Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002205
(1023 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001091037.1| DNA-binding protein inhibitor ID-1 [Bos taur... 243 2e-64
Alignment gi|NP_001029403.1| DNA-binding protein inhibitor ID-2 [Bos taur... 92 6e-19
Alignment gi|NP_001014950.1| DNA-binding protein inhibitor ID-3 [Bos taur... 76 5e-14
>ref|NP_001091037.1| DNA-binding protein inhibitor ID-1 [Bos taurus].
Length = 154
Score = 243 bits (621), Expect = 2e-64
Identities = 125/154 (81%), Positives = 126/154 (81%)
Frame = +3
Query: 108 MKVXXXXXXXXXXPSCXXXXXXXXXXXXEVVRCLSEQSVAISRCAGGPGARLPPLLDEQQ 287
MKV PSC EVVRCLSEQSVAISRCAGGPGARLP LL+EQ
Sbjct: 1 MKVASGSAAAAAGPSCALKAGKAAGGAGEVVRCLSEQSVAISRCAGGPGARLPALLEEQP 60
Query: 288 VNVLLYDMNGCYSRLKELVPTLPQNRKVSRVEILQHVIDYIWDLELELNSESQVGTQGGR 467
VNVLLYDMNGCYSRLKELVPTLPQNRKVSRVEILQHVIDYIWDLELELNSES VGT GGR
Sbjct: 61 VNVLLYDMNGCYSRLKELVPTLPQNRKVSRVEILQHVIDYIWDLELELNSESHVGTPGGR 120
Query: 468 GLPARAPLSTLNGEISALAAETACVPADDRILCR 569
GLPARAPLSTLNGEI ALAAE ACVPADDRILCR
Sbjct: 121 GLPARAPLSTLNGEIGALAAEAACVPADDRILCR 154
>ref|NP_001029403.1| DNA-binding protein inhibitor ID-2 [Bos taurus].
Length = 134
Score = 92.4 bits (228), Expect = 6e-19
Identities = 48/99 (48%), Positives = 70/99 (70%), Gaps = 9/99 (9%)
Frame = +3
Query: 297 LLYDMNGCYSRLKELVPTLPQNRKVSRVEILQHVIDYIWDLELELNSESQVGT----QGG 464
LLY+MN CYS+LKELVP++PQN+KVS++EILQHVIDYI DL++ L+S + + + G
Sbjct: 35 LLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALDSHPTIVSLHHQRPG 94
Query: 465 RGLPARAPLSTLNGEISALAAETACVPA-----DDRILC 566
+ +R PL+TLN +IS L+ + + P+ D + LC
Sbjct: 95 QSQASRTPLTTLNTDISILSLQASEFPSELMSNDSKALC 133
>ref|NP_001014950.1| DNA-binding protein inhibitor ID-3 [Bos taurus].
Length = 119
Score = 75.9 bits (185), Expect = 5e-14
Identities = 48/95 (50%), Positives = 60/95 (63%)
Frame = +3
Query: 192 EVVRCLSEQSVAISRCAGGPGARLPPLLDEQQVNVLLYDMNGCYSRLKELVPTLPQNRKV 371
E V CLSE+S+AI+R G A PL LL DMN CYSRL+ELVP +P+ ++
Sbjct: 12 EAVCCLSERSLAIARGRGKSPAAEEPLS-------LLDDMNHCYSRLRELVPGVPRGTQL 64
Query: 372 SRVEILQHVIDYIWDLELELNSESQVGTQGGRGLP 476
S+VEILQ VIDYI DL++ L +E G G LP
Sbjct: 65 SQVEILQRVIDYILDLQVVL-AEPAPGPPDGPHLP 98
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 37,787,144
Number of extensions: 1094565
Number of successful extensions: 5968
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 5923
Number of HSP's successfully gapped: 3
Length of query: 341
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 238
Effective length of database: 14,273,310
Effective search space: 3397047780
Effective search space used: 3397047780
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002205
(1023 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_852210.1| PREDICTED: similar to DNA-binding protein inhib... 258 8e-69
Alignment gi|NP_001003025.1| DNA-binding protein inhibitor ID-3 [Canis lu... 76 6e-14
Alignment gi|XP_853301.1| PREDICTED: similar to inhibitor of DNA binding ... 72 9e-13
>ref|XP_852210.1| PREDICTED: similar to DNA-binding protein inhibitor ID-1 (Inhibitor
of DNA binding 1) [Canis familiaris].
Length = 203
Score = 258 bits (658), Expect = 8e-69
Identities = 141/185 (76%), Positives = 144/185 (77%), Gaps = 3/185 (1%)
Frame = +3
Query: 24 STAAISP*SPGVR-LLCPLRFIS--HPDARIMKVXXXXXXXXXXPSCXXXXXXXXXXXXE 194
+TA+ P PG R + LRF S DA IMKV PSC E
Sbjct: 19 TTASPPPRGPGSRRVTASLRFGSPLFSDASIMKVASGSAAAAAGPSCALKAGKTAGGAGE 78
Query: 195 VVRCLSEQSVAISRCAGGPGARLPPLLDEQQVNVLLYDMNGCYSRLKELVPTLPQNRKVS 374
VVRCLSEQSVAISRCAGG GARLP LLDEQQVNVLLYDMNGCYSRLKELVPTLPQNRKVS
Sbjct: 79 VVRCLSEQSVAISRCAGGAGARLPALLDEQQVNVLLYDMNGCYSRLKELVPTLPQNRKVS 138
Query: 375 RVEILQHVIDYIWDLELELNSESQVGTQGGRGLPARAPLSTLNGEISALAAETACVPADD 554
RVEILQHVIDYIWDLELELNSESQVGT GGRGLPARAPLSTLNGEISALAAE ACVPADD
Sbjct: 139 RVEILQHVIDYIWDLELELNSESQVGTPGGRGLPARAPLSTLNGEISALAAEAACVPADD 198
Query: 555 RILCR 569
RILCR
Sbjct: 199 RILCR 203
>ref|NP_001003025.1| DNA-binding protein inhibitor ID-3 [Canis lupus familiaris].
Length = 119
Score = 75.9 bits (185), Expect = 6e-14
Identities = 49/96 (51%), Positives = 61/96 (63%), Gaps = 1/96 (1%)
Frame = +3
Query: 192 EVVRCLSEQSVAISRCAG-GPGARLPPLLDEQQVNVLLYDMNGCYSRLKELVPTLPQNRK 368
E V CLSE+S+AI+R G GP A P L L DMN CYSRL+ELVP +P+ +
Sbjct: 12 EAVCCLSERSLAIARGRGKGPAAEEPLSL--------LDDMNHCYSRLRELVPGVPRGTQ 63
Query: 369 VSRVEILQHVIDYIWDLELELNSESQVGTQGGRGLP 476
+S+VEILQ VIDYI DL++ L +E G G LP
Sbjct: 64 LSQVEILQRVIDYILDLQVVL-AEPAPGPPDGPHLP 98
>ref|XP_853301.1| PREDICTED: similar to inhibitor of DNA binding 4 [Canis
familiaris].
Length = 119
Score = 72.0 bits (175), Expect = 9e-13
Identities = 41/87 (47%), Positives = 51/87 (58%), Gaps = 11/87 (12%)
Frame = +3
Query: 198 VRCLSEQ-----------SVAISRCAGGPGARLPPLLDEQQVNVLLYDMNGCYSRLKELV 344
+RCL+E + A +RC A P L L DMN CYSRL+ LV
Sbjct: 25 LRCLAEHGHSLGGSAAAAAAAAARCKAAEAAADEPAL------CLQCDMNDCYSRLRRLV 78
Query: 345 PTLPQNRKVSRVEILQHVIDYIWDLEL 425
PT+P N+KVS+VEI+QHVIDYI DL+L
Sbjct: 79 PTIPPNKKVSKVEIMQHVIDYILDLQL 105
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 39,427,167
Number of extensions: 1118125
Number of successful extensions: 6191
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 6160
Number of HSP's successfully gapped: 3
Length of query: 341
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 238
Effective length of database: 15,440,896
Effective search space: 3674933248
Effective search space used: 3674933248
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002205
(1023 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_002156.2| DNA-binding protein inhibitor ID-1 isoform a [H... 234 1e-61
Alignment gi|NP_851998.1| DNA-binding protein inhibitor ID-1 isoform b [H... 208 6e-54
Alignment gi|NP_002157.2| DNA-binding protein inhibitor ID-2 [Homo sapien... 93 3e-19
Alignment gi|NP_001537.1| DNA-binding protein inhibitor ID-4 [Homo sapien... 77 2e-14
Alignment gi|NP_002158.3| DNA-binding protein inhibitor ID-3 [Homo sapien... 76 6e-14
>ref|NP_002156.2| DNA-binding protein inhibitor ID-1 isoform a [Homo sapiens].
Length = 155
Score = 234 bits (597), Expect = 1e-61
Identities = 119/141 (84%), Positives = 122/141 (86%)
Frame = +3
Query: 147 PSCXXXXXXXXXXXXEVVRCLSEQSVAISRCAGGPGARLPPLLDEQQVNVLLYDMNGCYS 326
PSC EVVRCLSEQSVAISRCAGG GARLP LLDEQQVNVLLYDMNGCYS
Sbjct: 15 PSCALKAGKTASGAGEVVRCLSEQSVAISRCAGGAGARLPALLDEQQVNVLLYDMNGCYS 74
Query: 327 RLKELVPTLPQNRKVSRVEILQHVIDYIWDLELELNSESQVGTQGGRGLPARAPLSTLNG 506
RLKELVPTLPQNRKVS+VEILQHVIDYI DL+LELNSES+VGT GGRGLP RAPLSTLNG
Sbjct: 75 RLKELVPTLPQNRKVSKVEILQHVIDYIRDLQLELNSESEVGTPGGRGLPVRAPLSTLNG 134
Query: 507 EISALAAETACVPADDRILCR 569
EISAL AE ACVPADDRILCR
Sbjct: 135 EISALTAEAACVPADDRILCR 155
>ref|NP_851998.1| DNA-binding protein inhibitor ID-1 isoform b [Homo sapiens].
Length = 149
Score = 208 bits (530), Expect = 6e-54
Identities = 107/128 (83%), Positives = 110/128 (85%)
Frame = +3
Query: 147 PSCXXXXXXXXXXXXEVVRCLSEQSVAISRCAGGPGARLPPLLDEQQVNVLLYDMNGCYS 326
PSC EVVRCLSEQSVAISRCAGG GARLP LLDEQQVNVLLYDMNGCYS
Sbjct: 15 PSCALKAGKTASGAGEVVRCLSEQSVAISRCAGGAGARLPALLDEQQVNVLLYDMNGCYS 74
Query: 327 RLKELVPTLPQNRKVSRVEILQHVIDYIWDLELELNSESQVGTQGGRGLPARAPLSTLNG 506
RLKELVPTLPQNRKVS+VEILQHVIDYI DL+LELNSES+VGT GGRGLP RAPLSTLNG
Sbjct: 75 RLKELVPTLPQNRKVSKVEILQHVIDYIRDLQLELNSESEVGTPGGRGLPVRAPLSTLNG 134
Query: 507 EISALAAE 530
EISAL AE
Sbjct: 135 EISALTAE 142
>ref|NP_002157.2| DNA-binding protein inhibitor ID-2 [Homo sapiens].
Length = 134
Score = 93.2 bits (230), Expect = 3e-19
Identities = 56/129 (43%), Positives = 81/129 (62%), Gaps = 9/129 (6%)
Frame = +3
Query: 207 LSEQSVAISRCAGGPGARLPPLLDEQQVNVLLYDMNGCYSRLKELVPTLPQNRKVSRVEI 386
LS+ S+ ISR P+ D LLY+MN CYS+LKELVP++PQN+KVS++EI
Sbjct: 15 LSDHSLGISRSK-------TPVDDPMS---LLYNMNDCYSKLKELVPSIPQNKKVSKMEI 64
Query: 387 LQHVIDYIWDLELELNSESQVGT----QGGRGLPARAPLSTLNGEISALAAETACVPA-- 548
LQHVIDYI DL++ L+S + + + G+ +R PL+TLN +IS L+ + + P+
Sbjct: 65 LQHVIDYILDLQIALDSHPTIVSLHHQRPGQNQASRTPLTTLNTDISILSLQASEFPSEL 124
Query: 549 ---DDRILC 566
D + LC
Sbjct: 125 MSNDSKALC 133
>ref|NP_001537.1| DNA-binding protein inhibitor ID-4 [Homo sapiens].
Length = 161
Score = 77.4 bits (189), Expect = 2e-14
Identities = 53/142 (37%), Positives = 69/142 (48%), Gaps = 18/142 (12%)
Frame = +3
Query: 198 VRCLSEQ------SVAISRCAGGPGARLPPLLDEQQVNVLLYDMNGCYSRLKELVPTLPQ 359
+RCL+E S A + A + ++ L DMN CYSRL+ LVPT+P
Sbjct: 25 LRCLAEHGHSLGGSAAAAAAAAAARCKAAEAAADEPALCLQCDMNDCYSRLRRLVPTIPP 84
Query: 360 NRKVSRVEILQHVIDYIWDLELELNSESQVGTQGG------------RGLPARAPLSTLN 503
N+KVS+VEILQHVIDYI DL+L L + + Q P R PL+ LN
Sbjct: 85 NKKVSKVEILQHVIDYILDLQLALETHPALLRQPPPPAPPHHPAGTCPAAPPRTPLTALN 144
Query: 504 GEISALAAETACVPADDRILCR 569
+ + A D ILCR
Sbjct: 145 TDPAG-----AVNKQGDSILCR 161
>ref|NP_002158.3| DNA-binding protein inhibitor ID-3 [Homo sapiens].
Length = 119
Score = 75.9 bits (185), Expect = 6e-14
Identities = 49/96 (51%), Positives = 61/96 (63%), Gaps = 1/96 (1%)
Frame = +3
Query: 192 EVVRCLSEQSVAISRCAG-GPGARLPPLLDEQQVNVLLYDMNGCYSRLKELVPTLPQNRK 368
E V CLSE+S+AI+R G GP A P L L DMN CYSRL+ELVP +P+ +
Sbjct: 12 EAVCCLSERSLAIARGRGKGPAAEEPLSL--------LDDMNHCYSRLRELVPGVPRGTQ 63
Query: 369 VSRVEILQHVIDYIWDLELELNSESQVGTQGGRGLP 476
+S+VEILQ VIDYI DL++ L +E G G LP
Sbjct: 64 LSQVEILQRVIDYILDLQVVL-AEPAPGPPDGPHLP 98
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 38,408,341
Number of extensions: 1074583
Number of successful extensions: 5788
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 5744
Number of HSP's successfully gapped: 5
Length of query: 341
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 238
Effective length of database: 14,901,872
Effective search space: 3546645536
Effective search space used: 3546645536
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002205
(1023 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_034625.1| DNA-binding protein inhibitor ID-1 [Mus musculu... 214 7e-56
Alignment gi|NP_034626.1| DNA-binding protein inhibitor ID-2 [Mus musculu... 94 2e-19
Alignment gi|NP_112443.1| DNA-binding protein inhibitor ID-4 [Mus musculu... 77 3e-14
Alignment gi|NP_032347.1| DNA-binding protein inhibitor ID-3 [Mus musculu... 75 1e-13
>ref|NP_034625.1| DNA-binding protein inhibitor ID-1 [Mus musculus].
Length = 148
Score = 214 bits (546), Expect = 7e-56
Identities = 118/154 (76%), Positives = 121/154 (78%)
Frame = +3
Query: 108 MKVXXXXXXXXXXPSCXXXXXXXXXXXXEVVRCLSEQSVAISRCAGGPGARLPPLLDEQQ 287
MKV PSC EVV LSEQSVAISRCAG RLP LLDEQQ
Sbjct: 1 MKVASGSAAAAAGPSCSLKAGRTAG---EVVLGLSEQSVAISRCAG---TRLPALLDEQQ 54
Query: 288 VNVLLYDMNGCYSRLKELVPTLPQNRKVSRVEILQHVIDYIWDLELELNSESQVGTQGGR 467
VNVLLYDMNGCYSRLKELVPTLPQNRKVS+VEILQHVIDYI DL+LELNSES+VGT GGR
Sbjct: 55 VNVLLYDMNGCYSRLKELVPTLPQNRKVSKVEILQHVIDYIRDLQLELNSESEVGTTGGR 114
Query: 468 GLPARAPLSTLNGEISALAAETACVPADDRILCR 569
GLP RAPLSTLNGEISALAAE ACVPADDRILCR
Sbjct: 115 GLPVRAPLSTLNGEISALAAEAACVPADDRILCR 148
>ref|NP_034626.1| DNA-binding protein inhibitor ID-2 [Mus musculus].
Length = 134
Score = 93.6 bits (231), Expect = 2e-19
Identities = 55/129 (42%), Positives = 82/129 (63%), Gaps = 9/129 (6%)
Frame = +3
Query: 207 LSEQSVAISRCAGGPGARLPPLLDEQQVNVLLYDMNGCYSRLKELVPTLPQNRKVSRVEI 386
LS+ S+ ISR P+ D LLY+MN CYS+LKELVP++PQN+KV+++EI
Sbjct: 15 LSDHSLGISRSK-------TPVDDPMS---LLYNMNDCYSKLKELVPSIPQNKKVTKMEI 64
Query: 387 LQHVIDYIWDLELELNSESQVGT----QGGRGLPARAPLSTLNGEISALAAETACVPA-- 548
LQHVIDYI DL++ L+S + + + G+ +R PL+TLN +IS L+ + + P+
Sbjct: 65 LQHVIDYILDLQIALDSHPTIVSLHHQRPGQNQASRTPLTTLNTDISILSLQASEFPSEL 124
Query: 549 ---DDRILC 566
D ++LC
Sbjct: 125 MSNDSKVLC 133
>ref|NP_112443.1| DNA-binding protein inhibitor ID-4 [Mus musculus].
Length = 161
Score = 76.6 bits (187), Expect = 3e-14
Identities = 53/142 (37%), Positives = 69/142 (48%), Gaps = 18/142 (12%)
Frame = +3
Query: 198 VRCLSEQ------SVAISRCAGGPGARLPPLLDEQQVNVLLYDMNGCYSRLKELVPTLPQ 359
+RCL+E S A + A + ++ L DMN CYSRL+ LVPT+P
Sbjct: 25 LRCLAEHGHSLGGSAAAAAAAAAARCKAAEAAADEPALCLQCDMNDCYSRLRRLVPTIPP 84
Query: 360 NRKVSRVEILQHVIDYIWDLELELNSESQVGTQ------------GGRGLPARAPLSTLN 503
N+KVS+VEILQHVIDYI DL+L L + + Q P R PL+ LN
Sbjct: 85 NKKVSKVEILQHVIDYILDLQLALETHPALLRQPPPPAPPLHPAGACPVAPPRTPLTALN 144
Query: 504 GEISALAAETACVPADDRILCR 569
+ + A D ILCR
Sbjct: 145 TDPAG-----AVNKQGDSILCR 161
>ref|NP_032347.1| DNA-binding protein inhibitor ID-3 [Mus musculus].
Length = 119
Score = 74.7 bits (182), Expect = 1e-13
Identities = 47/95 (49%), Positives = 60/95 (63%)
Frame = +3
Query: 192 EVVRCLSEQSVAISRCAGGPGARLPPLLDEQQVNVLLYDMNGCYSRLKELVPTLPQNRKV 371
E V CLSE+S+AI+R G + PL LL DMN CYSRL+ELVP +P+ ++
Sbjct: 12 EAVCCLSERSLAIARGRGKSPSTEEPLS-------LLDDMNHCYSRLRELVPGVPRGTQL 64
Query: 372 SRVEILQHVIDYIWDLELELNSESQVGTQGGRGLP 476
S+VEILQ VIDYI DL++ L +E G G LP
Sbjct: 65 SQVEILQRVIDYILDLQVVL-AEPAPGPPDGPHLP 98
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 32,188,383
Number of extensions: 878143
Number of successful extensions: 4293
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 4250
Number of HSP's successfully gapped: 4
Length of query: 341
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 239
Effective length of database: 12,553,887
Effective search space: 3000378993
Effective search space used: 3000378993
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002205
(1023 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003134425.2| PREDICTED: DNA-binding protein inhibitor ID-... 258 4e-69
Alignment gi|XP_003361826.1| PREDICTED: DNA-binding protein inhibitor ID-... 181 4e-46
Alignment gi|NP_001033054.1| DNA-binding protein inhibitor ID-2 [Sus scro... 93 2e-19
Alignment gi|NP_001230531.1| inhibitor of DNA binding 3, dominant negativ... 76 3e-14
Alignment gi|NP_001116602.1| DNA-binding protein inhibitor ID-4 [Sus scro... 75 6e-14
Alignment gi|XP_003359986.1| PREDICTED: hypothetical protein LOC100622963... 70 2e-12
>ref|XP_003134425.2| PREDICTED: DNA-binding protein inhibitor ID-1-like [Sus scrofa].
Length = 154
Score = 258 bits (659), Expect = 4e-69
Identities = 132/154 (85%), Positives = 132/154 (85%)
Frame = +3
Query: 108 MKVXXXXXXXXXXPSCXXXXXXXXXXXXEVVRCLSEQSVAISRCAGGPGARLPPLLDEQQ 287
MKV PSC EVVRCLSEQSVAISRCAGGPGARLPPLLDEQQ
Sbjct: 1 MKVASGSATATAGPSCALKAGKTAGGAGEVVRCLSEQSVAISRCAGGPGARLPPLLDEQQ 60
Query: 288 VNVLLYDMNGCYSRLKELVPTLPQNRKVSRVEILQHVIDYIWDLELELNSESQVGTQGGR 467
VNVLLYDMNGCYSRLKELVPTLPQNRKVSRVEILQHVIDYIWDLELELNSESQVGTQGGR
Sbjct: 61 VNVLLYDMNGCYSRLKELVPTLPQNRKVSRVEILQHVIDYIWDLELELNSESQVGTQGGR 120
Query: 468 GLPARAPLSTLNGEISALAAETACVPADDRILCR 569
GLPARAPLSTLNGEISALAAETACVPADDRILCR
Sbjct: 121 GLPARAPLSTLNGEISALAAETACVPADDRILCR 154
>ref|XP_003361826.1| PREDICTED: DNA-binding protein inhibitor ID-1-like, partial [Sus
scrofa].
Length = 103
Score = 181 bits (460), Expect = 4e-46
Identities = 99/126 (78%), Positives = 99/126 (78%)
Frame = +3
Query: 192 EVVRCLSEQSVAISRCAGGPGARLPPLLDEQQVNVLLYDMNGCYSRLKELVPTLPQNRKV 371
EVVRCLSEQSVAISRCA SRLKELVPTLPQNRKV
Sbjct: 4 EVVRCLSEQSVAISRCAD--------------------------SRLKELVPTLPQNRKV 37
Query: 372 SRVEILQHVIDYIWDLELELNSESQVGTQGGRGLPARAPLSTLNGEISALAAETACVPAD 551
SRVEILQHVIDYIWDLELELNSESQVGTQGGRGLPARAPLSTLNGEISALAAETACVPAD
Sbjct: 38 SRVEILQHVIDYIWDLELELNSESQVGTQGGRGLPARAPLSTLNGEISALAAETACVPAD 97
Query: 552 DRILCR 569
DRILCR
Sbjct: 98 DRILCR 103
>ref|NP_001033054.1| DNA-binding protein inhibitor ID-2 [Sus scrofa].
Length = 134
Score = 93.2 bits (230), Expect = 2e-19
Identities = 56/129 (43%), Positives = 81/129 (62%), Gaps = 9/129 (6%)
Frame = +3
Query: 207 LSEQSVAISRCAGGPGARLPPLLDEQQVNVLLYDMNGCYSRLKELVPTLPQNRKVSRVEI 386
LS+ S+ ISR P+ D LLY+MN CYS+LKELVP++PQN+KVS++EI
Sbjct: 15 LSDHSLGISRSK-------TPVDDPMS---LLYNMNDCYSKLKELVPSIPQNKKVSKMEI 64
Query: 387 LQHVIDYIWDLELELNSESQVGT----QGGRGLPARAPLSTLNGEISALAAETACVP--- 545
LQHVIDYI DL++ L+S + + + G+ +R PL+TLN +IS L+ + + P
Sbjct: 65 LQHVIDYILDLQIALDSHPTIVSLHHQRPGQSQASRTPLTTLNTDISILSLQASEFPSEL 124
Query: 546 --ADDRILC 566
+D + LC
Sbjct: 125 MSSDSKALC 133
>ref|NP_001230531.1| inhibitor of DNA binding 3, dominant negative helix-loop-helix
protein [Sus scrofa].
Length = 119
Score = 75.9 bits (185), Expect = 3e-14
Identities = 49/96 (51%), Positives = 61/96 (63%), Gaps = 1/96 (1%)
Frame = +3
Query: 192 EVVRCLSEQSVAISRCAG-GPGARLPPLLDEQQVNVLLYDMNGCYSRLKELVPTLPQNRK 368
E V CLSE+S+AI+R G GP A P L L DMN CYSRL+ELVP +P+ +
Sbjct: 12 EAVCCLSERSLAIARGRGKGPAAEEPLSL--------LDDMNHCYSRLRELVPGVPRGTQ 63
Query: 369 VSRVEILQHVIDYIWDLELELNSESQVGTQGGRGLP 476
+S+VEILQ VIDYI DL++ L +E G G LP
Sbjct: 64 LSQVEILQRVIDYILDLQVVL-AEPAPGPPDGPHLP 98
>ref|NP_001116602.1| DNA-binding protein inhibitor ID-4 [Sus scrofa].
Length = 161
Score = 75.1 bits (183), Expect = 6e-14
Identities = 52/142 (36%), Positives = 68/142 (47%), Gaps = 18/142 (12%)
Frame = +3
Query: 198 VRCLSEQ------SVAISRCAGGPGARLPPLLDEQQVNVLLYDMNGCYSRLKELVPTLPQ 359
+RCL+E S A + A + ++ L DMN CYSRL+ LVPT+P
Sbjct: 25 LRCLAEHGHSLGGSAAAAAAAAAARCKAAEAAADEPALCLQCDMNDCYSRLRRLVPTIPP 84
Query: 360 NRKVSRVEILQHVIDYIWDLELELNSESQVGTQGG------------RGLPARAPLSTLN 503
N+KVS+VEIL HVIDYI DL+L L + + Q P R PL+ LN
Sbjct: 85 NKKVSKVEILPHVIDYILDLQLALETHPALLRQPPPPAPPHHPAGTCPAAPPRTPLTALN 144
Query: 504 GEISALAAETACVPADDRILCR 569
+ + A D ILCR
Sbjct: 145 TDPAG-----AVNKQGDSILCR 161
>ref|XP_003359986.1| PREDICTED: hypothetical protein LOC100622963 [Sus scrofa].
Length = 46
Score = 70.1 bits (170), Expect = 2e-12
Identities = 37/46 (80%), Positives = 37/46 (80%)
Frame = -3
Query: 229 MATLCSERQRTTSPAPPAVLPAFSAQLGXXXXXXXXXATFMILASG 92
MATLCSERQRTTSPAPPAVLPAFSAQLG ATFMILASG
Sbjct: 1 MATLCSERQRTTSPAPPAVLPAFSAQLGPAVAVALPLATFMILASG 46
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 24,589,539
Number of extensions: 727192
Number of successful extensions: 3960
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 3927
Number of HSP's successfully gapped: 6
Length of query: 341
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 241
Effective length of database: 8,854,232
Effective search space: 2133869912
Effective search space used: 2133869912
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002205
(1023 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr17 1045 0.0
gb|GL895495.2| Sus scrofa unplaced genomic scaffold ChrUScaf3379 139 3e-30
Sscrofa_Chr03 68 1e-08
>Sscrofa_Chr17
|| Length = 69701581
Score = 1045 bits (527), Expect = 0.0
Identities = 527/527 (100%)
Strand = Plus / Plus
Query: 4 gcacttttcacggcagtctctctaccgctgcgatctcgccctagagcccaggagtccgcc 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40187158 gcacttttcacggcagtctctctaccgctgcgatctcgccctagagcccaggagtccgcc 40187217
Query: 64 tcctctgtccgcttcggtttatctctcaccccgacgcaagaatcatgaaggtcgccagtg 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40187218 tcctctgtccgcttcggtttatctctcaccccgacgcaagaatcatgaaggtcgccagtg 40187277
Query: 124 gcagcgccacggccaccgcgggccccagctgcgcgctgaaggccggcaagacggcgggcg 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40187278 gcagcgccacggccaccgcgggccccagctgcgcgctgaaggccggcaagacggcgggcg 40187337
Query: 184 gcgcgggcgaggtggtgcgctgcctctccgagcagagcgtggccatctcgcgctgtgcgg 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40187338 gcgcgggcgaggtggtgcgctgcctctccgagcagagcgtggccatctcgcgctgtgcgg 40187397
Query: 244 gtggccccggggcacgcctgcctcccctactcgacgaacagcaggtgaacgtgctcctct 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40187398 gtggccccggggcacgcctgcctcccctactcgacgaacagcaggtgaacgtgctcctct 40187457
Query: 304 acgacatgaacggctgctattctcgcctcaaggagctggtgcccactctgccccagaacc 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40187458 acgacatgaacggctgctattctcgcctcaaggagctggtgcccactctgccccagaacc 40187517
Query: 364 gcaaggtgagcagggtggagatcctccagcatgtcatcgactacatctgggacctggagt 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40187518 gcaaggtgagcagggtggagatcctccagcatgtcatcgactacatctgggacctggagt 40187577
Query: 424 tggagctgaactcggaatcccaagttgggacccaaggcggccggggactccccgcccggg 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40187578 tggagctgaactcggaatcccaagttgggacccaaggcggccggggactccccgcccggg 40187637
Query: 484 ctccgctcagcaccctcaacggcgaaatcagcgccctggcggcagag 530
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40187638 ctccgctcagcaccctcaacggcgaaatcagcgccctggcggcagag 40187684
Score = 819 bits (413), Expect = 0.0
Identities = 413/413 (100%)
Strand = Plus / Plus
Query: 529 agacagcatgtgttccagcggacgatcgcatcttgtgtcgctgaagcgccgcccttgggg 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40187910 agacagcatgtgttccagcggacgatcgcatcttgtgtcgctgaagcgccgcccttgggg 40187969
Query: 589 acctgcggaccccagccctccagggggcgagagaaatcagtgttctctggtccttccaag 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40187970 acctgcggaccccagccctccagggggcgagagaaatcagtgttctctggtccttccaag 40188029
Query: 649 cacctcgccatagctggggagaacaagacagatcggcggctgttgggcgcttgctagatc 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40188030 cacctcgccatagctggggagaacaagacagatcggcggctgttgggcgcttgctagatc 40188089
Query: 709 cagcccagggctgggggtactgatgagggcaggctgaccctcccttctcactcaccagcc 768
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40188090 cagcccagggctgggggtactgatgagggcaggctgaccctcccttctcactcaccagcc 40188149
Query: 769 accagagacttgggggagttccccccatgtgtttctattttttgaaaagcagacatttta 828
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40188150 accagagacttgggggagttccccccatgtgtttctattttttgaaaagcagacatttta 40188209
Query: 829 aaaaatggtcacgtttggtgcttctcagatttctgaggaaattaattgctttgtattgta 888
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40188210 aaaaatggtcacgtttggtgcttctcagatttctgaggaaattaattgctttgtattgta 40188269
Query: 889 tattacaatgatcaccgactgagaatattgttttacaatagttctgtggggtg 941
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40188270 tattacaatgatcaccgactgagaatattgttttacaatagttctgtggggtg 40188322
>gb|GL895495.2| Sus scrofa unplaced genomic scaffold ChrUScaf3379
Length = 952
Score = 139 bits (70), Expect = 3e-30
Identities = 70/70 (100%)
Strand = Plus / Minus
Query: 178 cgggcggcgcgggcgaggtggtgcgctgcctctccgagcagagcgtggccatctcgcgct 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 952 cgggcggcgcgggcgaggtggtgcgctgcctctccgagcagagcgtggccatctcgcgct 893
Query: 238 gtgcgggtgg 247
||||||||||
Sbjct: 892 gtgcgggtgg 883
>Sscrofa_Chr03
|| Length = 144787322
Score = 67.9 bits (34), Expect = 1e-08
Identities = 76/90 (84%)
Strand = Plus / Minus
Query: 330 ctcaaggagctggtgcccactctgccccagaaccgcaaggtgagcagggtggagatcctc 389
||||||||||||||||||| | || |||||| |||||||||| | |||| |||||
Sbjct: 135804029 ctcaaggagctggtgcccagcatccctcagaacaagaaggtgagcaagatggaaatcctg 135803970
Query: 390 cagcatgtcatcgactacatctgggacctg 419
||||| |||||||||||||||| |||||||
Sbjct: 135803969 cagcacgtcatcgactacatcttggacctg 135803940
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 25,951,128
Number of extensions: 611
Number of successful extensions: 611
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 610
Number of HSP's successfully gapped: 5
Length of query: 1023
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1002
Effective length of database: 2,808,413,156
Effective search space: 2814029982312
Effective search space used: 2814029982312
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)