Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002293
(1089 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001020486.1| 40S ribosomal protein S25 [Bos taurus]. 147 1e-35
Alignment gi|XP_002686043.1| PREDICTED: ribosomal protein S25-like [Bos t... 147 1e-35
Alignment gi|XP_001253386.1| PREDICTED: ribosomal protein S25-like isofor... 147 1e-35
Alignment gi|XP_001790348.1| PREDICTED: ribosomal protein S25-like isofor... 147 1e-35
Alignment gi|XP_001253641.2| PREDICTED: ribosomal protein S25-like [Bos t... 137 1e-32
Alignment gi|XP_002707790.1| PREDICTED: ribosomal protein S25-like [Bos t... 134 2e-31
Alignment gi|XP_002696233.1| PREDICTED: ribosomal protein S25-like [Bos t... 132 4e-31
Alignment gi|XP_001253910.1| PREDICTED: ribosomal protein S25-like [Bos t... 132 4e-31
>ref|NP_001020486.1| 40S ribosomal protein S25 [Bos taurus].
Length = 125
Score = 147 bits (372), Expect = 1e-35
Identities = 81/114 (71%), Positives = 81/114 (71%)
Frame = +1
Query: 64 MPPXXXXXXXXXXXXXXXXXXPVNXXXXXXXXXXXXXXXVRDKLNNLVLFDKATYDKLCK 243
MPP PVN VRDKLNNLVLFDKATYDKLCK
Sbjct: 1 MPPKDDKKKKDAGKSAKKDKDPVNKSGGKAKKKKWSKGKVRDKLNNLVLFDKATYDKLCK 60
Query: 244 EVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKLVSKHRAQVIYTRNTK 405
EVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKLVSKHRAQVIYTRNTK
Sbjct: 61 EVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKLVSKHRAQVIYTRNTK 114
>ref|XP_002686043.1| PREDICTED: ribosomal protein S25-like [Bos taurus].
Length = 125
Score = 147 bits (372), Expect = 1e-35
Identities = 81/114 (71%), Positives = 81/114 (71%)
Frame = +1
Query: 64 MPPXXXXXXXXXXXXXXXXXXPVNXXXXXXXXXXXXXXXVRDKLNNLVLFDKATYDKLCK 243
MPP PVN VRDKLNNLVLFDKATYDKLCK
Sbjct: 1 MPPKDDKKKKDAGKSAKKDKDPVNKSGGKAKKKKWSKGKVRDKLNNLVLFDKATYDKLCK 60
Query: 244 EVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKLVSKHRAQVIYTRNTK 405
EVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKLVSKHRAQVIYTRNTK
Sbjct: 61 EVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKLVSKHRAQVIYTRNTK 114
>ref|XP_001253386.1| PREDICTED: ribosomal protein S25-like isoform 1 [Bos taurus].
Length = 125
Score = 147 bits (372), Expect = 1e-35
Identities = 81/114 (71%), Positives = 81/114 (71%)
Frame = +1
Query: 64 MPPXXXXXXXXXXXXXXXXXXPVNXXXXXXXXXXXXXXXVRDKLNNLVLFDKATYDKLCK 243
MPP PVN VRDKLNNLVLFDKATYDKLCK
Sbjct: 1 MPPKDDKKKKDAGKSAKKDKDPVNKSGGKAKKKKWSKGKVRDKLNNLVLFDKATYDKLCK 60
Query: 244 EVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKLVSKHRAQVIYTRNTK 405
EVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKLVSKHRAQVIYTRNTK
Sbjct: 61 EVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKLVSKHRAQVIYTRNTK 114
>ref|XP_001790348.1| PREDICTED: ribosomal protein S25-like isoform 1 [Bos taurus].
Length = 125
Score = 147 bits (372), Expect = 1e-35
Identities = 81/114 (71%), Positives = 81/114 (71%)
Frame = +1
Query: 64 MPPXXXXXXXXXXXXXXXXXXPVNXXXXXXXXXXXXXXXVRDKLNNLVLFDKATYDKLCK 243
MPP PVN VRDKLNNLVLFDKATYDKLCK
Sbjct: 1 MPPKDDKKKKDAGKSAKKDKDPVNKSGGKAKKKKWSKGKVRDKLNNLVLFDKATYDKLCK 60
Query: 244 EVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKLVSKHRAQVIYTRNTK 405
EVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKLVSKHRAQVIYTRNTK
Sbjct: 61 EVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKLVSKHRAQVIYTRNTK 114
>ref|XP_001253641.2| PREDICTED: ribosomal protein S25-like [Bos taurus].
Length = 124
Score = 137 bits (346), Expect = 1e-32
Identities = 71/75 (94%), Positives = 72/75 (96%)
Frame = +1
Query: 181 VRDKLNNLVLFDKATYDKLCKEVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKL 360
V DKLNNLVLFDKATYDKLC+EVPNYKLITPAVVSERLKI GS ARAALQELLSKGLIKL
Sbjct: 39 VWDKLNNLVLFDKATYDKLCEEVPNYKLITPAVVSERLKIHGSQARAALQELLSKGLIKL 98
Query: 361 VSKHRAQVIYTRNTK 405
VSKHRAQVIYTRNTK
Sbjct: 99 VSKHRAQVIYTRNTK 113
>ref|XP_002707790.1| PREDICTED: ribosomal protein S25-like [Bos taurus].
Length = 124
Score = 134 bits (336), Expect = 2e-31
Identities = 69/75 (92%), Positives = 71/75 (94%)
Frame = +1
Query: 181 VRDKLNNLVLFDKATYDKLCKEVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKL 360
V DKLNNLVLFDKATYDKLC+EVPNYKLITPAVVSERLKI GS ARAALQELLSKGLI+L
Sbjct: 39 VWDKLNNLVLFDKATYDKLCEEVPNYKLITPAVVSERLKIHGSQARAALQELLSKGLIEL 98
Query: 361 VSKHRAQVIYTRNTK 405
VSKHRA VIYTRNTK
Sbjct: 99 VSKHRAXVIYTRNTK 113
>ref|XP_002696233.1| PREDICTED: ribosomal protein S25-like [Bos taurus].
Length = 123
Score = 132 bits (333), Expect = 4e-31
Identities = 70/75 (93%), Positives = 71/75 (94%)
Frame = +1
Query: 181 VRDKLNNLVLFDKATYDKLCKEVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKL 360
VRDKLNNLVLFDKA YDKLCK VP+YKLITPAVVSERLKI GSLARAALQELLSKGLIKL
Sbjct: 39 VRDKLNNLVLFDKAAYDKLCK-VPSYKLITPAVVSERLKIHGSLARAALQELLSKGLIKL 97
Query: 361 VSKHRAQVIYTRNTK 405
VSKHR QVIYTRNTK
Sbjct: 98 VSKHRVQVIYTRNTK 112
>ref|XP_001253910.1| PREDICTED: ribosomal protein S25-like [Bos taurus].
Length = 123
Score = 132 bits (333), Expect = 4e-31
Identities = 70/75 (93%), Positives = 71/75 (94%)
Frame = +1
Query: 181 VRDKLNNLVLFDKATYDKLCKEVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKL 360
VRDKLNNLVLFDKA YDKLCK VP+YKLITPAVVSERLKI GSLARAALQELLSKGLIKL
Sbjct: 39 VRDKLNNLVLFDKAAYDKLCK-VPSYKLITPAVVSERLKIHGSLARAALQELLSKGLIKL 97
Query: 361 VSKHRAQVIYTRNTK 405
VSKHR QVIYTRNTK
Sbjct: 98 VSKHRVQVIYTRNTK 112
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 38,104,427
Number of extensions: 1188776
Number of successful extensions: 5001
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 4907
Number of HSP's successfully gapped: 8
Length of query: 363
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 259
Effective length of database: 14,240,222
Effective search space: 3688217498
Effective search space used: 3688217498
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002293
(1089 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_536549.2| PREDICTED: similar to 40S ribosomal protein S25... 151 9e-37
Alignment gi|XP_851987.1| PREDICTED: similar to 40S ribosomal protein S25... 73 5e-13
>ref|XP_536549.2| PREDICTED: similar to 40S ribosomal protein S25 [Canis familiaris].
Length = 199
Score = 151 bits (382), Expect = 9e-37
Identities = 83/116 (71%), Positives = 83/116 (71%)
Frame = +1
Query: 58 FAMPPXXXXXXXXXXXXXXXXXXPVNXXXXXXXXXXXXXXXVRDKLNNLVLFDKATYDKL 237
FAMPP PVN VRDKLNNLVLFDKATYDKL
Sbjct: 73 FAMPPKDDKKKKDAGKSAKKDKDPVNKSGGKAKKKKWSKGKVRDKLNNLVLFDKATYDKL 132
Query: 238 CKEVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKLVSKHRAQVIYTRNTK 405
CKEVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKLVSKHRAQVIYTRNTK
Sbjct: 133 CKEVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKLVSKHRAQVIYTRNTK 188
>ref|XP_851987.1| PREDICTED: similar to 40S ribosomal protein S25 [Canis familiaris].
Length = 92
Score = 72.8 bits (177), Expect = 5e-13
Identities = 38/43 (88%), Positives = 40/43 (93%)
Frame = +1
Query: 277 VVSERLKIRGSLARAALQELLSKGLIKLVSKHRAQVIYTRNTK 405
V +RLKI+GSLARAALQELLSKGLIKLVS HRAQVIYTRNTK
Sbjct: 39 VRDKRLKIQGSLARAALQELLSKGLIKLVSNHRAQVIYTRNTK 81
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 39,314,700
Number of extensions: 1135283
Number of successful extensions: 5385
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5317
Number of HSP's successfully gapped: 2
Length of query: 363
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 259
Effective length of database: 15,407,560
Effective search space: 3990558040
Effective search space used: 3990558040
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002293
(1089 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001019.1| 40S ribosomal protein S25 [Homo sapiens]. 147 1e-35
>ref|NP_001019.1| 40S ribosomal protein S25 [Homo sapiens].
Length = 125
Score = 147 bits (372), Expect = 1e-35
Identities = 81/114 (71%), Positives = 81/114 (71%)
Frame = +1
Query: 64 MPPXXXXXXXXXXXXXXXXXXPVNXXXXXXXXXXXXXXXVRDKLNNLVLFDKATYDKLCK 243
MPP PVN VRDKLNNLVLFDKATYDKLCK
Sbjct: 1 MPPKDDKKKKDAGKSAKKDKDPVNKSGGKAKKKKWSKGKVRDKLNNLVLFDKATYDKLCK 60
Query: 244 EVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKLVSKHRAQVIYTRNTK 405
EVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKLVSKHRAQVIYTRNTK
Sbjct: 61 EVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKLVSKHRAQVIYTRNTK 114
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 38,077,478
Number of extensions: 1079612
Number of successful extensions: 5154
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5049
Number of HSP's successfully gapped: 1
Length of query: 363
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 259
Effective length of database: 14,868,908
Effective search space: 3851047172
Effective search space used: 3851047172
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002293
(1089 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_077228.1| 40S ribosomal protein S25 [Mus musculus]. 147 1e-35
Alignment gi|XP_003085886.1| PREDICTED: 40S ribosomal protein S25-like [M... 141 1e-33
Alignment gi|XP_899588.1| PREDICTED: 40S ribosomal protein S25-like [Mus ... 140 2e-33
Alignment gi|XP_144599.1| PREDICTED: 40S ribosomal protein S25-like [Mus ... 138 7e-33
Alignment gi|XP_913389.3| PREDICTED: 40S ribosomal protein S25-like [Mus ... 115 6e-26
>ref|NP_077228.1| 40S ribosomal protein S25 [Mus musculus].
Length = 125
Score = 147 bits (372), Expect = 1e-35
Identities = 81/114 (71%), Positives = 81/114 (71%)
Frame = +1
Query: 64 MPPXXXXXXXXXXXXXXXXXXPVNXXXXXXXXXXXXXXXVRDKLNNLVLFDKATYDKLCK 243
MPP PVN VRDKLNNLVLFDKATYDKLCK
Sbjct: 1 MPPKDDKKKKDAGKSAKKDKDPVNKSGGKAKKKKWSKGKVRDKLNNLVLFDKATYDKLCK 60
Query: 244 EVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKLVSKHRAQVIYTRNTK 405
EVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKLVSKHRAQVIYTRNTK
Sbjct: 61 EVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKLVSKHRAQVIYTRNTK 114
>ref|XP_003085886.1| PREDICTED: 40S ribosomal protein S25-like [Mus musculus].
Length = 125
Score = 141 bits (355), Expect = 1e-33
Identities = 78/114 (68%), Positives = 78/114 (68%)
Frame = +1
Query: 64 MPPXXXXXXXXXXXXXXXXXXPVNXXXXXXXXXXXXXXXVRDKLNNLVLFDKATYDKLCK 243
MPP PVN VRDKLNNLVLFDKATYDKLCK
Sbjct: 1 MPPKDDKKKKDAGKSAKKDKDPVNKSGGKAKKKKWSKGKVRDKLNNLVLFDKATYDKLCK 60
Query: 244 EVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKLVSKHRAQVIYTRNTK 405
EVPNYKLITPAVVSERLKIR SLARAALQELLSKGLIKLVSKHRAQVIY RN K
Sbjct: 61 EVPNYKLITPAVVSERLKIRSSLARAALQELLSKGLIKLVSKHRAQVIYPRNAK 114
>ref|XP_899588.1| PREDICTED: 40S ribosomal protein S25-like [Mus musculus].
Length = 125
Score = 140 bits (352), Expect = 2e-33
Identities = 77/114 (67%), Positives = 78/114 (68%)
Frame = +1
Query: 64 MPPXXXXXXXXXXXXXXXXXXPVNXXXXXXXXXXXXXXXVRDKLNNLVLFDKATYDKLCK 243
MPP PVN VRDKLNNLVLFDKATYDKLCK
Sbjct: 1 MPPKDDKKKKDAGKSAKKDKDPVNKSGGKAKKKKWSKGKVRDKLNNLVLFDKATYDKLCK 60
Query: 244 EVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKLVSKHRAQVIYTRNTK 405
EVPNYKLITPAVVS+RLKIR SLARAALQELLSKGLIKLVSKHRAQVIY RN K
Sbjct: 61 EVPNYKLITPAVVSQRLKIRSSLARAALQELLSKGLIKLVSKHRAQVIYPRNAK 114
>ref|XP_144599.1| PREDICTED: 40S ribosomal protein S25-like [Mus musculus].
Length = 125
Score = 138 bits (348), Expect = 7e-33
Identities = 77/114 (67%), Positives = 78/114 (68%)
Frame = +1
Query: 64 MPPXXXXXXXXXXXXXXXXXXPVNXXXXXXXXXXXXXXXVRDKLNNLVLFDKATYDKLCK 243
MPP PVN VRDKLNNLVLFDKATYDKLCK
Sbjct: 1 MPPKDDKKKKDAGKSAKKDKDPVNKSGGKAKKKKWSKGKVRDKLNNLVLFDKATYDKLCK 60
Query: 244 EVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKLVSKHRAQVIYTRNTK 405
EV NYKLITPAVVSERLKI SLARAALQELLSKGL+KLVSKHRAQVIYTRNTK
Sbjct: 61 EVQNYKLITPAVVSERLKICSSLARAALQELLSKGLLKLVSKHRAQVIYTRNTK 114
>ref|XP_913389.3| PREDICTED: 40S ribosomal protein S25-like [Mus musculus].
Length = 127
Score = 115 bits (288), Expect = 6e-26
Identities = 62/75 (82%), Positives = 67/75 (89%)
Frame = +1
Query: 181 VRDKLNNLVLFDKATYDKLCKEVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKL 360
VRDKL+NLVLFD LCKEV NYKLITP++VSERLKI GSLARAALQ+LLSKGLIKL
Sbjct: 38 VRDKLDNLVLFDN-----LCKEVSNYKLITPSMVSERLKIPGSLARAALQKLLSKGLIKL 92
Query: 361 VSKHRAQVIYTRNTK 405
VSKHRAQ+IYTRNTK
Sbjct: 93 VSKHRAQMIYTRNTK 107
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 32,036,273
Number of extensions: 892419
Number of successful extensions: 4004
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 3902
Number of HSP's successfully gapped: 5
Length of query: 363
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 260
Effective length of database: 12,523,851
Effective search space: 3256201260
Effective search space used: 3256201260
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002293
(1089 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003129968.1| PREDICTED: 40S ribosomal protein S25-like is... 147 8e-36
Alignment gi|XP_003129967.1| PREDICTED: 40S ribosomal protein S25-like is... 147 8e-36
Alignment gi|XP_003130248.1| PREDICTED: 40S ribosomal protein S25-like [S... 133 2e-31
Alignment gi|XP_003357518.1| PREDICTED: 40S ribosomal protein S25-like [S... 133 2e-31
Alignment gi|XP_003361427.1| PREDICTED: hypothetical protein LOC100624912... 78 8e-15
>ref|XP_003129968.1| PREDICTED: 40S ribosomal protein S25-like isoform 2 [Sus scrofa].
Length = 125
Score = 147 bits (372), Expect = 8e-36
Identities = 81/114 (71%), Positives = 81/114 (71%)
Frame = +1
Query: 64 MPPXXXXXXXXXXXXXXXXXXPVNXXXXXXXXXXXXXXXVRDKLNNLVLFDKATYDKLCK 243
MPP PVN VRDKLNNLVLFDKATYDKLCK
Sbjct: 1 MPPKDDKKKKDAGKSAKKDKDPVNKSGGKAKKKKWSKGKVRDKLNNLVLFDKATYDKLCK 60
Query: 244 EVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKLVSKHRAQVIYTRNTK 405
EVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKLVSKHRAQVIYTRNTK
Sbjct: 61 EVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKLVSKHRAQVIYTRNTK 114
>ref|XP_003129967.1| PREDICTED: 40S ribosomal protein S25-like isoform 1 [Sus scrofa].
Length = 125
Score = 147 bits (372), Expect = 8e-36
Identities = 81/114 (71%), Positives = 81/114 (71%)
Frame = +1
Query: 64 MPPXXXXXXXXXXXXXXXXXXPVNXXXXXXXXXXXXXXXVRDKLNNLVLFDKATYDKLCK 243
MPP PVN VRDKLNNLVLFDKATYDKLCK
Sbjct: 1 MPPKDDKKKKDAGKSAKKDKDPVNKSGGKAKKKKWSKGKVRDKLNNLVLFDKATYDKLCK 60
Query: 244 EVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKLVSKHRAQVIYTRNTK 405
EVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKLVSKHRAQVIYTRNTK
Sbjct: 61 EVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKLVSKHRAQVIYTRNTK 114
>ref|XP_003130248.1| PREDICTED: 40S ribosomal protein S25-like [Sus scrofa].
Length = 143
Score = 133 bits (334), Expect = 2e-31
Identities = 74/104 (71%), Positives = 80/104 (76%)
Frame = +1
Query: 181 VRDKLNNLVLFDKATYDKLCKEVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKL 360
V DKLNNLVL DK TYDKLCK+VPNYKLITPAV+S+RLKIRGSLARAA QELLSKGLIKL
Sbjct: 28 VWDKLNNLVLTDKVTYDKLCKQVPNYKLITPAVISQRLKIRGSLARAAPQELLSKGLIKL 87
Query: 361 VSKHRAQVIYTRNTKXXXXXXXXXXXXXXXXNCTLYILKNKTLI 492
VSKHR QVIYTRNTK + L ILKNK+L+
Sbjct: 88 VSKHRVQVIYTRNTK---SGDAPAAGEFMKRSHQLNILKNKSLL 128
>ref|XP_003357518.1| PREDICTED: 40S ribosomal protein S25-like [Sus scrofa].
Length = 143
Score = 133 bits (334), Expect = 2e-31
Identities = 74/104 (71%), Positives = 80/104 (76%)
Frame = +1
Query: 181 VRDKLNNLVLFDKATYDKLCKEVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKL 360
V DKLNNLVL DK TYDKLCK+VPNYKLITPAV+S+RLKIRGSLARAA QELLSKGLIKL
Sbjct: 28 VWDKLNNLVLTDKVTYDKLCKQVPNYKLITPAVISQRLKIRGSLARAAPQELLSKGLIKL 87
Query: 361 VSKHRAQVIYTRNTKXXXXXXXXXXXXXXXXNCTLYILKNKTLI 492
VSKHR QVIYTRNTK + L ILKNK+L+
Sbjct: 88 VSKHRVQVIYTRNTK---SGDAPAAGEFMKRSHQLNILKNKSLL 128
>ref|XP_003361427.1| PREDICTED: hypothetical protein LOC100624912 [Sus scrofa].
Length = 196
Score = 78.2 bits (191), Expect = 8e-15
Identities = 43/83 (51%), Positives = 47/83 (56%)
Frame = +1
Query: 64 MPPXXXXXXXXXXXXXXXXXXPVNXXXXXXXXXXXXXXXVRDKLNNLVLFDKATYDKLCK 243
MPP PVN VRDK+N+LVLFDK TYDKLCK
Sbjct: 1 MPPKDNNKKKDARKLTKKDKDPVNKPGDKAEKKKWSKGKVRDKVNSLVLFDKVTYDKLCK 60
Query: 244 EVPNYKLITPAVVSERLKIRGSL 312
EV NYKLITPAVVSE+L+I GSL
Sbjct: 61 EVSNYKLITPAVVSEKLRICGSL 83
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 25,739,531
Number of extensions: 935320
Number of successful extensions: 3265
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 3220
Number of HSP's successfully gapped: 5
Length of query: 363
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 263
Effective length of database: 8,854,232
Effective search space: 2328663016
Effective search space used: 2328663016
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002293
(1089 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_ChrX 763 0.0
Sscrofa_Chr07 759 0.0
Sscrofa_Chr03 626 e-177
Sscrofa_Chr10 615 e-173
Sscrofa_Chr18 587 e-165
Sscrofa_Chr13 571 e-160
Sscrofa_Chr09 422 e-115
gb|JH118744.1| Sus scrofa unplaced genomic scaffold ChrUScaf2198 359 2e-96
Sscrofa_Chr06 299 2e-78
gb|GL892484.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 293 1e-76
>Sscrofa_ChrX
|| Length = 144288218
Score = 763 bits (385), Expect = 0.0
Identities = 465/489 (95%), Gaps = 7/489 (1%)
Strand = Plus / Plus
Query: 6 tttctgtccgacatcttagcgaggaggcactact--ggtagctgctctcccggcttcgct 63
|||||||| ||||||||||| || ||||||| || |||||||||||||||||||| |||
Sbjct: 108384186 tttctgtctgacatcttagcaagtaggcactcctctggtagctgctctcccggctttgct 108384245
Query: 64 atgccgcccaaggacgacaagaagaagaaagatgccggaaagtcggccaagaaagacaaa 123
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 108384246 ttgccgcccaaggacgacaagaagaagaaagatgccggaaagttggccaagaaagacaaa 108384305
Query: 124 gacccagtgaacaaatctgggggcaaggccaaaaagaagaagtggtccaaaggcaaagtt 183
||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct: 108384306 gacccagtgaacaaatctgggggcaaggccaaaaagaag---tggtccaaaggcaaaatt 108384362
Query: 184 cgggacaagctcaataacctagtcttgtttgacaaagcgacatatgacaaactctgtaaa 243
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 108384363 cgggacaagctcaataatttagtcttgtttgacaaagcgacatatgacaaactctgtaaa 108384422
Query: 244 gaagttcccaactataagcttataactccagctgttgtctctgagagactgaagattcgt 303
||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct: 108384423 gaagttcccaactataagcttattactccagctgttgtctctgaga--ctgaagattcgt 108384480
Query: 304 ggttctctggccagggcagcccttcaggaactcctgagcaaaggacttattaaactggtt 363
||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct: 108384481 ggttctctggccagggcagcccttcaggagctcttgagcaaaggacttattaaactggtt 108384540
Query: 364 tcaaagcacagagctcaagtaatttacacccgaaataccaagggtggagatgccccagct 423
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct: 108384541 tcaaagcacagagctcaagtagtttacacctgaaataccaagggtggagatgccccagct 108384600
Query: 424 gctggagaagatgcataaacaggtccaaccaactgtacactgtacattttgaaaaataaa 483
|||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct: 108384601 gctggagaagatgcataaacaggtcccatcaactgtacactgtacattttgaaaaataaa 108384660
Query: 484 actttaatt 492
|||||||||
Sbjct: 108384661 actttaatt 108384669
Score = 287 bits (145), Expect = 6e-75
Identities = 304/355 (85%), Gaps = 4/355 (1%)
Strand = Plus / Plus
Query: 85 aagaagaaagatgccggaaagtcggccaagaaagacaaagacccagtgaacaaatctggg 144
||||||||||| ||| |||| | || |||||||||||||||| ||| | |||||| ||||
Sbjct: 85408146 aagaagaaagacgccagaaaattggtcaagaaagacaaagactcaggggacaaatgtggg 85408205
Query: 145 ggcaaggccaaaaagaagaagtggtccaaaggcaaagttcgggacaagctcaataaccta 204
|||||||||||||| |||||||||||||||| ||||||| |||||||||||||||||||
Sbjct: 85408206 ggcaaggccaaaaataagaagtggtccaaagacaaagtttaggacaagctcaataaccta 85408265
Query: 205 gtcttgtttgacaaagcgacatatgacaaactctgtaaagaagttcccaactataagctt 264
| ||||||||||||||| ||||||||| || |||| |||||||||||| ||||||||
Sbjct: 85408266 gccttgtttgacaaagcaacatatgactaa--tggtaaggaagttcccaaccataagctt 85408323
Query: 265 ataactccagctgttgtctctgagagactgaagattcgtggttctctggccagggcagcc 324
||||| |||| ||| ||||||||||||| || ||| ||||||| ||||| || |||
Sbjct: 85408324 ataaccccagttgtggtctctgagagac--aaaatttgtggttccctggctgatgcggcc 85408381
Query: 325 cttcaggaactcctgagcaaaggacttattaaactggtttcaaagcacagagctcaagta 384
|||||| ||||| || |||||||||||||||||||||| || ||||||||||||||
Sbjct: 85408382 tctcaggagctccttagtaaaggacttattaaactggttttgaaacacagagctcaagtt 85408441
Query: 385 atttacacccgaaataccaagggtggagatgccccagctgctggagaagatgcat 439
||||||||| |||||| |||||||||||| ||| |||||| ||| |||||||||
Sbjct: 85408442 atttacaccagaaatatcaagggtggagaggccacagctggtggtaaagatgcat 85408496
>Sscrofa_Chr07
|| Length = 134764511
Score = 759 bits (383), Expect = 0.0
Identities = 461/487 (94%)
Strand = Plus / Minus
Query: 6 tttctgtccgacatcttagcgaggaggcactactggtagctgctctcccggcttcgctat 65
|||||||||||||||||||| |||||||||| |||| ||||||| |||| ||||||| ||
Sbjct: 35415914 tttctgtccgacatcttagcaaggaggcacttctggcagctgctttcccagcttcgcgat 35415855
Query: 66 gccgcccaaggacgacaagaagaagaaagatgccggaaagtcggccaagaaagacaaaga 125
|| ||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 35415854 gctgcccaaggatgacaagaagaagaaagatgccagaaagtcggccaagaaagacaaaga 35415795
Query: 126 cccagtgaacaaatctgggggcaaggccaaaaagaagaagtggtccaaaggcaaagttcg 185
|||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 35415794 cccagtaaacaaatctgggggcaaggccaaaaagaagaagttgtccaaaggcaaagttcg 35415735
Query: 186 ggacaagctcaataacctagtcttgtttgacaaagcgacatatgacaaactctgtaaaga 245
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 35415734 ggacaagctcaataacctagtcttgtttgacaaagtgacatatgacaaactctgtaaaga 35415675
Query: 246 agttcccaactataagcttataactccagctgttgtctctgagagactgaagattcgtgg 305
|||||||||||||||| |||||||||||||| ||||||||||||||||| |||||| |||
Sbjct: 35415674 agttcccaactataaggttataactccagctattgtctctgagagactggagattcatgg 35415615
Query: 306 ttctctggccagggcagcccttcaggaactcctgagcaaaggacttattaaactggtttc 365
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 35415614 ttctctggccagggcagcccttcaggagttcctgagcaaaggacttattaaactggtttc 35415555
Query: 366 aaagcacagagctcaagtaatttacacccgaaataccaagggtggagatgccccagctgc 425
|||||||||||||||| ||||||||| | |||||| ||||||||||||||||||||||||
Sbjct: 35415554 aaagcacagagctcaaataatttacatctgaaatagcaagggtggagatgccccagctgc 35415495
Query: 426 tggagaagatgcataaacaggtccaaccaactgtacactgtacattttgaaaaataaaac 485
|||||||||||| |||||||| || ||||||||||||||||| |||||||||||||||||
Sbjct: 35415494 tggagaagatgcttaaacaggccctaccaactgtacactgtatattttgaaaaataaaac 35415435
Query: 486 tttaatt 492
|||||||
Sbjct: 35415434 tttaatt 35415428
>Sscrofa_Chr03
|| Length = 144787322
Score = 626 bits (316), Expect = e-177
Identities = 386/408 (94%), Gaps = 1/408 (0%)
Strand = Plus / Plus
Query: 82 aagaagaagaaagatgccggaaagtcggccaagaaagacaaagacccagtgaacaaatct 141
|||||||| |||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct: 116441599 aagaagaaaaaagatgctggaaagtcagccaagaaagacaaagacccagtgaacaaatct 116441658
Query: 142 gggggcaaggccaaaaagaagaagtggtccaaaggcaaagttcgggacaagctcaataac 201
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 116441659 gggggcaaggcccaaaagaagaagtggtccaaaggcaaagtttgggacaagctcaataac 116441718
Query: 202 ctagtcttgtttgacaaagcgacatatgacaaactctgtaaagaagttcccaactataag 261
||||||| ||||||||||||||| ||||||||||||| ||| ||||||||||||||||||
Sbjct: 116441719 ctagtctcgtttgacaaagcgacgtatgacaaactctataa-gaagttcccaactataag 116441777
Query: 262 cttataactccagctgttgtctctgagagactgaagattcgtggttctctggccagggca 321
||||||| |||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 116441778 cttataatcccagctattatctctgagagactgaagattcgtggttctctggccagggca 116441837
Query: 322 gcccttcaggaactcctgagcaaaggacttattaaactggtttcaaagcacagagctcaa 381
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116441838 gcccttcagaaactcctgagcaaaggacttattaaactggtttcaaagcacagagctcaa 116441897
Query: 382 gtaatttacacccgaaataccaagggtggagatgccccagctgctggagaagatgcataa 441
|||||||||||| |||| ||||||||| ||||||||||||||||||||||| ||||||||
Sbjct: 116441898 gtaatttacacctgaaacaccaagggtagagatgccccagctgctggagaacatgcataa 116441957
Query: 442 acaggtccaaccaactgtacactgtacattttgaaaaataaaacttta 489
|||| ||| |||||||||||||||||| |||| |||||||||||||||
Sbjct: 116441958 acagttcccaccaactgtacactgtacgtttttaaaaataaaacttta 116442005
>Sscrofa_Chr10
|| Length = 79102373
Score = 615 bits (310), Expect = e-173
Identities = 442/485 (91%), Gaps = 2/485 (0%)
Strand = Plus / Plus
Query: 5 ctttctgtccgacatcttagcgaggaggcactactggtagctgctctcccggcttcgcta 64
||||||||||||||||||||||||| ||| | | | |||||||| |||||||| |||
Sbjct: 45345234 ctttctgtccgacatcttagcgaggtggctgttccagcagctgctcccccggctttgctc 45345293
Query: 65 tgccgcccaaggacgacaagaagaagaaagatgccggaaagtcggccaagaaagacaaag 124
|||| ||||||| | ||||||| ||||||||| || ||||||| |||||| |||||||||
Sbjct: 45345294 tgccacccaaggtcaacaagaaaaagaaagatcccagaaagtcagccaaggaagacaaag 45345353
Query: 125 acccagtgaacaaatctgggggcaaggccaaaaagaagaagtggtccaaaggcaaagttc 184
|||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||
Sbjct: 45345354 acccagtgaacaaatctgggggcaaggccaaaaaaaa--agtggtccaaaggcaaaattc 45345411
Query: 185 gggacaagctcaataacctagtcttgtttgacaaagcgacatatgacaaactctgtaaag 244
|||||||| ||||| |||||||||||||||||||| ||| |||||||||||||||||||
Sbjct: 45345412 gggacaaggtcaattgcctagtcttgtttgacaaagtgacgtatgacaaactctgtaaag 45345471
Query: 245 aagttcccaactataagcttataactccagctgttgtctctgagagactgaagattcgtg 304
|| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct: 45345472 aaattcccaactataagcttataaccccagctgttgtctctgagagactgaagattcatg 45345531
Query: 305 gttctctggccagggcagcccttcaggaactcctgagcaaaggacttattaaactggttt 364
|||||||||||||||||||||||||||| ||||||||||| |||||| ||||||||||||
Sbjct: 45345532 gttctctggccagggcagcccttcaggagctcctgagcaagggactttttaaactggttt 45345591
Query: 365 caaagcacagagctcaagtaatttacacccgaaataccaagggtggagatgccccagctg 424
||||||||||||| ||||||||||||||| |||| ||||||||||||||||||| | ||
Sbjct: 45345592 caaagcacagagcccaagtaatttacacctgaaacaccaagggtggagatgccctggttg 45345651
Query: 425 ctggagaagatgcataaacaggtccaaccaactgtacactgtacattttgaaaaataaaa 484
|||||||||||| |||||||||| | |||||||||||||| |||||||||||||||||||
Sbjct: 45345652 ctggagaagatgtataaacaggttccaccaactgtacactttacattttgaaaaataaaa 45345711
Query: 485 cttta 489
|||||
Sbjct: 45345712 cttta 45345716
>Sscrofa_Chr18
|| Length = 61220071
Score = 587 bits (296), Expect = e-165
Identities = 440/485 (90%), Gaps = 6/485 (1%)
Strand = Plus / Plus
Query: 6 tttctgtccgacatcttagcgaggaggc-actactggtagctgctctcccggcttcgcta 64
||||||||| |||||||||||||| ||| ||| || ||||||||||||||||||||||
Sbjct: 16437217 tttctgtccaacatcttagcgaggcggctact-ctaccagctgctctcccggcttcgcta 16437275
Query: 65 tgccgcccaaggacgacaagaagaagaaagatgccggaaagtcggccaagaaagacaaag 124
|||| ||||||||| | || ||||||||||||||| |||||| | |||||||||||||||
Sbjct: 16437276 tgccacccaaggacaataacaagaagaaagatgccagaaagttgaccaagaaagacaaag 16437335
Query: 125 acccagtgaacaaatctgggggcaaggccaaaaagaagaagtggtccaaaggcaaagttc 184
|||||||||||||| |||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct: 16437336 acccagtgaacaaacctggggacaaggccgaaaagaagaagtggtccaaaggcaaagttc 16437395
Query: 185 gggacaagctcaataacctagtcttgtttgacaaagcgacatatgacaaactctgtaaag 244
|||||||| |||||| |||||||||||||||||||| |||||||||||| ||||||||||
Sbjct: 16437396 gggacaaggtcaatagcctagtcttgtttgacaaagtgacatatgacaagctctgtaaag 16437455
Query: 245 aagttcccaactataagcttataactccagctgttgtctctgagagactgaagattcgtg 304
| ||| ||||||||||||| ||||| || ||||| |||||||||| ||||| |||| |||
Sbjct: 16437456 aggtttccaactataagctcataacccctgctgtcgtctctgagaaactgaggatttgtg 16437515
Query: 305 gttctctggccagggcagcccttcaggaactcctgagcaaaggacttattaaactggttt 364
||||||||| |||||||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct: 16437516 gttctctggtcagggcagcccttcaggagctcctgagctaaggacttattaaactggttt 16437575
Query: 365 caaagcacagagctcaagtaatttacacccgaaataccaagggtggagatgccccagctg 424
||||||||||||||| |||||||||||||||||| |||||||||||||||||||| ||||
Sbjct: 16437576 caaagcacagagctcgagtaatttacacccgaaacaccaagggtggagatgccccggctg 16437635
Query: 425 ctggagaagatgcataaacaggtccaaccaactgtacactgtacattttgaaaaataaaa 484
|| |||||||||||| ||||||||| |||| || |||||||| ||||||||||||||
Sbjct: 16437636 ctagagaagatgcatgaacaggtcccacca----tatactgtacactttgaaaaataaaa 16437691
Query: 485 cttta 489
|||||
Sbjct: 16437692 cttta 16437696
>Sscrofa_Chr13
|| Length = 218635234
Score = 571 bits (288), Expect = e-160
Identities = 433/480 (90%), Gaps = 1/480 (0%)
Strand = Plus / Minus
Query: 5 ctttctgtccgacatcttagcgaggaggcactactggtagctgctctcccggcttcgcta 64
||||||||||||||||||||| ||| |||||| || ||| | |||||||||||| ||||
Sbjct: 34216767 ctttctgtccgacatcttagccaggtggcacttctagtatccgctctcccggctgtgcta 34216708
Query: 65 tgccgcccaaggacgacaagaagaagaaagatgccggaaagtcggccaagaaagacaaag 124
||||| |||||| |||||||||| ||||||||||| | || |||||||||||||||||||
Sbjct: 34216707 tgccggccaagggcgacaagaaggagaaagatgccaggaattcggccaagaaagacaaag 34216648
Query: 125 acccagtgaacaaatctgggggcaaggccaaaaagaagaagtggtccaaaggcaaagttc 184
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct: 34216647 acccagtgaacaaatctgggggcaagtccaaaaagaagaagtggtccaaaggcaaatttc 34216588
Query: 185 gggacaagctcaataacctagtcttgtttgacaaagcgacatatgacaaactctgtaaag 244
||||||||||||||||||||||| ||||||||||||| |||| |||||||||||||||||
Sbjct: 34216587 gggacaagctcaataacctagtcctgtttgacaaagcaacatctgacaaactctgtaaag 34216528
Query: 245 aagttcccaactataagcttataactccagctgttgtctctgagagactgaagattcgtg 304
||||||||||||||||||||||||||| |||||| |||||||||||| ||||||| |||
Sbjct: 34216527 aagttcccaactataagcttataactctagctgtcgtctctgagagatggaagatttgtg 34216468
Query: 305 gttctctggccagggcagcccttcaggaactcctgagcaaaggacttattaaactggttt 364
||||||||||||||||||||||||| || ||||||||| ||||| || |||| |||| ||
Sbjct: 34216467 gttctctggccagggcagcccttca-gagctcctgagccaaggagttgttaagctggctt 34216409
Query: 365 caaagcacagagctcaagtaatttacacccgaaataccaagggtggagatgccccagctg 424
||| ||||||||||| |||||||||||||| ||| ||||||| |||||||||||| ||||
Sbjct: 34216408 caatgcacagagctccagtaatttacacccaaaacaccaaggctggagatgccccggctg 34216349
Query: 425 ctggagaagatgcataaacaggtccaaccaactgtacactgtacattttgaaaaataaaa 484
||||||||||| |||| ||||||| ||||||| | | || |||| |||||||||||||
Sbjct: 34216348 ctggagaagatacatacacaggtcacaccaactccatattgcacatcttgaaaaataaaa 34216289
>Sscrofa_Chr09
|| Length = 153670197
Score = 422 bits (213), Expect = e-115
Identities = 299/327 (91%), Gaps = 3/327 (0%)
Strand = Plus / Plus
Query: 102 aaagtcggccaagaaagacaaagacccagtgaacaaatctgggggcaaggccaaaaagaa 161
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 98740340 aaagtcagccaagaaagacaaagaccccatgaacaaatctgggggcaaggccaaaaaga- 98740398
Query: 162 gaagtggtccaaaggcaaagttcgggacaagctcaataacctagtcttgtttgacaaagc 221
|||||||||||||||||||| |||| ||||||||||||||||||||| ||||||||
Sbjct: 98740399 --agtggtccaaaggcaaagtttgggataagctcaataacctagtcttgactgacaaagt 98740456
Query: 222 gacatatgacaaactctgtaaagaagttcccaactataagcttataactccagctgttgt 281
|||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |
Sbjct: 98740457 gacatatgacaaactctgtaaacaagttcccaactataagcttataaccccagctgtcat 98740516
Query: 282 ctctgagagactgaagattcgtggttctctggccagggcagcccttcaggaactcctgag 341
|||| ||||||||||||| |||||||| ||||||||||| |||| |||||| ||||||||
Sbjct: 98740517 ctctcagagactgaagatacgtggttccctggccagggctgcccctcaggagctcctgag 98740576
Query: 342 caaaggacttattaaactggtttcaaagcacagagctcaagtaatttacacccgaaatac 401
||||||||||||||||||||||||||||||||||| |||||| ||||| || |||| ||
Sbjct: 98740577 caaaggacttattaaactggtttcaaagcacagagttcaagttatttatactagaaacac 98740636
Query: 402 caagggtggagatgccccagctgctgg 428
|||| ||||||||||||||||||||||
Sbjct: 98740637 caagagtggagatgccccagctgctgg 98740663
Score = 422 bits (213), Expect = e-115
Identities = 299/327 (91%), Gaps = 3/327 (0%)
Strand = Plus / Plus
Query: 102 aaagtcggccaagaaagacaaagacccagtgaacaaatctgggggcaaggccaaaaagaa 161
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 98820443 aaagtcagccaagaaagacaaagaccccatgaacaaatctgggggcaaggccaaaaaga- 98820501
Query: 162 gaagtggtccaaaggcaaagttcgggacaagctcaataacctagtcttgtttgacaaagc 221
|||||||||||||||||||| |||| ||||||||||||||||||||| ||||||||
Sbjct: 98820502 --agtggtccaaaggcaaagtttgggataagctcaataacctagtcttgactgacaaagt 98820559
Query: 222 gacatatgacaaactctgtaaagaagttcccaactataagcttataactccagctgttgt 281
|||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |
Sbjct: 98820560 gacatatgacaaactctgtaaacaagttcccaactataagcttataaccccagctgtcat 98820619
Query: 282 ctctgagagactgaagattcgtggttctctggccagggcagcccttcaggaactcctgag 341
|||| ||||||||||||| |||||||| ||||||||||| |||| |||||| ||||||||
Sbjct: 98820620 ctctcagagactgaagatacgtggttccctggccagggctgcccctcaggagctcctgag 98820679
Query: 342 caaaggacttattaaactggtttcaaagcacagagctcaagtaatttacacccgaaatac 401
||||||||||||||||||||||||||||||||||| |||||| ||||| || |||| ||
Sbjct: 98820680 caaaggacttattaaactggtttcaaagcacagagttcaagttatttatactagaaacac 98820739
Query: 402 caagggtggagatgccccagctgctgg 428
|||| ||||||||||||||||||||||
Sbjct: 98820740 caagagtggagatgccccagctgctgg 98820766
Score = 363 bits (183), Expect = 1e-97
Identities = 186/187 (99%)
Strand = Plus / Minus
Query: 161 agaagtggtccaaaggcaaagttcgggacaagctcaataacctagtcttgtttgacaaag 220
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 51276313 agaagtggtccaaaggcaaagttcgggacaagcttaataacctagtcttgtttgacaaag 51276254
Query: 221 cgacatatgacaaactctgtaaagaagttcccaactataagcttataactccagctgttg 280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51276253 cgacatatgacaaactctgtaaagaagttcccaactataagcttataactccagctgttg 51276194
Query: 281 tctctgagagactgaagattcgtggttctctggccagggcagcccttcaggaactcctga 340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51276193 tctctgagagactgaagattcgtggttctctggccagggcagcccttcaggaactcctga 51276134
Query: 341 gcaaagg 347
|||||||
Sbjct: 51276133 gcaaagg 51276127
Score = 357 bits (180), Expect = 8e-96
Identities = 373/436 (85%), Gaps = 11/436 (2%)
Strand = Plus / Plus
Query: 43 agctgctctcccggcttcgctatgccgcccaaggacgacaagaagaagaaagatgccgga 102
||||||||||||||||| | ||||||| ||||| |||||||| ||||||||| ||
Sbjct: 28768885 agctgctctcccggcttttccctgccgcctaaggatgacaagaa----aaagatgccaga 28768940
Query: 103 aagtcggccaagaaagacaaagacccagtgaacaaatctgggggcaaggccaaaaagaag 162
|||||||||||||||| ||||||||||||||||||||| || || ||||||||||
Sbjct: 28768941 aagtcggccaagaaag------acccagtgaacaaatctggggacagggacaaaaagaag 28768994
Query: 163 aagtggtccaaaggcaaagttcgggacaagctcaataacctagtcttgtttgacaaagcg 222
|||||||||||||||||||||| ||||||| ||||||| |||||||||| ||||||||||
Sbjct: 28768995 aagtggtccaaaggcaaagttcaggacaaggtcaataatctagtcttgtgtgacaaagcg 28769054
Query: 223 acatatgacaaactctgtaaagaagttcccaactataagcttataactccagctgttgtc 282
||||||||||||| |||||||||| | | || ||||||| ||||| |||||||| |
Sbjct: 28769055 acatatgacaaacgctgtaaagaa-tgcttaagtataagcgtataaggccagctgtcacc 28769113
Query: 283 tctgagagactgaagattcgtggttctctggccagggcagcccttcaggaactcctgagc 342
|||||||||| |||||| ||||| || |||| || ||||||||||||||| |||| ||||
Sbjct: 28769114 tctgagagacggaagatccgtggctccctggtcaaggcagcccttcaggagctcccgagc 28769173
Query: 343 aaaggacttattaaactggtttcaaagcacagagctcaagtaatttacacccgaaatacc 402
|||||||||||| ||||| || |||||| |||||||||||| ||||||||| |||| |||
Sbjct: 28769174 aaaggacttattcaactgcttccaaagctcagagctcaagtcatttacaccagaaacacc 28769233
Query: 403 aagggtggagatgccccagctgctggagaagatgcataaacaggtccaaccaactgtaca 462
|||| ||| ||||||| | |||| ||||||||||| ||||||||| || ||||||||
Sbjct: 28769234 aaggatggcgatgccctggaggctgaagaagatgcatgaacaggtcctgccgactgtaca 28769293
Query: 463 ctgtacattttgaaaa 478
|||||| |||||||||
Sbjct: 28769294 ctgtacgttttgaaaa 28769309
Score = 337 bits (170), Expect = 8e-90
Identities = 371/436 (85%), Gaps = 14/436 (3%)
Strand = Plus / Minus
Query: 43 agctgctctcccggcttcgctatgccgcccaaggacgacaagaagaagaaagatgccgga 102
||||||||||||||||| || ||||||||||||| |||||||| ||||||||| ||
Sbjct: 28910145 agctgctctcccggctttgccctgccgcccaaggatgacaagaa----aaagatgccaga 28910090
Query: 103 aagtcggccaagaaagacaaagacccagtgaacaaatctgggggcaaggccaaaaagaag 162
||||| |||||||||||| ||||||||| ||||||||| || |||||||||||||
Sbjct: 28910089 aagtcagccaagaaagac------ccagtgaaccaatctggggacagggccaaaaagaag 28910036
Query: 163 aagtggtccaaaggcaaagttcgggacaagctcaataacctagtcttgtttgacaaagcg 222
||||||||||||||||||| ||||||| ||||||| |||||||||| ||||||||||
Sbjct: 28910035 ---tggtccaaaggcaaagttcaggacaaggtcaataatctagtcttgtgtgacaaagcg 28909979
Query: 223 acatatgacaaactctgtaaagaagttcccaactataagcttataactccagctgttgtc 282
||||||||||||| |||||||||| | | || ||||||| ||||| |||||||| |
Sbjct: 28909978 acatatgacaaacgctgtaaagaa-tgcttaagtataagcgtataaggccagctgtcacc 28909920
Query: 283 tctgagagactgaagattcgtggttctctggccagggcagcccttcaggaactcctgagc 342
|||||||||| |||||| ||||| || |||| || ||||||||||||||| |||| ||||
Sbjct: 28909919 tctgagagacggaagatccgtggctccctggtcaaggcagcccttcaggagctcccgagc 28909860
Query: 343 aaaggacttattaaactggtttcaaagcacagagctcaagtaatttacacccgaaatacc 402
|||||||||||| ||||| || |||||| |||||||||||| ||||||||| |||| |||
Sbjct: 28909859 aaaggacttattcaactgcttccaaagctcagagctcaagtcatttacaccagaaacacc 28909800
Query: 403 aagggtggagatgccccagctgctggagaagatgcataaacaggtccaaccaactgtaca 462
|||| ||| ||||||| || || | ||||||||||| ||||||||| || ||||||||
Sbjct: 28909799 aaggatggcgatgccctggcggccgaagaagatgcatgaacaggtcctgccgactgtaca 28909740
Query: 463 ctgtacattttgaaaa 478
|||||| |||||||||
Sbjct: 28909739 ctgtacgttttgaaaa 28909724
Score = 196 bits (99), Expect = 2e-47
Identities = 102/103 (99%)
Strand = Plus / Minus
Query: 345 aggacttattaaactggtttcaaagcacagagctcaagtaatttacacccgaaataccaa 404
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 51274732 aggacttattaaactggtttcaaagcacagagctcaagtaatttacacgcgaaataccaa 51274673
Query: 405 gggtggagatgccccagctgctggagaagatgcataaacaggt 447
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51274672 gggtggagatgccccagctgctggagaagatgcataaacaggt 51274630
Score = 192 bits (97), Expect = 3e-46
Identities = 97/97 (100%)
Strand = Plus / Minus
Query: 66 gccgcccaaggacgacaagaagaagaaagatgccggaaagtcggccaagaaagacaaaga 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51276897 gccgcccaaggacgacaagaagaagaaagatgccggaaagtcggccaagaaagacaaaga 51276838
Query: 126 cccagtgaacaaatctgggggcaaggccaaaaagaag 162
|||||||||||||||||||||||||||||||||||||
Sbjct: 51276837 cccagtgaacaaatctgggggcaaggccaaaaagaag 51276801
Score = 123 bits (62), Expect = 2e-25
Identities = 62/62 (100%)
Strand = Plus / Minus
Query: 5 ctttctgtccgacatcttagcgaggaggcactactggtagctgctctcccggcttcgcta 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51277189 ctttctgtccgacatcttagcgaggaggcactactggtagctgctctcccggcttcgcta 51277130
Query: 65 tg 66
||
Sbjct: 51277129 tg 51277128
Score = 95.6 bits (48), Expect = 5e-17
Identities = 51/52 (98%)
Strand = Plus / Minus
Query: 441 aacaggtccaaccaactgtacactgtacattttgaaaaataaaactttaatt 492
|||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 51274549 aacaggtccaaccagctgtacactgtacattttgaaaaataaaactttaatt 51274498
>gb|JH118744.1| Sus scrofa unplaced genomic scaffold ChrUScaf2198
Length = 143512
Score = 359 bits (181), Expect = 2e-96
Identities = 279/309 (90%), Gaps = 2/309 (0%)
Strand = Plus / Plus
Query: 6 tttctgtccgacatcttagcgaggaggc-actactggtagctgctctcccggcttcgcta 64
||||||||| |||||||||||||| ||| ||| || ||||||||||||||||||||||
Sbjct: 130370 tttctgtccaacatcttagcgaggcggctact-ctaccagctgctctcccggcttcgcta 130428
Query: 65 tgccgcccaaggacgacaagaagaagaaagatgccggaaagtcggccaagaaagacaaag 124
|||| ||||||||| | || ||||||||||||||| |||||| | |||||||||||||||
Sbjct: 130429 tgccacccaaggacaataacaagaagaaagatgccagaaagttgaccaagaaagacaaag 130488
Query: 125 acccagtgaacaaatctgggggcaaggccaaaaagaagaagtggtccaaaggcaaagttc 184
|||||||||||||| |||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct: 130489 acccagtgaacaaacctggggacaaggccgaaaagaagaagtggtccaaaggcaaagttc 130548
Query: 185 gggacaagctcaataacctagtcttgtttgacaaagcgacatatgacaaactctgtaaag 244
|||||||| |||||| |||||||||||||||||||| |||||||||||| ||||||||||
Sbjct: 130549 gggacaaggtcaatagcctagtcttgtttgacaaagtgacatatgacaagctctgtaaag 130608
Query: 245 aagttcccaactataagcttataactccagctgttgtctctgagagactgaagattcgtg 304
| ||| ||||||||||||| ||||| || ||||| |||||||||| ||||| |||| |||
Sbjct: 130609 aggtttccaactataagctcataacccctgctgtcgtctctgagaaactgaggatttgtg 130668
Query: 305 gttctctgg 313
|||||||||
Sbjct: 130669 gttctctgg 130677
>Sscrofa_Chr06
|| Length = 157765593
Score = 299 bits (151), Expect = 2e-78
Identities = 225/249 (90%), Gaps = 3/249 (1%)
Strand = Plus / Plus
Query: 241 aaagaagttcccaactataagcttataactccagctgttgtctctgagagactgaagatt 300
|||||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||
Sbjct: 71999763 aaagaagttcccaactttaatgttataaccccagctgttgtctctgagagactgaagatt 71999822
Query: 301 cgtggttctctggccagggcagcccttcaggaactcctgagcaaaggacttattaaactg 360
|||| || |||| |||||||||||||||||| ||||||||||||| ||||| | | |||
Sbjct: 71999823 tgtggctccctgggcagggcagcccttcaggagctcctgagcaaagaacttactcacctg 71999882
Query: 361 gtttcaaagcacagagctcaagtaatttacacccgaaataccaagggtggagatgcccca 420
|||||||||||||||||||| |||||||||||| |||| |||||||||||||||| ||||
Sbjct: 71999883 gtttcaaagcacagagctcatgtaatttacaccagaaacaccaagggtggagatggccca 71999942
Query: 421 gctgctggagaagatgcataaacaggtccaaccaactgtacactgtacattttgaaaaat 480
|||||| |||||||||| ||||||||| |||||||||||| ||||||||||||||||
Sbjct: 71999943 gctgct---gaagatgcatgaacaggtcccaccaactgtacatggtacattttgaaaaat 71999999
Query: 481 aaaacttta 489
|||||||||
Sbjct: 72000000 aaaacttta 72000008
Score = 190 bits (96), Expect = 1e-45
Identities = 187/216 (86%), Gaps = 6/216 (2%)
Strand = Plus / Plus
Query: 41 gtagctgctctcccggcttcgctatgccgcccaaggacgacaagaagaagaaagatgccg 100
||||||| |||||| |||||||| ||| ||||||||||||||||||||| ||||| |
Sbjct: 71999306 gtagctgttctcccagcttcgctgtgctgcccaaggacgacaagaagaac---gatgctg 71999362
Query: 101 gaaagtcggccaagaaagacaaagacccagtgaacaaatctgggggcaaggccaaaaaga 160
||| ||| |||||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct: 71999363 gaacatcgtccaagaaaaacaaagacccagtgaacaaatctggggctgaggccaaaaaga 71999422
Query: 161 agaagtggtccaaaggcaaagttcgggacaagctcaataacctagtcttgtttgacaaag 220
| ||| | || |||||||||| || ||||||||||||||||||||||| ||||||| |||
Sbjct: 71999423 aaaagcgatctaaaggcaaagctcaggacaagctcaataacctagtctcgtttgaccaag 71999482
Query: 221 cgacatatgacaaactctgtaaagaagttcccaact 256
||||||| | |||||||||||||||||||||||
Sbjct: 71999483 tgacatat---acactctgtaaagaagttcccaact 71999515
Score = 165 bits (83), Expect = 6e-38
Identities = 175/205 (85%), Gaps = 3/205 (1%)
Strand = Plus / Plus
Query: 5 ctttctgtccgacatcttagcgaggaggcactactggtagctgctctcccggcttcgcta 64
|||| |||| ||||||| ||||||| |||| | || ||||||||||| || | || ||||
Sbjct: 41654879 ctttttgtctgacatctcagcgaggtggcagttctagtagctgctctacctgattagcta 41654938
Query: 65 tgccgcccaaggacgacaagaagaagaaagatgccggaaagtcggccaagaaagacaaag 124
||| || ||| ||| ||||||||||| |||||| | |||| |||||||||||||||||
Sbjct: 41654939 tgctgctcaaagacatgaagaagaagaaggatgccagcaagttggccaagaaagacaaag 41654998
Query: 125 acccagtgaacaaatctgggggcaaggccaaaaagaagaagtggtccaaaggcaaagttc 184
||||||||||||| | |||||||||||||| |||||||||||||||| ||||||||
Sbjct: 41654999 acccagtgaacaacaccaggggcaaggccaaa---aagaagtggtccaaagacaaagttc 41655055
Query: 185 gggacaagctcaataacctagtctt 209
||||||||||||||||||||||||
Sbjct: 41655056 aggacaagctcaataacctagtctt 41655080
Score = 95.6 bits (48), Expect = 5e-17
Identities = 75/84 (89%)
Strand = Plus / Plus
Query: 195 caataacctagtcttgtttgacaaagcgacatatgacaaactctgtaaagaagttcccaa 254
||||||||||||||||| ||||||||| ||| |||||||||||||||| || ||||||||
Sbjct: 41655310 caataacctagtcttgtatgacaaagcaacacatgacaaactctgtaaggaggttcccaa 41655369
Query: 255 ctataagcttataactccagctgt 278
||| ||| |||||| ||||||||
Sbjct: 41655370 ctacaagtttataatcccagctgt 41655393
>gb|GL892484.1| Sus scrofa unplaced genomic scaffold chrU_scaffold1344
Length = 78773
Score = 293 bits (148), Expect = 1e-76
Identities = 309/359 (86%), Gaps = 4/359 (1%)
Strand = Plus / Plus
Query: 57 cttcgctatgccgcccaaggacgacaagaagaagaaagatgccggaaagtcggccaagaa 116
|||| |||||| ||||||||| || ||||||||||||||||| ||||||||||||||
Sbjct: 65894 cttcactatgctgcccaaggatgatgagaagaagaaagatgcctagaagtcggccaagaa 65953
Query: 117 agacaaagacccagtgaacaaatctgggggcaaggccaaaaagaagaagtggtccaaagg 176
| ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct: 65954 aaacaaagatccagtgaacaaatctgggggcaaggccgaaaagaagaagtggtccaagga 66013
Query: 177 caaagttcgggacaagctcaataacctagtcttgtttgacaaagcgacatatgacaaact 236
|| ||||| |||||||||||||| |||| ||||||| | | || |||||||||||||||
Sbjct: 66014 cagagttcaggacaagctcaatacccta-tcttgttgg--atagagacatatgacaaact 66070
Query: 237 ctgtaaagaagttcccaactataagcttataactccagctgttgtctctgagagactgaa 296
|||||| | ||||||| | | ||||| ||| | | | || | ||||||||||||||||
Sbjct: 66071 ctgtaaggtggttcccagccacaagctcatagc-ctaactctcatctctgagagactgaa 66129
Query: 297 gattcgtggttctctggccagggcagcccttcaggaactcctgagcaaaggacttattaa 356
||||| |||| ||||| ||||||||||||||||||| ||||| || ||||||||||||||
Sbjct: 66130 gattcatggtgctctgaccagggcagcccttcaggagctccttagtaaaggacttattaa 66189
Query: 357 actggtttcaaagcacagagctcaagtaatttacacccgaaataccaagggtggagatg 415
|||||||| ||||||||||| ||||||| | |||| |||| ||||||||||||||||
Sbjct: 66190 gctggtttctaagcacagagcccaagtaacctgcaccagaaacaccaagggtggagatg 66248
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 41,849,597
Number of extensions: 317
Number of successful extensions: 317
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 291
Number of HSP's successfully gapped: 34
Length of query: 1089
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1068
Effective length of database: 2,808,413,156
Effective search space: 2999385250608
Effective search space used: 2999385250608
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)