Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002307
(1199 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001068968.1| testican-1 [Bos taurus]. 318 6e-87
Alignment gi|NP_001094585.1| testican-2 [Bos taurus]. 297 1e-80
Alignment gi|NP_001029474.1| SPARC-like protein 1 [Bos taurus]. 64 3e-10
Alignment gi|NP_776889.1| SPARC [Bos taurus]. 57 4e-08
Alignment gi|XP_002694239.1| PREDICTED: neurexin 2-like [Bos taurus]. 55 1e-07
Alignment gi|XP_604151.4| PREDICTED: neurexin 2-like [Bos taurus]. 55 1e-07
Alignment gi|NP_001017950.1| follistatin-related protein 1 precursor [Bos... 51 2e-06
Alignment gi|XP_001254149.2| PREDICTED: follistatin-like 1, partial [Bos ... 51 2e-06
Alignment gi|XP_002689233.1| PREDICTED: follistatin-like 4 [Bos taurus]. 51 2e-06
Alignment gi|NP_001192405.1| tomoregulin-1 [Bos taurus]. 49 7e-06
>ref|NP_001068968.1| testican-1 [Bos taurus].
Length = 442
Score = 318 bits (815), Expect = 6e-87
Identities = 148/279 (53%), Positives = 187/279 (67%), Gaps = 3/279 (1%)
Frame = +1
Query: 370 PAGGSFLDDKQWLSTVSQYDREAGQWNRFRDEVEDDYFRTWSPGRAFDQALDPAKDPCLN 549
P G+FLD+ QWLSTVS+Y+R+ WNRFRDEVEDDYFR W+P + FDQALDPAKDPCL
Sbjct: 33 PNNGNFLDNDQWLSTVSEYERDK-YWNRFRDEVEDDYFRNWNPNKPFDQALDPAKDPCLK 91
Query: 550 MKCGRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGSPPST---CRQCLGVSMSP 720
+KC H+VC+ Q TA+C+ ++ L K HK G PS C+ C +
Sbjct: 92 VKCSPHKVCVTQDYQTALCVSRKHLLPRQKKGTVVHKHWVG--PSNLVKCKPCPAAQSAM 149
Query: 721 VCGSDGHAYSSQCKLEYQACVLGKQISVRCEGHCPCPSDTTRSSRGNVKRVCTSLEFREV 900
VCGSDGH Y+S+CKLE+ AC G+ ++ C+G CPC + K CT E R +
Sbjct: 150 VCGSDGHTYTSKCKLEFHACSTGRSLTTLCDGPCPCLPEPEPPKHKAEKNACTDKELRNL 209
Query: 901 STRLRDWFKALHESGSQNKKAKGSLRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLD 1080
++RL+DWF ALHE ++ S + RFDTSILPICKDSLGWMFN+LD NYDLLLD
Sbjct: 210 ASRLKDWFGALHEDANRVINPTSS-ETAQGRFDTSILPICKDSLGWMFNKLDMNYDLLLD 268
Query: 1081 QSELGSIYLDKNEQCTEAFFNSCDTYRDRSISNNEWCYC 1197
SE+ +IYLDK E C + FNSCD+++D +SNNEWCYC
Sbjct: 269 HSEINAIYLDKYEPCIKPLFNSCDSFKDGKLSNNEWCYC 307
>ref|NP_001094585.1| testican-2 [Bos taurus].
Length = 424
Score = 297 bits (761), Expect = 1e-80
Identities = 135/274 (49%), Positives = 181/274 (66%), Gaps = 1/274 (0%)
Frame = +1
Query: 379 GSFLDDKQWLSTVSQYDREAGQWNRFRDEVEDDYFRTWSPGRAFDQALDPAKDPCLNMKC 558
G+F++D+QWLS++SQY + WNRFRDEVEDDY ++W + D+ALD KDPC +KC
Sbjct: 36 GNFMEDEQWLSSISQYSGKIKHWNRFRDEVEDDYIKSWEDNQQGDEALDTTKDPCQKVKC 95
Query: 559 GRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGSPPSTCRQCLGVSMSPVCGSDG 738
RH+VCI QG A+CI +++L H +K + G+ + C+ C ++ VCGSDG
Sbjct: 96 SRHKVCIAQGYQRAMCISRKKLEHRIKQPAV---KLHGNKDTICKPCHMAHLASVCGSDG 152
Query: 739 HAYSSQCKLEYQACVLGKQISVRCEGHCPCPSDTTRSSRGNVK-RVCTSLEFREVSTRLR 915
H YSS CKLE QAC+ KQ++VRCEG CPCP++ +S + K CT + ++ RLR
Sbjct: 153 HTYSSVCKLEQQACLSSKQLTVRCEGPCPCPTEQAATSTSDSKPETCTGQDLADLGDRLR 212
Query: 916 DWFKALHESGSQNKKAKGSLRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLDQSELG 1095
DWF+ LHE+ QN A P S D S+ CKDS+GWMF++LDT+ DL LDQ+EL
Sbjct: 213 DWFQLLHENSKQNGSANSGASP-ASGLDKSLGASCKDSIGWMFSKLDTSADLFLDQTELA 271
Query: 1096 SIYLDKNEQCTEAFFNSCDTYRDRSISNNEWCYC 1197
+I LDK E C FFNSCDTY+D +S EWC+C
Sbjct: 272 AINLDKYEVCIRPFFNSCDTYKDGRVSTAEWCFC 305
>ref|NP_001029474.1| SPARC-like protein 1 [Bos taurus].
Length = 654
Score = 63.9 bits (154), Expect = 3e-10
Identities = 62/254 (24%), Positives = 93/254 (36%), Gaps = 33/254 (12%)
Frame = +1
Query: 535 DPCLNMKCGRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGSPPSTCRQCLGVSM 714
D CL+ +C R +C G C+ Q P++C +
Sbjct: 421 DSCLSFQCKRGHICKADQHGKPYCVCQ--------------------DPASCPPTK--LL 458
Query: 715 SPVCGSDGHAYSSQCKLEYQACVL-----GKQISVRCEGHCPCPSDTTRSSRGNVKRVCT 879
VCG+D Y+S C L C + G Q+ + G C CT
Sbjct: 459 DQVCGTDNQTYASSCHLFATKCRMERTKKGHQLHLDYFGAC------------KTIPACT 506
Query: 880 SLEFREVSTRLRDWFKAL---------HESGSQNKKAKGSLRP---ERSRF---DTSILP 1014
E + R+RDW K + SG N+K + ++ + R D SI
Sbjct: 507 DFEVTQFPLRMRDWLKNILVQLYEPNPEHSGYLNEKQRNKVKKIYLDEKRLLAGDHSIDL 566
Query: 1015 ICKD----------SLGWMFNRLDTN-YDLLLDQSELGSIY--LDKNEQCTEAFFNSCDT 1155
+ +D + W F+ LD + D +L SEL + L E C FF CD
Sbjct: 567 LLRDFKKNYHMYVYPVHWQFSELDQHPRDRVLTHSELAPLRASLVPMEHCITRFFEECDP 626
Query: 1156 YRDRSISNNEWCYC 1197
+D+ I+ EW +C
Sbjct: 627 NKDKHITLQEWGHC 640
>ref|NP_776889.1| SPARC [Bos taurus].
Length = 304
Score = 56.6 bits (135), Expect = 4e-08
Identities = 59/256 (23%), Positives = 91/256 (35%), Gaps = 33/256 (12%)
Frame = +1
Query: 529 AKDPCLNMKCGRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGSPPSTCRQCLGV 708
A++PC N C +VC + + T +C+ Q P++C +G
Sbjct: 68 AENPCQNHHCKHGKVCELDENNTPMCVCQ--------------------DPTSCPAPIG- 106
Query: 709 SMSPVCGSDGHAYSSQCKLEYQACVL-----GKQISVRCEGHCPCPSDTTRSSRGNVKRV 873
VC +D + S C C L G ++ + G C
Sbjct: 107 EFEKVCSNDNKTFDSSCHFFATKCTLEGTKKGHKLHLDYIGPCKYIPP------------ 154
Query: 874 CTSLEFREVSTRLRDWFK----ALHESGSQN-----------KKAKGSLRPERSRFDTSI 1008
C E E R+RDW K L+E N KK + + + D +
Sbjct: 155 CLDSELTEFPLRMRDWLKNVLVTLYERDEDNNLLTEKQKLRVKKIHENEKRLEAGCDHPV 214
Query: 1009 LPICKD----------SLGWMFNRLDTN-YDLLLDQSELGSIY--LDKNEQCTEAFFNSC 1149
+ +D + W F +LD + D L +EL + L E CT FF +C
Sbjct: 215 ELLARDFEKNYNMYIFPVHWQFGQLDQHPIDGYLSHTELAPLRAPLIPMEHCTTRFFETC 274
Query: 1150 DTYRDRSISNNEWCYC 1197
D D+ I+ +EW C
Sbjct: 275 DLDNDKYIALDEWAGC 290
>ref|XP_002694239.1| PREDICTED: neurexin 2-like [Bos taurus].
Length = 2043
Score = 55.1 bits (131), Expect = 1e-07
Identities = 38/115 (33%), Positives = 50/115 (43%), Gaps = 5/115 (4%)
Frame = +1
Query: 532 KDPCLNMKCGRHEVCIVQGSG-TAVCIGQRRLAHSVKDAGAGHKQRRGSPPSTCRQCLGV 708
+DPC N+ C C+ G TA C+ P+TC LG
Sbjct: 247 RDPCSNVTCSFGSTCVPSADGLTATCLC----------------------PATC---LGA 281
Query: 709 SMSPVCGSDGHAYSSQCKLEYQACVLGKQISVRCEGHC-PCP---SDTTRSSRGN 861
PVCGSDG Y S+C+L AC + I + +G C PC SD +R+ R N
Sbjct: 282 PEGPVCGSDGSDYPSECQLLRHACAHQENIFKKFDGPCDPCQGFLSDLSRTCRVN 336
Score = 50.1 bits (118), Expect = 4e-06
Identities = 33/90 (36%), Positives = 41/90 (45%), Gaps = 20/90 (22%)
Frame = +1
Query: 646 GAGHKQRRGSPPSTC-RQCLGVSMSPVCGSDGHAYSSQCKLEYQACVLGKQISV------ 804
GA + G C + C GV PVCGSDG Y S C+LE AC LG++I V
Sbjct: 478 GAMCAVKNGEAECACPKACSGV-YDPVCGSDGITYGSACELEATACALGREIRVARRGPC 536
Query: 805 -RC------------EGHCPCPSDTTRSSR 855
RC G C CPS+ S++
Sbjct: 537 DRCGQCRFGALCEAETGRCVCPSECVASAQ 566
>ref|XP_604151.4| PREDICTED: neurexin 2-like [Bos taurus].
Length = 2043
Score = 55.1 bits (131), Expect = 1e-07
Identities = 38/115 (33%), Positives = 50/115 (43%), Gaps = 5/115 (4%)
Frame = +1
Query: 532 KDPCLNMKCGRHEVCIVQGSG-TAVCIGQRRLAHSVKDAGAGHKQRRGSPPSTCRQCLGV 708
+DPC N+ C C+ G TA C+ P+TC LG
Sbjct: 247 RDPCSNVTCSFGSTCVPSADGLTATCLC----------------------PATC---LGA 281
Query: 709 SMSPVCGSDGHAYSSQCKLEYQACVLGKQISVRCEGHC-PCP---SDTTRSSRGN 861
PVCGSDG Y S+C+L AC + I + +G C PC SD +R+ R N
Sbjct: 282 PEGPVCGSDGSDYPSECQLLRHACAHQENIFKKFDGPCDPCQGFLSDLSRTCRVN 336
Score = 50.1 bits (118), Expect = 4e-06
Identities = 33/90 (36%), Positives = 41/90 (45%), Gaps = 20/90 (22%)
Frame = +1
Query: 646 GAGHKQRRGSPPSTC-RQCLGVSMSPVCGSDGHAYSSQCKLEYQACVLGKQISV------ 804
GA + G C + C GV PVCGSDG Y S C+LE AC LG++I V
Sbjct: 478 GAMCAVKNGEAECACPKACSGV-YDPVCGSDGITYGSACELEATACALGREIRVARRGPC 536
Query: 805 -RC------------EGHCPCPSDTTRSSR 855
RC G C CPS+ S++
Sbjct: 537 DRCGQCRFGALCEAETGRCVCPSECVASAQ 566
>ref|NP_001017950.1| follistatin-related protein 1 precursor [Bos taurus].
Length = 307
Score = 51.2 bits (121), Expect = 2e-06
Identities = 30/98 (30%), Positives = 44/98 (44%), Gaps = 3/98 (3%)
Frame = +1
Query: 646 GAGHK---QRRGSPPSTCRQCLGVSMSPVCGSDGHAYSSQCKLEYQACVLGKQISVRCEG 816
GAG + +G P C + PVCGS+G Y + C+L AC+ G +I V +G
Sbjct: 36 GAGRECAVTEKGEPTCLCIEQCKPHKRPVCGSNGKTYLNHCELHRDACLTGSKIQVDYDG 95
Query: 817 HCPCPSDTTRSSRGNVKRVCTSLEFREVSTRLRDWFKA 930
HC + S+ VC E+ R+ W +A
Sbjct: 96 HCKEKKSVSPSAS---PVVCYQSNRDELRRRIIQWLEA 130
>ref|XP_001254149.2| PREDICTED: follistatin-like 1, partial [Bos taurus].
Length = 317
Score = 51.2 bits (121), Expect = 2e-06
Identities = 30/98 (30%), Positives = 44/98 (44%), Gaps = 3/98 (3%)
Frame = +1
Query: 646 GAGHK---QRRGSPPSTCRQCLGVSMSPVCGSDGHAYSSQCKLEYQACVLGKQISVRCEG 816
GAG + +G P C + PVCGS+G Y + C+L AC+ G +I V +G
Sbjct: 16 GAGRECAVTEKGEPTCLCIEQCKPHKRPVCGSNGKTYLNHCELHRDACLTGSKIQVDYDG 75
Query: 817 HCPCPSDTTRSSRGNVKRVCTSLEFREVSTRLRDWFKA 930
HC + S+ VC E+ R+ W +A
Sbjct: 76 HCKEKKSVSPSAS---PVVCYQSNRDELRRRIIQWLEA 110
>ref|XP_002689233.1| PREDICTED: follistatin-like 4 [Bos taurus].
Length = 843
Score = 50.8 bits (120), Expect = 2e-06
Identities = 32/99 (32%), Positives = 45/99 (45%), Gaps = 1/99 (1%)
Frame = +1
Query: 670 GSPPSTCRQCLGVSMSPVCGSDGHAYSSQCKLEYQACVLGKQISVRCEGHCPCPSD-TTR 846
G P C + S PVCGSDG Y + C+L AC+LGK+I + C D T
Sbjct: 83 GEPECRCLEACRPSYVPVCGSDGRVYENHCELHRAACLLGKKIVMVRNKDCFLKGDPCTV 142
Query: 847 SSRGNVKRVCTSLEFREVSTRLRDWFKALHESGSQNKKA 963
+ +K+V +L+ R + LHE S+ A
Sbjct: 143 ADYARLKKVLLALQSR---------LQPLHEGDSRQDPA 172
>ref|NP_001192405.1| tomoregulin-1 [Bos taurus].
Length = 378
Score = 49.3 bits (116), Expect = 7e-06
Identities = 20/49 (40%), Positives = 30/49 (61%)
Frame = +1
Query: 697 CLGVSMSPVCGSDGHAYSSQCKLEYQACVLGKQISVRCEGHCPCPSDTT 843
C G S +PVC SDG +Y++ C + +C+ +QI +R GHC DT+
Sbjct: 192 CSGYSFNPVCASDGSSYNNPCFVREASCIKQEQIDIRHLGHCTDTDDTS 240
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 50,303,048
Number of extensions: 1556601
Number of successful extensions: 9782
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 9697
Number of HSP's successfully gapped: 13
Length of query: 399
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 295
Effective length of database: 14,240,222
Effective search space: 4200865490
Effective search space used: 4200865490
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002307
(1199 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_539793.2| PREDICTED: similar to Testican-3 precursor (SPA... 324 9e-89
Alignment gi|XP_850525.1| PREDICTED: similar to Testican-2 precursor (SPA... 285 5e-77
Alignment gi|XP_546155.2| PREDICTED: similar to Testican-2 precursor (SPA... 275 8e-74
Alignment gi|XP_531914.2| PREDICTED: similar to Testican-1 precursor (SPO... 249 3e-66
Alignment gi|XP_860591.1| PREDICTED: similar to SPARC-like protein 1 prec... 66 6e-11
Alignment gi|XP_535648.2| PREDICTED: similar to SPARC-like protein 1 prec... 66 6e-11
Alignment gi|XP_850045.1| PREDICTED: similar to SPARC-like protein 1 prec... 66 6e-11
Alignment gi|XP_860498.1| PREDICTED: similar to SPARC-like protein 1 prec... 66 6e-11
Alignment gi|XP_854982.1| PREDICTED: similar to SPARC precursor (Secreted... 57 5e-08
Alignment gi|XP_850499.1| PREDICTED: similar to Follistatin-related prote... 55 1e-07
>ref|XP_539793.2| PREDICTED: similar to Testican-3 precursor (SPARC/osteonectin, CWCV,
and Kazal-like domains proteoglycan 3) [Canis
familiaris].
Length = 443
Score = 324 bits (831), Expect = 9e-89
Identities = 150/188 (79%), Positives = 158/188 (84%)
Frame = +1
Query: 634 VKDAGAGHKQRRGSPPSTCRQCLGVSMSPVCGSDGHAYSSQCKLEYQACVLGKQISVRCE 813
+KDAG GHKQ RG STC+QC +PVCGSDGH YSSQCKLEYQACVLGKQ+SV CE
Sbjct: 128 MKDAGVGHKQWRGPVSSTCKQCPVAYTNPVCGSDGHTYSSQCKLEYQACVLGKQLSVNCE 187
Query: 814 GHCPCPSDTTRSSRGNVKRVCTSLEFREVSTRLRDWFKALHESGSQNKKAKGSLRPERSR 993
G CPCP D VKR C+ LEFREV+ RLRDWFKALHESGSQNKK K LRPERSR
Sbjct: 188 GRCPCPPDKPTGPSRRVKRACSDLEFREVANRLRDWFKALHESGSQNKKTKALLRPERSR 247
Query: 994 FDTSILPICKDSLGWMFNRLDTNYDLLLDQSELGSIYLDKNEQCTEAFFNSCDTYRDRSI 1173
FDTSILPICKDSLGWMFNRLDTNYDLLLDQSELGSIYLDKNEQCT+AFFNSCDTY+D I
Sbjct: 248 FDTSILPICKDSLGWMFNRLDTNYDLLLDQSELGSIYLDKNEQCTKAFFNSCDTYKDSLI 307
Query: 1174 SNNEWCYC 1197
SNNEWCYC
Sbjct: 308 SNNEWCYC 315
>ref|XP_850525.1| PREDICTED: similar to Testican-2 precursor (SPARC/osteonectin, CWCV,
and Kazal-like domains proteoglycan 2) isoform 2 [Canis
familiaris].
Length = 424
Score = 285 bits (730), Expect = 5e-77
Identities = 135/274 (49%), Positives = 179/274 (65%), Gaps = 1/274 (0%)
Frame = +1
Query: 379 GSFLDDKQWLSTVSQYDREAGQWNRFRDEVEDDYFRTWSPGRAFDQALDPAKDPCLNMKC 558
G+F++DKQWLS++SQY + RFRDEVEDDY ++W + D+ALD KDPC +KC
Sbjct: 36 GNFMEDKQWLSSISQYSGKIKHGTRFRDEVEDDYIKSWEDNQQGDEALDTTKDPCQKVKC 95
Query: 559 GRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGSPPSTCRQCLGVSMSPVCGSDG 738
RH+VCI QG A+CI +++L H +K + G+ + C+ C ++ VCGSDG
Sbjct: 96 SRHKVCIAQGYQRAMCISRKKLEHRIKQPTL---KLPGNKDTICKPCHMAPLASVCGSDG 152
Query: 739 HAYSSQCKLEYQACVLGKQISVRCEGHCPCPSDTTRSSRGNVK-RVCTSLEFREVSTRLR 915
H YSS CKLE QAC+ KQ++VRCEG CPCP++ S + K CT + ++ RLR
Sbjct: 153 HTYSSVCKLEQQACLSSKQLTVRCEGPCPCPTEQASLSTTDGKPETCTGQDLADLGDRLR 212
Query: 916 DWFKALHESGSQNKKAKGSLRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLDQSELG 1095
DWF+ LHE+ QN A GS S D S+ CKDS+GWMF++LDT+ DL LDQ+EL
Sbjct: 213 DWFQLLHENAKQNGSA-GSGANLASGLDKSLGASCKDSIGWMFSKLDTSADLFLDQTELA 271
Query: 1096 SIYLDKNEQCTEAFFNSCDTYRDRSISNNEWCYC 1197
+I LDK E C FFNSCDTY+D +S EWC+C
Sbjct: 272 AINLDKYEVCIRPFFNSCDTYKDGRVSTAEWCFC 305
>ref|XP_546155.2| PREDICTED: similar to Testican-2 precursor (SPARC/osteonectin, CWCV,
and Kazal-like domains proteoglycan 2) isoform 1 [Canis
familiaris].
Length = 421
Score = 275 bits (702), Expect = 8e-74
Identities = 132/274 (48%), Positives = 176/274 (64%), Gaps = 1/274 (0%)
Frame = +1
Query: 379 GSFLDDKQWLSTVSQYDREAGQWNRFRDEVEDDYFRTWSPGRAFDQALDPAKDPCLNMKC 558
G+F++DKQWLS++SQY + RFRD DDY ++W + D+ALD KDPC +KC
Sbjct: 36 GNFMEDKQWLSSISQYSGKIKHGTRFRD---DDYIKSWEDNQQGDEALDTTKDPCQKVKC 92
Query: 559 GRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGSPPSTCRQCLGVSMSPVCGSDG 738
RH+VCI QG A+CI +++L H +K + G+ + C+ C ++ VCGSDG
Sbjct: 93 SRHKVCIAQGYQRAMCISRKKLEHRIKQPTL---KLPGNKDTICKPCHMAPLASVCGSDG 149
Query: 739 HAYSSQCKLEYQACVLGKQISVRCEGHCPCPSDTTRSSRGNVK-RVCTSLEFREVSTRLR 915
H YSS CKLE QAC+ KQ++VRCEG CPCP++ S + K CT + ++ RLR
Sbjct: 150 HTYSSVCKLEQQACLSSKQLTVRCEGPCPCPTEQASLSTTDGKPETCTGQDLADLGDRLR 209
Query: 916 DWFKALHESGSQNKKAKGSLRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLDQSELG 1095
DWF+ LHE+ QN A GS S D S+ CKDS+GWMF++LDT+ DL LDQ+EL
Sbjct: 210 DWFQLLHENAKQNGSA-GSGANLASGLDKSLGASCKDSIGWMFSKLDTSADLFLDQTELA 268
Query: 1096 SIYLDKNEQCTEAFFNSCDTYRDRSISNNEWCYC 1197
+I LDK E C FFNSCDTY+D +S EWC+C
Sbjct: 269 AINLDKYEVCIRPFFNSCDTYKDGRVSTAEWCFC 302
>ref|XP_531914.2| PREDICTED: similar to Testican-1 precursor (SPOCK protein) [Canis
familiaris].
Length = 418
Score = 249 bits (637), Expect = 3e-66
Identities = 116/230 (50%), Positives = 150/230 (65%), Gaps = 3/230 (1%)
Frame = +1
Query: 517 ALDPAKDPCLNMKCGRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGSPPST--- 687
ALDP+KDPCL +KC H+VC+ Q TA+C+ ++ L K +K G PS
Sbjct: 57 ALDPSKDPCLKVKCSPHKVCVTQDYQTALCVSRKHLLPRQKKGNVAYKHWVG--PSNLVK 114
Query: 688 CRQCLGVSMSPVCGSDGHAYSSQCKLEYQACVLGKQISVRCEGHCPCPSDTTRSSRGNVK 867
C+ C + VCGSDGH Y+S+CKLE+ AC GK +++ C+G CPC + S K
Sbjct: 115 CKPCPAAQSAMVCGSDGHTYTSKCKLEFHACSTGKSLNILCDGPCPCLPEPEPSKHKTEK 174
Query: 868 RVCTSLEFREVSTRLRDWFKALHESGSQNKKAKGSLRPERSRFDTSILPICKDSLGWMFN 1047
CT E R +++RL+DWF ALHE ++ K S + RFDTSILPICKDSLGWMFN
Sbjct: 175 NACTDKELRNLASRLKDWFGALHEDANRVIKPTSS-DGAQGRFDTSILPICKDSLGWMFN 233
Query: 1048 RLDTNYDLLLDQSELGSIYLDKNEQCTEAFFNSCDTYRDRSISNNEWCYC 1197
+LD NYDLLLD SE+ +IYLDK E C + FNSCD+++D +SNNEWCYC
Sbjct: 234 KLDMNYDLLLDHSEINAIYLDKYEPCIKPLFNSCDSFKDGKLSNNEWCYC 283
>ref|XP_860591.1| PREDICTED: similar to SPARC-like protein 1 precursor (High
endothelial venule protein) (Hevin) (MAST 9) isoform 4
[Canis familiaris].
Length = 656
Score = 66.2 bits (160), Expect = 6e-11
Identities = 62/254 (24%), Positives = 93/254 (36%), Gaps = 33/254 (12%)
Frame = +1
Query: 535 DPCLNMKCGRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGSPPSTCRQCLGVSM 714
D C+N +C R +C G C+ Q + PP+ +
Sbjct: 423 DSCMNFQCKRGHICKADQQGKPHCVCQDSVT---------------CPPTKL-------L 460
Query: 715 SPVCGSDGHAYSSQCKLEYQACVL-----GKQISVRCEGHCPCPSDTTRSSRGNVKRVCT 879
VCG+D Y+S C L C L G Q+ + G C +CT
Sbjct: 461 DQVCGTDNQTYASSCHLFATKCKLEGTKKGHQLQLDYFGACKSIP------------ICT 508
Query: 880 SLEFREVSTRLRDWFKAL---------HESGSQNKKAKGSLRP---ERSRF---DTSILP 1014
E + R+RDW K + +G N+K + ++ + R D SI
Sbjct: 509 DFEVTQFPLRMRDWLKNILMQLYEQNPEHAGYLNEKQRNKVKKIYLDEKRLLAGDHSIDL 568
Query: 1015 ICKD----------SLGWMFNRLDTN-YDLLLDQSELGSIY--LDKNEQCTEAFFNSCDT 1155
+ +D + W F LD + D +L SEL + L E C FF CD
Sbjct: 569 LLRDFKKNYHMYVYPVHWQFGELDQHPMDRVLTHSELAPLRASLVPMEHCITRFFEECDP 628
Query: 1156 YRDRSISNNEWCYC 1197
+D+ I+ EW +C
Sbjct: 629 NKDKHITLEEWGHC 642
>ref|XP_535648.2| PREDICTED: similar to SPARC-like protein 1 precursor (High
endothelial venule protein) (Hevin) (MAST 9) isoform 1
[Canis familiaris].
Length = 667
Score = 66.2 bits (160), Expect = 6e-11
Identities = 62/254 (24%), Positives = 93/254 (36%), Gaps = 33/254 (12%)
Frame = +1
Query: 535 DPCLNMKCGRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGSPPSTCRQCLGVSM 714
D C+N +C R +C G C+ Q + PP+ +
Sbjct: 434 DSCMNFQCKRGHICKADQQGKPHCVCQDSVT---------------CPPTKL-------L 471
Query: 715 SPVCGSDGHAYSSQCKLEYQACVL-----GKQISVRCEGHCPCPSDTTRSSRGNVKRVCT 879
VCG+D Y+S C L C L G Q+ + G C +CT
Sbjct: 472 DQVCGTDNQTYASSCHLFATKCKLEGTKKGHQLQLDYFGACKSIP------------ICT 519
Query: 880 SLEFREVSTRLRDWFKAL---------HESGSQNKKAKGSLRP---ERSRF---DTSILP 1014
E + R+RDW K + +G N+K + ++ + R D SI
Sbjct: 520 DFEVTQFPLRMRDWLKNILMQLYEQNPEHAGYLNEKQRNKVKKIYLDEKRLLAGDHSIDL 579
Query: 1015 ICKD----------SLGWMFNRLDTN-YDLLLDQSELGSIY--LDKNEQCTEAFFNSCDT 1155
+ +D + W F LD + D +L SEL + L E C FF CD
Sbjct: 580 LLRDFKKNYHMYVYPVHWQFGELDQHPMDRVLTHSELAPLRASLVPMEHCITRFFEECDP 639
Query: 1156 YRDRSISNNEWCYC 1197
+D+ I+ EW +C
Sbjct: 640 NKDKHITLEEWGHC 653
>ref|XP_850045.1| PREDICTED: similar to SPARC-like protein 1 precursor (High
endothelial venule protein) (Hevin) (MAST 9) isoform 2
[Canis familiaris].
Length = 667
Score = 66.2 bits (160), Expect = 6e-11
Identities = 62/254 (24%), Positives = 93/254 (36%), Gaps = 33/254 (12%)
Frame = +1
Query: 535 DPCLNMKCGRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGSPPSTCRQCLGVSM 714
D C+N +C R +C G C+ Q + PP+ +
Sbjct: 434 DSCMNFQCKRGHICKADQQGKPHCVCQDSVT---------------CPPTKL-------L 471
Query: 715 SPVCGSDGHAYSSQCKLEYQACVL-----GKQISVRCEGHCPCPSDTTRSSRGNVKRVCT 879
VCG+D Y+S C L C L G Q+ + G C +CT
Sbjct: 472 DQVCGTDNQTYASSCHLFATKCKLEGTKKGHQLQLDYFGACKSIP------------ICT 519
Query: 880 SLEFREVSTRLRDWFKAL---------HESGSQNKKAKGSLRP---ERSRF---DTSILP 1014
E + R+RDW K + +G N+K + ++ + R D SI
Sbjct: 520 DFEVTQFPLRMRDWLKNILMQLYEQNPEHAGYLNEKQRNKVKKIYLDEKRLLAGDHSIDL 579
Query: 1015 ICKD----------SLGWMFNRLDTN-YDLLLDQSELGSIY--LDKNEQCTEAFFNSCDT 1155
+ +D + W F LD + D +L SEL + L E C FF CD
Sbjct: 580 LLRDFKKNYHMYVYPVHWQFGELDQHPMDRVLTHSELAPLRASLVPMEHCITRFFEECDP 639
Query: 1156 YRDRSISNNEWCYC 1197
+D+ I+ EW +C
Sbjct: 640 NKDKHITLEEWGHC 653
>ref|XP_860498.1| PREDICTED: similar to SPARC-like protein 1 precursor (High
endothelial venule protein) (Hevin) (MAST 9) isoform 3
[Canis familiaris].
Length = 609
Score = 66.2 bits (160), Expect = 6e-11
Identities = 62/254 (24%), Positives = 93/254 (36%), Gaps = 33/254 (12%)
Frame = +1
Query: 535 DPCLNMKCGRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGSPPSTCRQCLGVSM 714
D C+N +C R +C G C+ Q + PP+ +
Sbjct: 376 DSCMNFQCKRGHICKADQQGKPHCVCQDSVT---------------CPPTKL-------L 413
Query: 715 SPVCGSDGHAYSSQCKLEYQACVL-----GKQISVRCEGHCPCPSDTTRSSRGNVKRVCT 879
VCG+D Y+S C L C L G Q+ + G C +CT
Sbjct: 414 DQVCGTDNQTYASSCHLFATKCKLEGTKKGHQLQLDYFGACKSIP------------ICT 461
Query: 880 SLEFREVSTRLRDWFKAL---------HESGSQNKKAKGSLRP---ERSRF---DTSILP 1014
E + R+RDW K + +G N+K + ++ + R D SI
Sbjct: 462 DFEVTQFPLRMRDWLKNILMQLYEQNPEHAGYLNEKQRNKVKKIYLDEKRLLAGDHSIDL 521
Query: 1015 ICKD----------SLGWMFNRLDTN-YDLLLDQSELGSIY--LDKNEQCTEAFFNSCDT 1155
+ +D + W F LD + D +L SEL + L E C FF CD
Sbjct: 522 LLRDFKKNYHMYVYPVHWQFGELDQHPMDRVLTHSELAPLRASLVPMEHCITRFFEECDP 581
Query: 1156 YRDRSISNNEWCYC 1197
+D+ I+ EW +C
Sbjct: 582 NKDKHITLEEWGHC 595
>ref|XP_854982.1| PREDICTED: similar to SPARC precursor (Secreted protein acidic and
rich in cysteine) (Osteonectin) (ON) (Basement-membrane
protein 40) (BM-40) [Canis familiaris].
Length = 303
Score = 56.6 bits (135), Expect = 5e-08
Identities = 61/255 (23%), Positives = 92/255 (36%), Gaps = 32/255 (12%)
Frame = +1
Query: 529 AKDPCLNMKCGRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGSPPSTCRQCLGV 708
A++PC N C +VC + + T +C+ Q P++C +G
Sbjct: 68 AENPCQNHHCKHGKVCELDENNTPMCVCQ--------------------DPTSCPGPIG- 106
Query: 709 SMSPVCGSDGHAYSSQCKLEYQACVL-----GKQISVRCEGHCPCPSDTTRSSRGNVKRV 873
VC +D + S C C L G ++ + G C
Sbjct: 107 DFEKVCSNDNKTFDSSCHFFATKCTLEGTKKGHKLHLDYIGPCKYIPP------------ 154
Query: 874 CTSLEFREVSTRLRDWFK----ALHESGSQNK--KAKGSLRPER-----SRFDTSILPI- 1017
C E E R+RDW K L+E N K LR ++ R + P+
Sbjct: 155 CLDSELTEFPLRMRDWLKNVLVTLYERDEDNNLLTEKQKLRVKKIHENEKRLEAGDHPVE 214
Query: 1018 --CKD----------SLGWMFNRLDTN-YDLLLDQSELGSIY--LDKNEQCTEAFFNSCD 1152
+D + W F +LD + D L +EL + L E CT FF +CD
Sbjct: 215 LLARDFEKNYNMYIFPVHWQFGQLDQHPIDGYLSHTELAPLRAPLIPMEHCTTRFFETCD 274
Query: 1153 TYRDRSISNNEWCYC 1197
D+ I+ +EW C
Sbjct: 275 LDNDKYIALDEWAGC 289
>ref|XP_850499.1| PREDICTED: similar to Follistatin-related protein 1 precursor
(Follistatin-like 1) [Canis familiaris].
Length = 403
Score = 55.1 bits (131), Expect = 1e-07
Identities = 47/190 (24%), Positives = 72/190 (37%), Gaps = 2/190 (1%)
Frame = +1
Query: 367 RPAGGSFLDDKQWLSTVSQYDREAGQWNRFRDEVEDDYFRTWSPGRAFDQALDPAKDPCL 546
R GG+ + D + S + ++ W +D V+D + L C
Sbjct: 79 RGPGGAEVKDLEATSAMKSLRKQEEDWVTAKDLVKDG-----------QEELRSKSKICA 127
Query: 547 NMKCGRHEVCIV--QGSGTAVCIGQRRLAHSVKDAGAGHKQRRGSPPSTCRQCLGVSMSP 720
N+ CG C V +G T +CI Q + HK+ P
Sbjct: 128 NVFCGAGRECAVTEKGEPTCLCIEQCK----------PHKR------------------P 159
Query: 721 VCGSDGHAYSSQCKLEYQACVLGKQISVRCEGHCPCPSDTTRSSRGNVKRVCTSLEFREV 900
VCGS+G Y + C+L AC+ G +I V +GHC + S+ VC E+
Sbjct: 160 VCGSNGKTYLNHCELHRDACLTGSKIQVDYDGHCKEKKSVSPSAS---PVVCYQSNRDEL 216
Query: 901 STRLRDWFKA 930
R+ W +A
Sbjct: 217 RRRIIQWLEA 226
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 52,377,398
Number of extensions: 1593927
Number of successful extensions: 9989
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 9891
Number of HSP's successfully gapped: 20
Length of query: 399
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 294
Effective length of database: 15,374,224
Effective search space: 4520021856
Effective search space used: 4520021856
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002307
(1199 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_058646.2| testican-3 isoform 2 [Homo sapiens]. 482 e-136
Alignment gi|NP_001191288.1| testican-3 isoform 10 [Homo sapiens]. 482 e-136
Alignment gi|NP_001035249.1| testican-3 isoform 1 [Homo sapiens]. 471 e-133
Alignment gi|NP_001191287.1| testican-3 isoform 9 [Homo sapiens]. 471 e-133
Alignment gi|NP_001191281.1| testican-3 isoform 3 [Homo sapiens]. 418 e-117
Alignment gi|NP_001191285.1| testican-3 isoform 7 [Homo sapiens]. 384 e-106
Alignment gi|NP_001191283.1| testican-3 isoform 5 [Homo sapiens]. 365 e-101
Alignment gi|NP_001191284.1| testican-3 isoform 6 [Homo sapiens]. 326 3e-89
Alignment gi|NP_001191282.1| testican-3 isoform 4 [Homo sapiens]. 325 5e-89
Alignment gi|NP_004589.1| testican-1 precursor [Homo sapiens]. 307 1e-83
>ref|NP_058646.2| testican-3 isoform 2 [Homo sapiens].
Length = 436
Score = 482 bits (1240), Expect = e-136
Identities = 222/278 (79%), Positives = 239/278 (85%)
Frame = +1
Query: 364 GRPAGGSFLDDKQWLSTVSQYDREAGQWNRFRDEVEDDYFRTWSPGRAFDQALDPAKDPC 543
GR GG+FLDDKQWL+T+SQYD+E GQWN+FRDEVEDDYFRTWSPG+ FDQALDPAKDPC
Sbjct: 31 GRSDGGNFLDDKQWLTTISQYDKEVGQWNKFRDEVEDDYFRTWSPGKPFDQALDPAKDPC 90
Query: 544 LNMKCGRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGSPPSTCRQCLGVSMSPV 723
L MKC RH+VCI Q S TAVCI RRL H +K+AG H+Q RG STC+QC V SPV
Sbjct: 91 LKMKCSRHKVCIAQDSQTAVCISHRRLTHRMKEAGVDHRQWRGPILSTCKQCPVVYPSPV 150
Query: 724 CGSDGHAYSSQCKLEYQACVLGKQISVRCEGHCPCPSDTTRSSRGNVKRVCTSLEFREVS 903
CGSDGH YS QCKLEYQACVLGKQISV+CEGHCPCPSD S+ NVKR C+ LEFREV+
Sbjct: 151 CGSDGHTYSFQCKLEYQACVLGKQISVKCEGHCPCPSDKPTSTSRNVKRACSDLEFREVA 210
Query: 904 TRLRDWFKALHESGSQNKKAKGSLRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLDQ 1083
RLRDWFKALHESGSQNKK K LRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLDQ
Sbjct: 211 NRLRDWFKALHESGSQNKKTKTLLRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLDQ 270
Query: 1084 SELGSIYLDKNEQCTEAFFNSCDTYRDRSISNNEWCYC 1197
SEL SIYLDKNEQCT+AFFNSCDTY+D ISNNEWCYC
Sbjct: 271 SELRSIYLDKNEQCTKAFFNSCDTYKDSLISNNEWCYC 308
>ref|NP_001191288.1| testican-3 isoform 10 [Homo sapiens].
Length = 316
Score = 482 bits (1240), Expect = e-136
Identities = 222/278 (79%), Positives = 239/278 (85%)
Frame = +1
Query: 364 GRPAGGSFLDDKQWLSTVSQYDREAGQWNRFRDEVEDDYFRTWSPGRAFDQALDPAKDPC 543
GR GG+FLDDKQWL+T+SQYD+E GQWN+FRDEVEDDYFRTWSPG+ FDQALDPAKDPC
Sbjct: 31 GRSDGGNFLDDKQWLTTISQYDKEVGQWNKFRDEVEDDYFRTWSPGKPFDQALDPAKDPC 90
Query: 544 LNMKCGRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGSPPSTCRQCLGVSMSPV 723
L MKC RH+VCI Q S TAVCI RRL H +K+AG H+Q RG STC+QC V SPV
Sbjct: 91 LKMKCSRHKVCIAQDSQTAVCISHRRLTHRMKEAGVDHRQWRGPILSTCKQCPVVYPSPV 150
Query: 724 CGSDGHAYSSQCKLEYQACVLGKQISVRCEGHCPCPSDTTRSSRGNVKRVCTSLEFREVS 903
CGSDGH YS QCKLEYQACVLGKQISV+CEGHCPCPSD S+ NVKR C+ LEFREV+
Sbjct: 151 CGSDGHTYSFQCKLEYQACVLGKQISVKCEGHCPCPSDKPTSTSRNVKRACSDLEFREVA 210
Query: 904 TRLRDWFKALHESGSQNKKAKGSLRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLDQ 1083
RLRDWFKALHESGSQNKK K LRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLDQ
Sbjct: 211 NRLRDWFKALHESGSQNKKTKTLLRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLDQ 270
Query: 1084 SELGSIYLDKNEQCTEAFFNSCDTYRDRSISNNEWCYC 1197
SEL SIYLDKNEQCT+AFFNSCDTY+D ISNNEWCYC
Sbjct: 271 SELRSIYLDKNEQCTKAFFNSCDTYKDSLISNNEWCYC 308
>ref|NP_001035249.1| testican-3 isoform 1 [Homo sapiens].
Length = 433
Score = 471 bits (1212), Expect = e-133
Identities = 219/278 (78%), Positives = 236/278 (84%)
Frame = +1
Query: 364 GRPAGGSFLDDKQWLSTVSQYDREAGQWNRFRDEVEDDYFRTWSPGRAFDQALDPAKDPC 543
GR GG+FLDDKQWL+T+SQYD+E GQWN+FRD DDYFRTWSPG+ FDQALDPAKDPC
Sbjct: 31 GRSDGGNFLDDKQWLTTISQYDKEVGQWNKFRD---DDYFRTWSPGKPFDQALDPAKDPC 87
Query: 544 LNMKCGRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGSPPSTCRQCLGVSMSPV 723
L MKC RH+VCI Q S TAVCI RRL H +K+AG H+Q RG STC+QC V SPV
Sbjct: 88 LKMKCSRHKVCIAQDSQTAVCISHRRLTHRMKEAGVDHRQWRGPILSTCKQCPVVYPSPV 147
Query: 724 CGSDGHAYSSQCKLEYQACVLGKQISVRCEGHCPCPSDTTRSSRGNVKRVCTSLEFREVS 903
CGSDGH YS QCKLEYQACVLGKQISV+CEGHCPCPSD S+ NVKR C+ LEFREV+
Sbjct: 148 CGSDGHTYSFQCKLEYQACVLGKQISVKCEGHCPCPSDKPTSTSRNVKRACSDLEFREVA 207
Query: 904 TRLRDWFKALHESGSQNKKAKGSLRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLDQ 1083
RLRDWFKALHESGSQNKK K LRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLDQ
Sbjct: 208 NRLRDWFKALHESGSQNKKTKTLLRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLDQ 267
Query: 1084 SELGSIYLDKNEQCTEAFFNSCDTYRDRSISNNEWCYC 1197
SEL SIYLDKNEQCT+AFFNSCDTY+D ISNNEWCYC
Sbjct: 268 SELRSIYLDKNEQCTKAFFNSCDTYKDSLISNNEWCYC 305
>ref|NP_001191287.1| testican-3 isoform 9 [Homo sapiens].
Length = 313
Score = 471 bits (1212), Expect = e-133
Identities = 219/278 (78%), Positives = 236/278 (84%)
Frame = +1
Query: 364 GRPAGGSFLDDKQWLSTVSQYDREAGQWNRFRDEVEDDYFRTWSPGRAFDQALDPAKDPC 543
GR GG+FLDDKQWL+T+SQYD+E GQWN+FRD DDYFRTWSPG+ FDQALDPAKDPC
Sbjct: 31 GRSDGGNFLDDKQWLTTISQYDKEVGQWNKFRD---DDYFRTWSPGKPFDQALDPAKDPC 87
Query: 544 LNMKCGRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGSPPSTCRQCLGVSMSPV 723
L MKC RH+VCI Q S TAVCI RRL H +K+AG H+Q RG STC+QC V SPV
Sbjct: 88 LKMKCSRHKVCIAQDSQTAVCISHRRLTHRMKEAGVDHRQWRGPILSTCKQCPVVYPSPV 147
Query: 724 CGSDGHAYSSQCKLEYQACVLGKQISVRCEGHCPCPSDTTRSSRGNVKRVCTSLEFREVS 903
CGSDGH YS QCKLEYQACVLGKQISV+CEGHCPCPSD S+ NVKR C+ LEFREV+
Sbjct: 148 CGSDGHTYSFQCKLEYQACVLGKQISVKCEGHCPCPSDKPTSTSRNVKRACSDLEFREVA 207
Query: 904 TRLRDWFKALHESGSQNKKAKGSLRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLDQ 1083
RLRDWFKALHESGSQNKK K LRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLDQ
Sbjct: 208 NRLRDWFKALHESGSQNKKTKTLLRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLDQ 267
Query: 1084 SELGSIYLDKNEQCTEAFFNSCDTYRDRSISNNEWCYC 1197
SEL SIYLDKNEQCT+AFFNSCDTY+D ISNNEWCYC
Sbjct: 268 SELRSIYLDKNEQCTKAFFNSCDTYKDSLISNNEWCYC 305
>ref|NP_001191281.1| testican-3 isoform 3 [Homo sapiens].
Length = 385
Score = 418 bits (1075), Expect = e-117
Identities = 194/243 (79%), Positives = 207/243 (85%)
Frame = +1
Query: 469 EDDYFRTWSPGRAFDQALDPAKDPCLNMKCGRHEVCIVQGSGTAVCIGQRRLAHSVKDAG 648
+DDYFRTWSPG+ FDQALDPAKDPCL MKC RH+VCI Q S TAVCI RRL H +K+AG
Sbjct: 15 QDDYFRTWSPGKPFDQALDPAKDPCLKMKCSRHKVCIAQDSQTAVCISHRRLTHRMKEAG 74
Query: 649 AGHKQRRGSPPSTCRQCLGVSMSPVCGSDGHAYSSQCKLEYQACVLGKQISVRCEGHCPC 828
H+Q RG STC+QC V SPVCGSDGH YS QCKLEYQACVLGKQISV+CEGHCPC
Sbjct: 75 VDHRQWRGPILSTCKQCPVVYPSPVCGSDGHTYSFQCKLEYQACVLGKQISVKCEGHCPC 134
Query: 829 PSDTTRSSRGNVKRVCTSLEFREVSTRLRDWFKALHESGSQNKKAKGSLRPERSRFDTSI 1008
PSD S+ NVKR C+ LEFREV+ RLRDWFKALHESGSQNKK K LRPERSRFDTSI
Sbjct: 135 PSDKPTSTSRNVKRACSDLEFREVANRLRDWFKALHESGSQNKKTKTLLRPERSRFDTSI 194
Query: 1009 LPICKDSLGWMFNRLDTNYDLLLDQSELGSIYLDKNEQCTEAFFNSCDTYRDRSISNNEW 1188
LPICKDSLGWMFNRLDTNYDLLLDQSEL SIYLDKNEQCT+AFFNSCDTY+D ISNNEW
Sbjct: 195 LPICKDSLGWMFNRLDTNYDLLLDQSELRSIYLDKNEQCTKAFFNSCDTYKDSLISNNEW 254
Query: 1189 CYC 1197
CYC
Sbjct: 255 CYC 257
>ref|NP_001191285.1| testican-3 isoform 7 [Homo sapiens].
Length = 393
Score = 384 bits (985), Expect = e-106
Identities = 186/278 (66%), Positives = 201/278 (72%)
Frame = +1
Query: 364 GRPAGGSFLDDKQWLSTVSQYDREAGQWNRFRDEVEDDYFRTWSPGRAFDQALDPAKDPC 543
GR GG+FLDDKQWL+T+SQYD+E GQWN+FRD DDYFRTWSPG+ FDQALDPAKDPC
Sbjct: 31 GRSDGGNFLDDKQWLTTISQYDKEVGQWNKFRD---DDYFRTWSPGKPFDQALDPAKDPC 87
Query: 544 LNMKCGRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGSPPSTCRQCLGVSMSPV 723
L MKC RH+VCI Q S TAVCI RRL H +K+AG H+Q RG STC+QC V SPV
Sbjct: 88 LKMKCSRHKVCIAQDSQTAVCISHRRLTHRMKEAGVDHRQWRGPILSTCKQCPVVYPSPV 147
Query: 724 CGSDGHAYSSQCKLEYQACVLGKQISVRCEGHCPCPSDTTRSSRGNVKRVCTSLEFREVS 903
CGSDGH YS QCKLEYQACVLGKQISV+CEGHCPCPSD S+ NVKR
Sbjct: 148 CGSDGHTYSFQCKLEYQACVLGKQISVKCEGHCPCPSDKPTSTSRNVKR----------- 196
Query: 904 TRLRDWFKALHESGSQNKKAKGSLRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLDQ 1083
FDTSILPICKDSLGWMFNRLDTNYDLLLDQ
Sbjct: 197 -----------------------------GFDTSILPICKDSLGWMFNRLDTNYDLLLDQ 227
Query: 1084 SELGSIYLDKNEQCTEAFFNSCDTYRDRSISNNEWCYC 1197
SEL SIYLDKNEQCT+AFFNSCDTY+D ISNNEWCYC
Sbjct: 228 SELRSIYLDKNEQCTKAFFNSCDTYKDSLISNNEWCYC 265
>ref|NP_001191283.1| testican-3 isoform 5 [Homo sapiens].
Length = 344
Score = 365 bits (936), Expect = e-101
Identities = 171/216 (79%), Positives = 182/216 (84%)
Frame = +1
Query: 550 MKCGRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGSPPSTCRQCLGVSMSPVCG 729
MKC RH+VCI Q S TAVCI RRL H +K+AG H+Q RG STC+QC V SPVCG
Sbjct: 1 MKCSRHKVCIAQDSQTAVCISHRRLTHRMKEAGVDHRQWRGPILSTCKQCPVVYPSPVCG 60
Query: 730 SDGHAYSSQCKLEYQACVLGKQISVRCEGHCPCPSDTTRSSRGNVKRVCTSLEFREVSTR 909
SDGH YS QCKLEYQACVLGKQISV+CEGHCPCPSD S+ NVKR C+ LEFREV+ R
Sbjct: 61 SDGHTYSFQCKLEYQACVLGKQISVKCEGHCPCPSDKPTSTSRNVKRACSDLEFREVANR 120
Query: 910 LRDWFKALHESGSQNKKAKGSLRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLDQSE 1089
LRDWFKALHESGSQNKK K LRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLDQSE
Sbjct: 121 LRDWFKALHESGSQNKKTKTLLRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLDQSE 180
Query: 1090 LGSIYLDKNEQCTEAFFNSCDTYRDRSISNNEWCYC 1197
L SIYLDKNEQCT+AFFNSCDTY+D ISNNEWCYC
Sbjct: 181 LRSIYLDKNEQCTKAFFNSCDTYKDSLISNNEWCYC 216
>ref|NP_001191284.1| testican-3 isoform 6 [Homo sapiens].
Length = 340
Score = 326 bits (835), Expect = 3e-89
Identities = 152/191 (79%), Positives = 164/191 (85%)
Frame = +1
Query: 625 AHSVKDAGAGHKQRRGSPPSTCRQCLGVSMSPVCGSDGHAYSSQCKLEYQACVLGKQISV 804
+ ++K+AG H+Q RG STC+QC V SPVCGSDGH YS QCKLEYQACVLGKQISV
Sbjct: 22 SETMKEAGVDHRQWRGPILSTCKQCPVVYPSPVCGSDGHTYSFQCKLEYQACVLGKQISV 81
Query: 805 RCEGHCPCPSDTTRSSRGNVKRVCTSLEFREVSTRLRDWFKALHESGSQNKKAKGSLRPE 984
+CEGHCPCPSD S+ NVKR C+ LEFREV+ RLRDWFKALHESGSQNKK K LRPE
Sbjct: 82 KCEGHCPCPSDKPTSTSRNVKRACSDLEFREVANRLRDWFKALHESGSQNKKTKTLLRPE 141
Query: 985 RSRFDTSILPICKDSLGWMFNRLDTNYDLLLDQSELGSIYLDKNEQCTEAFFNSCDTYRD 1164
RSRFDTSILPICKDSLGWMFNRLDTNYDLLLDQSEL SIYLDKNEQCT+AFFNSCDTY+D
Sbjct: 142 RSRFDTSILPICKDSLGWMFNRLDTNYDLLLDQSELRSIYLDKNEQCTKAFFNSCDTYKD 201
Query: 1165 RSISNNEWCYC 1197
ISNNEWCYC
Sbjct: 202 SLISNNEWCYC 212
>ref|NP_001191282.1| testican-3 isoform 4 [Homo sapiens].
Length = 316
Score = 325 bits (833), Expect = 5e-89
Identities = 152/188 (80%), Positives = 162/188 (86%)
Frame = +1
Query: 634 VKDAGAGHKQRRGSPPSTCRQCLGVSMSPVCGSDGHAYSSQCKLEYQACVLGKQISVRCE 813
+K+AG H+Q RG STC+QC V SPVCGSDGH YS QCKLEYQACVLGKQISV+CE
Sbjct: 1 MKEAGVDHRQWRGPILSTCKQCPVVYPSPVCGSDGHTYSFQCKLEYQACVLGKQISVKCE 60
Query: 814 GHCPCPSDTTRSSRGNVKRVCTSLEFREVSTRLRDWFKALHESGSQNKKAKGSLRPERSR 993
GHCPCPSD S+ NVKR C+ LEFREV+ RLRDWFKALHESGSQNKK K LRPERSR
Sbjct: 61 GHCPCPSDKPTSTSRNVKRACSDLEFREVANRLRDWFKALHESGSQNKKTKTLLRPERSR 120
Query: 994 FDTSILPICKDSLGWMFNRLDTNYDLLLDQSELGSIYLDKNEQCTEAFFNSCDTYRDRSI 1173
FDTSILPICKDSLGWMFNRLDTNYDLLLDQSEL SIYLDKNEQCT+AFFNSCDTY+D I
Sbjct: 121 FDTSILPICKDSLGWMFNRLDTNYDLLLDQSELRSIYLDKNEQCTKAFFNSCDTYKDSLI 180
Query: 1174 SNNEWCYC 1197
SNNEWCYC
Sbjct: 181 SNNEWCYC 188
>ref|NP_004589.1| testican-1 precursor [Homo sapiens].
Length = 439
Score = 307 bits (787), Expect = 1e-83
Identities = 146/279 (52%), Positives = 185/279 (66%), Gaps = 3/279 (1%)
Frame = +1
Query: 370 PAGGSFLDDKQWLSTVSQYDREAGQWNRFRDEVEDDYFRTWSPGRAFDQALDPAKDPCLN 549
P G+FLD+ QWLSTVSQYDR+ WNRFRD DDYFR W+P + FDQALDP+KDPCL
Sbjct: 33 PNHGNFLDNDQWLSTVSQYDRDK-YWNRFRD---DDYFRNWNPNKPFDQALDPSKDPCLK 88
Query: 550 MKCGRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGSPPST---CRQCLGVSMSP 720
+KC H+VC+ Q TA+C+ ++ L K K G PS C+ C +
Sbjct: 89 VKCSPHKVCVTQDYQTALCVSRKHLLPRQKKGNVAQKHWVG--PSNLVKCKPCPVAQSAM 146
Query: 721 VCGSDGHAYSSQCKLEYQACVLGKQISVRCEGHCPCPSDTTRSSRGNVKRVCTSLEFREV 900
VCGSDGH+Y+S+CKLE+ AC GK ++ C+G CPC + + CT E R +
Sbjct: 147 VCGSDGHSYTSKCKLEFHACSTGKSLATLCDGPCPCLPEPEPPKHKAERSACTDKELRNL 206
Query: 901 STRLRDWFKALHESGSQNKKAKGSLRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLD 1080
++RL+DWF ALHE ++ K S + RFDTSILPICKDSLGWMFN+LD NYDLLLD
Sbjct: 207 ASRLKDWFGALHEDANRVIKPTSS-NTAQGRFDTSILPICKDSLGWMFNKLDMNYDLLLD 265
Query: 1081 QSELGSIYLDKNEQCTEAFFNSCDTYRDRSISNNEWCYC 1197
SE+ +IYLDK E C + FNSCD+++D +SNNEWCYC
Sbjct: 266 PSEINAIYLDKYEPCIKPLFNSCDSFKDGKLSNNEWCYC 304
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 51,201,713
Number of extensions: 1548139
Number of successful extensions: 8958
Number of sequences better than 1.0e-05: 19
Number of HSP's gapped: 8862
Number of HSP's successfully gapped: 20
Length of query: 399
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 294
Effective length of database: 14,835,944
Effective search space: 4361767536
Effective search space used: 4361767536
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002307
(1199 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_076178.1| testican-3 precursor [Mus musculus]. 478 e-135
Alignment gi|NP_001159936.1| testican-1 isoform 4 precursor [Mus musculus]. 320 2e-87
Alignment gi|NP_033288.2| testican-1 isoform 1 precursor [Mus musculus]. 320 2e-87
Alignment gi|NP_001159938.1| testican-1 isoform 2 precursor [Mus musculus]. 315 6e-86
Alignment gi|NP_001159937.1| testican-1 isoform 5 precursor [Mus musculus]. 309 3e-84
Alignment gi|NP_001159935.1| testican-1 isoform 3 precursor [Mus musculus]. 309 3e-84
Alignment gi|NP_443720.1| testican-2 precursor [Mus musculus]. 295 6e-80
Alignment gi|NP_034227.3| SPARC-like protein 1 precursor [Mus musculus]. 61 2e-09
Alignment gi|NP_033268.1| SPARC precursor [Mus musculus]. 57 2e-08
Alignment gi|NP_032073.2| follistatin-related protein 1 precursor [Mus mu... 53 5e-07
>ref|NP_076178.1| testican-3 precursor [Mus musculus].
Length = 436
Score = 478 bits (1230), Expect = e-135
Identities = 216/278 (77%), Positives = 239/278 (85%)
Frame = +1
Query: 364 GRPAGGSFLDDKQWLSTVSQYDREAGQWNRFRDEVEDDYFRTWSPGRAFDQALDPAKDPC 543
GR GG+FLD+KQWL+T+SQYD+E GQWN+FRDEVEDDYFRTW+PG+ FDQALDPAKDPC
Sbjct: 31 GRSDGGNFLDEKQWLTTISQYDKEVGQWNKFRDEVEDDYFRTWNPGKPFDQALDPAKDPC 90
Query: 544 LNMKCGRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGSPPSTCRQCLGVSMSPV 723
L KC RH+VCI Q + TA+CI RRL HS+K+ G HKQ RG P STC+ C SPV
Sbjct: 91 LKTKCSRHKVCITQDAQTALCISHRRLTHSMKEVGGSHKQWRGLPSSTCKPCPIAYASPV 150
Query: 724 CGSDGHAYSSQCKLEYQACVLGKQISVRCEGHCPCPSDTTRSSRGNVKRVCTSLEFREVS 903
CGSDGH+YSSQCKLEYQACVLGKQIS++CEG CPCPSD + + NVKR C+ LEFREV+
Sbjct: 151 CGSDGHSYSSQCKLEYQACVLGKQISIKCEGRCPCPSDKSMNIGRNVKRACSDLEFREVA 210
Query: 904 TRLRDWFKALHESGSQNKKAKGSLRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLDQ 1083
RLRDWFKALHESGSQNKK K LRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLDQ
Sbjct: 211 NRLRDWFKALHESGSQNKKTKALLRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLDQ 270
Query: 1084 SELGSIYLDKNEQCTEAFFNSCDTYRDRSISNNEWCYC 1197
SELGSIYLDKNEQCT+AFFNSCDTY+D ISNNEWCYC
Sbjct: 271 SELGSIYLDKNEQCTKAFFNSCDTYKDSLISNNEWCYC 308
>ref|NP_001159936.1| testican-1 isoform 4 precursor [Mus musculus].
Length = 367
Score = 320 bits (819), Expect = 2e-87
Identities = 150/275 (54%), Positives = 187/275 (68%), Gaps = 3/275 (1%)
Frame = +1
Query: 382 SFLDDKQWLSTVSQYDREAGQWNRFRDEVEDDYFRTWSPGRAFDQALDPAKDPCLNMKCG 561
+FLD+ QWLSTVSQYDR+ WNRFRDEVEDDYFR W+P + FDQALDP+KDPCL +KC
Sbjct: 37 NFLDNDQWLSTVSQYDRDK-YWNRFRDEVEDDYFRNWNPNKPFDQALDPSKDPCLKVKCS 95
Query: 562 RHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGSPPST---CRQCLGVSMSPVCGS 732
H+VC+ Q TA+C+ ++ L K HK G PS C+ C + VCGS
Sbjct: 96 PHKVCVTQDYQTALCVSRKHLLPRQKKGNVAHKHWLG--PSNLVKCKPCPVAQSAMVCGS 153
Query: 733 DGHAYSSQCKLEYQACVLGKQISVRCEGHCPCPSDTTRSSRGNVKRVCTSLEFREVSTRL 912
DGH Y+S+CKLE+ AC GK ++ C+G CPC + K CT E R +++RL
Sbjct: 154 DGHTYTSKCKLEFHACSTGKSLNSLCDGPCPCLPEPEPLKPKAEKSACTDKELRNLASRL 213
Query: 913 RDWFKALHESGSQNKKAKGSLRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLDQSEL 1092
+DWF ALHE ++ K S P + RFDTSILPICKDSLGWMFN+LD NYDLLLD SE+
Sbjct: 214 KDWFGALHEDANRVIKPTSS-DPAQGRFDTSILPICKDSLGWMFNKLDMNYDLLLDHSEI 272
Query: 1093 GSIYLDKNEQCTEAFFNSCDTYRDRSISNNEWCYC 1197
+IYLDK E C + FNSCD+++D +SNNEWCYC
Sbjct: 273 NAIYLDKYEPCIKPLFNSCDSFKDGKLSNNEWCYC 307
>ref|NP_033288.2| testican-1 isoform 1 precursor [Mus musculus].
Length = 442
Score = 320 bits (819), Expect = 2e-87
Identities = 150/275 (54%), Positives = 187/275 (68%), Gaps = 3/275 (1%)
Frame = +1
Query: 382 SFLDDKQWLSTVSQYDREAGQWNRFRDEVEDDYFRTWSPGRAFDQALDPAKDPCLNMKCG 561
+FLD+ QWLSTVSQYDR+ WNRFRDEVEDDYFR W+P + FDQALDP+KDPCL +KC
Sbjct: 37 NFLDNDQWLSTVSQYDRDK-YWNRFRDEVEDDYFRNWNPNKPFDQALDPSKDPCLKVKCS 95
Query: 562 RHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGSPPST---CRQCLGVSMSPVCGS 732
H+VC+ Q TA+C+ ++ L K HK G PS C+ C + VCGS
Sbjct: 96 PHKVCVTQDYQTALCVSRKHLLPRQKKGNVAHKHWLG--PSNLVKCKPCPVAQSAMVCGS 153
Query: 733 DGHAYSSQCKLEYQACVLGKQISVRCEGHCPCPSDTTRSSRGNVKRVCTSLEFREVSTRL 912
DGH Y+S+CKLE+ AC GK ++ C+G CPC + K CT E R +++RL
Sbjct: 154 DGHTYTSKCKLEFHACSTGKSLNSLCDGPCPCLPEPEPLKPKAEKSACTDKELRNLASRL 213
Query: 913 RDWFKALHESGSQNKKAKGSLRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLDQSEL 1092
+DWF ALHE ++ K S P + RFDTSILPICKDSLGWMFN+LD NYDLLLD SE+
Sbjct: 214 KDWFGALHEDANRVIKPTSS-DPAQGRFDTSILPICKDSLGWMFNKLDMNYDLLLDHSEI 272
Query: 1093 GSIYLDKNEQCTEAFFNSCDTYRDRSISNNEWCYC 1197
+IYLDK E C + FNSCD+++D +SNNEWCYC
Sbjct: 273 NAIYLDKYEPCIKPLFNSCDSFKDGKLSNNEWCYC 307
>ref|NP_001159938.1| testican-1 isoform 2 precursor [Mus musculus].
Length = 441
Score = 315 bits (806), Expect = 6e-86
Identities = 148/275 (53%), Positives = 184/275 (66%), Gaps = 3/275 (1%)
Frame = +1
Query: 382 SFLDDKQWLSTVSQYDREAGQWNRFRDEVEDDYFRTWSPGRAFDQALDPAKDPCLNMKCG 561
+FLD+ QWLSTVSQYDR+ WNRFRDEVEDDYFR W+P + FDQALDP+KDPCL +KC
Sbjct: 37 NFLDNDQWLSTVSQYDRDK-YWNRFRDEVEDDYFRNWNPNKPFDQALDPSKDPCLKVKCS 95
Query: 562 RHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGSPPST---CRQCLGVSMSPVCGS 732
H+VC+ Q TA+C+ ++ L K HK G PS C+ C + VCGS
Sbjct: 96 PHKVCVTQDYQTALCVSRKHLLPRQKKGNVAHKHWLG--PSNLVKCKPCPVAQSAMVCGS 153
Query: 733 DGHAYSSQCKLEYQACVLGKQISVRCEGHCPCPSDTTRSSRGNVKRVCTSLEFREVSTRL 912
DGH Y+S+CKLE+ AC GK ++ C+G CPC + K CT E R +++RL
Sbjct: 154 DGHTYTSKCKLEFHACSTGKSLNSLCDGPCPCLPEPEPLKPKAEKSACTDKELRNLASRL 213
Query: 913 RDWFKALHESGSQNKKAKGSLRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLDQSEL 1092
+DWF ALHE N+ K + FDTSILPICKDSLGWMFN+LD NYDLLLD SE+
Sbjct: 214 KDWFGALHEDA--NRVIKPTSSDPAQGFDTSILPICKDSLGWMFNKLDMNYDLLLDHSEI 271
Query: 1093 GSIYLDKNEQCTEAFFNSCDTYRDRSISNNEWCYC 1197
+IYLDK E C + FNSCD+++D +SNNEWCYC
Sbjct: 272 NAIYLDKYEPCIKPLFNSCDSFKDGKLSNNEWCYC 306
>ref|NP_001159937.1| testican-1 isoform 5 precursor [Mus musculus].
Length = 364
Score = 309 bits (791), Expect = 3e-84
Identities = 147/275 (53%), Positives = 184/275 (66%), Gaps = 3/275 (1%)
Frame = +1
Query: 382 SFLDDKQWLSTVSQYDREAGQWNRFRDEVEDDYFRTWSPGRAFDQALDPAKDPCLNMKCG 561
+FLD+ QWLSTVSQYDR+ WNRFRD DDYFR W+P + FDQALDP+KDPCL +KC
Sbjct: 37 NFLDNDQWLSTVSQYDRDK-YWNRFRD---DDYFRNWNPNKPFDQALDPSKDPCLKVKCS 92
Query: 562 RHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGSPPST---CRQCLGVSMSPVCGS 732
H+VC+ Q TA+C+ ++ L K HK G PS C+ C + VCGS
Sbjct: 93 PHKVCVTQDYQTALCVSRKHLLPRQKKGNVAHKHWLG--PSNLVKCKPCPVAQSAMVCGS 150
Query: 733 DGHAYSSQCKLEYQACVLGKQISVRCEGHCPCPSDTTRSSRGNVKRVCTSLEFREVSTRL 912
DGH Y+S+CKLE+ AC GK ++ C+G CPC + K CT E R +++RL
Sbjct: 151 DGHTYTSKCKLEFHACSTGKSLNSLCDGPCPCLPEPEPLKPKAEKSACTDKELRNLASRL 210
Query: 913 RDWFKALHESGSQNKKAKGSLRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLDQSEL 1092
+DWF ALHE ++ K S P + RFDTSILPICKDSLGWMFN+LD NYDLLLD SE+
Sbjct: 211 KDWFGALHEDANRVIKPTSS-DPAQGRFDTSILPICKDSLGWMFNKLDMNYDLLLDHSEI 269
Query: 1093 GSIYLDKNEQCTEAFFNSCDTYRDRSISNNEWCYC 1197
+IYLDK E C + FNSCD+++D +SNNEWCYC
Sbjct: 270 NAIYLDKYEPCIKPLFNSCDSFKDGKLSNNEWCYC 304
>ref|NP_001159935.1| testican-1 isoform 3 precursor [Mus musculus].
Length = 439
Score = 309 bits (791), Expect = 3e-84
Identities = 147/275 (53%), Positives = 184/275 (66%), Gaps = 3/275 (1%)
Frame = +1
Query: 382 SFLDDKQWLSTVSQYDREAGQWNRFRDEVEDDYFRTWSPGRAFDQALDPAKDPCLNMKCG 561
+FLD+ QWLSTVSQYDR+ WNRFRD DDYFR W+P + FDQALDP+KDPCL +KC
Sbjct: 37 NFLDNDQWLSTVSQYDRDK-YWNRFRD---DDYFRNWNPNKPFDQALDPSKDPCLKVKCS 92
Query: 562 RHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGSPPST---CRQCLGVSMSPVCGS 732
H+VC+ Q TA+C+ ++ L K HK G PS C+ C + VCGS
Sbjct: 93 PHKVCVTQDYQTALCVSRKHLLPRQKKGNVAHKHWLG--PSNLVKCKPCPVAQSAMVCGS 150
Query: 733 DGHAYSSQCKLEYQACVLGKQISVRCEGHCPCPSDTTRSSRGNVKRVCTSLEFREVSTRL 912
DGH Y+S+CKLE+ AC GK ++ C+G CPC + K CT E R +++RL
Sbjct: 151 DGHTYTSKCKLEFHACSTGKSLNSLCDGPCPCLPEPEPLKPKAEKSACTDKELRNLASRL 210
Query: 913 RDWFKALHESGSQNKKAKGSLRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLDQSEL 1092
+DWF ALHE ++ K S P + RFDTSILPICKDSLGWMFN+LD NYDLLLD SE+
Sbjct: 211 KDWFGALHEDANRVIKPTSS-DPAQGRFDTSILPICKDSLGWMFNKLDMNYDLLLDHSEI 269
Query: 1093 GSIYLDKNEQCTEAFFNSCDTYRDRSISNNEWCYC 1197
+IYLDK E C + FNSCD+++D +SNNEWCYC
Sbjct: 270 NAIYLDKYEPCIKPLFNSCDSFKDGKLSNNEWCYC 304
>ref|NP_443720.1| testican-2 precursor [Mus musculus].
Length = 423
Score = 295 bits (754), Expect = 6e-80
Identities = 133/274 (48%), Positives = 181/274 (66%), Gaps = 1/274 (0%)
Frame = +1
Query: 379 GSFLDDKQWLSTVSQYDREAGQWNRFRDEVEDDYFRTWSPGRAFDQALDPAKDPCLNMKC 558
G+F++D+QWLS++SQY + WNRFRDEVEDDY ++W + D+ALD KDPC +KC
Sbjct: 36 GNFMEDEQWLSSISQYSGKIKHWNRFRDEVEDDYIKSWEDNQQGDEALDTTKDPCQKVKC 95
Query: 559 GRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGSPPSTCRQCLGVSMSPVCGSDG 738
RH+VC+ QG A+CI +++L H +K + G S C+ C ++ VCGSDG
Sbjct: 96 SRHKVCVAQGYQRAMCISRKKLEHRIKQPSL---KLHGGKDSVCKPCHMAQLASVCGSDG 152
Query: 739 HAYSSQCKLEYQACVLGKQISVRCEGHCPCPSD-TTRSSRGNVKRVCTSLEFREVSTRLR 915
H YSS CKLE QAC+ KQ++VRCEG CPCP++ +T S+ + CT + ++ RLR
Sbjct: 153 HTYSSVCKLEQQACLSSKQLAVRCEGPCPCPTEQSTASTTDSKSETCTGQDLADLGDRLR 212
Query: 916 DWFKALHESGSQNKKAKGSLRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLDQSELG 1095
DWF+ L E+ QN A + P + D S+ CKDS+GWMF++LDT+ DL LDQ+EL
Sbjct: 213 DWFQLLRENSKQNGSANSATNP--AGLDKSLGASCKDSIGWMFSKLDTSGDLFLDQTELA 270
Query: 1096 SIYLDKNEQCTEAFFNSCDTYRDRSISNNEWCYC 1197
+I LDK E C FFNSCDTY+D +S EWC+C
Sbjct: 271 AINLDKYEVCIRPFFNSCDTYKDGRVSTAEWCFC 304
>ref|NP_034227.3| SPARC-like protein 1 precursor [Mus musculus].
Length = 650
Score = 61.2 bits (147), Expect = 2e-09
Identities = 61/252 (24%), Positives = 87/252 (34%), Gaps = 33/252 (13%)
Frame = +1
Query: 541 CLNMKCGRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGSPPSTCRQCLGVSMSP 720
C N +C R +C G C+ Q P TC +
Sbjct: 419 CTNFQCKRGHICKTDPQGKPHCVCQ--------------------DPETCPPAK--ILDQ 456
Query: 721 VCGSDGHAYSSQCKLEYQACVL-----GKQISVRCEGHCPCPSDTTRSSRGNVKRVCTSL 885
CG+D Y+S C L C L G Q+ + G C CT
Sbjct: 457 ACGTDNQTYASSCHLFATKCRLEGTKKGHQLQLDYFGACKSIP------------ACTDF 504
Query: 886 EFREVSTRLRDWFKAL---------HESGSQNKKAKGSLRP---ERSRF---DTSILPIC 1020
E + R+RDW K + G N+K + ++ + R D I +
Sbjct: 505 EVAQFPLRMRDWLKNILMQLYEPNPKHGGYLNEKQRSKVKKIYLDEKRLLAGDHPIELLL 564
Query: 1021 KD----------SLGWMFNRLDTN-YDLLLDQSELGSIY--LDKNEQCTEAFFNSCDTYR 1161
+D + W FN LD + D +L SEL + L E C FF CD +
Sbjct: 565 RDFKKNYHMYVYPVHWQFNELDQHPADRILTHSELAPLRASLVPMEHCITRFFEECDPNK 624
Query: 1162 DRSISNNEWCYC 1197
D+ I+ EW +C
Sbjct: 625 DKHITLKEWGHC 636
>ref|NP_033268.1| SPARC precursor [Mus musculus].
Length = 302
Score = 57.4 bits (137), Expect = 2e-08
Identities = 60/255 (23%), Positives = 91/255 (35%), Gaps = 32/255 (12%)
Frame = +1
Query: 529 AKDPCLNMKCGRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGSPPSTCRQCLGV 708
A +PC N C +VC + S T +C+ Q P++C +G
Sbjct: 67 ADNPCQNHHCKHGKVCELDESNTPMCVCQ--------------------DPTSCPAPIG- 105
Query: 709 SMSPVCGSDGHAYSSQCKLEYQACVL-----GKQISVRCEGHCPCPSDTTRSSRGNVKRV 873
VC +D + S C C L G ++ + G C +
Sbjct: 106 EFEKVCSNDNKTFDSSCHFFATKCTLEGTKKGHKLHLDYIGPCKYIAP------------ 153
Query: 874 CTSLEFREVSTRLRDWFKAL------HESGSQNKKAKGSLRPER-----SRFDTSILPI- 1017
C E E R+RDW K + + G+ K LR ++ R + P+
Sbjct: 154 CLDSELTEFPLRMRDWLKNVLVTLYERDEGNNLLTEKQKLRVKKIHENEKRLEAGDHPVE 213
Query: 1018 --CKD----------SLGWMFNRLDTN-YDLLLDQSELGSIY--LDKNEQCTEAFFNSCD 1152
+D + W F +LD + D L +EL + L E CT FF +CD
Sbjct: 214 LLARDFEKNYNMYIFPVHWQFGQLDQHPIDGYLSHTELAPLRAPLIPMEHCTTRFFETCD 273
Query: 1153 TYRDRSISNNEWCYC 1197
D+ I+ EW C
Sbjct: 274 LDNDKYIALEEWAGC 288
>ref|NP_032073.2| follistatin-related protein 1 precursor [Mus musculus].
Length = 306
Score = 52.8 bits (125), Expect = 5e-07
Identities = 31/98 (31%), Positives = 44/98 (44%), Gaps = 3/98 (3%)
Frame = +1
Query: 646 GAGHK---QRRGSPPSTCRQCLGVSMSPVCGSDGHAYSSQCKLEYQACVLGKQISVRCEG 816
GAG + +G P C + PVCGS+G Y + C+L AC+ G +I V +G
Sbjct: 35 GAGRECAVTEKGEPTCLCIEQCKPHKRPVCGSNGKTYLNHCELHRDACLTGSKIQVDYDG 94
Query: 817 HCPCPSDTTRSSRGNVKRVCTSLEFREVSTRLRDWFKA 930
HC + +S VC E+ RL W +A
Sbjct: 95 HC---KEKKSASPSASPVVCYQANRDELRRRLIQWLEA 129
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 43,050,291
Number of extensions: 1278585
Number of successful extensions: 6953
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 6835
Number of HSP's successfully gapped: 11
Length of query: 399
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 295
Effective length of database: 12,493,815
Effective search space: 3685675425
Effective search space used: 3685675425
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002307
(1199 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001927803.1| PREDICTED: testican-3 isoform 3 [Sus scrofa]. 595 e-170
Alignment gi|XP_001927799.1| PREDICTED: testican-3 isoform 2 [Sus scrofa]. 584 e-167
Alignment gi|XP_001927792.1| PREDICTED: testican-3 isoform 1 [Sus scrofa]. 584 e-167
Alignment gi|XP_001925956.2| PREDICTED: testican-2 [Sus scrofa]. 246 1e-65
Alignment gi|XP_003360811.1| PREDICTED: testican-2-like, partial [Sus scr... 244 5e-65
Alignment gi|XP_003354339.1| PREDICTED: testican-1-like [Sus scrofa]. 175 4e-44
Alignment gi|XP_003354335.1| PREDICTED: testican-1-like [Sus scrofa]. 147 9e-36
Alignment gi|NP_001090891.1| SPARC-like protein 1 [Sus scrofa]. 61 1e-09
Alignment gi|XP_003357144.1| PREDICTED: SPARC-like protein 1-like [Sus sc... 60 3e-09
Alignment gi|NP_001026964.1| SPARC precursor [Sus scrofa]. 55 6e-08
>ref|XP_001927803.1| PREDICTED: testican-3 isoform 3 [Sus scrofa].
Length = 427
Score = 595 bits (1533), Expect = e-170
Identities = 278/279 (99%), Positives = 278/279 (99%)
Frame = +1
Query: 361 TGRPAGGSFLDDKQWLSTVSQYDREAGQWNRFRDEVEDDYFRTWSPGRAFDQALDPAKDP 540
TGRPAGGSFLDDKQWLSTVSQYDREAGQWNRFRDEVEDDYFRTWSPGRAFDQALDPAKDP
Sbjct: 24 TGRPAGGSFLDDKQWLSTVSQYDREAGQWNRFRDEVEDDYFRTWSPGRAFDQALDPAKDP 83
Query: 541 CLNMKCGRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGSPPSTCRQCLGVSMSP 720
CLNMKCGRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRG PPSTCRQCLGVSMSP
Sbjct: 84 CLNMKCGRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGPPPSTCRQCLGVSMSP 143
Query: 721 VCGSDGHAYSSQCKLEYQACVLGKQISVRCEGHCPCPSDTTRSSRGNVKRVCTSLEFREV 900
VCGSDGHAYSSQCKLEYQACVLGKQISVRCEGHCPCPSDTTRSSRGNVKRVCTSLEFREV
Sbjct: 144 VCGSDGHAYSSQCKLEYQACVLGKQISVRCEGHCPCPSDTTRSSRGNVKRVCTSLEFREV 203
Query: 901 STRLRDWFKALHESGSQNKKAKGSLRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLD 1080
STRLRDWFKALHESGSQNKKAKGSLRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLD
Sbjct: 204 STRLRDWFKALHESGSQNKKAKGSLRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLD 263
Query: 1081 QSELGSIYLDKNEQCTEAFFNSCDTYRDRSISNNEWCYC 1197
QSELGSIYLDKNEQCTEAFFNSCDTYRDRSISNNEWCYC
Sbjct: 264 QSELGSIYLDKNEQCTEAFFNSCDTYRDRSISNNEWCYC 302
>ref|XP_001927799.1| PREDICTED: testican-3 isoform 2 [Sus scrofa].
Length = 424
Score = 584 bits (1505), Expect = e-167
Identities = 275/279 (98%), Positives = 275/279 (98%)
Frame = +1
Query: 361 TGRPAGGSFLDDKQWLSTVSQYDREAGQWNRFRDEVEDDYFRTWSPGRAFDQALDPAKDP 540
TGRPAGGSFLDDKQWLSTVSQYDREAGQWNRFRD DDYFRTWSPGRAFDQALDPAKDP
Sbjct: 24 TGRPAGGSFLDDKQWLSTVSQYDREAGQWNRFRD---DDYFRTWSPGRAFDQALDPAKDP 80
Query: 541 CLNMKCGRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGSPPSTCRQCLGVSMSP 720
CLNMKCGRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRG PPSTCRQCLGVSMSP
Sbjct: 81 CLNMKCGRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGPPPSTCRQCLGVSMSP 140
Query: 721 VCGSDGHAYSSQCKLEYQACVLGKQISVRCEGHCPCPSDTTRSSRGNVKRVCTSLEFREV 900
VCGSDGHAYSSQCKLEYQACVLGKQISVRCEGHCPCPSDTTRSSRGNVKRVCTSLEFREV
Sbjct: 141 VCGSDGHAYSSQCKLEYQACVLGKQISVRCEGHCPCPSDTTRSSRGNVKRVCTSLEFREV 200
Query: 901 STRLRDWFKALHESGSQNKKAKGSLRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLD 1080
STRLRDWFKALHESGSQNKKAKGSLRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLD
Sbjct: 201 STRLRDWFKALHESGSQNKKAKGSLRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLD 260
Query: 1081 QSELGSIYLDKNEQCTEAFFNSCDTYRDRSISNNEWCYC 1197
QSELGSIYLDKNEQCTEAFFNSCDTYRDRSISNNEWCYC
Sbjct: 261 QSELGSIYLDKNEQCTEAFFNSCDTYRDRSISNNEWCYC 299
>ref|XP_001927792.1| PREDICTED: testican-3 isoform 1 [Sus scrofa].
Length = 424
Score = 584 bits (1505), Expect = e-167
Identities = 275/279 (98%), Positives = 275/279 (98%)
Frame = +1
Query: 361 TGRPAGGSFLDDKQWLSTVSQYDREAGQWNRFRDEVEDDYFRTWSPGRAFDQALDPAKDP 540
TGRPAGGSFLDDKQWLSTVSQYDREAGQWNRFRD DDYFRTWSPGRAFDQALDPAKDP
Sbjct: 24 TGRPAGGSFLDDKQWLSTVSQYDREAGQWNRFRD---DDYFRTWSPGRAFDQALDPAKDP 80
Query: 541 CLNMKCGRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGSPPSTCRQCLGVSMSP 720
CLNMKCGRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRG PPSTCRQCLGVSMSP
Sbjct: 81 CLNMKCGRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGPPPSTCRQCLGVSMSP 140
Query: 721 VCGSDGHAYSSQCKLEYQACVLGKQISVRCEGHCPCPSDTTRSSRGNVKRVCTSLEFREV 900
VCGSDGHAYSSQCKLEYQACVLGKQISVRCEGHCPCPSDTTRSSRGNVKRVCTSLEFREV
Sbjct: 141 VCGSDGHAYSSQCKLEYQACVLGKQISVRCEGHCPCPSDTTRSSRGNVKRVCTSLEFREV 200
Query: 901 STRLRDWFKALHESGSQNKKAKGSLRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLD 1080
STRLRDWFKALHESGSQNKKAKGSLRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLD
Sbjct: 201 STRLRDWFKALHESGSQNKKAKGSLRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLD 260
Query: 1081 QSELGSIYLDKNEQCTEAFFNSCDTYRDRSISNNEWCYC 1197
QSELGSIYLDKNEQCTEAFFNSCDTYRDRSISNNEWCYC
Sbjct: 261 QSELGSIYLDKNEQCTEAFFNSCDTYRDRSISNNEWCYC 299
>ref|XP_001925956.2| PREDICTED: testican-2 [Sus scrofa].
Length = 413
Score = 246 bits (629), Expect = 1e-65
Identities = 114/243 (46%), Positives = 152/243 (62%), Gaps = 1/243 (0%)
Frame = +1
Query: 472 DDYFRTWSPGRAFDQALDPAKDPCLNMKCGRHEVCIVQGSGTAVCIGQRRLAHSVKDAGA 651
DDY ++W + D+ALD KDPC +KC RH+VCI QG A+CI +++L H +K
Sbjct: 56 DDYIKSWEDNQQGDEALDTTKDPCQKVKCSRHKVCIAQGYQRAMCISRKKLEHRIKQPAL 115
Query: 652 GHKQRRGSPPSTCRQCLGVSMSPVCGSDGHAYSSQCKLEYQACVLGKQISVRCEGHCPCP 831
+ G+ + C+ C ++ VCGSDGH YSS CKLE QAC+ KQ++VRCEG CPCP
Sbjct: 116 ---KLHGNKDTACKPCHMAQLASVCGSDGHTYSSVCKLEQQACLSSKQLTVRCEGPCPCP 172
Query: 832 SDTTRSSRGNVK-RVCTSLEFREVSTRLRDWFKALHESGSQNKKAKGSLRPERSRFDTSI 1008
++ +S + K CT + ++ RLRDWF+ LHE+ QN S D S+
Sbjct: 173 TEQAATSTADGKPETCTGQDLADLGDRLRDWFQLLHENSKQNGSVSSGANLA-SGLDKSL 231
Query: 1009 LPICKDSLGWMFNRLDTNYDLLLDQSELGSIYLDKNEQCTEAFFNSCDTYRDRSISNNEW 1188
CKDS+GWMF++LDT+ DL LDQ EL +I LDK E C FFNSCDTY+D +S EW
Sbjct: 232 GASCKDSIGWMFSKLDTSADLFLDQMELAAINLDKYEVCIRPFFNSCDTYKDGRVSTAEW 291
Query: 1189 CYC 1197
C+C
Sbjct: 292 CFC 294
>ref|XP_003360811.1| PREDICTED: testican-2-like, partial [Sus scrofa].
Length = 351
Score = 244 bits (624), Expect = 5e-65
Identities = 115/246 (46%), Positives = 151/246 (61%), Gaps = 1/246 (0%)
Frame = +1
Query: 463 EVEDDYFRTWSPGRAFDQALDPAKDPCLNMKCGRHEVCIVQGSGTAVCIGQRRLAHSVKD 642
EVEDDY ++W + D+ALD KDPC +KC RH+VCI QG A+CI +++L H +K
Sbjct: 1 EVEDDYIKSWEDNQQGDEALDTTKDPCQKVKCSRHKVCIAQGYQRAMCISRKKLEHRIKQ 60
Query: 643 AGAGHKQRRGSPPSTCRQCLGVSMSPVCGSDGHAYSSQCKLEYQACVLGKQISVRCEGHC 822
+ G+ + C+ C ++ VCGSDGH YSS CKLE QAC+ KQ++VRCEG C
Sbjct: 61 PAL---KLHGNKDTACKPCHMAQLASVCGSDGHTYSSVCKLEQQACLSSKQLTVRCEGPC 117
Query: 823 PCPSDTTRSSRGNVK-RVCTSLEFREVSTRLRDWFKALHESGSQNKKAKGSLRPERSRFD 999
PCP++ +S + K CT + ++ RLRDWF+ LHE+ QN S D
Sbjct: 118 PCPTEQAATSTADGKPETCTGQDLADLGDRLRDWFQLLHENSKQNGSVSSGANLA-SGLD 176
Query: 1000 TSILPICKDSLGWMFNRLDTNYDLLLDQSELGSIYLDKNEQCTEAFFNSCDTYRDRSISN 1179
S+ CKDS+GWMF++LDT+ DL LDQ EL +I LDK E C FFNSCDTY
Sbjct: 177 KSLGASCKDSIGWMFSKLDTSADLFLDQMELAAINLDKYEVCIRPFFNSCDTYXXXXXXX 236
Query: 1180 NEWCYC 1197
EWC+C
Sbjct: 237 AEWCFC 242
>ref|XP_003354339.1| PREDICTED: testican-1-like [Sus scrofa].
Length = 271
Score = 175 bits (444), Expect = 4e-44
Identities = 80/154 (51%), Positives = 102/154 (66%), Gaps = 1/154 (0%)
Frame = +1
Query: 370 PAGGSFLDDKQWLSTVSQYDREAGQWNRFRDEVEDDYFRTWSPGRAFDQALDPAKDPCLN 549
P G+FLD+ QWLSTVSQYDR+ WNRFRD DDYFR W+P + FDQALDP+KDPCL
Sbjct: 33 PNNGNFLDNDQWLSTVSQYDRDK-YWNRFRD---DDYFRNWNPNKPFDQALDPSKDPCLK 88
Query: 550 MKCGRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRG-SPPSTCRQCLGVSMSPVC 726
+KC H+VC+ Q TA+C+ ++ L K HK G S C+ C + + VC
Sbjct: 89 VKCSPHKVCVTQDYQTALCVSRKHLLPRQKKGNVAHKHWVGPSNLVKCKPCPAIQSAMVC 148
Query: 727 GSDGHAYSSQCKLEYQACVLGKQISVRCEGHCPC 828
GSDGH Y+S+CKLE+ AC GK ++ C+G CPC
Sbjct: 149 GSDGHTYTSKCKLEFHACSTGKSLTTLCDGPCPC 182
>ref|XP_003354335.1| PREDICTED: testican-1-like [Sus scrofa].
Length = 258
Score = 147 bits (372), Expect = 9e-36
Identities = 68/119 (57%), Positives = 87/119 (73%), Gaps = 1/119 (0%)
Frame = +1
Query: 844 RSSRGNV-KRVCTSLEFREVSTRLRDWFKALHESGSQNKKAKGSLRPERSRFDTSILPIC 1020
+ +RG + + CT E R +++RL+DWF ALHE ++ K S + RFDTSILPIC
Sbjct: 6 KGTRGGLWEAACTDKELRNLASRLKDWFGALHEDANRVIKPTSS-DAAQGRFDTSILPIC 64
Query: 1021 KDSLGWMFNRLDTNYDLLLDQSELGSIYLDKNEQCTEAFFNSCDTYRDRSISNNEWCYC 1197
KDSLGWMFN+LD NYDLLLD SE+ +IYLDK E C + FNSCD+++D +SNNEWCYC
Sbjct: 65 KDSLGWMFNKLDMNYDLLLDHSEINAIYLDKYEPCIKPLFNSCDSFKDGKLSNNEWCYC 123
>ref|NP_001090891.1| SPARC-like protein 1 [Sus scrofa].
Length = 662
Score = 61.2 bits (147), Expect = 1e-09
Identities = 62/254 (24%), Positives = 91/254 (35%), Gaps = 33/254 (12%)
Frame = +1
Query: 535 DPCLNMKCGRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGSPPSTCRQCLGVSM 714
D C++ +C R +C G C+ Q P TC +
Sbjct: 429 DSCMSFQCKRGHICKADQQGKPHCVCQ--------------------DPVTCPPTK--LL 466
Query: 715 SPVCGSDGHAYSSQCKLEYQACVL-----GKQISVRCEGHCPCPSDTTRSSRGNVKRVCT 879
VCG+D Y+S C L C L G Q+ + G C CT
Sbjct: 467 DQVCGTDNQTYASSCHLFATKCRLEGTKKGHQLQLDYFGACKSIP------------ACT 514
Query: 880 SLEFREVSTRLRDWFKAL---------HESGSQNKKAKGSLRP---ERSRF---DTSILP 1014
E + R+RDW K + +G N+K + ++ + R D SI
Sbjct: 515 DFEVTQFPLRMRDWLKNILMQLYEPNPEHAGYLNEKQRNKVKKIYLDEKRLLAGDHSIDL 574
Query: 1015 ICKD----------SLGWMFNRLDTN-YDLLLDQSELGSIY--LDKNEQCTEAFFNSCDT 1155
+ +D + W F+ LD + D +L SEL + L E C FF CD
Sbjct: 575 LLRDFKKNYHMYVYPVHWQFSELDQHPRDRVLTHSELAPLRASLVPMEHCITRFFGECDP 634
Query: 1156 YRDRSISNNEWCYC 1197
+D+ I+ EW C
Sbjct: 635 NKDKHITLKEWGRC 648
>ref|XP_003357144.1| PREDICTED: SPARC-like protein 1-like [Sus scrofa].
Length = 705
Score = 59.7 bits (143), Expect = 3e-09
Identities = 61/252 (24%), Positives = 92/252 (36%), Gaps = 31/252 (12%)
Frame = +1
Query: 535 DPCLNMKCGRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGSPPSTCRQCLGVSM 714
D C++ +C R +C G C+ Q P TC +
Sbjct: 472 DSCMSFQCKRGHICKADQQGKPHCVCQ--------------------DPVTCPPTK--LL 509
Query: 715 SPVCGSDGHAYSSQCKLEYQACVLG---KQISVRCEGHCPCPSDTTRSSRGNVKRVCTSL 885
VCG+D Y+S C L C L K+ ++ + C S CT
Sbjct: 510 DQVCGTDNQTYASSCHLFATKCRLEGTKKEHQLQLDYFGACKSIPA----------CTDF 559
Query: 886 EFREVSTRLRDWFKAL---------HESGSQNKKAKGSLRP---ERSRF---DTSILPIC 1020
E + R+RDW K + +G N+K + ++ + R D SI +
Sbjct: 560 EVTQFPLRMRDWLKNILMQLYEPNPEHAGYLNEKQRNKVKKIYLDEKRLLAGDHSIDLLL 619
Query: 1021 KD----------SLGWMFNRLDTN-YDLLLDQSELGSIY--LDKNEQCTEAFFNSCDTYR 1161
+D + W F+ LD + D +L SEL + L E C FF CD +
Sbjct: 620 RDFKKNYHMYVYPVHWQFSELDQHPRDRVLTHSELAPLRASLVPMEHCITRFFGECDPNK 679
Query: 1162 DRSISNNEWCYC 1197
D+ I+ EW C
Sbjct: 680 DKHITLKEWGRC 691
>ref|NP_001026964.1| SPARC precursor [Sus scrofa].
Length = 300
Score = 55.5 bits (132), Expect = 6e-08
Identities = 60/255 (23%), Positives = 92/255 (36%), Gaps = 32/255 (12%)
Frame = +1
Query: 529 AKDPCLNMKCGRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGSPPSTCRQCLGV 708
A++PC N C +VC + + + +C+ Q P++C +G
Sbjct: 65 AENPCQNHHCKHGKVCELDENNSPMCVCQ--------------------DPTSCPAPIG- 103
Query: 709 SMSPVCGSDGHAYSSQCKLEYQACVL-----GKQISVRCEGHCPCPSDTTRSSRGNVKRV 873
VC +D + S C C L G ++ + G C
Sbjct: 104 EFEKVCSNDNKTFDSSCHFFATKCTLEGTKKGHKLHLDYIGPCKYIPP------------ 151
Query: 874 CTSLEFREVSTRLRDWFK----ALHESGSQNK--KAKGSLRPER-----SRFDTSILPI- 1017
C E E R+RDW K L+E N K LR ++ R + P+
Sbjct: 152 CLDSELTEFPLRMRDWLKNVLVTLYERDENNNLLTEKQKLRVKKIHENEKRLEAGDHPVE 211
Query: 1018 --CKD----------SLGWMFNRLDTN-YDLLLDQSELGSIY--LDKNEQCTEAFFNSCD 1152
+D + W F +LD + D L +EL + L E CT FF +CD
Sbjct: 212 LLARDFEKNYNMYIFPVHWQFGQLDQHPIDGYLSHTELAPLRAPLIPMEHCTTRFFQTCD 271
Query: 1153 TYRDRSISNNEWCYC 1197
D+ I+ +EW C
Sbjct: 272 LDNDKYIALDEWAGC 286
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 32,532,784
Number of extensions: 1008398
Number of successful extensions: 6463
Number of sequences better than 1.0e-05: 16
Number of HSP's gapped: 6393
Number of HSP's successfully gapped: 17
Length of query: 399
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 298
Effective length of database: 8,829,335
Effective search space: 2631141830
Effective search space used: 2631141830
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002307
(1199 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr14 412 e-112
>Sscrofa_Chr14
|| Length = 153851969
Score = 412 bits (208), Expect = e-112
Identities = 208/208 (100%)
Strand = Plus / Plus
Query: 992 gatttgataccagtattttgccaatctgcaaggattcacttggctggatgtttaacagac 1051
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23492515 gatttgataccagtattttgccaatctgcaaggattcacttggctggatgtttaacagac 23492574
Query: 1052 tggacacaaactacgacctgctcctggaccagtcggagctggggagcatttacctggaca 1111
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23492575 tggacacaaactacgacctgctcctggaccagtcggagctggggagcatttacctggaca 23492634
Query: 1112 agaatgagcagtgcacggaggccttcttcaactcctgtgacacatacagggaccgctcca 1171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23492635 agaatgagcagtgcacggaggccttcttcaactcctgtgacacatacagggaccgctcca 23492694
Query: 1172 tctccaacaacgagtggtgctactgctt 1199
||||||||||||||||||||||||||||
Sbjct: 23492695 tctccaacaacgagtggtgctactgctt 23492722
Score = 345 bits (174), Expect = 3e-92
Identities = 174/174 (100%)
Strand = Plus / Plus
Query: 290 agatgctccgggcgccggccgtgctgtgcgtgtgcgcggccgcctggtgcgcgcaggctc 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23086207 agatgctccgggcgccggccgtgctgtgcgtgtgcgcggccgcctggtgcgcgcaggctc 23086266
Query: 350 tggcggtggccacgggccggccggccggcggcagttttctggacgacaaacaatggctca 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23086267 tggcggtggccacgggccggccggccggcggcagttttctggacgacaaacaatggctca 23086326
Query: 410 gcacggtgtcccagtacgaccgggaggccgggcagtggaaccgattccgagacg 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23086327 gcacggtgtcccagtacgaccgggaggccgggcagtggaaccgattccgagacg 23086380
Score = 317 bits (160), Expect = 8e-84
Identities = 160/160 (100%)
Strand = Plus / Plus
Query: 1 gaagagccccgactgtgacgcaccaagttgtcctcagatcccgtccctcctccgccggga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23085589 gaagagccccgactgtgacgcaccaagttgtcctcagatcccgtccctcctccgccggga 23085648
Query: 61 gcagctcggagtcgcagggcagcggcgggcagagagagcgccccggtgccgcgtgcgccc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23085649 gcagctcggagtcgcagggcagcggcgggcagagagagcgccccggtgccgcgtgcgccc 23085708
Query: 121 cggtgcagaagcgccccgagcctccggccctcggaagcga 160
||||||||||||||||||||||||||||||||||||||||
Sbjct: 23085709 cggtgcagaagcgccccgagcctccggccctcggaagcga 23085748
Score = 246 bits (124), Expect = 2e-62
Identities = 127/128 (99%)
Strand = Plus / Plus
Query: 629 acagtgtgaaagatgcaggagccgggcataagcagcggaggggttccccgccatccacct 688
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 23322392 acagtgtgaaagatgcaggagccgggcataagcagcggaggggtcccccgccatccacct 23322451
Query: 689 gcaggcagtgcttgggggtctccatgagccctgtctgtggctcagatggacatgcctact 748
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23322452 gcaggcagtgcttgggggtctccatgagccctgtctgtggctcagatggacatgcctact 23322511
Query: 749 cttcccag 756
||||||||
Sbjct: 23322512 cttcccag 23322519
Score = 244 bits (123), Expect = 9e-62
Identities = 123/123 (100%)
Strand = Plus / Plus
Query: 870 agtgtgcaccagcctggagttcagggaggtgtcgaccaggctgcgggactggttcaaggc 929
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23476186 agtgtgcaccagcctggagttcagggaggtgtcgaccaggctgcgggactggttcaaggc 23476245
Query: 930 ccttcacgagagcgggagccagaacaagaaggccaaaggctccctgcggccggagagaag 989
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23476246 ccttcacgagagcgggagccagaacaagaaggccaaaggctccctgcggccggagagaag 23476305
Query: 990 cag 992
|||
Sbjct: 23476306 cag 23476308
Score = 234 bits (118), Expect = 9e-59
Identities = 118/118 (100%)
Strand = Plus / Plus
Query: 754 cagtgcaaactagaataccaggcgtgtgtcttaggaaagcagatctcagtgagatgtgaa 813
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23328355 cagtgcaaactagaataccaggcgtgtgtcttaggaaagcagatctcagtgagatgtgaa 23328414
Query: 814 gggcattgcccatgtccttcagatacgaccaggagctcaagaggaaatgtgaaaagag 871
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23328415 gggcattgcccatgtccttcagatacgaccaggagctcaagaggaaatgtgaaaagag 23328472
Score = 230 bits (116), Expect = 1e-57
Identities = 116/116 (100%)
Strand = Plus / Plus
Query: 517 gctttagatccagctaaagacccgtgcttgaatatgaaatgtggccgccacgaagtgtgc 576
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23259854 gctttagatccagctaaagacccgtgcttgaatatgaaatgtggccgccacgaagtgtgc 23259913
Query: 577 attgtgcaaggttctgggaccgcggtctgcattggccagcggagacttgcccacag 632
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23259914 attgtgcaaggttctgggaccgcggtctgcattggccagcggagacttgcccacag 23259969
Score = 119 bits (60), Expect = 4e-24
Identities = 60/60 (100%)
Strand = Plus / Plus
Query: 232 agtcctccgctccagccaagtcgcatccggagctcctgcagctcggatccggggaggaag 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23085820 agtcctccgctccagccaagtcgcatccggagctcctgcagctcggatccggggaggaag 23085879
Score = 95.6 bits (48), Expect = 5e-17
Identities = 48/48 (100%)
Strand = Plus / Plus
Query: 470 aggatgattatttccgcacttggagtccaggaagagccttcgatcagg 517
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23216096 aggatgattatttccgcacttggagtccaggaagagccttcgatcagg 23216143
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 26,643,589
Number of extensions: 135
Number of successful extensions: 135
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 135
Number of HSP's successfully gapped: 9
Length of query: 1199
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1178
Effective length of database: 2,808,413,156
Effective search space: 3308310697768
Effective search space used: 3308310697768
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)