e-128
Identities = 244/328 (74%), Positives = 255/328 (77%)
Frame = +3
Query: 186 MPEETQTQDQPMEEEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIR 365
MPEE EEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISN+SDALDKIR
Sbjct: 1 MPEEVHHG-----EEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIR 55
Query: 366 YESLTDPSKLDSGKELHINLIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFME 545
YESLTDPSKLDSGKEL I++IPN Q+RTLT+VDTGIGMTKADLINNLGTIAKSGTKAFME
Sbjct: 56 YESLTDPSKLDSGKELKIDIIPNPQERTLTLVDTGIGMTKADLINNLGTIAKSGTKAFME 115
Query: 546 ALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSFTVRTDTGEPM 725
ALQAGADISMIGQFGVGFYSAYLVAEKV VITKHNDDEQYAWESSAGGSFTVR D GEP+
Sbjct: 116 ALQAGADISMIGQFGVGFYSAYLVAEKVVVITKHNDDEQYAWESSAGGSFTVRADHGEPI 175
Query: 726 GRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPITLFVEKERXXXXXXXXXXXXXX 905
GRGTKVILHLKEDQTEYLEERR+KE+VKKHSQFIGYPITL++EKER
Sbjct: 176 GRGTKVILHLKEDQTEYLEERRVKEVVKKHSQFIGYPITLYLEKER---EKEISDDEAEE 232
Query: 906 XXXXXXXXXXXXXXXXXXXXVGSDXXXXXXXXXXXXXXXXXXXXYIDQEELNKTKPIWTR 1085
VGSD YIDQEELNKTKPIWTR
Sbjct: 233 EKGEKEEEDKDDEEKPKIEDVGSD-EEDDSGKDKKKKTKKIKEKYIDQEELNKTKPIWTR 291
Query: 1086 NPDDITNEEYGEFL*SFDHDWEDHLAVK 1169
NPDDIT EEYGEF S +DWEDHLAVK
Sbjct: 292 NPDDITQEEYGEFYKSLTNDWEDHLAVK 319
>ref|NP_003290.1| endoplasmin precursor [Homo sapiens].
Length = 803
Score = 217 bits (552), Expect = 2e-56
Identities = 114/215 (53%), Positives = 151/215 (70%), Gaps = 5/215 (2%)
Frame = +3
Query: 228 EEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGK 407
E+ E FAFQAE+ ++M LIIN+ Y NKEIFLRELISN+SDALDKIR SLTD + L +
Sbjct: 71 EKSEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENALSGNE 130
Query: 408 ELHINLIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFM----EALQAGADIS- 572
EL + + +K+ L + DTG+GMT+ +L+ NLGTIAKSGT F+ EA + G S
Sbjct: 131 ELTVKIKCDKEKNLLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSE 190
Query: 573 MIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSFTVRTDTGEPMGRGTKVILH 752
+IGQFGVGFYSA+LVA+KV V +KHN+D Q+ WES + + G +GRGT + L
Sbjct: 191 LIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDSNEFSVIADPRGNTLGRGTTITLV 250
Query: 753 LKEDQTEYLEERRIKEIVKKHSQFIGYPITLFVEK 857
LKE+ ++YLE IK +VKK+SQFI +PI ++ K
Sbjct: 251 LKEEASDYLELDTIKNLVKKYSQFINFPIYVWSSK 285
>ref|NP_057376.2| heat shock protein 75 kDa, mitochondrial precursor [Homo sapiens].
Length = 704
Score = 177 bits (449), Expect = 2e-44
Identities = 93/203 (45%), Positives = 141/203 (69%), Gaps = 4/203 (1%)
Frame = +3
Query: 249 FQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLI 428
FQAE +L+ ++ + YS KE+F+RELISN+SDAL+K+R++ ++D L E+ I+L
Sbjct: 90 FQAETKKLLDIVARSLYSEKEVFIRELISNASDALEKLRHKLVSDGQALP---EMEIHLQ 146
Query: 429 PNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADIS--MIGQFGVGFY 602
N + T+TI DTGIGMT+ +L++NLGTIA+SG+KAF++ALQ A+ S +IGQFGVGFY
Sbjct: 147 TNAEKGTITIQDTGIGMTQEELVSNLGTIARSGSKAFLDALQNQAEASSKIIGQFGVGFY 206
Query: 603 SAYLVAEKVTVITKHNDDEQ--YAWESSAGGSFTVRTDTGEPMGRGTKVILHLKEDQTEY 776
SA++VA++V V ++ Y W S G F + +G + GTK+I+HLK D E+
Sbjct: 207 SAFMVADRVEVYSRSAAPGSLGYQWLSDGSGVFEIAEASG--VRTGTKIIIHLKSDCKEF 264
Query: 777 LEERRIKEIVKKHSQFIGYPITL 845
E R++++V K+S F+ +P+ L
Sbjct: 265 SSEARVRDVVTKYSNFVSFPLYL 287
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 38,762,904
Number of extensions: 1014262
Number of successful extensions: 5040
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 5011
Number of HSP's successfully gapped: 8
Length of query: 409
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 304
Effective length of database: 14,835,944
Effective search space: 4510126976
Effective search space used: 4510126976
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002190
(1228 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_034610.1| heat shock protein HSP 90-alpha [Mus musculus]. 511 e-145
Alignment gi|NP_032328.2| heat shock protein HSP 90-beta [Mus musculus]. 454 e-128
Alignment gi|NP_035761.1| endoplasmin [Mus musculus]. 215 6e-56
Alignment gi|NP_080784.1| heat shock protein 75 kDa, mitochondrial precur... 176 3e-44
>ref|NP_034610.1| heat shock protein HSP 90-alpha [Mus musculus].
Length = 733
Score = 511 bits (1315), Expect = e-145
Identities = 267/328 (81%), Positives = 270/328 (82%)
Frame = +3
Query: 186 MPEETQTQDQPMEEEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIR 365
MPEETQTQDQPMEEEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIR
Sbjct: 1 MPEETQTQDQPMEEEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIR 60
Query: 366 YESLTDPSKLDSGKELHINLIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFME 545
YESLTDPSKLDSGKELHINLIP+KQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFME
Sbjct: 61 YESLTDPSKLDSGKELHINLIPSKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFME 120
Query: 546 ALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSFTVRTDTGEPM 725
ALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSFTVRTDTGEPM
Sbjct: 121 ALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSFTVRTDTGEPM 180
Query: 726 GRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPITLFVEKERXXXXXXXXXXXXXX 905
GRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPITLFVEKER
Sbjct: 181 GRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPITLFVEKERDKEVSDDEAEEKEE 240
Query: 906 XXXXXXXXXXXXXXXXXXXXVGSDXXXXXXXXXXXXXXXXXXXXYIDQEELNKTKPIWTR 1085
VGSD YIDQEELNKTKPIWTR
Sbjct: 241 KEEEKEKEEKESDDKPEIEDVGSDEEEEEKKDGDKKKKKKIKEKYIDQEELNKTKPIWTR 300
Query: 1086 NPDDITNEEYGEFL*SFDHDWEDHLAVK 1169
NPDDITNEEYGEF S +DWE+HLAVK
Sbjct: 301 NPDDITNEEYGEFYKSLTNDWEEHLAVK 328
>ref|NP_032328.2| heat shock protein HSP 90-beta [Mus musculus].
Length = 724
Score = 454 bits (1168), Expect = e-128
Identities = 244/328 (74%), Positives = 255/328 (77%)
Frame = +3
Query: 186 MPEETQTQDQPMEEEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIR 365
MPEE EEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISN+SDALDKIR
Sbjct: 1 MPEEVHHG-----EEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIR 55
Query: 366 YESLTDPSKLDSGKELHINLIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFME 545
YESLTDPSKLDSGKEL I++IPN Q+RTLT+VDTGIGMTKADLINNLGTIAKSGTKAFME
Sbjct: 56 YESLTDPSKLDSGKELKIDIIPNPQERTLTLVDTGIGMTKADLINNLGTIAKSGTKAFME 115
Query: 546 ALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSFTVRTDTGEPM 725
ALQAGADISMIGQFGVGFYSAYLVAEKV VITKHNDDEQYAWESSAGGSFTVR D GEP+
Sbjct: 116 ALQAGADISMIGQFGVGFYSAYLVAEKVVVITKHNDDEQYAWESSAGGSFTVRADHGEPI 175
Query: 726 GRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPITLFVEKERXXXXXXXXXXXXXX 905
GRGTKVILHLKEDQTEYLEERR+KE+VKKHSQFIGYPITL++EKER
Sbjct: 176 GRGTKVILHLKEDQTEYLEERRVKEVVKKHSQFIGYPITLYLEKER---EKEISDDEAEE 232
Query: 906 XXXXXXXXXXXXXXXXXXXXVGSDXXXXXXXXXXXXXXXXXXXXYIDQEELNKTKPIWTR 1085
VGSD YIDQEELNKTKPIWTR
Sbjct: 233 EKGEKEEEDKEDEEKPKIEDVGSD-EEDDSGKDKKKKTKKIKEKYIDQEELNKTKPIWTR 291
Query: 1086 NPDDITNEEYGEFL*SFDHDWEDHLAVK 1169
NPDDIT EEYGEF S +DWEDHLAVK
Sbjct: 292 NPDDITQEEYGEFYKSLTNDWEDHLAVK 319
>ref|NP_035761.1| endoplasmin [Mus musculus].
Length = 802
Score = 215 bits (547), Expect = 6e-56
Identities = 113/215 (52%), Positives = 151/215 (70%), Gaps = 5/215 (2%)
Frame = +3
Query: 228 EEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGK 407
E+ E FAFQAE+ ++M LIIN+ Y NKEIFLRELISN+SDALDKIR SLTD + L +
Sbjct: 71 EKSEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENALAGNE 130
Query: 408 ELHINLIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFM----EALQAGADIS- 572
EL + + +K+ L + DTG+GMT+ +L+ NLGTIAKSGT F+ EA + G S
Sbjct: 131 ELTVKIKCDKEKNLLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSE 190
Query: 573 MIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSFTVRTDTGEPMGRGTKVILH 752
+IGQFGVGFYSA+LVA+KV V +KHN+D Q+ WES + + G +GRGT + L
Sbjct: 191 LIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDSNEFSVIADPRGNTLGRGTTITLV 250
Query: 753 LKEDQTEYLEERRIKEIVKKHSQFIGYPITLFVEK 857
LKE+ ++YLE IK +V+K+SQFI +PI ++ K
Sbjct: 251 LKEEASDYLELDTIKNLVRKYSQFINFPIYVWSSK 285
>ref|NP_080784.1| heat shock protein 75 kDa, mitochondrial precursor [Mus musculus].
Length = 706
Score = 176 bits (446), Expect = 3e-44
Identities = 94/208 (45%), Positives = 142/208 (68%), Gaps = 4/208 (1%)
Frame = +3
Query: 234 VETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGKEL 413
V FQAE +L+ ++ + YS KE+F+RELISN+SDAL+K+R++ + + L E+
Sbjct: 87 VSKHEFQAETKKLLDIVARSLYSEKEVFIRELISNASDALEKLRHKLVCEGQVLP---EM 143
Query: 414 HINLIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADIS--MIGQF 587
I+L + + T+TI DTGIGMT+ +L++NLGTIA+SG+KAF+EALQ A+ S +IGQF
Sbjct: 144 EIHLQTDAKKGTITIQDTGIGMTQEELVSNLGTIARSGSKAFLEALQNQAETSSKIIGQF 203
Query: 588 GVGFYSAYLVAEKVTVITKHNDDEQ--YAWESSAGGSFTVRTDTGEPMGRGTKVILHLKE 761
GVGFYSA++VA+KV V ++ E Y W S G F + +G + GTK+I+HLK
Sbjct: 204 GVGFYSAFMVADKVEVYSRSAAPESPGYQWLSDGSGVFEIAEASG--VRPGTKIIIHLKS 261
Query: 762 DQTEYLEERRIKEIVKKHSQFIGYPITL 845
D ++ E R++++V K+S F+ +P+ L
Sbjct: 262 DCKDFASESRVQDVVTKYSNFVSFPLYL 289
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 32,694,770
Number of extensions: 842018
Number of successful extensions: 4158
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 4134
Number of HSP's successfully gapped: 5
Length of query: 409
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 305
Effective length of database: 12,493,815
Effective search space: 3810613575
Effective search space used: 3810613575
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002190
(1228 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_999138.1| heat shock protein HSP 90-alpha [Sus scrofa]. 514 e-146
Alignment gi|XP_001929605.1| PREDICTED: heat shock protein HSP 90-beta is... 454 e-128
Alignment gi|NP_999268.1| endoplasmin precursor [Sus scrofa]. 216 2e-56
Alignment gi|NP_001230874.1| TNF receptor-associated protein 1 [Sus scrof... 177 1e-44
>ref|NP_999138.1| heat shock protein HSP 90-alpha [Sus scrofa].
Length = 733
Score = 514 bits (1324), Expect = e-146
Identities = 269/328 (82%), Positives = 270/328 (82%)
Frame = +3
Query: 186 MPEETQTQDQPMEEEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIR 365
MPEETQTQDQPMEEEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIR
Sbjct: 1 MPEETQTQDQPMEEEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIR 60
Query: 366 YESLTDPSKLDSGKELHINLIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFME 545
YESLTDPSKLDSGKELHINLIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFME
Sbjct: 61 YESLTDPSKLDSGKELHINLIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFME 120
Query: 546 ALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSFTVRTDTGEPM 725
ALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSFTVRTDTGEPM
Sbjct: 121 ALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSFTVRTDTGEPM 180
Query: 726 GRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPITLFVEKERXXXXXXXXXXXXXX 905
GRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPITLFVEKER
Sbjct: 181 GRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPITLFVEKERDKEVSDDEAEEKED 240
Query: 906 XXXXXXXXXXXXXXXXXXXXVGSDXXXXXXXXXXXXXXXXXXXXYIDQEELNKTKPIWTR 1085
VGSD YIDQEELNKTKPIWTR
Sbjct: 241 KEEEKEKEEKESEDKPEIEDVGSDEEEEEKKDGDKKKKKKIKEKYIDQEELNKTKPIWTR 300
Query: 1086 NPDDITNEEYGEFL*SFDHDWEDHLAVK 1169
NPDDITNEEYGEF S +DWEDHLAVK
Sbjct: 301 NPDDITNEEYGEFYKSLTNDWEDHLAVK 328
>ref|XP_001929605.1| PREDICTED: heat shock protein HSP 90-beta isoform 1 [Sus scrofa].
Length = 724
Score = 454 bits (1168), Expect = e-128
Identities = 244/328 (74%), Positives = 255/328 (77%)
Frame = +3
Query: 186 MPEETQTQDQPMEEEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIR 365
MPEE EEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISN+SDALDKIR
Sbjct: 1 MPEEVHHG-----EEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIR 55
Query: 366 YESLTDPSKLDSGKELHINLIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFME 545
YESLTDPSKLDSGKEL I++IPN Q+RTLT+VDTGIGMTKADLINNLGTIAKSGTKAFME
Sbjct: 56 YESLTDPSKLDSGKELKIDIIPNPQERTLTLVDTGIGMTKADLINNLGTIAKSGTKAFME 115
Query: 546 ALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSFTVRTDTGEPM 725
ALQAGADISMIGQFGVGFYSAYLVAEKV VITKHNDDEQYAWESSAGGSFTVR D GEP+
Sbjct: 116 ALQAGADISMIGQFGVGFYSAYLVAEKVVVITKHNDDEQYAWESSAGGSFTVRADHGEPI 175
Query: 726 GRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPITLFVEKERXXXXXXXXXXXXXX 905
GRGTKVILHLKEDQTEYLEERR+KE+VKKHSQFIGYPITL++EKER
Sbjct: 176 GRGTKVILHLKEDQTEYLEERRVKEVVKKHSQFIGYPITLYLEKER---EKEISDDEAEE 232
Query: 906 XXXXXXXXXXXXXXXXXXXXVGSDXXXXXXXXXXXXXXXXXXXXYIDQEELNKTKPIWTR 1085
VGSD YIDQEELNKTKPIWTR
Sbjct: 233 EKGDKEEEDKDDEEKPKIEDVGSD-EEDDSGKDKKKKTKKIKEKYIDQEELNKTKPIWTR 291
Query: 1086 NPDDITNEEYGEFL*SFDHDWEDHLAVK 1169
NPDDIT EEYGEF S +DWEDHLAVK
Sbjct: 292 NPDDITQEEYGEFYKSLTNDWEDHLAVK 319
>ref|NP_999268.1| endoplasmin precursor [Sus scrofa].
Length = 804
Score = 216 bits (550), Expect = 2e-56
Identities = 114/215 (53%), Positives = 151/215 (70%), Gaps = 5/215 (2%)
Frame = +3
Query: 228 EEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGK 407
E+ E FAFQAE+ ++M LIIN+ Y NKEIFLRELISN+SDALDKIR SLTD + L +
Sbjct: 71 EKSEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENALAGNE 130
Query: 408 ELHINLIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFM----EALQAGADIS- 572
EL + + +K+ L + DTG+GMT+ +L+ NLGTIAKSGT F+ EA + G S
Sbjct: 131 ELTVKIKCDKEKNLLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSE 190
Query: 573 MIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSFTVRTDTGEPMGRGTKVILH 752
+IGQFGVGFYSA+LVA+KV V +KHN+D Q+ WES + + G +GRGT + L
Sbjct: 191 LIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDSNEFSVIADPRGNTLGRGTTITLV 250
Query: 753 LKEDQTEYLEERRIKEIVKKHSQFIGYPITLFVEK 857
LKE+ ++YLE IK +VKK+SQFI +PI ++ K
Sbjct: 251 LKEEASDYLELDTIKNLVKKYSQFINFPIYVWSSK 285
>ref|NP_001230874.1| TNF receptor-associated protein 1 [Sus scrofa].
Length = 702
Score = 177 bits (448), Expect = 1e-44
Identities = 95/237 (40%), Positives = 151/237 (63%), Gaps = 12/237 (5%)
Frame = +3
Query: 171 RPSAKMPEETQTQDQP--------MEEEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRE 326
RP + E + ++ P + V FQAE +L+ ++ + YS KE+F+RE
Sbjct: 54 RPFSSQAAEDRKEEPPHCIISSSETVQGSVSKHEFQAETKKLLDIVARSLYSEKEVFIRE 113
Query: 327 LISNSSDALDKIRYESLTDPSKLDSGKELHINLIPNKQDRTLTIVDTGIGMTKADLINNL 506
LISN+SDAL+++R++ +++ L E+ I+L + + T+TI DTG+GMT+ +L++NL
Sbjct: 114 LISNASDALERLRHKLVSEGQTLP---EMEIHLQTDSEKGTITIQDTGVGMTREELVSNL 170
Query: 507 GTIAKSGTKAFMEALQAGADIS--MIGQFGVGFYSAYLVAEKVTVITKHND--DEQYAWE 674
GTIA+SG+KAF++ALQ A+ S +IGQFGVGFYSA++VA+KV V ++ D + W
Sbjct: 171 GTIARSGSKAFLDALQNQAEASGKIIGQFGVGFYSAFMVADKVEVYSRSVDAGSPGFQWL 230
Query: 675 SSAGGSFTVRTDTGEPMGRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPITL 845
S G F + G + GTK+I+HLK D E+ E R++++V K+S F+ +P+ L
Sbjct: 231 SDGSGVFEIAEAAG--VRTGTKIIIHLKADSREFAHEARVRDVVTKYSNFVSFPLYL 285
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 25,310,517
Number of extensions: 789792
Number of successful extensions: 3338
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 3304
Number of HSP's successfully gapped: 5
Length of query: 409
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 308
Effective length of database: 8,829,335
Effective search space: 2719435180
Effective search space used: 2719435180
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002190
(1228 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr07 309 2e-81
Sscrofa_Chr02 92 9e-16
>Sscrofa_Chr07
|| Length = 134764511
Score = 309 bits (156), Expect = 2e-81
Identities = 159/160 (99%)
Strand = Plus / Plus
Query: 26 ttggggagggttcttccggaaggttcgggaggcttctggaaaaggcgccgcgcgctgggc 85
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129758411 ttggggagggttcttccggaaggttcgggaggcttctggaaaaggcgccgcgcgctgggc 129758470
Query: 86 gggcccgcctctatataaggcaggcgcgggggcggcgtgcgagttgcttctgcgtcctgg 145
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 129758471 gggcccgcctctatataaggcaggcgcgggggcggcgtgccagttgcttctgcgtcctgg 129758530
Query: 146 tgctgcgtcgccgcggagcccgtgccgtccttcagccaag 185
||||||||||||||||||||||||||||||||||||||||
Sbjct: 129758531 tgctgcgtcgccgcggagcccgtgccgtccttcagccaag 129758570
Score = 99.6 bits (50), Expect = 4e-18
Identities = 110/130 (84%)
Strand = Plus / Plus
Query: 553 aggccggtgccgatatctcgatgattggccagttcggtgtcggcttctactctgcgtacc 612
|||| ||||| || ||||| |||||||| ||||| ||||| |||||||| ||||| ||||
Sbjct: 45115598 aggctggtgcagacatctccatgattggacagtttggtgttggcttctattctgcctacc 45115657
Query: 613 tggtcgctgagaaagtgaccgttatcaccaaacacaacgatgacgagcagtatgcctggg 672
|||| || ||||||||| || ||||| || ||||| ||||| || |||||||||||||
Sbjct: 45115658 tggtggcagagaaagtggttgtgatcacaaagcacaatgatgatgaacagtatgcctggg 45115717
Query: 673 agtcttctgc 682
||||||||||
Sbjct: 45115718 agtcttctgc 45115727
Score = 69.9 bits (35), Expect = 3e-09
Identities = 80/95 (84%)
Strand = Plus / Plus
Query: 225 gaggaggaggtggagacgttcgccttccaggcggaaatcgcccagttgatgtcgttgatc 284
|||||||| |||||||| || ||||||||||| |||||||||||| | ||||| | |||
Sbjct: 45114878 gaggaggaagtggagacttttgccttccaggcagaaatcgcccagctcatgtctctcatc 45114937
Query: 285 atcaacactttctactcgaacaaggagatctttct 319
||||| || || || || ||||||||||| |||||
Sbjct: 45114938 atcaataccttttattccaacaaggagatttttct 45114972
Score = 65.9 bits (33), Expect = 5e-08
Identities = 57/65 (87%)
Strand = Plus / Plus
Query: 1038 tatattgatcaagaggaactcaacaagacaaagcctatttggaccagaaaccccgatgac 1097
||||||||||| || ||||| |||||||| ||||| || |||||||| ||||| ||||||
Sbjct: 45116308 tatattgatcaggaagaactgaacaagaccaagcccatctggaccaggaaccctgatgac 45116367
Query: 1098 atcac 1102
|||||
Sbjct: 45116368 atcac 45116372
>Sscrofa_Chr02
|| Length = 162569375
Score = 91.7 bits (46), Expect = 9e-16
Identities = 215/269 (79%), Gaps = 8/269 (2%)
Strand = Plus / Plus
Query: 162 agcccgtgccgtccttcagccaagatgcccgaggaaacccagacccaagaccagccgatg 221
|||||||| |||||||||||||||| | |||||||||||||||||||||||| ||||
Sbjct: 82259091 agcccgtgtggtccttcagccaagatactggaggaaacccagacccaagaccagttgatg 82259150
Query: 222 gaggaggaggaggtggagacgttcgccttccaggcggaaatcgcccagttgatgtcgttg 281
|| |||| | |||||||| |||| ||||| ||| | |||||||||||||| ||
Sbjct: 82259151 gaagagg------ttgagacgtttccctttcaggcagaact-gcccagttgatgtcactg 82259203
Query: 282 atcatcaacactttctactcgaacaaggagatctttctgagggagctcatttccaactcg 341
| ||| || |||||||||||||| | || ||| ||||||| |||| ||||| || ||
Sbjct: 82259204 accat-aatactttctactcgaatcaagaactctctctgaggcagcttatttcaaattca 82259262
Query: 342 tccgatgctttggacaagatcagatacgaaagcctgacggatcccagtaaactagactcc 401
| ||||| ||||||| | | || |||||| | | |||||||||||| ||||||
Sbjct: 82259263 ttggatgcactggacaaaagaggctatgaaagcttcatagatcccagtaaatcagactct 82259322
Query: 402 gggaaagagctgcacattaatctcattcc 430
|||||||||||||||||||||||||||||
Sbjct: 82259323 gggaaagagctgcacattaatctcattcc 82259351
Score = 89.7 bits (45), Expect = 3e-15
Identities = 146/177 (82%), Gaps = 7/177 (3%)
Strand = Plus / Plus
Query: 708 gacacaggagaacctatgggtcgtggaacaaaggttattctacatctgaaagaagaccaa 767
|||||||| |||||||||||| ||| |||||||||||||| |||||| ||| |||||||
Sbjct: 82259605 gacacaggcaaacctatgggtcatggcacaaaggttattctgcatctgtaaggagaccaa 82259664
Query: 768 actgagtacttggaagaaaggagaataaaggagattgtgaagaaacactctcagtttatt 827
|| |||| | ||| ||||| | |||||||||||| ||||| ||||||||||| | | |
Sbjct: 82259665 acggagt-cctgggagaaa--acaataaaggagatcgtgaaaaaacactctcaatgttct 82259721
Query: 828 ggctaccc----cattactctcttcgtggagaaggaacgtgataaagaagtcagtga 880
||||| || |||| |||| | |||||||||||| ||||||||||||||||||
Sbjct: 82259722 ggctatcccactcatttctctttatgtggagaaggaagatgataaagaagtcagtga 82259778
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 23,965,903
Number of extensions: 230
Number of successful extensions: 230
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 229
Number of HSP's successfully gapped: 7
Length of query: 1228
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1207
Effective length of database: 2,808,413,156
Effective search space: 3389754679292
Effective search space used: 3389754679292
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)