Animal-Genome cDNA 20110601C-002205


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002205
         (1023 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001091037.1| DNA-binding protein inhibitor ID-1 [Bos taur...   243   2e-64
Alignment   gi|NP_001029403.1| DNA-binding protein inhibitor ID-2 [Bos taur...    92   6e-19
Alignment   gi|NP_001014950.1| DNA-binding protein inhibitor ID-3 [Bos taur...    76   5e-14

>ref|NP_001091037.1| DNA-binding protein inhibitor ID-1 [Bos taurus].
          Length = 154

 Score =  243 bits (621), Expect = 2e-64
 Identities = 125/154 (81%), Positives = 126/154 (81%)
 Frame = +3

Query: 108 MKVXXXXXXXXXXPSCXXXXXXXXXXXXEVVRCLSEQSVAISRCAGGPGARLPPLLDEQQ 287
           MKV          PSC            EVVRCLSEQSVAISRCAGGPGARLP LL+EQ 
Sbjct: 1   MKVASGSAAAAAGPSCALKAGKAAGGAGEVVRCLSEQSVAISRCAGGPGARLPALLEEQP 60

Query: 288 VNVLLYDMNGCYSRLKELVPTLPQNRKVSRVEILQHVIDYIWDLELELNSESQVGTQGGR 467
           VNVLLYDMNGCYSRLKELVPTLPQNRKVSRVEILQHVIDYIWDLELELNSES VGT GGR
Sbjct: 61  VNVLLYDMNGCYSRLKELVPTLPQNRKVSRVEILQHVIDYIWDLELELNSESHVGTPGGR 120

Query: 468 GLPARAPLSTLNGEISALAAETACVPADDRILCR 569
           GLPARAPLSTLNGEI ALAAE ACVPADDRILCR
Sbjct: 121 GLPARAPLSTLNGEIGALAAEAACVPADDRILCR 154


>ref|NP_001029403.1| DNA-binding protein inhibitor ID-2 [Bos taurus].
          Length = 134

 Score = 92.4 bits (228), Expect = 6e-19
 Identities = 48/99 (48%), Positives = 70/99 (70%), Gaps = 9/99 (9%)
 Frame = +3

Query: 297 LLYDMNGCYSRLKELVPTLPQNRKVSRVEILQHVIDYIWDLELELNSESQVGT----QGG 464
           LLY+MN CYS+LKELVP++PQN+KVS++EILQHVIDYI DL++ L+S   + +    + G
Sbjct: 35  LLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALDSHPTIVSLHHQRPG 94

Query: 465 RGLPARAPLSTLNGEISALAAETACVPA-----DDRILC 566
           +   +R PL+TLN +IS L+ + +  P+     D + LC
Sbjct: 95  QSQASRTPLTTLNTDISILSLQASEFPSELMSNDSKALC 133


>ref|NP_001014950.1| DNA-binding protein inhibitor ID-3 [Bos taurus].
          Length = 119

 Score = 75.9 bits (185), Expect = 5e-14
 Identities = 48/95 (50%), Positives = 60/95 (63%)
 Frame = +3

Query: 192 EVVRCLSEQSVAISRCAGGPGARLPPLLDEQQVNVLLYDMNGCYSRLKELVPTLPQNRKV 371
           E V CLSE+S+AI+R  G   A   PL        LL DMN CYSRL+ELVP +P+  ++
Sbjct: 12  EAVCCLSERSLAIARGRGKSPAAEEPLS-------LLDDMNHCYSRLRELVPGVPRGTQL 64

Query: 372 SRVEILQHVIDYIWDLELELNSESQVGTQGGRGLP 476
           S+VEILQ VIDYI DL++ L +E   G   G  LP
Sbjct: 65  SQVEILQRVIDYILDLQVVL-AEPAPGPPDGPHLP 98


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 37,787,144
Number of extensions: 1094565
Number of successful extensions: 5968
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 5923
Number of HSP's successfully gapped: 3
Length of query: 341
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 238
Effective length of database: 14,273,310
Effective search space: 3397047780
Effective search space used: 3397047780
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002205
         (1023 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_852210.1| PREDICTED: similar to DNA-binding protein inhib...   258   8e-69
Alignment   gi|NP_001003025.1| DNA-binding protein inhibitor ID-3 [Canis lu...    76   6e-14
Alignment   gi|XP_853301.1| PREDICTED: similar to inhibitor of DNA binding ...    72   9e-13

>ref|XP_852210.1| PREDICTED: similar to DNA-binding protein inhibitor ID-1 (Inhibitor
           of DNA binding 1) [Canis familiaris].
          Length = 203

 Score =  258 bits (658), Expect = 8e-69
 Identities = 141/185 (76%), Positives = 144/185 (77%), Gaps = 3/185 (1%)
 Frame = +3

Query: 24  STAAISP*SPGVR-LLCPLRFIS--HPDARIMKVXXXXXXXXXXPSCXXXXXXXXXXXXE 194
           +TA+  P  PG R +   LRF S    DA IMKV          PSC            E
Sbjct: 19  TTASPPPRGPGSRRVTASLRFGSPLFSDASIMKVASGSAAAAAGPSCALKAGKTAGGAGE 78

Query: 195 VVRCLSEQSVAISRCAGGPGARLPPLLDEQQVNVLLYDMNGCYSRLKELVPTLPQNRKVS 374
           VVRCLSEQSVAISRCAGG GARLP LLDEQQVNVLLYDMNGCYSRLKELVPTLPQNRKVS
Sbjct: 79  VVRCLSEQSVAISRCAGGAGARLPALLDEQQVNVLLYDMNGCYSRLKELVPTLPQNRKVS 138

Query: 375 RVEILQHVIDYIWDLELELNSESQVGTQGGRGLPARAPLSTLNGEISALAAETACVPADD 554
           RVEILQHVIDYIWDLELELNSESQVGT GGRGLPARAPLSTLNGEISALAAE ACVPADD
Sbjct: 139 RVEILQHVIDYIWDLELELNSESQVGTPGGRGLPARAPLSTLNGEISALAAEAACVPADD 198

Query: 555 RILCR 569
           RILCR
Sbjct: 199 RILCR 203


>ref|NP_001003025.1| DNA-binding protein inhibitor ID-3 [Canis lupus familiaris].
          Length = 119

 Score = 75.9 bits (185), Expect = 6e-14
 Identities = 49/96 (51%), Positives = 61/96 (63%), Gaps = 1/96 (1%)
 Frame = +3

Query: 192 EVVRCLSEQSVAISRCAG-GPGARLPPLLDEQQVNVLLYDMNGCYSRLKELVPTLPQNRK 368
           E V CLSE+S+AI+R  G GP A  P  L        L DMN CYSRL+ELVP +P+  +
Sbjct: 12  EAVCCLSERSLAIARGRGKGPAAEEPLSL--------LDDMNHCYSRLRELVPGVPRGTQ 63

Query: 369 VSRVEILQHVIDYIWDLELELNSESQVGTQGGRGLP 476
           +S+VEILQ VIDYI DL++ L +E   G   G  LP
Sbjct: 64  LSQVEILQRVIDYILDLQVVL-AEPAPGPPDGPHLP 98


>ref|XP_853301.1| PREDICTED: similar to inhibitor of DNA binding 4 [Canis
           familiaris].
          Length = 119

 Score = 72.0 bits (175), Expect = 9e-13
 Identities = 41/87 (47%), Positives = 51/87 (58%), Gaps = 11/87 (12%)
 Frame = +3

Query: 198 VRCLSEQ-----------SVAISRCAGGPGARLPPLLDEQQVNVLLYDMNGCYSRLKELV 344
           +RCL+E            + A +RC     A   P L       L  DMN CYSRL+ LV
Sbjct: 25  LRCLAEHGHSLGGSAAAAAAAAARCKAAEAAADEPAL------CLQCDMNDCYSRLRRLV 78

Query: 345 PTLPQNRKVSRVEILQHVIDYIWDLEL 425
           PT+P N+KVS+VEI+QHVIDYI DL+L
Sbjct: 79  PTIPPNKKVSKVEIMQHVIDYILDLQL 105


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 39,427,167
Number of extensions: 1118125
Number of successful extensions: 6191
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 6160
Number of HSP's successfully gapped: 3
Length of query: 341
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 238
Effective length of database: 15,440,896
Effective search space: 3674933248
Effective search space used: 3674933248
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002205
         (1023 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_002156.2| DNA-binding protein inhibitor ID-1 isoform a [H...   234   1e-61
Alignment   gi|NP_851998.1| DNA-binding protein inhibitor ID-1 isoform b [H...   208   6e-54
Alignment   gi|NP_002157.2| DNA-binding protein inhibitor ID-2 [Homo sapien...    93   3e-19
Alignment   gi|NP_001537.1| DNA-binding protein inhibitor ID-4 [Homo sapien...    77   2e-14
Alignment   gi|NP_002158.3| DNA-binding protein inhibitor ID-3 [Homo sapien...    76   6e-14

>ref|NP_002156.2| DNA-binding protein inhibitor ID-1 isoform a [Homo sapiens].
          Length = 155

 Score =  234 bits (597), Expect = 1e-61
 Identities = 119/141 (84%), Positives = 122/141 (86%)
 Frame = +3

Query: 147 PSCXXXXXXXXXXXXEVVRCLSEQSVAISRCAGGPGARLPPLLDEQQVNVLLYDMNGCYS 326
           PSC            EVVRCLSEQSVAISRCAGG GARLP LLDEQQVNVLLYDMNGCYS
Sbjct: 15  PSCALKAGKTASGAGEVVRCLSEQSVAISRCAGGAGARLPALLDEQQVNVLLYDMNGCYS 74

Query: 327 RLKELVPTLPQNRKVSRVEILQHVIDYIWDLELELNSESQVGTQGGRGLPARAPLSTLNG 506
           RLKELVPTLPQNRKVS+VEILQHVIDYI DL+LELNSES+VGT GGRGLP RAPLSTLNG
Sbjct: 75  RLKELVPTLPQNRKVSKVEILQHVIDYIRDLQLELNSESEVGTPGGRGLPVRAPLSTLNG 134

Query: 507 EISALAAETACVPADDRILCR 569
           EISAL AE ACVPADDRILCR
Sbjct: 135 EISALTAEAACVPADDRILCR 155


>ref|NP_851998.1| DNA-binding protein inhibitor ID-1 isoform b [Homo sapiens].
          Length = 149

 Score =  208 bits (530), Expect = 6e-54
 Identities = 107/128 (83%), Positives = 110/128 (85%)
 Frame = +3

Query: 147 PSCXXXXXXXXXXXXEVVRCLSEQSVAISRCAGGPGARLPPLLDEQQVNVLLYDMNGCYS 326
           PSC            EVVRCLSEQSVAISRCAGG GARLP LLDEQQVNVLLYDMNGCYS
Sbjct: 15  PSCALKAGKTASGAGEVVRCLSEQSVAISRCAGGAGARLPALLDEQQVNVLLYDMNGCYS 74

Query: 327 RLKELVPTLPQNRKVSRVEILQHVIDYIWDLELELNSESQVGTQGGRGLPARAPLSTLNG 506
           RLKELVPTLPQNRKVS+VEILQHVIDYI DL+LELNSES+VGT GGRGLP RAPLSTLNG
Sbjct: 75  RLKELVPTLPQNRKVSKVEILQHVIDYIRDLQLELNSESEVGTPGGRGLPVRAPLSTLNG 134

Query: 507 EISALAAE 530
           EISAL AE
Sbjct: 135 EISALTAE 142


>ref|NP_002157.2| DNA-binding protein inhibitor ID-2 [Homo sapiens].
          Length = 134

 Score = 93.2 bits (230), Expect = 3e-19
 Identities = 56/129 (43%), Positives = 81/129 (62%), Gaps = 9/129 (6%)
 Frame = +3

Query: 207 LSEQSVAISRCAGGPGARLPPLLDEQQVNVLLYDMNGCYSRLKELVPTLPQNRKVSRVEI 386
           LS+ S+ ISR          P+ D      LLY+MN CYS+LKELVP++PQN+KVS++EI
Sbjct: 15  LSDHSLGISRSK-------TPVDDPMS---LLYNMNDCYSKLKELVPSIPQNKKVSKMEI 64

Query: 387 LQHVIDYIWDLELELNSESQVGT----QGGRGLPARAPLSTLNGEISALAAETACVPA-- 548
           LQHVIDYI DL++ L+S   + +    + G+   +R PL+TLN +IS L+ + +  P+  
Sbjct: 65  LQHVIDYILDLQIALDSHPTIVSLHHQRPGQNQASRTPLTTLNTDISILSLQASEFPSEL 124

Query: 549 ---DDRILC 566
              D + LC
Sbjct: 125 MSNDSKALC 133


>ref|NP_001537.1| DNA-binding protein inhibitor ID-4 [Homo sapiens].
          Length = 161

 Score = 77.4 bits (189), Expect = 2e-14
 Identities = 53/142 (37%), Positives = 69/142 (48%), Gaps = 18/142 (12%)
 Frame = +3

Query: 198 VRCLSEQ------SVAISRCAGGPGARLPPLLDEQQVNVLLYDMNGCYSRLKELVPTLPQ 359
           +RCL+E       S A +  A     +      ++    L  DMN CYSRL+ LVPT+P 
Sbjct: 25  LRCLAEHGHSLGGSAAAAAAAAAARCKAAEAAADEPALCLQCDMNDCYSRLRRLVPTIPP 84

Query: 360 NRKVSRVEILQHVIDYIWDLELELNSESQVGTQGG------------RGLPARAPLSTLN 503
           N+KVS+VEILQHVIDYI DL+L L +   +  Q                 P R PL+ LN
Sbjct: 85  NKKVSKVEILQHVIDYILDLQLALETHPALLRQPPPPAPPHHPAGTCPAAPPRTPLTALN 144

Query: 504 GEISALAAETACVPADDRILCR 569
            + +      A     D ILCR
Sbjct: 145 TDPAG-----AVNKQGDSILCR 161


>ref|NP_002158.3| DNA-binding protein inhibitor ID-3 [Homo sapiens].
          Length = 119

 Score = 75.9 bits (185), Expect = 6e-14
 Identities = 49/96 (51%), Positives = 61/96 (63%), Gaps = 1/96 (1%)
 Frame = +3

Query: 192 EVVRCLSEQSVAISRCAG-GPGARLPPLLDEQQVNVLLYDMNGCYSRLKELVPTLPQNRK 368
           E V CLSE+S+AI+R  G GP A  P  L        L DMN CYSRL+ELVP +P+  +
Sbjct: 12  EAVCCLSERSLAIARGRGKGPAAEEPLSL--------LDDMNHCYSRLRELVPGVPRGTQ 63

Query: 369 VSRVEILQHVIDYIWDLELELNSESQVGTQGGRGLP 476
           +S+VEILQ VIDYI DL++ L +E   G   G  LP
Sbjct: 64  LSQVEILQRVIDYILDLQVVL-AEPAPGPPDGPHLP 98


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 38,408,341
Number of extensions: 1074583
Number of successful extensions: 5788
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 5744
Number of HSP's successfully gapped: 5
Length of query: 341
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 238
Effective length of database: 14,901,872
Effective search space: 3546645536
Effective search space used: 3546645536
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002205
         (1023 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_034625.1| DNA-binding protein inhibitor ID-1 [Mus musculu...   214   7e-56
Alignment   gi|NP_034626.1| DNA-binding protein inhibitor ID-2 [Mus musculu...    94   2e-19
Alignment   gi|NP_112443.1| DNA-binding protein inhibitor ID-4 [Mus musculu...    77   3e-14
Alignment   gi|NP_032347.1| DNA-binding protein inhibitor ID-3 [Mus musculu...    75   1e-13

>ref|NP_034625.1| DNA-binding protein inhibitor ID-1 [Mus musculus].
          Length = 148

 Score =  214 bits (546), Expect = 7e-56
 Identities = 118/154 (76%), Positives = 121/154 (78%)
 Frame = +3

Query: 108 MKVXXXXXXXXXXPSCXXXXXXXXXXXXEVVRCLSEQSVAISRCAGGPGARLPPLLDEQQ 287
           MKV          PSC            EVV  LSEQSVAISRCAG    RLP LLDEQQ
Sbjct: 1   MKVASGSAAAAAGPSCSLKAGRTAG---EVVLGLSEQSVAISRCAG---TRLPALLDEQQ 54

Query: 288 VNVLLYDMNGCYSRLKELVPTLPQNRKVSRVEILQHVIDYIWDLELELNSESQVGTQGGR 467
           VNVLLYDMNGCYSRLKELVPTLPQNRKVS+VEILQHVIDYI DL+LELNSES+VGT GGR
Sbjct: 55  VNVLLYDMNGCYSRLKELVPTLPQNRKVSKVEILQHVIDYIRDLQLELNSESEVGTTGGR 114

Query: 468 GLPARAPLSTLNGEISALAAETACVPADDRILCR 569
           GLP RAPLSTLNGEISALAAE ACVPADDRILCR
Sbjct: 115 GLPVRAPLSTLNGEISALAAEAACVPADDRILCR 148


>ref|NP_034626.1| DNA-binding protein inhibitor ID-2 [Mus musculus].
          Length = 134

 Score = 93.6 bits (231), Expect = 2e-19
 Identities = 55/129 (42%), Positives = 82/129 (63%), Gaps = 9/129 (6%)
 Frame = +3

Query: 207 LSEQSVAISRCAGGPGARLPPLLDEQQVNVLLYDMNGCYSRLKELVPTLPQNRKVSRVEI 386
           LS+ S+ ISR          P+ D      LLY+MN CYS+LKELVP++PQN+KV+++EI
Sbjct: 15  LSDHSLGISRSK-------TPVDDPMS---LLYNMNDCYSKLKELVPSIPQNKKVTKMEI 64

Query: 387 LQHVIDYIWDLELELNSESQVGT----QGGRGLPARAPLSTLNGEISALAAETACVPA-- 548
           LQHVIDYI DL++ L+S   + +    + G+   +R PL+TLN +IS L+ + +  P+  
Sbjct: 65  LQHVIDYILDLQIALDSHPTIVSLHHQRPGQNQASRTPLTTLNTDISILSLQASEFPSEL 124

Query: 549 ---DDRILC 566
              D ++LC
Sbjct: 125 MSNDSKVLC 133


>ref|NP_112443.1| DNA-binding protein inhibitor ID-4 [Mus musculus].
          Length = 161

 Score = 76.6 bits (187), Expect = 3e-14
 Identities = 53/142 (37%), Positives = 69/142 (48%), Gaps = 18/142 (12%)
 Frame = +3

Query: 198 VRCLSEQ------SVAISRCAGGPGARLPPLLDEQQVNVLLYDMNGCYSRLKELVPTLPQ 359
           +RCL+E       S A +  A     +      ++    L  DMN CYSRL+ LVPT+P 
Sbjct: 25  LRCLAEHGHSLGGSAAAAAAAAAARCKAAEAAADEPALCLQCDMNDCYSRLRRLVPTIPP 84

Query: 360 NRKVSRVEILQHVIDYIWDLELELNSESQVGTQ------------GGRGLPARAPLSTLN 503
           N+KVS+VEILQHVIDYI DL+L L +   +  Q                 P R PL+ LN
Sbjct: 85  NKKVSKVEILQHVIDYILDLQLALETHPALLRQPPPPAPPLHPAGACPVAPPRTPLTALN 144

Query: 504 GEISALAAETACVPADDRILCR 569
            + +      A     D ILCR
Sbjct: 145 TDPAG-----AVNKQGDSILCR 161


>ref|NP_032347.1| DNA-binding protein inhibitor ID-3 [Mus musculus].
          Length = 119

 Score = 74.7 bits (182), Expect = 1e-13
 Identities = 47/95 (49%), Positives = 60/95 (63%)
 Frame = +3

Query: 192 EVVRCLSEQSVAISRCAGGPGARLPPLLDEQQVNVLLYDMNGCYSRLKELVPTLPQNRKV 371
           E V CLSE+S+AI+R  G   +   PL        LL DMN CYSRL+ELVP +P+  ++
Sbjct: 12  EAVCCLSERSLAIARGRGKSPSTEEPLS-------LLDDMNHCYSRLRELVPGVPRGTQL 64

Query: 372 SRVEILQHVIDYIWDLELELNSESQVGTQGGRGLP 476
           S+VEILQ VIDYI DL++ L +E   G   G  LP
Sbjct: 65  SQVEILQRVIDYILDLQVVL-AEPAPGPPDGPHLP 98


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 32,188,383
Number of extensions: 878143
Number of successful extensions: 4293
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 4250
Number of HSP's successfully gapped: 4
Length of query: 341
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 239
Effective length of database: 12,553,887
Effective search space: 3000378993
Effective search space used: 3000378993
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002205
         (1023 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_003134425.2| PREDICTED: DNA-binding protein inhibitor ID-...   258   4e-69
Alignment   gi|XP_003361826.1| PREDICTED: DNA-binding protein inhibitor ID-...   181   4e-46
Alignment   gi|NP_001033054.1| DNA-binding protein inhibitor ID-2 [Sus scro...    93   2e-19
Alignment   gi|NP_001230531.1| inhibitor of DNA binding 3, dominant negativ...    76   3e-14
Alignment   gi|NP_001116602.1| DNA-binding protein inhibitor ID-4 [Sus scro...    75   6e-14
Alignment   gi|XP_003359986.1| PREDICTED: hypothetical protein LOC100622963...    70   2e-12

>ref|XP_003134425.2| PREDICTED: DNA-binding protein inhibitor ID-1-like [Sus scrofa].
          Length = 154

 Score =  258 bits (659), Expect = 4e-69
 Identities = 132/154 (85%), Positives = 132/154 (85%)
 Frame = +3

Query: 108 MKVXXXXXXXXXXPSCXXXXXXXXXXXXEVVRCLSEQSVAISRCAGGPGARLPPLLDEQQ 287
           MKV          PSC            EVVRCLSEQSVAISRCAGGPGARLPPLLDEQQ
Sbjct: 1   MKVASGSATATAGPSCALKAGKTAGGAGEVVRCLSEQSVAISRCAGGPGARLPPLLDEQQ 60

Query: 288 VNVLLYDMNGCYSRLKELVPTLPQNRKVSRVEILQHVIDYIWDLELELNSESQVGTQGGR 467
           VNVLLYDMNGCYSRLKELVPTLPQNRKVSRVEILQHVIDYIWDLELELNSESQVGTQGGR
Sbjct: 61  VNVLLYDMNGCYSRLKELVPTLPQNRKVSRVEILQHVIDYIWDLELELNSESQVGTQGGR 120

Query: 468 GLPARAPLSTLNGEISALAAETACVPADDRILCR 569
           GLPARAPLSTLNGEISALAAETACVPADDRILCR
Sbjct: 121 GLPARAPLSTLNGEISALAAETACVPADDRILCR 154


>ref|XP_003361826.1| PREDICTED: DNA-binding protein inhibitor ID-1-like, partial [Sus
           scrofa].
          Length = 103

 Score =  181 bits (460), Expect = 4e-46
 Identities = 99/126 (78%), Positives = 99/126 (78%)
 Frame = +3

Query: 192 EVVRCLSEQSVAISRCAGGPGARLPPLLDEQQVNVLLYDMNGCYSRLKELVPTLPQNRKV 371
           EVVRCLSEQSVAISRCA                           SRLKELVPTLPQNRKV
Sbjct: 4   EVVRCLSEQSVAISRCAD--------------------------SRLKELVPTLPQNRKV 37

Query: 372 SRVEILQHVIDYIWDLELELNSESQVGTQGGRGLPARAPLSTLNGEISALAAETACVPAD 551
           SRVEILQHVIDYIWDLELELNSESQVGTQGGRGLPARAPLSTLNGEISALAAETACVPAD
Sbjct: 38  SRVEILQHVIDYIWDLELELNSESQVGTQGGRGLPARAPLSTLNGEISALAAETACVPAD 97

Query: 552 DRILCR 569
           DRILCR
Sbjct: 98  DRILCR 103


>ref|NP_001033054.1| DNA-binding protein inhibitor ID-2 [Sus scrofa].
          Length = 134

 Score = 93.2 bits (230), Expect = 2e-19
 Identities = 56/129 (43%), Positives = 81/129 (62%), Gaps = 9/129 (6%)
 Frame = +3

Query: 207 LSEQSVAISRCAGGPGARLPPLLDEQQVNVLLYDMNGCYSRLKELVPTLPQNRKVSRVEI 386
           LS+ S+ ISR          P+ D      LLY+MN CYS+LKELVP++PQN+KVS++EI
Sbjct: 15  LSDHSLGISRSK-------TPVDDPMS---LLYNMNDCYSKLKELVPSIPQNKKVSKMEI 64

Query: 387 LQHVIDYIWDLELELNSESQVGT----QGGRGLPARAPLSTLNGEISALAAETACVP--- 545
           LQHVIDYI DL++ L+S   + +    + G+   +R PL+TLN +IS L+ + +  P   
Sbjct: 65  LQHVIDYILDLQIALDSHPTIVSLHHQRPGQSQASRTPLTTLNTDISILSLQASEFPSEL 124

Query: 546 --ADDRILC 566
             +D + LC
Sbjct: 125 MSSDSKALC 133


>ref|NP_001230531.1| inhibitor of DNA binding 3, dominant negative helix-loop-helix
           protein [Sus scrofa].
          Length = 119

 Score = 75.9 bits (185), Expect = 3e-14
 Identities = 49/96 (51%), Positives = 61/96 (63%), Gaps = 1/96 (1%)
 Frame = +3

Query: 192 EVVRCLSEQSVAISRCAG-GPGARLPPLLDEQQVNVLLYDMNGCYSRLKELVPTLPQNRK 368
           E V CLSE+S+AI+R  G GP A  P  L        L DMN CYSRL+ELVP +P+  +
Sbjct: 12  EAVCCLSERSLAIARGRGKGPAAEEPLSL--------LDDMNHCYSRLRELVPGVPRGTQ 63

Query: 369 VSRVEILQHVIDYIWDLELELNSESQVGTQGGRGLP 476
           +S+VEILQ VIDYI DL++ L +E   G   G  LP
Sbjct: 64  LSQVEILQRVIDYILDLQVVL-AEPAPGPPDGPHLP 98


>ref|NP_001116602.1| DNA-binding protein inhibitor ID-4 [Sus scrofa].
          Length = 161

 Score = 75.1 bits (183), Expect = 6e-14
 Identities = 52/142 (36%), Positives = 68/142 (47%), Gaps = 18/142 (12%)
 Frame = +3

Query: 198 VRCLSEQ------SVAISRCAGGPGARLPPLLDEQQVNVLLYDMNGCYSRLKELVPTLPQ 359
           +RCL+E       S A +  A     +      ++    L  DMN CYSRL+ LVPT+P 
Sbjct: 25  LRCLAEHGHSLGGSAAAAAAAAAARCKAAEAAADEPALCLQCDMNDCYSRLRRLVPTIPP 84

Query: 360 NRKVSRVEILQHVIDYIWDLELELNSESQVGTQGG------------RGLPARAPLSTLN 503
           N+KVS+VEIL HVIDYI DL+L L +   +  Q                 P R PL+ LN
Sbjct: 85  NKKVSKVEILPHVIDYILDLQLALETHPALLRQPPPPAPPHHPAGTCPAAPPRTPLTALN 144

Query: 504 GEISALAAETACVPADDRILCR 569
            + +      A     D ILCR
Sbjct: 145 TDPAG-----AVNKQGDSILCR 161


>ref|XP_003359986.1| PREDICTED: hypothetical protein LOC100622963 [Sus scrofa].
          Length = 46

 Score = 70.1 bits (170), Expect = 2e-12
 Identities = 37/46 (80%), Positives = 37/46 (80%)
 Frame = -3

Query: 229 MATLCSERQRTTSPAPPAVLPAFSAQLGXXXXXXXXXATFMILASG 92
           MATLCSERQRTTSPAPPAVLPAFSAQLG         ATFMILASG
Sbjct: 1   MATLCSERQRTTSPAPPAVLPAFSAQLGPAVAVALPLATFMILASG 46


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 24,589,539
Number of extensions: 727192
Number of successful extensions: 3960
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 3927
Number of HSP's successfully gapped: 6
Length of query: 341
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 241
Effective length of database: 8,854,232
Effective search space: 2133869912
Effective search space used: 2133869912
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002205
         (1023 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr17                                                        1045   0.0  
gb|GL895495.2| Sus scrofa unplaced genomic scaffold ChrUScaf3379      139   3e-30
Sscrofa_Chr03                                                          68   1e-08

>Sscrofa_Chr17 
||          Length = 69701581

 Score = 1045 bits (527), Expect = 0.0
 Identities = 527/527 (100%)
 Strand = Plus / Plus

                                                                            
Query: 4        gcacttttcacggcagtctctctaccgctgcgatctcgccctagagcccaggagtccgcc 63
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40187158 gcacttttcacggcagtctctctaccgctgcgatctcgccctagagcccaggagtccgcc 40187217

                                                                            
Query: 64       tcctctgtccgcttcggtttatctctcaccccgacgcaagaatcatgaaggtcgccagtg 123
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40187218 tcctctgtccgcttcggtttatctctcaccccgacgcaagaatcatgaaggtcgccagtg 40187277

                                                                            
Query: 124      gcagcgccacggccaccgcgggccccagctgcgcgctgaaggccggcaagacggcgggcg 183
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40187278 gcagcgccacggccaccgcgggccccagctgcgcgctgaaggccggcaagacggcgggcg 40187337

                                                                            
Query: 184      gcgcgggcgaggtggtgcgctgcctctccgagcagagcgtggccatctcgcgctgtgcgg 243
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40187338 gcgcgggcgaggtggtgcgctgcctctccgagcagagcgtggccatctcgcgctgtgcgg 40187397

                                                                            
Query: 244      gtggccccggggcacgcctgcctcccctactcgacgaacagcaggtgaacgtgctcctct 303
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40187398 gtggccccggggcacgcctgcctcccctactcgacgaacagcaggtgaacgtgctcctct 40187457

                                                                            
Query: 304      acgacatgaacggctgctattctcgcctcaaggagctggtgcccactctgccccagaacc 363
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40187458 acgacatgaacggctgctattctcgcctcaaggagctggtgcccactctgccccagaacc 40187517

                                                                            
Query: 364      gcaaggtgagcagggtggagatcctccagcatgtcatcgactacatctgggacctggagt 423
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40187518 gcaaggtgagcagggtggagatcctccagcatgtcatcgactacatctgggacctggagt 40187577

                                                                            
Query: 424      tggagctgaactcggaatcccaagttgggacccaaggcggccggggactccccgcccggg 483
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40187578 tggagctgaactcggaatcccaagttgggacccaaggcggccggggactccccgcccggg 40187637

                                                               
Query: 484      ctccgctcagcaccctcaacggcgaaatcagcgccctggcggcagag 530
                |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40187638 ctccgctcagcaccctcaacggcgaaatcagcgccctggcggcagag 40187684



 Score =  819 bits (413), Expect = 0.0
 Identities = 413/413 (100%)
 Strand = Plus / Plus

                                                                            
Query: 529      agacagcatgtgttccagcggacgatcgcatcttgtgtcgctgaagcgccgcccttgggg 588
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40187910 agacagcatgtgttccagcggacgatcgcatcttgtgtcgctgaagcgccgcccttgggg 40187969

                                                                            
Query: 589      acctgcggaccccagccctccagggggcgagagaaatcagtgttctctggtccttccaag 648
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40187970 acctgcggaccccagccctccagggggcgagagaaatcagtgttctctggtccttccaag 40188029

                                                                            
Query: 649      cacctcgccatagctggggagaacaagacagatcggcggctgttgggcgcttgctagatc 708
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40188030 cacctcgccatagctggggagaacaagacagatcggcggctgttgggcgcttgctagatc 40188089

                                                                            
Query: 709      cagcccagggctgggggtactgatgagggcaggctgaccctcccttctcactcaccagcc 768
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40188090 cagcccagggctgggggtactgatgagggcaggctgaccctcccttctcactcaccagcc 40188149

                                                                            
Query: 769      accagagacttgggggagttccccccatgtgtttctattttttgaaaagcagacatttta 828
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40188150 accagagacttgggggagttccccccatgtgtttctattttttgaaaagcagacatttta 40188209

                                                                            
Query: 829      aaaaatggtcacgtttggtgcttctcagatttctgaggaaattaattgctttgtattgta 888
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40188210 aaaaatggtcacgtttggtgcttctcagatttctgaggaaattaattgctttgtattgta 40188269

                                                                     
Query: 889      tattacaatgatcaccgactgagaatattgttttacaatagttctgtggggtg 941
                |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40188270 tattacaatgatcaccgactgagaatattgttttacaatagttctgtggggtg 40188322


>gb|GL895495.2| Sus scrofa unplaced genomic scaffold ChrUScaf3379
          Length = 952

 Score =  139 bits (70), Expect = 3e-30
 Identities = 70/70 (100%)
 Strand = Plus / Minus

                                                                       
Query: 178 cgggcggcgcgggcgaggtggtgcgctgcctctccgagcagagcgtggccatctcgcgct 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 952 cgggcggcgcgggcgaggtggtgcgctgcctctccgagcagagcgtggccatctcgcgct 893

                     
Query: 238 gtgcgggtgg 247
           ||||||||||
Sbjct: 892 gtgcgggtgg 883


>Sscrofa_Chr03 
||          Length = 144787322

 Score = 67.9 bits (34), Expect = 1e-08
 Identities = 76/90 (84%)
 Strand = Plus / Minus

                                                                             
Query: 330       ctcaaggagctggtgcccactctgccccagaaccgcaaggtgagcagggtggagatcctc 389
                 |||||||||||||||||||   | || ||||||   |||||||||| | |||| ||||| 
Sbjct: 135804029 ctcaaggagctggtgcccagcatccctcagaacaagaaggtgagcaagatggaaatcctg 135803970

                                               
Query: 390       cagcatgtcatcgactacatctgggacctg 419
                 ||||| |||||||||||||||| |||||||
Sbjct: 135803969 cagcacgtcatcgactacatcttggacctg 135803940


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 25,951,128
Number of extensions: 611
Number of successful extensions: 611
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 610
Number of HSP's successfully gapped: 5
Length of query: 1023
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1002
Effective length of database: 2,808,413,156
Effective search space: 2814029982312
Effective search space used: 2814029982312
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)