Animal-Genome cDNA 20110601C-002293


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002293
         (1089 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001020486.1| 40S ribosomal protein S25 [Bos taurus].           147   1e-35
Alignment   gi|XP_002686043.1| PREDICTED: ribosomal protein S25-like [Bos t...   147   1e-35
Alignment   gi|XP_001253386.1| PREDICTED: ribosomal protein S25-like isofor...   147   1e-35
Alignment   gi|XP_001790348.1| PREDICTED: ribosomal protein S25-like isofor...   147   1e-35
Alignment   gi|XP_001253641.2| PREDICTED: ribosomal protein S25-like [Bos t...   137   1e-32
Alignment   gi|XP_002707790.1| PREDICTED: ribosomal protein S25-like [Bos t...   134   2e-31
Alignment   gi|XP_002696233.1| PREDICTED: ribosomal protein S25-like [Bos t...   132   4e-31
Alignment   gi|XP_001253910.1| PREDICTED: ribosomal protein S25-like [Bos t...   132   4e-31

>ref|NP_001020486.1| 40S ribosomal protein S25 [Bos taurus].
          Length = 125

 Score =  147 bits (372), Expect = 1e-35
 Identities = 81/114 (71%), Positives = 81/114 (71%)
 Frame = +1

Query: 64  MPPXXXXXXXXXXXXXXXXXXPVNXXXXXXXXXXXXXXXVRDKLNNLVLFDKATYDKLCK 243
           MPP                  PVN               VRDKLNNLVLFDKATYDKLCK
Sbjct: 1   MPPKDDKKKKDAGKSAKKDKDPVNKSGGKAKKKKWSKGKVRDKLNNLVLFDKATYDKLCK 60

Query: 244 EVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKLVSKHRAQVIYTRNTK 405
           EVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKLVSKHRAQVIYTRNTK
Sbjct: 61  EVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKLVSKHRAQVIYTRNTK 114


>ref|XP_002686043.1| PREDICTED: ribosomal protein S25-like [Bos taurus].
          Length = 125

 Score =  147 bits (372), Expect = 1e-35
 Identities = 81/114 (71%), Positives = 81/114 (71%)
 Frame = +1

Query: 64  MPPXXXXXXXXXXXXXXXXXXPVNXXXXXXXXXXXXXXXVRDKLNNLVLFDKATYDKLCK 243
           MPP                  PVN               VRDKLNNLVLFDKATYDKLCK
Sbjct: 1   MPPKDDKKKKDAGKSAKKDKDPVNKSGGKAKKKKWSKGKVRDKLNNLVLFDKATYDKLCK 60

Query: 244 EVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKLVSKHRAQVIYTRNTK 405
           EVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKLVSKHRAQVIYTRNTK
Sbjct: 61  EVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKLVSKHRAQVIYTRNTK 114


>ref|XP_001253386.1| PREDICTED: ribosomal protein S25-like isoform 1 [Bos taurus].
          Length = 125

 Score =  147 bits (372), Expect = 1e-35
 Identities = 81/114 (71%), Positives = 81/114 (71%)
 Frame = +1

Query: 64  MPPXXXXXXXXXXXXXXXXXXPVNXXXXXXXXXXXXXXXVRDKLNNLVLFDKATYDKLCK 243
           MPP                  PVN               VRDKLNNLVLFDKATYDKLCK
Sbjct: 1   MPPKDDKKKKDAGKSAKKDKDPVNKSGGKAKKKKWSKGKVRDKLNNLVLFDKATYDKLCK 60

Query: 244 EVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKLVSKHRAQVIYTRNTK 405
           EVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKLVSKHRAQVIYTRNTK
Sbjct: 61  EVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKLVSKHRAQVIYTRNTK 114


>ref|XP_001790348.1| PREDICTED: ribosomal protein S25-like isoform 1 [Bos taurus].
          Length = 125

 Score =  147 bits (372), Expect = 1e-35
 Identities = 81/114 (71%), Positives = 81/114 (71%)
 Frame = +1

Query: 64  MPPXXXXXXXXXXXXXXXXXXPVNXXXXXXXXXXXXXXXVRDKLNNLVLFDKATYDKLCK 243
           MPP                  PVN               VRDKLNNLVLFDKATYDKLCK
Sbjct: 1   MPPKDDKKKKDAGKSAKKDKDPVNKSGGKAKKKKWSKGKVRDKLNNLVLFDKATYDKLCK 60

Query: 244 EVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKLVSKHRAQVIYTRNTK 405
           EVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKLVSKHRAQVIYTRNTK
Sbjct: 61  EVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKLVSKHRAQVIYTRNTK 114


>ref|XP_001253641.2| PREDICTED: ribosomal protein S25-like [Bos taurus].
          Length = 124

 Score =  137 bits (346), Expect = 1e-32
 Identities = 71/75 (94%), Positives = 72/75 (96%)
 Frame = +1

Query: 181 VRDKLNNLVLFDKATYDKLCKEVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKL 360
           V DKLNNLVLFDKATYDKLC+EVPNYKLITPAVVSERLKI GS ARAALQELLSKGLIKL
Sbjct: 39  VWDKLNNLVLFDKATYDKLCEEVPNYKLITPAVVSERLKIHGSQARAALQELLSKGLIKL 98

Query: 361 VSKHRAQVIYTRNTK 405
           VSKHRAQVIYTRNTK
Sbjct: 99  VSKHRAQVIYTRNTK 113


>ref|XP_002707790.1| PREDICTED: ribosomal protein S25-like [Bos taurus].
          Length = 124

 Score =  134 bits (336), Expect = 2e-31
 Identities = 69/75 (92%), Positives = 71/75 (94%)
 Frame = +1

Query: 181 VRDKLNNLVLFDKATYDKLCKEVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKL 360
           V DKLNNLVLFDKATYDKLC+EVPNYKLITPAVVSERLKI GS ARAALQELLSKGLI+L
Sbjct: 39  VWDKLNNLVLFDKATYDKLCEEVPNYKLITPAVVSERLKIHGSQARAALQELLSKGLIEL 98

Query: 361 VSKHRAQVIYTRNTK 405
           VSKHRA VIYTRNTK
Sbjct: 99  VSKHRAXVIYTRNTK 113


>ref|XP_002696233.1| PREDICTED: ribosomal protein S25-like [Bos taurus].
          Length = 123

 Score =  132 bits (333), Expect = 4e-31
 Identities = 70/75 (93%), Positives = 71/75 (94%)
 Frame = +1

Query: 181 VRDKLNNLVLFDKATYDKLCKEVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKL 360
           VRDKLNNLVLFDKA YDKLCK VP+YKLITPAVVSERLKI GSLARAALQELLSKGLIKL
Sbjct: 39  VRDKLNNLVLFDKAAYDKLCK-VPSYKLITPAVVSERLKIHGSLARAALQELLSKGLIKL 97

Query: 361 VSKHRAQVIYTRNTK 405
           VSKHR QVIYTRNTK
Sbjct: 98  VSKHRVQVIYTRNTK 112


>ref|XP_001253910.1| PREDICTED: ribosomal protein S25-like [Bos taurus].
          Length = 123

 Score =  132 bits (333), Expect = 4e-31
 Identities = 70/75 (93%), Positives = 71/75 (94%)
 Frame = +1

Query: 181 VRDKLNNLVLFDKATYDKLCKEVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKL 360
           VRDKLNNLVLFDKA YDKLCK VP+YKLITPAVVSERLKI GSLARAALQELLSKGLIKL
Sbjct: 39  VRDKLNNLVLFDKAAYDKLCK-VPSYKLITPAVVSERLKIHGSLARAALQELLSKGLIKL 97

Query: 361 VSKHRAQVIYTRNTK 405
           VSKHR QVIYTRNTK
Sbjct: 98  VSKHRVQVIYTRNTK 112


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 38,104,427
Number of extensions: 1188776
Number of successful extensions: 5001
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 4907
Number of HSP's successfully gapped: 8
Length of query: 363
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 259
Effective length of database: 14,240,222
Effective search space: 3688217498
Effective search space used: 3688217498
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002293
         (1089 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_536549.2| PREDICTED: similar to 40S ribosomal protein S25...   151   9e-37
Alignment   gi|XP_851987.1| PREDICTED: similar to 40S ribosomal protein S25...    73   5e-13

>ref|XP_536549.2| PREDICTED: similar to 40S ribosomal protein S25 [Canis familiaris].
          Length = 199

 Score =  151 bits (382), Expect = 9e-37
 Identities = 83/116 (71%), Positives = 83/116 (71%)
 Frame = +1

Query: 58  FAMPPXXXXXXXXXXXXXXXXXXPVNXXXXXXXXXXXXXXXVRDKLNNLVLFDKATYDKL 237
           FAMPP                  PVN               VRDKLNNLVLFDKATYDKL
Sbjct: 73  FAMPPKDDKKKKDAGKSAKKDKDPVNKSGGKAKKKKWSKGKVRDKLNNLVLFDKATYDKL 132

Query: 238 CKEVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKLVSKHRAQVIYTRNTK 405
           CKEVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKLVSKHRAQVIYTRNTK
Sbjct: 133 CKEVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKLVSKHRAQVIYTRNTK 188


>ref|XP_851987.1| PREDICTED: similar to 40S ribosomal protein S25 [Canis familiaris].
          Length = 92

 Score = 72.8 bits (177), Expect = 5e-13
 Identities = 38/43 (88%), Positives = 40/43 (93%)
 Frame = +1

Query: 277 VVSERLKIRGSLARAALQELLSKGLIKLVSKHRAQVIYTRNTK 405
           V  +RLKI+GSLARAALQELLSKGLIKLVS HRAQVIYTRNTK
Sbjct: 39  VRDKRLKIQGSLARAALQELLSKGLIKLVSNHRAQVIYTRNTK 81


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 39,314,700
Number of extensions: 1135283
Number of successful extensions: 5385
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5317
Number of HSP's successfully gapped: 2
Length of query: 363
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 259
Effective length of database: 15,407,560
Effective search space: 3990558040
Effective search space used: 3990558040
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002293
         (1089 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001019.1| 40S ribosomal protein S25 [Homo sapiens].            147   1e-35

>ref|NP_001019.1| 40S ribosomal protein S25 [Homo sapiens].
          Length = 125

 Score =  147 bits (372), Expect = 1e-35
 Identities = 81/114 (71%), Positives = 81/114 (71%)
 Frame = +1

Query: 64  MPPXXXXXXXXXXXXXXXXXXPVNXXXXXXXXXXXXXXXVRDKLNNLVLFDKATYDKLCK 243
           MPP                  PVN               VRDKLNNLVLFDKATYDKLCK
Sbjct: 1   MPPKDDKKKKDAGKSAKKDKDPVNKSGGKAKKKKWSKGKVRDKLNNLVLFDKATYDKLCK 60

Query: 244 EVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKLVSKHRAQVIYTRNTK 405
           EVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKLVSKHRAQVIYTRNTK
Sbjct: 61  EVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKLVSKHRAQVIYTRNTK 114


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 38,077,478
Number of extensions: 1079612
Number of successful extensions: 5154
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5049
Number of HSP's successfully gapped: 1
Length of query: 363
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 259
Effective length of database: 14,868,908
Effective search space: 3851047172
Effective search space used: 3851047172
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002293
         (1089 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_077228.1| 40S ribosomal protein S25 [Mus musculus].            147   1e-35
Alignment   gi|XP_003085886.1| PREDICTED: 40S ribosomal protein S25-like [M...   141   1e-33
Alignment   gi|XP_899588.1| PREDICTED: 40S ribosomal protein S25-like [Mus ...   140   2e-33
Alignment   gi|XP_144599.1| PREDICTED: 40S ribosomal protein S25-like [Mus ...   138   7e-33
Alignment   gi|XP_913389.3| PREDICTED: 40S ribosomal protein S25-like [Mus ...   115   6e-26

>ref|NP_077228.1| 40S ribosomal protein S25 [Mus musculus].
          Length = 125

 Score =  147 bits (372), Expect = 1e-35
 Identities = 81/114 (71%), Positives = 81/114 (71%)
 Frame = +1

Query: 64  MPPXXXXXXXXXXXXXXXXXXPVNXXXXXXXXXXXXXXXVRDKLNNLVLFDKATYDKLCK 243
           MPP                  PVN               VRDKLNNLVLFDKATYDKLCK
Sbjct: 1   MPPKDDKKKKDAGKSAKKDKDPVNKSGGKAKKKKWSKGKVRDKLNNLVLFDKATYDKLCK 60

Query: 244 EVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKLVSKHRAQVIYTRNTK 405
           EVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKLVSKHRAQVIYTRNTK
Sbjct: 61  EVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKLVSKHRAQVIYTRNTK 114


>ref|XP_003085886.1| PREDICTED: 40S ribosomal protein S25-like [Mus musculus].
          Length = 125

 Score =  141 bits (355), Expect = 1e-33
 Identities = 78/114 (68%), Positives = 78/114 (68%)
 Frame = +1

Query: 64  MPPXXXXXXXXXXXXXXXXXXPVNXXXXXXXXXXXXXXXVRDKLNNLVLFDKATYDKLCK 243
           MPP                  PVN               VRDKLNNLVLFDKATYDKLCK
Sbjct: 1   MPPKDDKKKKDAGKSAKKDKDPVNKSGGKAKKKKWSKGKVRDKLNNLVLFDKATYDKLCK 60

Query: 244 EVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKLVSKHRAQVIYTRNTK 405
           EVPNYKLITPAVVSERLKIR SLARAALQELLSKGLIKLVSKHRAQVIY RN K
Sbjct: 61  EVPNYKLITPAVVSERLKIRSSLARAALQELLSKGLIKLVSKHRAQVIYPRNAK 114


>ref|XP_899588.1| PREDICTED: 40S ribosomal protein S25-like [Mus musculus].
          Length = 125

 Score =  140 bits (352), Expect = 2e-33
 Identities = 77/114 (67%), Positives = 78/114 (68%)
 Frame = +1

Query: 64  MPPXXXXXXXXXXXXXXXXXXPVNXXXXXXXXXXXXXXXVRDKLNNLVLFDKATYDKLCK 243
           MPP                  PVN               VRDKLNNLVLFDKATYDKLCK
Sbjct: 1   MPPKDDKKKKDAGKSAKKDKDPVNKSGGKAKKKKWSKGKVRDKLNNLVLFDKATYDKLCK 60

Query: 244 EVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKLVSKHRAQVIYTRNTK 405
           EVPNYKLITPAVVS+RLKIR SLARAALQELLSKGLIKLVSKHRAQVIY RN K
Sbjct: 61  EVPNYKLITPAVVSQRLKIRSSLARAALQELLSKGLIKLVSKHRAQVIYPRNAK 114


>ref|XP_144599.1| PREDICTED: 40S ribosomal protein S25-like [Mus musculus].
          Length = 125

 Score =  138 bits (348), Expect = 7e-33
 Identities = 77/114 (67%), Positives = 78/114 (68%)
 Frame = +1

Query: 64  MPPXXXXXXXXXXXXXXXXXXPVNXXXXXXXXXXXXXXXVRDKLNNLVLFDKATYDKLCK 243
           MPP                  PVN               VRDKLNNLVLFDKATYDKLCK
Sbjct: 1   MPPKDDKKKKDAGKSAKKDKDPVNKSGGKAKKKKWSKGKVRDKLNNLVLFDKATYDKLCK 60

Query: 244 EVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKLVSKHRAQVIYTRNTK 405
           EV NYKLITPAVVSERLKI  SLARAALQELLSKGL+KLVSKHRAQVIYTRNTK
Sbjct: 61  EVQNYKLITPAVVSERLKICSSLARAALQELLSKGLLKLVSKHRAQVIYTRNTK 114


>ref|XP_913389.3| PREDICTED: 40S ribosomal protein S25-like [Mus musculus].
          Length = 127

 Score =  115 bits (288), Expect = 6e-26
 Identities = 62/75 (82%), Positives = 67/75 (89%)
 Frame = +1

Query: 181 VRDKLNNLVLFDKATYDKLCKEVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKL 360
           VRDKL+NLVLFD      LCKEV NYKLITP++VSERLKI GSLARAALQ+LLSKGLIKL
Sbjct: 38  VRDKLDNLVLFDN-----LCKEVSNYKLITPSMVSERLKIPGSLARAALQKLLSKGLIKL 92

Query: 361 VSKHRAQVIYTRNTK 405
           VSKHRAQ+IYTRNTK
Sbjct: 93  VSKHRAQMIYTRNTK 107


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 32,036,273
Number of extensions: 892419
Number of successful extensions: 4004
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 3902
Number of HSP's successfully gapped: 5
Length of query: 363
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 260
Effective length of database: 12,523,851
Effective search space: 3256201260
Effective search space used: 3256201260
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002293
         (1089 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_003129968.1| PREDICTED: 40S ribosomal protein S25-like is...   147   8e-36
Alignment   gi|XP_003129967.1| PREDICTED: 40S ribosomal protein S25-like is...   147   8e-36
Alignment   gi|XP_003130248.1| PREDICTED: 40S ribosomal protein S25-like [S...   133   2e-31
Alignment   gi|XP_003357518.1| PREDICTED: 40S ribosomal protein S25-like [S...   133   2e-31
Alignment   gi|XP_003361427.1| PREDICTED: hypothetical protein LOC100624912...    78   8e-15

>ref|XP_003129968.1| PREDICTED: 40S ribosomal protein S25-like isoform 2 [Sus scrofa].
          Length = 125

 Score =  147 bits (372), Expect = 8e-36
 Identities = 81/114 (71%), Positives = 81/114 (71%)
 Frame = +1

Query: 64  MPPXXXXXXXXXXXXXXXXXXPVNXXXXXXXXXXXXXXXVRDKLNNLVLFDKATYDKLCK 243
           MPP                  PVN               VRDKLNNLVLFDKATYDKLCK
Sbjct: 1   MPPKDDKKKKDAGKSAKKDKDPVNKSGGKAKKKKWSKGKVRDKLNNLVLFDKATYDKLCK 60

Query: 244 EVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKLVSKHRAQVIYTRNTK 405
           EVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKLVSKHRAQVIYTRNTK
Sbjct: 61  EVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKLVSKHRAQVIYTRNTK 114


>ref|XP_003129967.1| PREDICTED: 40S ribosomal protein S25-like isoform 1 [Sus scrofa].
          Length = 125

 Score =  147 bits (372), Expect = 8e-36
 Identities = 81/114 (71%), Positives = 81/114 (71%)
 Frame = +1

Query: 64  MPPXXXXXXXXXXXXXXXXXXPVNXXXXXXXXXXXXXXXVRDKLNNLVLFDKATYDKLCK 243
           MPP                  PVN               VRDKLNNLVLFDKATYDKLCK
Sbjct: 1   MPPKDDKKKKDAGKSAKKDKDPVNKSGGKAKKKKWSKGKVRDKLNNLVLFDKATYDKLCK 60

Query: 244 EVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKLVSKHRAQVIYTRNTK 405
           EVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKLVSKHRAQVIYTRNTK
Sbjct: 61  EVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKLVSKHRAQVIYTRNTK 114


>ref|XP_003130248.1| PREDICTED: 40S ribosomal protein S25-like [Sus scrofa].
          Length = 143

 Score =  133 bits (334), Expect = 2e-31
 Identities = 74/104 (71%), Positives = 80/104 (76%)
 Frame = +1

Query: 181 VRDKLNNLVLFDKATYDKLCKEVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKL 360
           V DKLNNLVL DK TYDKLCK+VPNYKLITPAV+S+RLKIRGSLARAA QELLSKGLIKL
Sbjct: 28  VWDKLNNLVLTDKVTYDKLCKQVPNYKLITPAVISQRLKIRGSLARAAPQELLSKGLIKL 87

Query: 361 VSKHRAQVIYTRNTKXXXXXXXXXXXXXXXXNCTLYILKNKTLI 492
           VSKHR QVIYTRNTK                +  L ILKNK+L+
Sbjct: 88  VSKHRVQVIYTRNTK---SGDAPAAGEFMKRSHQLNILKNKSLL 128


>ref|XP_003357518.1| PREDICTED: 40S ribosomal protein S25-like [Sus scrofa].
          Length = 143

 Score =  133 bits (334), Expect = 2e-31
 Identities = 74/104 (71%), Positives = 80/104 (76%)
 Frame = +1

Query: 181 VRDKLNNLVLFDKATYDKLCKEVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKL 360
           V DKLNNLVL DK TYDKLCK+VPNYKLITPAV+S+RLKIRGSLARAA QELLSKGLIKL
Sbjct: 28  VWDKLNNLVLTDKVTYDKLCKQVPNYKLITPAVISQRLKIRGSLARAAPQELLSKGLIKL 87

Query: 361 VSKHRAQVIYTRNTKXXXXXXXXXXXXXXXXNCTLYILKNKTLI 492
           VSKHR QVIYTRNTK                +  L ILKNK+L+
Sbjct: 88  VSKHRVQVIYTRNTK---SGDAPAAGEFMKRSHQLNILKNKSLL 128


>ref|XP_003361427.1| PREDICTED: hypothetical protein LOC100624912 [Sus scrofa].
          Length = 196

 Score = 78.2 bits (191), Expect = 8e-15
 Identities = 43/83 (51%), Positives = 47/83 (56%)
 Frame = +1

Query: 64  MPPXXXXXXXXXXXXXXXXXXPVNXXXXXXXXXXXXXXXVRDKLNNLVLFDKATYDKLCK 243
           MPP                  PVN               VRDK+N+LVLFDK TYDKLCK
Sbjct: 1   MPPKDNNKKKDARKLTKKDKDPVNKPGDKAEKKKWSKGKVRDKVNSLVLFDKVTYDKLCK 60

Query: 244 EVPNYKLITPAVVSERLKIRGSL 312
           EV NYKLITPAVVSE+L+I GSL
Sbjct: 61  EVSNYKLITPAVVSEKLRICGSL 83


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 25,739,531
Number of extensions: 935320
Number of successful extensions: 3265
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 3220
Number of HSP's successfully gapped: 5
Length of query: 363
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 263
Effective length of database: 8,854,232
Effective search space: 2328663016
Effective search space used: 2328663016
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002293
         (1089 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_ChrX                                                          763   0.0  
Sscrofa_Chr07                                                         759   0.0  
Sscrofa_Chr03                                                         626   e-177
Sscrofa_Chr10                                                         615   e-173
Sscrofa_Chr18                                                         587   e-165
Sscrofa_Chr13                                                         571   e-160
Sscrofa_Chr09                                                         422   e-115
gb|JH118744.1| Sus scrofa unplaced genomic scaffold ChrUScaf2198      359   2e-96
Sscrofa_Chr06                                                         299   2e-78
gb|GL892484.1| Sus scrofa unplaced genomic scaffold chrU_scaffol...   293   1e-76

>Sscrofa_ChrX 
||          Length = 144288218

 Score =  763 bits (385), Expect = 0.0
 Identities = 465/489 (95%), Gaps = 7/489 (1%)
 Strand = Plus / Plus

                                                                             
Query: 6         tttctgtccgacatcttagcgaggaggcactact--ggtagctgctctcccggcttcgct 63
                 |||||||| ||||||||||| || ||||||| ||  |||||||||||||||||||| |||
Sbjct: 108384186 tttctgtctgacatcttagcaagtaggcactcctctggtagctgctctcccggctttgct 108384245

                                                                             
Query: 64        atgccgcccaaggacgacaagaagaagaaagatgccggaaagtcggccaagaaagacaaa 123
                  |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 108384246 ttgccgcccaaggacgacaagaagaagaaagatgccggaaagttggccaagaaagacaaa 108384305

                                                                             
Query: 124       gacccagtgaacaaatctgggggcaaggccaaaaagaagaagtggtccaaaggcaaagtt 183
                 |||||||||||||||||||||||||||||||||||||||   ||||||||||||||| ||
Sbjct: 108384306 gacccagtgaacaaatctgggggcaaggccaaaaagaag---tggtccaaaggcaaaatt 108384362

                                                                             
Query: 184       cgggacaagctcaataacctagtcttgtttgacaaagcgacatatgacaaactctgtaaa 243
                 |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 108384363 cgggacaagctcaataatttagtcttgtttgacaaagcgacatatgacaaactctgtaaa 108384422

                                                                             
Query: 244       gaagttcccaactataagcttataactccagctgttgtctctgagagactgaagattcgt 303
                 ||||||||||||||||||||||| ||||||||||||||||||||||  ||||||||||||
Sbjct: 108384423 gaagttcccaactataagcttattactccagctgttgtctctgaga--ctgaagattcgt 108384480

                                                                             
Query: 304       ggttctctggccagggcagcccttcaggaactcctgagcaaaggacttattaaactggtt 363
                 ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct: 108384481 ggttctctggccagggcagcccttcaggagctcttgagcaaaggacttattaaactggtt 108384540

                                                                             
Query: 364       tcaaagcacagagctcaagtaatttacacccgaaataccaagggtggagatgccccagct 423
                 ||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct: 108384541 tcaaagcacagagctcaagtagtttacacctgaaataccaagggtggagatgccccagct 108384600

                                                                             
Query: 424       gctggagaagatgcataaacaggtccaaccaactgtacactgtacattttgaaaaataaa 483
                 |||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct: 108384601 gctggagaagatgcataaacaggtcccatcaactgtacactgtacattttgaaaaataaa 108384660

                          
Query: 484       actttaatt 492
                 |||||||||
Sbjct: 108384661 actttaatt 108384669



 Score =  287 bits (145), Expect = 6e-75
 Identities = 304/355 (85%), Gaps = 4/355 (1%)
 Strand = Plus / Plus

                                                                            
Query: 85       aagaagaaagatgccggaaagtcggccaagaaagacaaagacccagtgaacaaatctggg 144
                ||||||||||| ||| |||| | || |||||||||||||||| ||| | |||||| ||||
Sbjct: 85408146 aagaagaaagacgccagaaaattggtcaagaaagacaaagactcaggggacaaatgtggg 85408205

                                                                            
Query: 145      ggcaaggccaaaaagaagaagtggtccaaaggcaaagttcgggacaagctcaataaccta 204
                |||||||||||||| |||||||||||||||| |||||||  |||||||||||||||||||
Sbjct: 85408206 ggcaaggccaaaaataagaagtggtccaaagacaaagtttaggacaagctcaataaccta 85408265

                                                                            
Query: 205      gtcttgtttgacaaagcgacatatgacaaactctgtaaagaagttcccaactataagctt 264
                | ||||||||||||||| ||||||||| ||    |||| |||||||||||| ||||||||
Sbjct: 85408266 gccttgtttgacaaagcaacatatgactaa--tggtaaggaagttcccaaccataagctt 85408323

                                                                            
Query: 265      ataactccagctgttgtctctgagagactgaagattcgtggttctctggccagggcagcc 324
                ||||| |||| ||| |||||||||||||  || ||| ||||||| |||||    || |||
Sbjct: 85408324 ataaccccagttgtggtctctgagagac--aaaatttgtggttccctggctgatgcggcc 85408381

                                                                            
Query: 325      cttcaggaactcctgagcaaaggacttattaaactggtttcaaagcacagagctcaagta 384
                  |||||| ||||| || ||||||||||||||||||||||  || |||||||||||||| 
Sbjct: 85408382 tctcaggagctccttagtaaaggacttattaaactggttttgaaacacagagctcaagtt 85408441

                                                                       
Query: 385      atttacacccgaaataccaagggtggagatgccccagctgctggagaagatgcat 439
                ||||||||| |||||| |||||||||||| ||| |||||| |||  |||||||||
Sbjct: 85408442 atttacaccagaaatatcaagggtggagaggccacagctggtggtaaagatgcat 85408496


>Sscrofa_Chr07 
||          Length = 134764511

 Score =  759 bits (383), Expect = 0.0
 Identities = 461/487 (94%)
 Strand = Plus / Minus

                                                                            
Query: 6        tttctgtccgacatcttagcgaggaggcactactggtagctgctctcccggcttcgctat 65
                |||||||||||||||||||| |||||||||| |||| ||||||| |||| ||||||| ||
Sbjct: 35415914 tttctgtccgacatcttagcaaggaggcacttctggcagctgctttcccagcttcgcgat 35415855

                                                                            
Query: 66       gccgcccaaggacgacaagaagaagaaagatgccggaaagtcggccaagaaagacaaaga 125
                || ||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 35415854 gctgcccaaggatgacaagaagaagaaagatgccagaaagtcggccaagaaagacaaaga 35415795

                                                                            
Query: 126      cccagtgaacaaatctgggggcaaggccaaaaagaagaagtggtccaaaggcaaagttcg 185
                |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 35415794 cccagtaaacaaatctgggggcaaggccaaaaagaagaagttgtccaaaggcaaagttcg 35415735

                                                                            
Query: 186      ggacaagctcaataacctagtcttgtttgacaaagcgacatatgacaaactctgtaaaga 245
                ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 35415734 ggacaagctcaataacctagtcttgtttgacaaagtgacatatgacaaactctgtaaaga 35415675

                                                                            
Query: 246      agttcccaactataagcttataactccagctgttgtctctgagagactgaagattcgtgg 305
                |||||||||||||||| |||||||||||||| ||||||||||||||||| |||||| |||
Sbjct: 35415674 agttcccaactataaggttataactccagctattgtctctgagagactggagattcatgg 35415615

                                                                            
Query: 306      ttctctggccagggcagcccttcaggaactcctgagcaaaggacttattaaactggtttc 365
                |||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||
Sbjct: 35415614 ttctctggccagggcagcccttcaggagttcctgagcaaaggacttattaaactggtttc 35415555

                                                                            
Query: 366      aaagcacagagctcaagtaatttacacccgaaataccaagggtggagatgccccagctgc 425
                |||||||||||||||| ||||||||| | |||||| ||||||||||||||||||||||||
Sbjct: 35415554 aaagcacagagctcaaataatttacatctgaaatagcaagggtggagatgccccagctgc 35415495

                                                                            
Query: 426      tggagaagatgcataaacaggtccaaccaactgtacactgtacattttgaaaaataaaac 485
                |||||||||||| |||||||| || ||||||||||||||||| |||||||||||||||||
Sbjct: 35415494 tggagaagatgcttaaacaggccctaccaactgtacactgtatattttgaaaaataaaac 35415435

                       
Query: 486      tttaatt 492
                |||||||
Sbjct: 35415434 tttaatt 35415428


>Sscrofa_Chr03 
||          Length = 144787322

 Score =  626 bits (316), Expect = e-177
 Identities = 386/408 (94%), Gaps = 1/408 (0%)
 Strand = Plus / Plus

                                                                             
Query: 82        aagaagaagaaagatgccggaaagtcggccaagaaagacaaagacccagtgaacaaatct 141
                 |||||||| |||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct: 116441599 aagaagaaaaaagatgctggaaagtcagccaagaaagacaaagacccagtgaacaaatct 116441658

                                                                             
Query: 142       gggggcaaggccaaaaagaagaagtggtccaaaggcaaagttcgggacaagctcaataac 201
                 |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 116441659 gggggcaaggcccaaaagaagaagtggtccaaaggcaaagtttgggacaagctcaataac 116441718

                                                                             
Query: 202       ctagtcttgtttgacaaagcgacatatgacaaactctgtaaagaagttcccaactataag 261
                 ||||||| ||||||||||||||| ||||||||||||| ||| ||||||||||||||||||
Sbjct: 116441719 ctagtctcgtttgacaaagcgacgtatgacaaactctataa-gaagttcccaactataag 116441777

                                                                             
Query: 262       cttataactccagctgttgtctctgagagactgaagattcgtggttctctggccagggca 321
                 |||||||  |||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 116441778 cttataatcccagctattatctctgagagactgaagattcgtggttctctggccagggca 116441837

                                                                             
Query: 322       gcccttcaggaactcctgagcaaaggacttattaaactggtttcaaagcacagagctcaa 381
                 ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116441838 gcccttcagaaactcctgagcaaaggacttattaaactggtttcaaagcacagagctcaa 116441897

                                                                             
Query: 382       gtaatttacacccgaaataccaagggtggagatgccccagctgctggagaagatgcataa 441
                 |||||||||||| |||| ||||||||| ||||||||||||||||||||||| ||||||||
Sbjct: 116441898 gtaatttacacctgaaacaccaagggtagagatgccccagctgctggagaacatgcataa 116441957

                                                                 
Query: 442       acaggtccaaccaactgtacactgtacattttgaaaaataaaacttta 489
                 |||| ||| |||||||||||||||||| |||| |||||||||||||||
Sbjct: 116441958 acagttcccaccaactgtacactgtacgtttttaaaaataaaacttta 116442005


>Sscrofa_Chr10 
||          Length = 79102373

 Score =  615 bits (310), Expect = e-173
 Identities = 442/485 (91%), Gaps = 2/485 (0%)
 Strand = Plus / Plus

                                                                            
Query: 5        ctttctgtccgacatcttagcgaggaggcactactggtagctgctctcccggcttcgcta 64
                ||||||||||||||||||||||||| |||  | |  | |||||||| |||||||| ||| 
Sbjct: 45345234 ctttctgtccgacatcttagcgaggtggctgttccagcagctgctcccccggctttgctc 45345293

                                                                            
Query: 65       tgccgcccaaggacgacaagaagaagaaagatgccggaaagtcggccaagaaagacaaag 124
                |||| ||||||| | ||||||| ||||||||| || ||||||| |||||| |||||||||
Sbjct: 45345294 tgccacccaaggtcaacaagaaaaagaaagatcccagaaagtcagccaaggaagacaaag 45345353

                                                                            
Query: 125      acccagtgaacaaatctgggggcaaggccaaaaagaagaagtggtccaaaggcaaagttc 184
                |||||||||||||||||||||||||||||||||| ||  ||||||||||||||||| |||
Sbjct: 45345354 acccagtgaacaaatctgggggcaaggccaaaaaaaa--agtggtccaaaggcaaaattc 45345411

                                                                            
Query: 185      gggacaagctcaataacctagtcttgtttgacaaagcgacatatgacaaactctgtaaag 244
                |||||||| |||||  |||||||||||||||||||| ||| |||||||||||||||||||
Sbjct: 45345412 gggacaaggtcaattgcctagtcttgtttgacaaagtgacgtatgacaaactctgtaaag 45345471

                                                                            
Query: 245      aagttcccaactataagcttataactccagctgttgtctctgagagactgaagattcgtg 304
                || |||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct: 45345472 aaattcccaactataagcttataaccccagctgttgtctctgagagactgaagattcatg 45345531

                                                                            
Query: 305      gttctctggccagggcagcccttcaggaactcctgagcaaaggacttattaaactggttt 364
                |||||||||||||||||||||||||||| ||||||||||| |||||| ||||||||||||
Sbjct: 45345532 gttctctggccagggcagcccttcaggagctcctgagcaagggactttttaaactggttt 45345591

                                                                            
Query: 365      caaagcacagagctcaagtaatttacacccgaaataccaagggtggagatgccccagctg 424
                ||||||||||||| ||||||||||||||| |||| |||||||||||||||||||  | ||
Sbjct: 45345592 caaagcacagagcccaagtaatttacacctgaaacaccaagggtggagatgccctggttg 45345651

                                                                            
Query: 425      ctggagaagatgcataaacaggtccaaccaactgtacactgtacattttgaaaaataaaa 484
                |||||||||||| |||||||||| | |||||||||||||| |||||||||||||||||||
Sbjct: 45345652 ctggagaagatgtataaacaggttccaccaactgtacactttacattttgaaaaataaaa 45345711

                     
Query: 485      cttta 489
                |||||
Sbjct: 45345712 cttta 45345716


>Sscrofa_Chr18 
||          Length = 61220071

 Score =  587 bits (296), Expect = e-165
 Identities = 440/485 (90%), Gaps = 6/485 (1%)
 Strand = Plus / Plus

                                                                            
Query: 6        tttctgtccgacatcttagcgaggaggc-actactggtagctgctctcccggcttcgcta 64
                ||||||||| |||||||||||||| ||| ||| ||   ||||||||||||||||||||||
Sbjct: 16437217 tttctgtccaacatcttagcgaggcggctact-ctaccagctgctctcccggcttcgcta 16437275

                                                                            
Query: 65       tgccgcccaaggacgacaagaagaagaaagatgccggaaagtcggccaagaaagacaaag 124
                |||| ||||||||| | || ||||||||||||||| |||||| | |||||||||||||||
Sbjct: 16437276 tgccacccaaggacaataacaagaagaaagatgccagaaagttgaccaagaaagacaaag 16437335

                                                                            
Query: 125      acccagtgaacaaatctgggggcaaggccaaaaagaagaagtggtccaaaggcaaagttc 184
                |||||||||||||| |||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct: 16437336 acccagtgaacaaacctggggacaaggccgaaaagaagaagtggtccaaaggcaaagttc 16437395

                                                                            
Query: 185      gggacaagctcaataacctagtcttgtttgacaaagcgacatatgacaaactctgtaaag 244
                |||||||| |||||| |||||||||||||||||||| |||||||||||| ||||||||||
Sbjct: 16437396 gggacaaggtcaatagcctagtcttgtttgacaaagtgacatatgacaagctctgtaaag 16437455

                                                                            
Query: 245      aagttcccaactataagcttataactccagctgttgtctctgagagactgaagattcgtg 304
                | ||| ||||||||||||| ||||| || ||||| |||||||||| ||||| |||| |||
Sbjct: 16437456 aggtttccaactataagctcataacccctgctgtcgtctctgagaaactgaggatttgtg 16437515

                                                                            
Query: 305      gttctctggccagggcagcccttcaggaactcctgagcaaaggacttattaaactggttt 364
                ||||||||| |||||||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct: 16437516 gttctctggtcagggcagcccttcaggagctcctgagctaaggacttattaaactggttt 16437575

                                                                            
Query: 365      caaagcacagagctcaagtaatttacacccgaaataccaagggtggagatgccccagctg 424
                ||||||||||||||| |||||||||||||||||| |||||||||||||||||||| ||||
Sbjct: 16437576 caaagcacagagctcgagtaatttacacccgaaacaccaagggtggagatgccccggctg 16437635

                                                                            
Query: 425      ctggagaagatgcataaacaggtccaaccaactgtacactgtacattttgaaaaataaaa 484
                || |||||||||||| ||||||||| ||||    || |||||||| ||||||||||||||
Sbjct: 16437636 ctagagaagatgcatgaacaggtcccacca----tatactgtacactttgaaaaataaaa 16437691

                     
Query: 485      cttta 489
                |||||
Sbjct: 16437692 cttta 16437696


>Sscrofa_Chr13 
||          Length = 218635234

 Score =  571 bits (288), Expect = e-160
 Identities = 433/480 (90%), Gaps = 1/480 (0%)
 Strand = Plus / Minus

                                                                            
Query: 5        ctttctgtccgacatcttagcgaggaggcactactggtagctgctctcccggcttcgcta 64
                ||||||||||||||||||||| ||| |||||| || ||| | ||||||||||||  ||||
Sbjct: 34216767 ctttctgtccgacatcttagccaggtggcacttctagtatccgctctcccggctgtgcta 34216708

                                                                            
Query: 65       tgccgcccaaggacgacaagaagaagaaagatgccggaaagtcggccaagaaagacaaag 124
                ||||| |||||| |||||||||| ||||||||||| | || |||||||||||||||||||
Sbjct: 34216707 tgccggccaagggcgacaagaaggagaaagatgccaggaattcggccaagaaagacaaag 34216648

                                                                            
Query: 125      acccagtgaacaaatctgggggcaaggccaaaaagaagaagtggtccaaaggcaaagttc 184
                |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct: 34216647 acccagtgaacaaatctgggggcaagtccaaaaagaagaagtggtccaaaggcaaatttc 34216588

                                                                            
Query: 185      gggacaagctcaataacctagtcttgtttgacaaagcgacatatgacaaactctgtaaag 244
                ||||||||||||||||||||||| ||||||||||||| |||| |||||||||||||||||
Sbjct: 34216587 gggacaagctcaataacctagtcctgtttgacaaagcaacatctgacaaactctgtaaag 34216528

                                                                            
Query: 245      aagttcccaactataagcttataactccagctgttgtctctgagagactgaagattcgtg 304
                ||||||||||||||||||||||||||| |||||| ||||||||||||  ||||||| |||
Sbjct: 34216527 aagttcccaactataagcttataactctagctgtcgtctctgagagatggaagatttgtg 34216468

                                                                            
Query: 305      gttctctggccagggcagcccttcaggaactcctgagcaaaggacttattaaactggttt 364
                ||||||||||||||||||||||||| || ||||||||| ||||| || |||| |||| ||
Sbjct: 34216467 gttctctggccagggcagcccttca-gagctcctgagccaaggagttgttaagctggctt 34216409

                                                                            
Query: 365      caaagcacagagctcaagtaatttacacccgaaataccaagggtggagatgccccagctg 424
                ||| ||||||||||| |||||||||||||| ||| ||||||| |||||||||||| ||||
Sbjct: 34216408 caatgcacagagctccagtaatttacacccaaaacaccaaggctggagatgccccggctg 34216349

                                                                            
Query: 425      ctggagaagatgcataaacaggtccaaccaactgtacactgtacattttgaaaaataaaa 484
                ||||||||||| |||| |||||||  |||||||  | | || |||| |||||||||||||
Sbjct: 34216348 ctggagaagatacatacacaggtcacaccaactccatattgcacatcttgaaaaataaaa 34216289


>Sscrofa_Chr09 
||          Length = 153670197

 Score =  422 bits (213), Expect = e-115
 Identities = 299/327 (91%), Gaps = 3/327 (0%)
 Strand = Plus / Plus

                                                                            
Query: 102      aaagtcggccaagaaagacaaagacccagtgaacaaatctgggggcaaggccaaaaagaa 161
                |||||| ||||||||||||||||||||  |||||||||||||||||||||||||||||| 
Sbjct: 98740340 aaagtcagccaagaaagacaaagaccccatgaacaaatctgggggcaaggccaaaaaga- 98740398

                                                                            
Query: 162      gaagtggtccaaaggcaaagttcgggacaagctcaataacctagtcttgtttgacaaagc 221
                  |||||||||||||||||||| |||| |||||||||||||||||||||  |||||||| 
Sbjct: 98740399 --agtggtccaaaggcaaagtttgggataagctcaataacctagtcttgactgacaaagt 98740456

                                                                            
Query: 222      gacatatgacaaactctgtaaagaagttcccaactataagcttataactccagctgttgt 281
                |||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||  |
Sbjct: 98740457 gacatatgacaaactctgtaaacaagttcccaactataagcttataaccccagctgtcat 98740516

                                                                            
Query: 282      ctctgagagactgaagattcgtggttctctggccagggcagcccttcaggaactcctgag 341
                |||| ||||||||||||| |||||||| ||||||||||| |||| |||||| ||||||||
Sbjct: 98740517 ctctcagagactgaagatacgtggttccctggccagggctgcccctcaggagctcctgag 98740576

                                                                            
Query: 342      caaaggacttattaaactggtttcaaagcacagagctcaagtaatttacacccgaaatac 401
                ||||||||||||||||||||||||||||||||||| |||||| ||||| ||  |||| ||
Sbjct: 98740577 caaaggacttattaaactggtttcaaagcacagagttcaagttatttatactagaaacac 98740636

                                           
Query: 402      caagggtggagatgccccagctgctgg 428
                |||| ||||||||||||||||||||||
Sbjct: 98740637 caagagtggagatgccccagctgctgg 98740663



 Score =  422 bits (213), Expect = e-115
 Identities = 299/327 (91%), Gaps = 3/327 (0%)
 Strand = Plus / Plus

                                                                            
Query: 102      aaagtcggccaagaaagacaaagacccagtgaacaaatctgggggcaaggccaaaaagaa 161
                |||||| ||||||||||||||||||||  |||||||||||||||||||||||||||||| 
Sbjct: 98820443 aaagtcagccaagaaagacaaagaccccatgaacaaatctgggggcaaggccaaaaaga- 98820501

                                                                            
Query: 162      gaagtggtccaaaggcaaagttcgggacaagctcaataacctagtcttgtttgacaaagc 221
                  |||||||||||||||||||| |||| |||||||||||||||||||||  |||||||| 
Sbjct: 98820502 --agtggtccaaaggcaaagtttgggataagctcaataacctagtcttgactgacaaagt 98820559

                                                                            
Query: 222      gacatatgacaaactctgtaaagaagttcccaactataagcttataactccagctgttgt 281
                |||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||  |
Sbjct: 98820560 gacatatgacaaactctgtaaacaagttcccaactataagcttataaccccagctgtcat 98820619

                                                                            
Query: 282      ctctgagagactgaagattcgtggttctctggccagggcagcccttcaggaactcctgag 341
                |||| ||||||||||||| |||||||| ||||||||||| |||| |||||| ||||||||
Sbjct: 98820620 ctctcagagactgaagatacgtggttccctggccagggctgcccctcaggagctcctgag 98820679

                                                                            
Query: 342      caaaggacttattaaactggtttcaaagcacagagctcaagtaatttacacccgaaatac 401
                ||||||||||||||||||||||||||||||||||| |||||| ||||| ||  |||| ||
Sbjct: 98820680 caaaggacttattaaactggtttcaaagcacagagttcaagttatttatactagaaacac 98820739

                                           
Query: 402      caagggtggagatgccccagctgctgg 428
                |||| ||||||||||||||||||||||
Sbjct: 98820740 caagagtggagatgccccagctgctgg 98820766



 Score =  363 bits (183), Expect = 1e-97
 Identities = 186/187 (99%)
 Strand = Plus / Minus

                                                                            
Query: 161      agaagtggtccaaaggcaaagttcgggacaagctcaataacctagtcttgtttgacaaag 220
                |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 51276313 agaagtggtccaaaggcaaagttcgggacaagcttaataacctagtcttgtttgacaaag 51276254

                                                                            
Query: 221      cgacatatgacaaactctgtaaagaagttcccaactataagcttataactccagctgttg 280
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51276253 cgacatatgacaaactctgtaaagaagttcccaactataagcttataactccagctgttg 51276194

                                                                            
Query: 281      tctctgagagactgaagattcgtggttctctggccagggcagcccttcaggaactcctga 340
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51276193 tctctgagagactgaagattcgtggttctctggccagggcagcccttcaggaactcctga 51276134

                       
Query: 341      gcaaagg 347
                |||||||
Sbjct: 51276133 gcaaagg 51276127



 Score =  357 bits (180), Expect = 8e-96
 Identities = 373/436 (85%), Gaps = 11/436 (2%)
 Strand = Plus / Plus

                                                                            
Query: 43       agctgctctcccggcttcgctatgccgcccaaggacgacaagaagaagaaagatgccgga 102
                |||||||||||||||||  |  ||||||| ||||| ||||||||    ||||||||| ||
Sbjct: 28768885 agctgctctcccggcttttccctgccgcctaaggatgacaagaa----aaagatgccaga 28768940

                                                                            
Query: 103      aagtcggccaagaaagacaaagacccagtgaacaaatctgggggcaaggccaaaaagaag 162
                ||||||||||||||||      ||||||||||||||||||||| || || ||||||||||
Sbjct: 28768941 aagtcggccaagaaag------acccagtgaacaaatctggggacagggacaaaaagaag 28768994

                                                                            
Query: 163      aagtggtccaaaggcaaagttcgggacaagctcaataacctagtcttgtttgacaaagcg 222
                |||||||||||||||||||||| ||||||| ||||||| |||||||||| ||||||||||
Sbjct: 28768995 aagtggtccaaaggcaaagttcaggacaaggtcaataatctagtcttgtgtgacaaagcg 28769054

                                                                            
Query: 223      acatatgacaaactctgtaaagaagttcccaactataagcttataactccagctgttgtc 282
                ||||||||||||| |||||||||| | |  || ||||||| |||||  ||||||||   |
Sbjct: 28769055 acatatgacaaacgctgtaaagaa-tgcttaagtataagcgtataaggccagctgtcacc 28769113

                                                                            
Query: 283      tctgagagactgaagattcgtggttctctggccagggcagcccttcaggaactcctgagc 342
                |||||||||| |||||| ||||| || |||| || ||||||||||||||| |||| ||||
Sbjct: 28769114 tctgagagacggaagatccgtggctccctggtcaaggcagcccttcaggagctcccgagc 28769173

                                                                            
Query: 343      aaaggacttattaaactggtttcaaagcacagagctcaagtaatttacacccgaaatacc 402
                |||||||||||| ||||| || |||||| |||||||||||| ||||||||| |||| |||
Sbjct: 28769174 aaaggacttattcaactgcttccaaagctcagagctcaagtcatttacaccagaaacacc 28769233

                                                                            
Query: 403      aagggtggagatgccccagctgctggagaagatgcataaacaggtccaaccaactgtaca 462
                |||| ||| |||||||  |  |||| ||||||||||| |||||||||  || ||||||||
Sbjct: 28769234 aaggatggcgatgccctggaggctgaagaagatgcatgaacaggtcctgccgactgtaca 28769293

                                
Query: 463      ctgtacattttgaaaa 478
                |||||| |||||||||
Sbjct: 28769294 ctgtacgttttgaaaa 28769309



 Score =  337 bits (170), Expect = 8e-90
 Identities = 371/436 (85%), Gaps = 14/436 (3%)
 Strand = Plus / Minus

                                                                            
Query: 43       agctgctctcccggcttcgctatgccgcccaaggacgacaagaagaagaaagatgccgga 102
                ||||||||||||||||| ||  ||||||||||||| ||||||||    ||||||||| ||
Sbjct: 28910145 agctgctctcccggctttgccctgccgcccaaggatgacaagaa----aaagatgccaga 28910090

                                                                            
Query: 103      aagtcggccaagaaagacaaagacccagtgaacaaatctgggggcaaggccaaaaagaag 162
                ||||| ||||||||||||      ||||||||| ||||||||| || |||||||||||||
Sbjct: 28910089 aagtcagccaagaaagac------ccagtgaaccaatctggggacagggccaaaaagaag 28910036

                                                                            
Query: 163      aagtggtccaaaggcaaagttcgggacaagctcaataacctagtcttgtttgacaaagcg 222
                   ||||||||||||||||||| ||||||| ||||||| |||||||||| ||||||||||
Sbjct: 28910035 ---tggtccaaaggcaaagttcaggacaaggtcaataatctagtcttgtgtgacaaagcg 28909979

                                                                            
Query: 223      acatatgacaaactctgtaaagaagttcccaactataagcttataactccagctgttgtc 282
                ||||||||||||| |||||||||| | |  || ||||||| |||||  ||||||||   |
Sbjct: 28909978 acatatgacaaacgctgtaaagaa-tgcttaagtataagcgtataaggccagctgtcacc 28909920

                                                                            
Query: 283      tctgagagactgaagattcgtggttctctggccagggcagcccttcaggaactcctgagc 342
                |||||||||| |||||| ||||| || |||| || ||||||||||||||| |||| ||||
Sbjct: 28909919 tctgagagacggaagatccgtggctccctggtcaaggcagcccttcaggagctcccgagc 28909860

                                                                            
Query: 343      aaaggacttattaaactggtttcaaagcacagagctcaagtaatttacacccgaaatacc 402
                |||||||||||| ||||| || |||||| |||||||||||| ||||||||| |||| |||
Sbjct: 28909859 aaaggacttattcaactgcttccaaagctcagagctcaagtcatttacaccagaaacacc 28909800

                                                                            
Query: 403      aagggtggagatgccccagctgctggagaagatgcataaacaggtccaaccaactgtaca 462
                |||| ||| |||||||  || || | ||||||||||| |||||||||  || ||||||||
Sbjct: 28909799 aaggatggcgatgccctggcggccgaagaagatgcatgaacaggtcctgccgactgtaca 28909740

                                
Query: 463      ctgtacattttgaaaa 478
                |||||| |||||||||
Sbjct: 28909739 ctgtacgttttgaaaa 28909724



 Score =  196 bits (99), Expect = 2e-47
 Identities = 102/103 (99%)
 Strand = Plus / Minus

                                                                            
Query: 345      aggacttattaaactggtttcaaagcacagagctcaagtaatttacacccgaaataccaa 404
                |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 51274732 aggacttattaaactggtttcaaagcacagagctcaagtaatttacacgcgaaataccaa 51274673

                                                           
Query: 405      gggtggagatgccccagctgctggagaagatgcataaacaggt 447
                |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51274672 gggtggagatgccccagctgctggagaagatgcataaacaggt 51274630



 Score =  192 bits (97), Expect = 3e-46
 Identities = 97/97 (100%)
 Strand = Plus / Minus

                                                                            
Query: 66       gccgcccaaggacgacaagaagaagaaagatgccggaaagtcggccaagaaagacaaaga 125
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51276897 gccgcccaaggacgacaagaagaagaaagatgccggaaagtcggccaagaaagacaaaga 51276838

                                                     
Query: 126      cccagtgaacaaatctgggggcaaggccaaaaagaag 162
                |||||||||||||||||||||||||||||||||||||
Sbjct: 51276837 cccagtgaacaaatctgggggcaaggccaaaaagaag 51276801



 Score =  123 bits (62), Expect = 2e-25
 Identities = 62/62 (100%)
 Strand = Plus / Minus

                                                                            
Query: 5        ctttctgtccgacatcttagcgaggaggcactactggtagctgctctcccggcttcgcta 64
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51277189 ctttctgtccgacatcttagcgaggaggcactactggtagctgctctcccggcttcgcta 51277130

                  
Query: 65       tg 66
                ||
Sbjct: 51277129 tg 51277128



 Score = 95.6 bits (48), Expect = 5e-17
 Identities = 51/52 (98%)
 Strand = Plus / Minus

                                                                    
Query: 441      aacaggtccaaccaactgtacactgtacattttgaaaaataaaactttaatt 492
                |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 51274549 aacaggtccaaccagctgtacactgtacattttgaaaaataaaactttaatt 51274498


>gb|JH118744.1| Sus scrofa unplaced genomic scaffold ChrUScaf2198
          Length = 143512

 Score =  359 bits (181), Expect = 2e-96
 Identities = 279/309 (90%), Gaps = 2/309 (0%)
 Strand = Plus / Plus

                                                                          
Query: 6      tttctgtccgacatcttagcgaggaggc-actactggtagctgctctcccggcttcgcta 64
              ||||||||| |||||||||||||| ||| ||| ||   ||||||||||||||||||||||
Sbjct: 130370 tttctgtccaacatcttagcgaggcggctact-ctaccagctgctctcccggcttcgcta 130428

                                                                          
Query: 65     tgccgcccaaggacgacaagaagaagaaagatgccggaaagtcggccaagaaagacaaag 124
              |||| ||||||||| | || ||||||||||||||| |||||| | |||||||||||||||
Sbjct: 130429 tgccacccaaggacaataacaagaagaaagatgccagaaagttgaccaagaaagacaaag 130488

                                                                          
Query: 125    acccagtgaacaaatctgggggcaaggccaaaaagaagaagtggtccaaaggcaaagttc 184
              |||||||||||||| |||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct: 130489 acccagtgaacaaacctggggacaaggccgaaaagaagaagtggtccaaaggcaaagttc 130548

                                                                          
Query: 185    gggacaagctcaataacctagtcttgtttgacaaagcgacatatgacaaactctgtaaag 244
              |||||||| |||||| |||||||||||||||||||| |||||||||||| ||||||||||
Sbjct: 130549 gggacaaggtcaatagcctagtcttgtttgacaaagtgacatatgacaagctctgtaaag 130608

                                                                          
Query: 245    aagttcccaactataagcttataactccagctgttgtctctgagagactgaagattcgtg 304
              | ||| ||||||||||||| ||||| || ||||| |||||||||| ||||| |||| |||
Sbjct: 130609 aggtttccaactataagctcataacccctgctgtcgtctctgagaaactgaggatttgtg 130668

                       
Query: 305    gttctctgg 313
              |||||||||
Sbjct: 130669 gttctctgg 130677


>Sscrofa_Chr06 
||          Length = 157765593

 Score =  299 bits (151), Expect = 2e-78
 Identities = 225/249 (90%), Gaps = 3/249 (1%)
 Strand = Plus / Plus

                                                                            
Query: 241      aaagaagttcccaactataagcttataactccagctgttgtctctgagagactgaagatt 300
                |||||||||||||||| |||  ||||||| ||||||||||||||||||||||||||||||
Sbjct: 71999763 aaagaagttcccaactttaatgttataaccccagctgttgtctctgagagactgaagatt 71999822

                                                                            
Query: 301      cgtggttctctggccagggcagcccttcaggaactcctgagcaaaggacttattaaactg 360
                 |||| || |||| |||||||||||||||||| ||||||||||||| ||||| | | |||
Sbjct: 71999823 tgtggctccctgggcagggcagcccttcaggagctcctgagcaaagaacttactcacctg 71999882

                                                                            
Query: 361      gtttcaaagcacagagctcaagtaatttacacccgaaataccaagggtggagatgcccca 420
                |||||||||||||||||||| |||||||||||| |||| |||||||||||||||| ||||
Sbjct: 71999883 gtttcaaagcacagagctcatgtaatttacaccagaaacaccaagggtggagatggccca 71999942

                                                                            
Query: 421      gctgctggagaagatgcataaacaggtccaaccaactgtacactgtacattttgaaaaat 480
                ||||||   |||||||||| ||||||||| ||||||||||||  ||||||||||||||||
Sbjct: 71999943 gctgct---gaagatgcatgaacaggtcccaccaactgtacatggtacattttgaaaaat 71999999

                         
Query: 481      aaaacttta 489
                |||||||||
Sbjct: 72000000 aaaacttta 72000008



 Score =  190 bits (96), Expect = 1e-45
 Identities = 187/216 (86%), Gaps = 6/216 (2%)
 Strand = Plus / Plus

                                                                            
Query: 41       gtagctgctctcccggcttcgctatgccgcccaaggacgacaagaagaagaaagatgccg 100
                ||||||| |||||| |||||||| ||| |||||||||||||||||||||    ||||| |
Sbjct: 71999306 gtagctgttctcccagcttcgctgtgctgcccaaggacgacaagaagaac---gatgctg 71999362

                                                                            
Query: 101      gaaagtcggccaagaaagacaaagacccagtgaacaaatctgggggcaaggccaaaaaga 160
                |||  ||| |||||||| |||||||||||||||||||||||||||   ||||||||||||
Sbjct: 71999363 gaacatcgtccaagaaaaacaaagacccagtgaacaaatctggggctgaggccaaaaaga 71999422

                                                                            
Query: 161      agaagtggtccaaaggcaaagttcgggacaagctcaataacctagtcttgtttgacaaag 220
                | ||| | || |||||||||| || ||||||||||||||||||||||| ||||||| |||
Sbjct: 71999423 aaaagcgatctaaaggcaaagctcaggacaagctcaataacctagtctcgtttgaccaag 71999482

                                                    
Query: 221      cgacatatgacaaactctgtaaagaagttcccaact 256
                 |||||||   | |||||||||||||||||||||||
Sbjct: 71999483 tgacatat---acactctgtaaagaagttcccaact 71999515



 Score =  165 bits (83), Expect = 6e-38
 Identities = 175/205 (85%), Gaps = 3/205 (1%)
 Strand = Plus / Plus

                                                                            
Query: 5        ctttctgtccgacatcttagcgaggaggcactactggtagctgctctcccggcttcgcta 64
                |||| |||| ||||||| ||||||| |||| | || ||||||||||| || | || ||||
Sbjct: 41654879 ctttttgtctgacatctcagcgaggtggcagttctagtagctgctctacctgattagcta 41654938

                                                                            
Query: 65       tgccgcccaaggacgacaagaagaagaaagatgccggaaagtcggccaagaaagacaaag 124
                ||| || ||| |||   ||||||||||| |||||| | |||| |||||||||||||||||
Sbjct: 41654939 tgctgctcaaagacatgaagaagaagaaggatgccagcaagttggccaagaaagacaaag 41654998

                                                                            
Query: 125      acccagtgaacaaatctgggggcaaggccaaaaagaagaagtggtccaaaggcaaagttc 184
                |||||||||||||  |  ||||||||||||||   |||||||||||||||| ||||||||
Sbjct: 41654999 acccagtgaacaacaccaggggcaaggccaaa---aagaagtggtccaaagacaaagttc 41655055

                                         
Query: 185      gggacaagctcaataacctagtctt 209
                 ||||||||||||||||||||||||
Sbjct: 41655056 aggacaagctcaataacctagtctt 41655080



 Score = 95.6 bits (48), Expect = 5e-17
 Identities = 75/84 (89%)
 Strand = Plus / Plus

                                                                            
Query: 195      caataacctagtcttgtttgacaaagcgacatatgacaaactctgtaaagaagttcccaa 254
                ||||||||||||||||| ||||||||| ||| |||||||||||||||| || ||||||||
Sbjct: 41655310 caataacctagtcttgtatgacaaagcaacacatgacaaactctgtaaggaggttcccaa 41655369

                                        
Query: 255      ctataagcttataactccagctgt 278
                ||| ||| ||||||  ||||||||
Sbjct: 41655370 ctacaagtttataatcccagctgt 41655393


>gb|GL892484.1| Sus scrofa unplaced genomic scaffold chrU_scaffold1344
          Length = 78773

 Score =  293 bits (148), Expect = 1e-76
 Identities = 309/359 (86%), Gaps = 4/359 (1%)
 Strand = Plus / Plus

                                                                         
Query: 57    cttcgctatgccgcccaaggacgacaagaagaagaaagatgccggaaagtcggccaagaa 116
             |||| |||||| ||||||||| ||  |||||||||||||||||   ||||||||||||||
Sbjct: 65894 cttcactatgctgcccaaggatgatgagaagaagaaagatgcctagaagtcggccaagaa 65953

                                                                         
Query: 117   agacaaagacccagtgaacaaatctgggggcaaggccaaaaagaagaagtggtccaaagg 176
             | ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| | 
Sbjct: 65954 aaacaaagatccagtgaacaaatctgggggcaaggccgaaaagaagaagtggtccaagga 66013

                                                                         
Query: 177   caaagttcgggacaagctcaataacctagtcttgtttgacaaagcgacatatgacaaact 236
             || ||||| |||||||||||||| |||| ||||||| |  | || |||||||||||||||
Sbjct: 66014 cagagttcaggacaagctcaatacccta-tcttgttgg--atagagacatatgacaaact 66070

                                                                         
Query: 237   ctgtaaagaagttcccaactataagcttataactccagctgttgtctctgagagactgaa 296
             |||||| |  ||||||| | | ||||| ||| | | | || |  ||||||||||||||||
Sbjct: 66071 ctgtaaggtggttcccagccacaagctcatagc-ctaactctcatctctgagagactgaa 66129

                                                                         
Query: 297   gattcgtggttctctggccagggcagcccttcaggaactcctgagcaaaggacttattaa 356
             ||||| |||| ||||| ||||||||||||||||||| ||||| || ||||||||||||||
Sbjct: 66130 gattcatggtgctctgaccagggcagcccttcaggagctccttagtaaaggacttattaa 66189

                                                                        
Query: 357   actggtttcaaagcacagagctcaagtaatttacacccgaaataccaagggtggagatg 415
              |||||||| ||||||||||| |||||||  | |||| |||| ||||||||||||||||
Sbjct: 66190 gctggtttctaagcacagagcccaagtaacctgcaccagaaacaccaagggtggagatg 66248


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 41,849,597
Number of extensions: 317
Number of successful extensions: 317
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 291
Number of HSP's successfully gapped: 34
Length of query: 1089
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1068
Effective length of database: 2,808,413,156
Effective search space: 2999385250608
Effective search space used: 2999385250608
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)