Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002350
(1394 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001014413.1| claudin-4 [Bos taurus]. 301 9e-82
Alignment gi|NP_991370.1| claudin-3 [Bos taurus]. 220 3e-57
Alignment gi|NP_001192626.1| claudin 6 [Bos taurus]. 214 2e-55
Alignment gi|XP_002697982.1| PREDICTED: claudin 6-like [Bos taurus]. 214 2e-55
Alignment gi|XP_002697981.1| PREDICTED: claudin 9-like [Bos taurus]. 213 3e-55
Alignment gi|XP_874805.1| PREDICTED: claudin 9 [Bos taurus]. 213 3e-55
Alignment gi|NP_001069928.1| claudin-5 [Bos taurus]. 174 1e-43
Alignment gi|NP_001035609.1| claudin-7 [Bos taurus]. 153 3e-37
Alignment gi|NP_001091565.1| claudin-8 [Bos taurus]. 149 8e-36
Alignment gi|NP_001001854.1| claudin-1 [Bos taurus]. 148 1e-35
>ref|NP_001014413.1| claudin-4 [Bos taurus].
Length = 209
Score = 301 bits (771), Expect = 9e-82
Identities = 153/209 (73%), Positives = 156/209 (74%)
Frame = +3
Query: 225 MASMGLQVMGIALAVLGWLGAILSCALPMWRVTAFIGSNIVTSQTIWEGLWMNCVVQSTG 404
MASMGLQVMGIALAVLGWLGAILSCALPMWRVTAFIGSNIVTSQTIWEGLWMNCVVQSTG
Sbjct: 1 MASMGLQVMGIALAVLGWLGAILSCALPMWRVTAFIGSNIVTSQTIWEGLWMNCVVQSTG 60
Query: 405 QMQCKVYDSLLALPQDLQXXXXXXXXXXXXXXXXXXXXXXXXKCTNCVDDESAKAKTMIX 584
QMQCKVYDSLLALPQDLQ KCTNCVDDES+KAK MI
Sbjct: 61 QMQCKVYDSLLALPQDLQAARALIVICIILAVFGVLLSVVGGKCTNCVDDESSKAKIMIV 120
Query: 585 XXXXXXXXXXXXMVPVSWTAHNVIRDFYNPLVASGQKREMGASLYIGWXXXXXXXXXXXX 764
MVPVSWTA+NVIRDFYNPLVASGQKREMGASLY+GW
Sbjct: 121 AGVVFLLAGLLVMVPVSWTANNVIRDFYNPLVASGQKREMGASLYVGWAAAGLLILGGAL 180
Query: 765 XCCNCPPRTDKPYSAKYSAARSAPASNYV 851
C NCPPR DKPYSAKYSAARSAPASNYV
Sbjct: 181 LCFNCPPRNDKPYSAKYSAARSAPASNYV 209
>ref|NP_991370.1| claudin-3 [Bos taurus].
Length = 219
Score = 220 bits (560), Expect = 3e-57
Identities = 110/201 (54%), Positives = 129/201 (64%), Gaps = 1/201 (0%)
Frame = +3
Query: 231 SMGLQVMGIALAVLGWLGAILSCALPMWRVTAFIGSNIVTSQTIWEGLWMNCVVQSTGQM 410
SMGL++ G +LAVLGWL I+ CALPMWRVTAFIGS+I+T+Q WEGLWMNCVVQSTGQM
Sbjct: 2 SMGLEIAGTSLAVLGWLCTIVCCALPMWRVTAFIGSSIITAQITWEGLWMNCVVQSTGQM 61
Query: 411 QCKVYDSLLALPQDLQXXXXXXXXXXXXXXXXXXXXXXXXKCTNCVDDESAKAKTMIXXX 590
QCKVYDSLLALPQDLQ +CTNCV D++AKAK I
Sbjct: 62 QCKVYDSLLALPQDLQAARALIVIAILLAVFGLLVALVGAQCTNCVQDDTAKAKITIVAG 121
Query: 591 XXXXXXXXXXMVPVSWTAHNVIRDFYNPLVASGQKREMGASLYIGWXXXXXXXXXXXXXC 770
+VPVSW+A+ +IRDFYNPLV QKREMGA+LY+GW C
Sbjct: 122 VLFLLAALLTLVPVSWSANTIIRDFYNPLVPEAQKREMGAALYVGWAASALQLLGGALLC 181
Query: 771 CNCPPRTDKPYS-AKYSAARS 830
C+CPPR + + YSA RS
Sbjct: 182 CSCPPRDNYARTKIVYSAPRS 202
>ref|NP_001192626.1| claudin 6 [Bos taurus].
Length = 221
Score = 214 bits (544), Expect = 2e-55
Identities = 101/209 (48%), Positives = 129/209 (61%), Gaps = 3/209 (1%)
Frame = +3
Query: 225 MASMGLQVMGIALAVLGWLGAILSCALPMWRVTAFIGSNIVTSQTIWEGLWMNCVVQSTG 404
MAS GLQ++GI L + GW+ A++SC LP+W+VTAFIG++IV +Q +WEGLWM+CVVQSTG
Sbjct: 1 MASAGLQILGIVLTLFGWVNALVSCTLPLWKVTAFIGNSIVVAQVVWEGLWMSCVVQSTG 60
Query: 405 QMQCKVYDSLLALPQDLQXXXXXXXXXXXXXXXXXXXXXXXXKCTNCVDDESAKAKTMIX 584
QMQCKVYDSLLALPQDLQ KCT CV+D+ +KA+ ++
Sbjct: 61 QMQCKVYDSLLALPQDLQAARALCVITLLVALLGLLVYLAGAKCTTCVEDKDSKARLVLT 120
Query: 585 XXXXXXXXXXXXMVPVSWTAHNVIRDFYNPLVASGQKREMGASLYIGWXXXXXXXXXXXX 764
++PV WTAH +I+DFYNPLV QKRE+GASLY+GW
Sbjct: 121 SGIIFVISGVLTLIPVCWTAHTIIQDFYNPLVVEAQKRELGASLYLGWAASGLLLLGGGL 180
Query: 765 XCCNCP---PRTDKPYSAKYSAARSAPAS 842
CC CP R+ Y A+YS + AS
Sbjct: 181 LCCTCPSGGSRSSSHYMARYSVSAPHTAS 209
>ref|XP_002697982.1| PREDICTED: claudin 6-like [Bos taurus].
Length = 221
Score = 214 bits (544), Expect = 2e-55
Identities = 101/209 (48%), Positives = 129/209 (61%), Gaps = 3/209 (1%)
Frame = +3
Query: 225 MASMGLQVMGIALAVLGWLGAILSCALPMWRVTAFIGSNIVTSQTIWEGLWMNCVVQSTG 404
MAS GLQ++GI L + GW+ A++SC LP+W+VTAFIG++IV +Q +WEGLWM+CVVQSTG
Sbjct: 1 MASAGLQILGIVLTLFGWVNALVSCTLPLWKVTAFIGNSIVVAQVVWEGLWMSCVVQSTG 60
Query: 405 QMQCKVYDSLLALPQDLQXXXXXXXXXXXXXXXXXXXXXXXXKCTNCVDDESAKAKTMIX 584
QMQCKVYDSLLALPQDLQ KCT CV+D+ +KA+ ++
Sbjct: 61 QMQCKVYDSLLALPQDLQAARALCVITLLVALLGLLVYLAGAKCTTCVEDKDSKARLVLT 120
Query: 585 XXXXXXXXXXXXMVPVSWTAHNVIRDFYNPLVASGQKREMGASLYIGWXXXXXXXXXXXX 764
++PV WTAH +I+DFYNPLV QKRE+GASLY+GW
Sbjct: 121 SGIIFVISGVLTLIPVCWTAHTIIQDFYNPLVVEAQKRELGASLYLGWAASGLLLLGGGL 180
Query: 765 XCCNCP---PRTDKPYSAKYSAARSAPAS 842
CC CP R+ Y A+YS + AS
Sbjct: 181 LCCTCPSGGSRSSSHYMARYSVSAPHTAS 209
>ref|XP_002697981.1| PREDICTED: claudin 9-like [Bos taurus].
Length = 217
Score = 213 bits (543), Expect = 3e-55
Identities = 98/187 (52%), Positives = 123/187 (65%)
Frame = +3
Query: 225 MASMGLQVMGIALAVLGWLGAILSCALPMWRVTAFIGSNIVTSQTIWEGLWMNCVVQSTG 404
MAS GL+++G+ LAVLGWLG ++SCALP+W+VTAFIG++IV +Q +WEGLWM+CVVQSTG
Sbjct: 1 MASTGLELLGMTLAVLGWLGTLVSCALPLWKVTAFIGNSIVVAQVVWEGLWMSCVVQSTG 60
Query: 405 QMQCKVYDSLLALPQDLQXXXXXXXXXXXXXXXXXXXXXXXXKCTNCVDDESAKAKTMIX 584
QMQCKVYDSLLALPQDLQ +CT CV+DE AKA+ ++
Sbjct: 61 QMQCKVYDSLLALPQDLQAARALCVIALLLALLGVLVAITGAQCTTCVEDEGAKARIVLT 120
Query: 585 XXXXXXXXXXXXMVPVSWTAHNVIRDFYNPLVASGQKREMGASLYIGWXXXXXXXXXXXX 764
++PV WTAH +I+DFYNP+VA KRE+GASLY+GW
Sbjct: 121 AGVLLLLAGILVLIPVCWTAHAIIQDFYNPMVAEALKRELGASLYLGWAASALLLLGGGL 180
Query: 765 XCCNCPP 785
CC CPP
Sbjct: 181 LCCTCPP 187
>ref|XP_874805.1| PREDICTED: claudin 9 [Bos taurus].
Length = 217
Score = 213 bits (543), Expect = 3e-55
Identities = 98/187 (52%), Positives = 123/187 (65%)
Frame = +3
Query: 225 MASMGLQVMGIALAVLGWLGAILSCALPMWRVTAFIGSNIVTSQTIWEGLWMNCVVQSTG 404
MAS GL+++G+ LAVLGWLG ++SCALP+W+VTAFIG++IV +Q +WEGLWM+CVVQSTG
Sbjct: 1 MASTGLELLGMTLAVLGWLGTLVSCALPLWKVTAFIGNSIVVAQVVWEGLWMSCVVQSTG 60
Query: 405 QMQCKVYDSLLALPQDLQXXXXXXXXXXXXXXXXXXXXXXXXKCTNCVDDESAKAKTMIX 584
QMQCKVYDSLLALPQDLQ +CT CV+DE AKA+ ++
Sbjct: 61 QMQCKVYDSLLALPQDLQAARALCVIALLLALLGVLVAITGAQCTTCVEDEGAKARIVLT 120
Query: 585 XXXXXXXXXXXXMVPVSWTAHNVIRDFYNPLVASGQKREMGASLYIGWXXXXXXXXXXXX 764
++PV WTAH +I+DFYNP+VA KRE+GASLY+GW
Sbjct: 121 AGVLLLLAGILVLIPVCWTAHAIIQDFYNPMVAEALKRELGASLYLGWAASALLLLGGGL 180
Query: 765 XCCNCPP 785
CC CPP
Sbjct: 181 LCCTCPP 187
>ref|NP_001069928.1| claudin-5 [Bos taurus].
Length = 218
Score = 174 bits (442), Expect = 1e-43
Identities = 87/209 (41%), Positives = 117/209 (55%), Gaps = 3/209 (1%)
Frame = +3
Query: 225 MASMGLQVMGIALAVLGWLGAILSCALPMWRVTAFIGSNIVTSQTIWEGLWMNCVVQSTG 404
M S L+++G+ L ++GW+G IL+C LPMW+VTAF+ NIVT+QT W+GLWM+CVVQSTG
Sbjct: 1 MGSAALEILGLVLCLVGWVGLILACGLPMWQVTAFLDHNIVTAQTTWKGLWMSCVVQSTG 60
Query: 405 QMQCKVYDSLLALPQDLQXXXXXXXXXXXXXXXXXXXXXXXXKCTNCVDDESAKAKTMIX 584
MQCKVYDS+LAL ++Q +CT CV AKA+ +
Sbjct: 61 HMQCKVYDSVLALSPEVQAARALTVGAVLLALVALFVTLAGAQCTTCVAPGPAKARVALT 120
Query: 585 XXXXXXXXXXXXMVPVSWTAHNVIRDFYNPLVASGQKREMGASLYIGWXXXXXXXXXXXX 764
+VP+ W A+ V+R+FY+P V QK E+GA+LYIGW
Sbjct: 121 GGALYALCGLLALVPLCWFANIVVREFYDPTVPMSQKYELGAALYIGWAASALLMCGGGL 180
Query: 765 XCCN---CPPRTDKPYSAKYSAARSAPAS 842
CC C R D + KYSA+R A+
Sbjct: 181 VCCGAWVCTGRPDFSFPVKYSASRRPTAT 209
>ref|NP_001035609.1| claudin-7 [Bos taurus].
Length = 211
Score = 153 bits (387), Expect = 3e-37
Identities = 76/208 (36%), Positives = 110/208 (52%), Gaps = 1/208 (0%)
Frame = +3
Query: 225 MASMGLQVMGIALAVLGWLGAILSCALPMWRVTAFIGSNIVTSQTIWEGLWMNCVVQSTG 404
MA+ GLQ++G ++A+LGW+G + A+P W+++++ G NI+T+Q +++GLWM+CV QSTG
Sbjct: 1 MANSGLQLLGFSMALLGWVGLVACTAIPQWQMSSYAGDNIITAQAMYKGLWMDCVTQSTG 60
Query: 405 QMQCKVYDSLLALPQDLQXXXXXXXXXXXXXXXXXXXXXXXXKCTNC-VDDESAKAKTMI 581
M CK+YDS+L+LP LQ KCTNC DD+ KA+ +
Sbjct: 61 MMSCKMYDSVLSLPAALQATRALMVVSLVLGFLATFVATMGMKCTNCGGDDKVKKARIAM 120
Query: 582 XXXXXXXXXXXXXMVPVSWTAHNVIRDFYNPLVASGQKREMGASLYIGWXXXXXXXXXXX 761
++ SW H ++ DFYNPLV K E G +++IGW
Sbjct: 121 TGGIIFILAGLAALIACSWYGHQIVSDFYNPLVPMNVKYEFGPAIFIGWAGSALVLLGGA 180
Query: 762 XXCCNCPPRTDKPYSAKYSAARSAPASN 845
C+CP K A Y A RS P N
Sbjct: 181 LLSCSCPGSESK---AGYRAPRSYPKPN 205
>ref|NP_001091565.1| claudin-8 [Bos taurus].
Length = 225
Score = 149 bits (375), Expect = 8e-36
Identities = 72/184 (39%), Positives = 99/184 (53%), Gaps = 1/184 (0%)
Frame = +3
Query: 225 MASMGLQVMGIALAVLGWLGAILSCALPMWRVTAFIGSNIVTSQTIWEGLWMNCVVQSTG 404
MA+ LQ+ G+ L +G +G + + +P WRV+AFI SNIV + +WEGLWM+C+ +
Sbjct: 1 MATYALQIAGLVLGGVGMVGTVAATVMPQWRVSAFIESNIVVFENLWEGLWMSCMRHANI 60
Query: 405 QMQCKVYDSLLALPQDLQXXXXXXXXXXXXXXXXXXXXXXXXKCTNCV-DDESAKAKTMI 581
+MQCK+YDSLLAL DLQ KCT C DD+ K ++
Sbjct: 61 RMQCKIYDSLLALSPDLQAARGLMCAASVLAFLAFLTAVLGMKCTRCAGDDDKVKGHILL 120
Query: 582 XXXXXXXXXXXXXMVPVSWTAHNVIRDFYNPLVASGQKREMGASLYIGWXXXXXXXXXXX 761
++PVSW A+++IRDFYNP+V QKRE+G +LYIGW
Sbjct: 121 TAGVIFIITGLVVLIPVSWVANSIIRDFYNPIVDIAQKRELGEALYIGWTTALVLIVGGA 180
Query: 762 XXCC 773
CC
Sbjct: 181 LFCC 184
>ref|NP_001001854.1| claudin-1 [Bos taurus].
Length = 211
Score = 148 bits (373), Expect = 1e-35
Identities = 75/207 (36%), Positives = 109/207 (52%), Gaps = 1/207 (0%)
Frame = +3
Query: 225 MASMGLQVMGIALAVLGWLGAILSCALPMWRVTAFIGSNIVTSQTIWEGLWMNCVVQSTG 404
MA+ GLQ++G LA LGW+G+I+S ALP W+V ++ NIVT+Q I+EGLWM+CV QSTG
Sbjct: 1 MANAGLQLLGFILAFLGWIGSIVSTALPQWKVYSYASDNIVTAQAIYEGLWMSCVSQSTG 60
Query: 405 QMQCKVYDSLLALPQDLQXXXXXXXXXXXXXXXXXXXXXXXXKCTNCV-DDESAKAKTMI 581
Q+QCKV+DSLL L LQ KC C+ DDE+ K + +
Sbjct: 61 QIQCKVFDSLLNLNSTLQATRALMVIGILLGLIAIFVATVGMKCMKCMEDDEAQKMRMAV 120
Query: 582 XXXXXXXXXXXXXMVPVSWTAHNVIRDFYNPLVASGQKREMGASLYIGWXXXXXXXXXXX 761
+V +W + ++++FY+P+ + E G +L+IGW
Sbjct: 121 FGGVIFLISGLAILVATAWYGNRIVQEFYDPMTPVNARYEFGQALFIGWAAASLCLLGGA 180
Query: 762 XXCCNCPPRTDKPYSAKYSAARSAPAS 842
CC+CP +T Y + AP+S
Sbjct: 181 LLCCSCPRKTTS-YPTPRPYPKPAPSS 206
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 54,805,433
Number of extensions: 1684491
Number of successful extensions: 9619
Number of sequences better than 1.0e-05: 26
Number of HSP's gapped: 9528
Number of HSP's successfully gapped: 26
Length of query: 464
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 358
Effective length of database: 14,174,046
Effective search space: 5074308468
Effective search space used: 5074308468
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002350
(1394 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_546920.2| PREDICTED: similar to claudin 4 [Canis familiar... 299 4e-81
Alignment gi|NP_001003088.1| claudin-3 [Canis lupus familiaris]. 226 3e-59
Alignment gi|XP_547168.1| PREDICTED: similar to claudin 6 [Canis familiar... 219 5e-57
Alignment gi|XP_547169.1| PREDICTED: similar to claudin 9 [Canis familiar... 213 4e-55
Alignment gi|XP_543546.2| PREDICTED: similar to claudin 5 [Canis familiar... 175 8e-44
Alignment gi|XP_851577.1| PREDICTED: similar to claudin 8 [Canis familiar... 155 7e-38
Alignment gi|XP_850248.1| PREDICTED: similar to Claudin-1 [Canis familiar... 148 1e-35
Alignment gi|XP_546584.2| PREDICTED: similar to Claudin-7 (CLDN-7) [Canis... 147 2e-35
Alignment gi|XP_544844.1| PREDICTED: similar to Claudin-17 [Canis familia... 134 2e-31
Alignment gi|XP_544876.1| PREDICTED: similar to claudin 14 (predicted) [C... 133 4e-31
>ref|XP_546920.2| PREDICTED: similar to claudin 4 [Canis familiaris].
Length = 210
Score = 299 bits (766), Expect = 4e-81
Identities = 152/210 (72%), Positives = 156/210 (74%), Gaps = 1/210 (0%)
Frame = +3
Query: 225 MASMGLQVMGIALAVLGWLGAILSCALPMWRVTAFIGSNIVTSQTIWEGLWMNCVVQSTG 404
MASMGLQVMGIALAVLGWLGAILSCALPMWRVTAFIGSNIVTSQTIWEGLWMNCVVQSTG
Sbjct: 1 MASMGLQVMGIALAVLGWLGAILSCALPMWRVTAFIGSNIVTSQTIWEGLWMNCVVQSTG 60
Query: 405 QMQCKVYDSLLALPQDLQXXXXXXXXXXXXXXXXXXXXXXXXKCTNCVDDESAKAKTMIX 584
QMQCKVYDSLLALPQDLQ KCTNCV+DESAKAKTMI
Sbjct: 61 QMQCKVYDSLLALPQDLQAARALMVVSIILAALGVLLSVVGGKCTNCVEDESAKAKTMIV 120
Query: 585 XXXXXXXXXXXXMVPVSWTAHNVIRDFYNPLVASGQKREMGASLYIGWXXXXXXXXXXXX 764
MVP SWTA+N+IRDFYNPLV SGQKREMGASLY+GW
Sbjct: 121 AGVVFLLAGLLVMVPASWTANNIIRDFYNPLVVSGQKREMGASLYVGWAASGLLLLGGAL 180
Query: 765 XCCNCPPRTDKPYSAKYS-AARSAPASNYV 851
CCNCPPR DKPYSAKYS AARSAPASNYV
Sbjct: 181 LCCNCPPRADKPYSAKYSAAARSAPASNYV 210
>ref|NP_001003088.1| claudin-3 [Canis lupus familiaris].
Length = 218
Score = 226 bits (577), Expect = 3e-59
Identities = 113/203 (55%), Positives = 129/203 (63%), Gaps = 2/203 (0%)
Frame = +3
Query: 231 SMGLQVMGIALAVLGWLGAILSCALPMWRVTAFIGSNIVTSQTIWEGLWMNCVVQSTGQM 410
SMGL++ G +LAVLGWL I+ CALPMWRVTAFIGS+I+T+Q WEGLWMNCVVQSTGQM
Sbjct: 2 SMGLEIAGTSLAVLGWLSTIVCCALPMWRVTAFIGSSIITAQITWEGLWMNCVVQSTGQM 61
Query: 411 QCKVYDSLLALPQDLQXXXXXXXXXXXXXXXXXXXXXXXXKCTNCVDDESAKAKTMIXXX 590
QCKVYDSLLALPQDLQ +CTNCV D++AKAK I
Sbjct: 62 QCKVYDSLLALPQDLQAARALIVVSILLAAFGLLVALVGAQCTNCVQDDTAKAKITIVAG 121
Query: 591 XXXXXXXXXXMVPVSWTAHNVIRDFYNPLVASGQKREMGASLYIGWXXXXXXXXXXXXXC 770
+VPVSW+A+ +IRDFYNPLV QKREMGA LY+GW C
Sbjct: 122 VLFLLAALLTLVPVSWSANTIIRDFYNPLVPDAQKREMGAGLYVGWAAAALQLLGGALLC 181
Query: 771 CNCPPRTDK--PYSAKYSAARSA 833
C+CPPR K P YSA RSA
Sbjct: 182 CSCPPRDKKYAPTKIVYSAPRSA 204
>ref|XP_547168.1| PREDICTED: similar to claudin 6 [Canis familiaris].
Length = 221
Score = 219 bits (558), Expect = 5e-57
Identities = 108/221 (48%), Positives = 135/221 (61%), Gaps = 12/221 (5%)
Frame = +3
Query: 225 MASMGLQVMGIALAVLGWLGAILSCALPMWRVTAFIGSNIVTSQTIWEGLWMNCVVQSTG 404
MAS GLQ++GI L +LGW+ A++SCALP+W+VTAFIG++IV +Q +WEGLWM+CVVQSTG
Sbjct: 1 MASAGLQILGIILTLLGWVNALVSCALPLWKVTAFIGNSIVVAQVVWEGLWMSCVVQSTG 60
Query: 405 QMQCKVYDSLLALPQDLQXXXXXXXXXXXXXXXXXXXXXXXXKCTNCVDDESAKAKTMIX 584
QMQCKVYDSLLALPQDLQ KCT CV+D+ +KA+ ++
Sbjct: 61 QMQCKVYDSLLALPQDLQAARALCVVALLLALLGLLVYLAGAKCTTCVEDKDSKARLVLV 120
Query: 585 XXXXXXXXXXXXMVPVSWTAHNVIRDFYNPLVASGQKREMGASLYIGWXXXXXXXXXXXX 764
++PV WTAH +IRDFYNPLV+ QKRE+GASLY+GW
Sbjct: 121 SGIIFVISGVLTLIPVCWTAHAIIRDFYNPLVSDAQKRELGASLYLGWAASGLLLLGGGL 180
Query: 765 XCCNCPP---RTDKPYSAKYSA---------ARSAPASNYV 851
CC CP R+ Y A+YSA A P NYV
Sbjct: 181 LCCTCPSGGGRSSSHYMARYSASAAHATSPCAPEYPTKNYV 221
>ref|XP_547169.1| PREDICTED: similar to claudin 9 [Canis familiaris].
Length = 217
Score = 213 bits (542), Expect = 4e-55
Identities = 100/193 (51%), Positives = 126/193 (65%), Gaps = 1/193 (0%)
Frame = +3
Query: 225 MASMGLQVMGIALAVLGWLGAILSCALPMWRVTAFIGSNIVTSQTIWEGLWMNCVVQSTG 404
MAS L+++G+ LAVLGWLG ++SCALP+W+VTAFIG++IV +Q +WEGLWM+CVVQSTG
Sbjct: 1 MASTALELLGMTLAVLGWLGTLVSCALPLWKVTAFIGNSIVVAQVVWEGLWMSCVVQSTG 60
Query: 405 QMQCKVYDSLLALPQDLQXXXXXXXXXXXXXXXXXXXXXXXXKCTNCVDDESAKAKTMIX 584
QMQCKVYDSLLALPQDLQ +CT CV+DE AKA+ ++
Sbjct: 61 QMQCKVYDSLLALPQDLQAARALCVVALLLALLGLLVAITGAQCTTCVEDEGAKARIVLT 120
Query: 585 XXXXXXXXXXXXMVPVSWTAHNVIRDFYNPLVASGQKREMGASLYIGWXXXXXXXXXXXX 764
++PV WTAH +I+DFYNPLVA KRE+GASLY+GW
Sbjct: 121 AGVLLLLSGLLVLIPVCWTAHAIIQDFYNPLVAEALKRELGASLYLGWAAAALLMLGGGL 180
Query: 765 XCCNC-PPRTDKP 800
CC C PP+ D+P
Sbjct: 181 LCCTCPPPQMDRP 193
>ref|XP_543546.2| PREDICTED: similar to claudin 5 [Canis familiaris].
Length = 302
Score = 175 bits (444), Expect = 8e-44
Identities = 88/210 (41%), Positives = 117/210 (55%), Gaps = 3/210 (1%)
Frame = +3
Query: 222 AMASMGLQVMGIALAVLGWLGAILSCALPMWRVTAFIGSNIVTSQTIWEGLWMNCVVQST 401
AM S L+++G+ L ++GW+G IL+C LPMW+VTAF+ NIVT+QT W+GLWM+CVVQST
Sbjct: 84 AMGSAALEILGLVLCLVGWVGLILACGLPMWQVTAFLDHNIVTAQTTWKGLWMSCVVQST 143
Query: 402 GQMQCKVYDSLLALPQDLQXXXXXXXXXXXXXXXXXXXXXXXXKCTNCVDDESAKAKTMI 581
G MQCKVYDS+LAL ++Q +CT CV AKA+ +
Sbjct: 144 GHMQCKVYDSVLALSTEVQAARALTVGAVLLALVALFVTLAGAQCTTCVAPGPAKARVAL 203
Query: 582 XXXXXXXXXXXXXMVPVSWTAHNVIRDFYNPLVASGQKREMGASLYIGWXXXXXXXXXXX 761
+VP+ W A+ V+R+FY+P V QK E+GA+LYIGW
Sbjct: 204 TGGALYALCGLLALVPLCWFANIVVREFYDPTVPMSQKYELGAALYIGWAASALLMCGGG 263
Query: 762 XXCCN---CPPRTDKPYSAKYSAARSAPAS 842
CC C R D + KYSA R A+
Sbjct: 264 LVCCGAWVCAGRPDFSFPVKYSAPRRPTAT 293
>ref|XP_851577.1| PREDICTED: similar to claudin 8 [Canis familiaris].
Length = 225
Score = 155 bits (393), Expect = 7e-38
Identities = 81/211 (38%), Positives = 109/211 (51%), Gaps = 2/211 (0%)
Frame = +3
Query: 225 MASMGLQVMGIALAVLGWLGAILSCALPMWRVTAFIGSNIVTSQTIWEGLWMNCVVQSTG 404
MA+ LQ+ G+ L G +G + +P WRV+AFIGSNIV + WEGLWMNCV Q+
Sbjct: 1 MATYALQIAGLVLGGFGMVGTLAVTIMPQWRVSAFIGSNIVVFENFWEGLWMNCVRQANI 60
Query: 405 QMQCKVYDSLLALPQDLQXXXXXXXXXXXXXXXXXXXXXXXXKCTNCV-DDESAKAKTMI 581
+MQCKVYDSLLAL DLQ KCT C DDE K ++
Sbjct: 61 RMQCKVYDSLLALSPDLQASRGLMCAASVLSFLAFMTAVLGMKCTRCTGDDEKIKGHILL 120
Query: 582 XXXXXXXXXXXXXMVPVSWTAHNVIRDFYNPLVASGQKREMGASLYIGWXXXXXXXXXXX 761
++PVSW A+++IR+FYNP+V + QK E+G +LYIGW
Sbjct: 121 TAGIIFIVTGILVLIPVSWVANSIIREFYNPIVETAQKHELGDALYIGWTTALVLIAGGA 180
Query: 762 XXCC-NCPPRTDKPYSAKYSAARSAPASNYV 851
CC +C + Y + R+A S ++
Sbjct: 181 LFCCVSCYSEKSRSYRYSIPSHRTAQKSYHM 211
>ref|XP_850248.1| PREDICTED: similar to Claudin-1 [Canis familiaris].
Length = 211
Score = 148 bits (373), Expect = 1e-35
Identities = 75/207 (36%), Positives = 108/207 (52%), Gaps = 1/207 (0%)
Frame = +3
Query: 225 MASMGLQVMGIALAVLGWLGAILSCALPMWRVTAFIGSNIVTSQTIWEGLWMNCVVQSTG 404
MA+ GLQ++G LA LGW+G+I+S ALP W++ ++ G NIVT+Q I+EGLWM+CV QSTG
Sbjct: 1 MANAGLQLLGFLLAFLGWVGSIVSTALPQWKIYSYAGDNIVTAQAIYEGLWMSCVSQSTG 60
Query: 405 QMQCKVYDSLLALPQDLQXXXXXXXXXXXXXXXXXXXXXXXXKCTNCV-DDESAKAKTMI 581
Q+QCKV+DSLL L LQ KC C+ DDE K + +
Sbjct: 61 QIQCKVFDSLLNLNSTLQATRALMVIGILLGLIAIFVATIGMKCMKCMEDDEVQKMRMAV 120
Query: 582 XXXXXXXXXXXXXMVPVSWTAHNVIRDFYNPLVASGQKREMGASLYIGWXXXXXXXXXXX 761
+V +W + +++DFY+P+ + E G +L+ GW
Sbjct: 121 IGGVIFLIAGLAVLVATAWYGNRIVQDFYDPMTPVNARYEFGQALFTGWAAASLCLLGGA 180
Query: 762 XXCCNCPPRTDKPYSAKYSAARSAPAS 842
CC+CP +T Y + AP+S
Sbjct: 181 LLCCSCPRKTTS-YPTPRPYPKPAPSS 206
>ref|XP_546584.2| PREDICTED: similar to Claudin-7 (CLDN-7) [Canis familiaris].
Length = 217
Score = 147 bits (371), Expect = 2e-35
Identities = 77/214 (35%), Positives = 104/214 (48%), Gaps = 7/214 (3%)
Frame = +3
Query: 225 MASMGLQVMGIALAVLGWLGAILSCALPMWRVTAFIGSNIVTSQTIWEGLWMNCVVQSTG 404
MA+ GLQ++G ALA++GW G + S A+P W+++++ G NI+T+Q +++GLWM CV QSTG
Sbjct: 1 MANSGLQLLGFALALVGWAGLVASTAIPQWQMSSYAGDNIITAQAMYKGLWMECVTQSTG 60
Query: 405 QMQCKVYDSLLALPQDLQXXXXXXXXXXXXXXXXXXXXXXXXKCTNCVDDESAKAKTMIX 584
M CK+YDS+LAL LQ KCTNC D+ K +
Sbjct: 61 MMSCKMYDSVLALSAALQATRALMVVSLVLGFLAMFVATMGMKCTNCGGDDKVKKARIAM 120
Query: 585 XXXXXXXXXXXXMVP-------VSWTAHNVIRDFYNPLVASGQKREMGASLYIGWXXXXX 743
P SW H ++ DFYNPLV K E G +++IGW
Sbjct: 121 TGGIIFIVGGEQQAPGLAALVACSWYGHQIVTDFYNPLVPMNIKYEFGPAIFIGWAGSAL 180
Query: 744 XXXXXXXXCCNCPPRTDKPYSAKYSAARSAPASN 845
C+CP K A Y A RS P N
Sbjct: 181 VILGGALLSCSCPGSESK---AGYRAPRSYPKPN 211
>ref|XP_544844.1| PREDICTED: similar to Claudin-17 [Canis familiaris].
Length = 224
Score = 134 bits (337), Expect = 2e-31
Identities = 68/169 (40%), Positives = 93/169 (55%), Gaps = 1/169 (0%)
Frame = +3
Query: 225 MASMGLQVMGIALAVLGWLGAILSCALPMWRVTAFIGSNIVTSQTIWEGLWMNCVVQSTG 404
MA LQ+ G+ L G +G + + LP WRV+AF+GSNI+ + +WEGLWMNCV Q+
Sbjct: 1 MAFYPLQIAGLVLGFFGLVGTLATTLLPQWRVSAFVGSNIIVFERLWEGLWMNCVRQAKI 60
Query: 405 QMQCKVYDSLLALPQDLQXXXXXXXXXXXXXXXXXXXXXXXXKCTNCV-DDESAKAKTMI 581
++QCK Y SLLALP L+ K C +E AKA +
Sbjct: 61 RLQCKFYSSLLALPPALEAARALMCVAVALSFIALLIGICGMKQIQCTGSNERAKAYLLG 120
Query: 582 XXXXXXXXXXXXXMVPVSWTAHNVIRDFYNPLVASGQKREMGASLYIGW 728
++PV WTA+ +IRDFYNP + GQKRE+GA+L++GW
Sbjct: 121 TSGVLFILTGIFVLIPVCWTANIIIRDFYNPAIHVGQKRELGAALFLGW 169
>ref|XP_544876.1| PREDICTED: similar to claudin 14 (predicted) [Canis familiaris].
Length = 237
Score = 133 bits (335), Expect = 4e-31
Identities = 73/208 (35%), Positives = 105/208 (50%), Gaps = 3/208 (1%)
Frame = +3
Query: 225 MASMGLQVMGIALAVLGWLGAILSCALPMWRVTAFIGSNIVTSQTIWEGLWMNCVVQSTG 404
MAS +Q++G L+ LG +G +++ LP WR TA +G+NI+T+ + +GLWM CV STG
Sbjct: 1 MASTAVQLLGFLLSFLGLVGTLITTILPHWRRTAHVGTNILTAVSYLKGLWMECVWHSTG 60
Query: 405 QMQCKVYDSLLALPQDLQXXXXXXXXXXXXXXXXXXXXXXXXKCTNCVDDESAKAKTMIX 584
QC++Y SLLALP+DLQ KCT C AK +
Sbjct: 61 IYQCQIYRSLLALPRDLQAARALMVISCLLSAAACACAVVGMKCTRCAKGTPAKTVCAVL 120
Query: 585 XXXXXXXXXXXXMVPVSWTAHNVIRDFYNPLVASGQKREMGASLYIGWXXXXXXXXXXXX 764
MV VSWT ++V+++FYNPL+ SG K E+G +LY+G+
Sbjct: 121 GGALFLLAGLLCMVAVSWTTNDVVQNFYNPLLPSGMKFELGQALYLGFISSSLSLIGGTL 180
Query: 765 XCCNC---PPRTDKPYSAKYSAARSAPA 839
C +C P + + A +APA
Sbjct: 181 LCLSCLDEVPSGPHQVPPRATTATTAPA 208
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 57,129,438
Number of extensions: 1734767
Number of successful extensions: 9743
Number of sequences better than 1.0e-05: 21
Number of HSP's gapped: 9639
Number of HSP's successfully gapped: 21
Length of query: 464
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 358
Effective length of database: 15,340,888
Effective search space: 5492037904
Effective search space used: 5492037904
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002350
(1394 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001296.1| claudin-4 [Homo sapiens]. 297 1e-80
Alignment gi|NP_001297.1| claudin-3 [Homo sapiens]. 231 2e-60
Alignment gi|NP_067018.2| claudin-6 [Homo sapiens]. 214 1e-55
Alignment gi|NP_066192.1| claudin-9 [Homo sapiens]. 214 2e-55
Alignment gi|NP_001124333.1| claudin-5 [Homo sapiens]. 173 4e-43
Alignment gi|NP_003268.2| claudin-5 [Homo sapiens]. 173 4e-43
Alignment gi|NP_001171951.1| claudin-7 isoform 1 [Homo sapiens]. 150 3e-36
Alignment gi|NP_001298.3| claudin-7 isoform 1 [Homo sapiens]. 150 3e-36
Alignment gi|NP_066924.1| claudin-1 [Homo sapiens]. 148 1e-35
Alignment gi|NP_955360.1| claudin-8 [Homo sapiens]. 144 2e-34
>ref|NP_001296.1| claudin-4 [Homo sapiens].
Length = 209
Score = 297 bits (761), Expect = 1e-80
Identities = 148/209 (70%), Positives = 155/209 (74%)
Frame = +3
Query: 225 MASMGLQVMGIALAVLGWLGAILSCALPMWRVTAFIGSNIVTSQTIWEGLWMNCVVQSTG 404
MASMGLQVMGIALAVLGWL +L CALPMWRVTAFIGSNIVTSQTIWEGLWMNCVVQSTG
Sbjct: 1 MASMGLQVMGIALAVLGWLAVMLCCALPMWRVTAFIGSNIVTSQTIWEGLWMNCVVQSTG 60
Query: 405 QMQCKVYDSLLALPQDLQXXXXXXXXXXXXXXXXXXXXXXXXKCTNCVDDESAKAKTMIX 584
QMQCKVYDSLLALPQDLQ KCTNC++DESAKAKTMI
Sbjct: 61 QMQCKVYDSLLALPQDLQAARALVIISIIVAALGVLLSVVGGKCTNCLEDESAKAKTMIV 120
Query: 585 XXXXXXXXXXXXMVPVSWTAHNVIRDFYNPLVASGQKREMGASLYIGWXXXXXXXXXXXX 764
+VPVSWTAHN+I+DFYNPLVASGQKREMGASLY+GW
Sbjct: 121 AGVVFLLAGLMVIVPVSWTAHNIIQDFYNPLVASGQKREMGASLYVGWAASGLLLLGGGL 180
Query: 765 XCCNCPPRTDKPYSAKYSAARSAPASNYV 851
CCNCPPRTDKPYSAKYSAARSA ASNYV
Sbjct: 181 LCCNCPPRTDKPYSAKYSAARSAAASNYV 209
>ref|NP_001297.1| claudin-3 [Homo sapiens].
Length = 220
Score = 231 bits (588), Expect = 2e-60
Identities = 116/203 (57%), Positives = 133/203 (65%), Gaps = 3/203 (1%)
Frame = +3
Query: 231 SMGLQVMGIALAVLGWLGAILSCALPMWRVTAFIGSNIVTSQTIWEGLWMNCVVQSTGQM 410
SMGL++ G ALAVLGWLG I+ CALPMWRV+AFIGSNI+TSQ IWEGLWMNCVVQSTGQM
Sbjct: 2 SMGLEITGTALAVLGWLGTIVCCALPMWRVSAFIGSNIITSQNIWEGLWMNCVVQSTGQM 61
Query: 411 QCKVYDSLLALPQDLQXXXXXXXXXXXXXXXXXXXXXXXXKCTNCVDDESAKAKTMIXXX 590
QCKVYDSLLALPQDLQ +CTNCV D++AKAK I
Sbjct: 62 QCKVYDSLLALPQDLQAARALIVVAILLAAFGLLVALVGAQCTNCVQDDTAKAKITIVAG 121
Query: 591 XXXXXXXXXXMVPVSWTAHNVIRDFYNPLVASGQKREMGASLYIGWXXXXXXXXXXXXXC 770
+VPVSW+A+ +IRDFYNP+V QKREMGA LY+GW C
Sbjct: 122 VLFLLAALLTLVPVSWSANTIIRDFYNPVVPEAQKREMGAGLYVGWAAAALQLLGGALLC 181
Query: 771 CNCPPRTDKPYSAK---YSAARS 830
C+CPPR +K Y+A YSA RS
Sbjct: 182 CSCPPR-EKKYTATKVVYSAPRS 203
>ref|NP_067018.2| claudin-6 [Homo sapiens].
Length = 220
Score = 214 bits (546), Expect = 1e-55
Identities = 104/220 (47%), Positives = 133/220 (60%), Gaps = 11/220 (5%)
Frame = +3
Query: 225 MASMGLQVMGIALAVLGWLGAILSCALPMWRVTAFIGSNIVTSQTIWEGLWMNCVVQSTG 404
MAS G+Q++G+ L +LGW+ ++SCALPMW+VTAFIG++IV +Q +WEGLWM+CVVQSTG
Sbjct: 1 MASAGMQILGVVLTLLGWVNGLVSCALPMWKVTAFIGNSIVVAQVVWEGLWMSCVVQSTG 60
Query: 405 QMQCKVYDSLLALPQDLQXXXXXXXXXXXXXXXXXXXXXXXXKCTNCVDDESAKAKTMIX 584
QMQCKVYDSLLALPQDLQ KCT CV+++ +KA+ ++
Sbjct: 61 QMQCKVYDSLLALPQDLQAARALCVIALLVALFGLLVYLAGAKCTTCVEEKDSKARLVLT 120
Query: 585 XXXXXXXXXXXXMVPVSWTAHNVIRDFYNPLVASGQKREMGASLYIGWXXXXXXXXXXXX 764
++PV WTAH +IRDFYNPLVA QKRE+GASLY+GW
Sbjct: 121 SGIVFVISGVLTLIPVCWTAHAIIRDFYNPLVAEAQKRELGASLYLGWAASGLLLLGGGL 180
Query: 765 XCCNCP---PRTDKPYSAKYSAARSA--------PASNYV 851
CC CP + Y A+YS + A P NYV
Sbjct: 181 LCCTCPSGGSQGPSHYMARYSTSAPAISRGPSEYPTKNYV 220
>ref|NP_066192.1| claudin-9 [Homo sapiens].
Length = 217
Score = 214 bits (545), Expect = 2e-55
Identities = 99/187 (52%), Positives = 123/187 (65%)
Frame = +3
Query: 225 MASMGLQVMGIALAVLGWLGAILSCALPMWRVTAFIGSNIVTSQTIWEGLWMNCVVQSTG 404
MAS GL+++G+ LAVLGWLG ++SCALP+W+VTAFIG++IV +Q +WEGLWM+CVVQSTG
Sbjct: 1 MASTGLELLGMTLAVLGWLGTLVSCALPLWKVTAFIGNSIVVAQVVWEGLWMSCVVQSTG 60
Query: 405 QMQCKVYDSLLALPQDLQXXXXXXXXXXXXXXXXXXXXXXXXKCTNCVDDESAKAKTMIX 584
QMQCKVYDSLLALPQDLQ +CT CV+DE AKA+ ++
Sbjct: 61 QMQCKVYDSLLALPQDLQAARALCVIALLLALLGLLVAITGAQCTTCVEDEGAKARIVLT 120
Query: 585 XXXXXXXXXXXXMVPVSWTAHNVIRDFYNPLVASGQKREMGASLYIGWXXXXXXXXXXXX 764
++PV WTAH +I+DFYNPLVA KRE+GASLY+GW
Sbjct: 121 AGVILLLAGILVLIPVCWTAHAIIQDFYNPLVAEALKRELGASLYLGWAAAALLMLGGGL 180
Query: 765 XCCNCPP 785
CC CPP
Sbjct: 181 LCCTCPP 187
>ref|NP_001124333.1| claudin-5 [Homo sapiens].
Length = 303
Score = 173 bits (438), Expect = 4e-43
Identities = 88/210 (41%), Positives = 116/210 (55%), Gaps = 3/210 (1%)
Frame = +3
Query: 222 AMASMGLQVMGIALAVLGWLGAILSCALPMWRVTAFIGSNIVTSQTIWEGLWMNCVVQST 401
AM S L+++G+ L ++GW G IL+C LPMW+VTAF+ NIVT+QT W+GLWM+CVVQST
Sbjct: 85 AMGSAALEILGLVLCLVGWGGLILACGLPMWQVTAFLDHNIVTAQTTWKGLWMSCVVQST 144
Query: 402 GQMQCKVYDSLLALPQDLQXXXXXXXXXXXXXXXXXXXXXXXXKCTNCVDDESAKAKTMI 581
G MQCKVYDS+LAL ++Q +CT CV AKA+ +
Sbjct: 145 GHMQCKVYDSVLALSTEVQAARALTVSAVLLAFVALFVTLAGAQCTTCVAPGPAKARVAL 204
Query: 582 XXXXXXXXXXXXXMVPVSWTAHNVIRDFYNPLVASGQKREMGASLYIGWXXXXXXXXXXX 761
+VP+ W A+ V+R+FY+P V QK E+GA+LYIGW
Sbjct: 205 TGGVLYLFCGLLALVPLCWFANIVVREFYDPSVPVSQKYELGAALYIGWAATALLMVGGC 264
Query: 762 XXCCN---CPPRTDKPYSAKYSAARSAPAS 842
CC C R D + KYSA R A+
Sbjct: 265 LLCCGAWVCTGRPDLSFPVKYSAPRRPTAT 294
>ref|NP_003268.2| claudin-5 [Homo sapiens].
Length = 303
Score = 173 bits (438), Expect = 4e-43
Identities = 88/210 (41%), Positives = 116/210 (55%), Gaps = 3/210 (1%)
Frame = +3
Query: 222 AMASMGLQVMGIALAVLGWLGAILSCALPMWRVTAFIGSNIVTSQTIWEGLWMNCVVQST 401
AM S L+++G+ L ++GW G IL+C LPMW+VTAF+ NIVT+QT W+GLWM+CVVQST
Sbjct: 85 AMGSAALEILGLVLCLVGWGGLILACGLPMWQVTAFLDHNIVTAQTTWKGLWMSCVVQST 144
Query: 402 GQMQCKVYDSLLALPQDLQXXXXXXXXXXXXXXXXXXXXXXXXKCTNCVDDESAKAKTMI 581
G MQCKVYDS+LAL ++Q +CT CV AKA+ +
Sbjct: 145 GHMQCKVYDSVLALSTEVQAARALTVSAVLLAFVALFVTLAGAQCTTCVAPGPAKARVAL 204
Query: 582 XXXXXXXXXXXXXMVPVSWTAHNVIRDFYNPLVASGQKREMGASLYIGWXXXXXXXXXXX 761
+VP+ W A+ V+R+FY+P V QK E+GA+LYIGW
Sbjct: 205 TGGVLYLFCGLLALVPLCWFANIVVREFYDPSVPVSQKYELGAALYIGWAATALLMVGGC 264
Query: 762 XXCCN---CPPRTDKPYSAKYSAARSAPAS 842
CC C R D + KYSA R A+
Sbjct: 265 LLCCGAWVCTGRPDLSFPVKYSAPRRPTAT 294
>ref|NP_001171951.1| claudin-7 isoform 1 [Homo sapiens].
Length = 211
Score = 150 bits (379), Expect = 3e-36
Identities = 75/208 (36%), Positives = 109/208 (52%), Gaps = 1/208 (0%)
Frame = +3
Query: 225 MASMGLQVMGIALAVLGWLGAILSCALPMWRVTAFIGSNIVTSQTIWEGLWMNCVVQSTG 404
MA+ GLQ++G ++A+LGW+G + A+P W+++++ G NI+T+Q +++GLWM+CV QSTG
Sbjct: 1 MANSGLQLLGFSMALLGWVGLVACTAIPQWQMSSYAGDNIITAQAMYKGLWMDCVTQSTG 60
Query: 405 QMQCKVYDSLLALPQDLQXXXXXXXXXXXXXXXXXXXXXXXXKCTNC-VDDESAKAKTMI 581
M CK+YDS+LAL LQ KCT C DD+ KA+ +
Sbjct: 61 MMSCKMYDSVLALSAALQATRALMVVSLVLGFLAMFVATMGMKCTRCGGDDKVKKARIAM 120
Query: 582 XXXXXXXXXXXXXMVPVSWTAHNVIRDFYNPLVASGQKREMGASLYIGWXXXXXXXXXXX 761
+V SW H ++ DFYNPL+ + K E G +++IGW
Sbjct: 121 GGGIIFIVAGLAALVACSWYGHQIVTDFYNPLIPTNIKYEFGPAIFIGWAGSALVILGGA 180
Query: 762 XXCCNCPPRTDKPYSAKYSAARSAPASN 845
C+CP K A Y RS P SN
Sbjct: 181 LLSCSCPGNESK---AGYRVPRSYPKSN 205
>ref|NP_001298.3| claudin-7 isoform 1 [Homo sapiens].
Length = 211
Score = 150 bits (379), Expect = 3e-36
Identities = 75/208 (36%), Positives = 109/208 (52%), Gaps = 1/208 (0%)
Frame = +3
Query: 225 MASMGLQVMGIALAVLGWLGAILSCALPMWRVTAFIGSNIVTSQTIWEGLWMNCVVQSTG 404
MA+ GLQ++G ++A+LGW+G + A+P W+++++ G NI+T+Q +++GLWM+CV QSTG
Sbjct: 1 MANSGLQLLGFSMALLGWVGLVACTAIPQWQMSSYAGDNIITAQAMYKGLWMDCVTQSTG 60
Query: 405 QMQCKVYDSLLALPQDLQXXXXXXXXXXXXXXXXXXXXXXXXKCTNC-VDDESAKAKTMI 581
M CK+YDS+LAL LQ KCT C DD+ KA+ +
Sbjct: 61 MMSCKMYDSVLALSAALQATRALMVVSLVLGFLAMFVATMGMKCTRCGGDDKVKKARIAM 120
Query: 582 XXXXXXXXXXXXXMVPVSWTAHNVIRDFYNPLVASGQKREMGASLYIGWXXXXXXXXXXX 761
+V SW H ++ DFYNPL+ + K E G +++IGW
Sbjct: 121 GGGIIFIVAGLAALVACSWYGHQIVTDFYNPLIPTNIKYEFGPAIFIGWAGSALVILGGA 180
Query: 762 XXCCNCPPRTDKPYSAKYSAARSAPASN 845
C+CP K A Y RS P SN
Sbjct: 181 LLSCSCPGNESK---AGYRVPRSYPKSN 205
>ref|NP_066924.1| claudin-1 [Homo sapiens].
Length = 211
Score = 148 bits (374), Expect = 1e-35
Identities = 75/207 (36%), Positives = 108/207 (52%), Gaps = 1/207 (0%)
Frame = +3
Query: 225 MASMGLQVMGIALAVLGWLGAILSCALPMWRVTAFIGSNIVTSQTIWEGLWMNCVVQSTG 404
MA+ GLQ++G LA LGW+GAI+S ALP WR+ ++ G NIVT+Q ++EGLWM+CV QSTG
Sbjct: 1 MANAGLQLLGFILAFLGWIGAIVSTALPQWRIYSYAGDNIVTAQAMYEGLWMSCVSQSTG 60
Query: 405 QMQCKVYDSLLALPQDLQXXXXXXXXXXXXXXXXXXXXXXXXKCTNCV-DDESAKAKTMI 581
Q+QCKV+DSLL L LQ KC C+ DDE K + +
Sbjct: 61 QIQCKVFDSLLNLSSTLQATRALMVVGILLGVIAIFVATVGMKCMKCLEDDEVQKMRMAV 120
Query: 582 XXXXXXXXXXXXXMVPVSWTAHNVIRDFYNPLVASGQKREMGASLYIGWXXXXXXXXXXX 761
+V +W + ++++FY+P+ + E G +L+ GW
Sbjct: 121 IGGAIFLLAGLAILVATAWYGNRIVQEFYDPMTPVNARYEFGQALFTGWAAASLCLLGGA 180
Query: 762 XXCCNCPPRTDKPYSAKYSAARSAPAS 842
CC+CP +T Y + AP+S
Sbjct: 181 LLCCSCPRKTTS-YPTPRPYPKPAPSS 206
>ref|NP_955360.1| claudin-8 [Homo sapiens].
Length = 225
Score = 144 bits (363), Expect = 2e-34
Identities = 72/184 (39%), Positives = 97/184 (52%), Gaps = 1/184 (0%)
Frame = +3
Query: 225 MASMGLQVMGIALAVLGWLGAILSCALPMWRVTAFIGSNIVTSQTIWEGLWMNCVVQSTG 404
MA+ L++ G+ L +G +G + +P WRV+AFI +NIV + WEGLWMNCV Q+
Sbjct: 1 MATHALEIAGLFLGGVGMVGTVAVTVMPQWRVSAFIENNIVVFENFWEGLWMNCVRQANI 60
Query: 405 QMQCKVYDSLLALPQDLQXXXXXXXXXXXXXXXXXXXXXXXXKCTNCV-DDESAKAKTMI 581
+MQCK+YDSLLAL DLQ KCT C D+E KA ++
Sbjct: 61 RMQCKIYDSLLALSPDLQAARGLMCAASVMSFLAFMMAILGMKCTRCTGDNEKVKAHILL 120
Query: 582 XXXXXXXXXXXXXMVPVSWTAHNVIRDFYNPLVASGQKREMGASLYIGWXXXXXXXXXXX 761
++PVSW A+ +IRDFYN +V QKRE+G +LY+GW
Sbjct: 121 TAGIIFIITGMVVLIPVSWVANAIIRDFYNSIVNVAQKRELGEALYLGWTTALVLIVGGA 180
Query: 762 XXCC 773
CC
Sbjct: 181 LFCC 184
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 55,889,528
Number of extensions: 1682377
Number of successful extensions: 9042
Number of sequences better than 1.0e-05: 32
Number of HSP's gapped: 8944
Number of HSP's successfully gapped: 32
Length of query: 464
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 358
Effective length of database: 14,802,980
Effective search space: 5299466840
Effective search space used: 5299466840
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002350
(1394 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_034033.1| claudin-4 [Mus musculus]. 286 4e-77
Alignment gi|NP_034032.1| claudin-3 [Mus musculus]. 221 1e-57
Alignment gi|NP_064689.2| claudin-9 [Mus musculus]. 214 1e-55
Alignment gi|NP_061247.1| claudin-6 [Mus musculus]. 210 2e-54
Alignment gi|NP_038833.2| claudin-5 [Mus musculus]. 169 6e-42
Alignment gi|NP_001180548.1| claudin-7 [Mus musculus]. 156 3e-38
Alignment gi|NP_058583.1| claudin-7 [Mus musculus]. 156 3e-38
Alignment gi|NP_061248.1| claudin-8 [Mus musculus]. 145 6e-35
Alignment gi|NP_057883.1| claudin-1 [Mus musculus]. 141 1e-33
Alignment gi|NP_001159398.1| claudin-14 [Mus musculus]. 135 1e-31
>ref|NP_034033.1| claudin-4 [Mus musculus].
Length = 210
Score = 286 bits (731), Expect = 4e-77
Identities = 142/210 (67%), Positives = 154/210 (73%), Gaps = 1/210 (0%)
Frame = +3
Query: 225 MASMGLQVMGIALAVLGWLGAILSCALPMWRVTAFIGSNIVTSQTIWEGLWMNCVVQSTG 404
MASMGLQV+GI+LAVLGWLG ILSCALPMWRVTAFIGSNIVT+QT WEGLWMNCVVQSTG
Sbjct: 1 MASMGLQVLGISLAVLGWLGIILSCALPMWRVTAFIGSNIVTAQTSWEGLWMNCVVQSTG 60
Query: 405 QMQCKVYDSLLALPQDLQXXXXXXXXXXXXXXXXXXXXXXXXKCTNCVDDESAKAKTMIX 584
QMQCK+YDS+LALPQDLQ KCTNC++DE+ KAK MI
Sbjct: 61 QMQCKMYDSMLALPQDLQAARALMVISIIVGALGMLLSVVGGKCTNCMEDETVKAKIMIT 120
Query: 585 XXXXXXXXXXXXMVPVSWTAHNVIRDFYNPLVASGQKREMGASLYIGWXXXXXXXXXXXX 764
MVPVSWTAHNVIRDFYNP+VASGQKREMGASLY+GW
Sbjct: 121 AGAVFIVASMLIMVPVSWTAHNVIRDFYNPMVASGQKREMGASLYVGWAASGLLLLGGGL 180
Query: 765 XCCNCPPRT-DKPYSAKYSAARSAPASNYV 851
CC+CPPR+ DKPYSAKYSAARS PASNYV
Sbjct: 181 LCCSCPPRSNDKPYSAKYSAARSVPASNYV 210
>ref|NP_034032.1| claudin-3 [Mus musculus].
Length = 219
Score = 221 bits (562), Expect = 1e-57
Identities = 112/202 (55%), Positives = 129/202 (63%), Gaps = 2/202 (0%)
Frame = +3
Query: 231 SMGLQVMGIALAVLGWLGAILSCALPMWRVTAFIGSNIVTSQTIWEGLWMNCVVQSTGQM 410
SMGL++ G +LAVLGWL I+ CALPMWRV+AFIGS+I+T+Q WEGLWMNCVVQSTGQM
Sbjct: 2 SMGLEITGTSLAVLGWLCTIVCCALPMWRVSAFIGSSIITAQITWEGLWMNCVVQSTGQM 61
Query: 411 QCKVYDSLLALPQDLQXXXXXXXXXXXXXXXXXXXXXXXXKCTNCVDDESAKAKTMIXXX 590
QCK+YDSLLALPQDLQ +CTNCV DE+AKAK I
Sbjct: 62 QCKMYDSLLALPQDLQAARALIVVSILLAAFGLLVALVGAQCTNCVQDETAKAKITIVAG 121
Query: 591 XXXXXXXXXXMVPVSWTAHNVIRDFYNPLVASGQKREMGASLYIGWXXXXXXXXXXXXXC 770
+VPVSW+A+ +IRDFYNPLV QKREMGA LY+GW C
Sbjct: 122 VLFLLAALLTLVPVSWSANTIIRDFYNPLVPEAQKREMGAGLYVGWAAAALQLLGGALLC 181
Query: 771 CNCPPRTDK--PYSAKYSAARS 830
C+CPPR DK P YSA RS
Sbjct: 182 CSCPPR-DKYAPTKILYSAPRS 202
>ref|NP_064689.2| claudin-9 [Mus musculus].
Length = 217
Score = 214 bits (545), Expect = 1e-55
Identities = 99/187 (52%), Positives = 123/187 (65%)
Frame = +3
Query: 225 MASMGLQVMGIALAVLGWLGAILSCALPMWRVTAFIGSNIVTSQTIWEGLWMNCVVQSTG 404
MAS GL+++G+ LAVLGWLG ++SCALP+W+VTAFIG++IV +Q +WEGLWM+CVVQSTG
Sbjct: 1 MASTGLELLGMTLAVLGWLGTLVSCALPLWKVTAFIGNSIVVAQVVWEGLWMSCVVQSTG 60
Query: 405 QMQCKVYDSLLALPQDLQXXXXXXXXXXXXXXXXXXXXXXXXKCTNCVDDESAKAKTMIX 584
QMQCKVYDSLLALPQDLQ +CT CV+DE AKA+ ++
Sbjct: 61 QMQCKVYDSLLALPQDLQAARALCVVALLLALLGLLVAITGAQCTTCVEDEGAKARIVLT 120
Query: 585 XXXXXXXXXXXXMVPVSWTAHNVIRDFYNPLVASGQKREMGASLYIGWXXXXXXXXXXXX 764
++PV WTAH +I+DFYNPLVA KRE+GASLY+GW
Sbjct: 121 AGVLLLLSGILVLIPVCWTAHAIIQDFYNPLVAEALKRELGASLYLGWAAAALLMLGGGL 180
Query: 765 XCCNCPP 785
CC CPP
Sbjct: 181 LCCTCPP 187
>ref|NP_061247.1| claudin-6 [Mus musculus].
Length = 219
Score = 210 bits (535), Expect = 2e-54
Identities = 104/219 (47%), Positives = 133/219 (60%), Gaps = 10/219 (4%)
Frame = +3
Query: 225 MASMGLQVMGIALAVLGWLGAILSCALPMWRVTAFIGSNIVTSQTIWEGLWMNCVVQSTG 404
MAS GLQ++GI L +LGW+ A++SCALPMW+VTAFIG++IV +Q +WEGLWM+CVVQSTG
Sbjct: 1 MASTGLQILGIVLTLLGWVNALVSCALPMWKVTAFIGNSIVVAQMVWEGLWMSCVVQSTG 60
Query: 405 QMQCKVYDSLLALPQDLQXXXXXXXXXXXXXXXXXXXXXXXXKCTNCVDDESAKAKTMIX 584
QMQCKVYDSLLALPQDLQ KCT CV+D ++K++ ++
Sbjct: 61 QMQCKVYDSLLALPQDLQAARALCVVTLLIVLLGLLVYLAGAKCTTCVEDRNSKSRLVLI 120
Query: 585 XXXXXXXXXXXXMVPVSWTAHNVIRDFYNPLVASGQKREMGASLYIGWXXXXXXXXXXXX 764
++PV WTAH++I+DFYNPLVA QKRE+GASLY+GW
Sbjct: 121 SGIIFVISGVLTLIPVCWTAHSIIQDFYNPLVADAQKRELGASLYLGWAASGLLLLGGGL 180
Query: 765 XCCNCP---PRTDKPYSAKYSAA-------RSAPASNYV 851
CC C + + Y A YS + P NYV
Sbjct: 181 LCCACSSGGTQGPRHYMACYSTSVPHSRGPSEYPTKNYV 219
>ref|NP_038833.2| claudin-5 [Mus musculus].
Length = 218
Score = 169 bits (427), Expect = 6e-42
Identities = 84/209 (40%), Positives = 115/209 (55%), Gaps = 3/209 (1%)
Frame = +3
Query: 225 MASMGLQVMGIALAVLGWLGAILSCALPMWRVTAFIGSNIVTSQTIWEGLWMNCVVQSTG 404
M S L+++G+ L ++GW+G IL+C LPMW+VTAF+ NIVT+QT W+GLWM+CVVQSTG
Sbjct: 1 MGSAALEILGLVLCLVGWVGLILACGLPMWQVTAFLDHNIVTAQTTWKGLWMSCVVQSTG 60
Query: 405 QMQCKVYDSLLALPQDLQXXXXXXXXXXXXXXXXXXXXXXXXKCTNCVDDESAKAKTMIX 584
MQCKVY+S+LAL ++Q +CT CV KA+ +
Sbjct: 61 HMQCKVYESVLALSAEVQAARALTVGAVLLALVALFVTLTGAQCTTCVAPGPVKARVALT 120
Query: 585 XXXXXXXXXXXXMVPVSWTAHNVIRDFYNPLVASGQKREMGASLYIGWXXXXXXXXXXXX 764
+VP+ W A+ V+R+FY+P V QK E+GA+LYIGW
Sbjct: 121 GGALYAVCGLLALVPLCWFANIVVREFYDPTVPVSQKYELGAALYIGWAASALLMCGGGL 180
Query: 765 XCCN---CPPRTDKPYSAKYSAARSAPAS 842
CC C R + + KYSA R A+
Sbjct: 181 VCCGAWVCTGRPEFSFPVKYSAPRRPTAN 209
>ref|NP_001180548.1| claudin-7 [Mus musculus].
Length = 211
Score = 156 bits (395), Expect = 3e-38
Identities = 79/208 (37%), Positives = 110/208 (52%), Gaps = 1/208 (0%)
Frame = +3
Query: 225 MASMGLQVMGIALAVLGWLGAILSCALPMWRVTAFIGSNIVTSQTIWEGLWMNCVVQSTG 404
MA+ GLQ++G ++A+LGW+G I S A+P W+++++ G NI+T+Q +++GLWM CV QSTG
Sbjct: 1 MANSGLQLLGFSMAMLGWVGLIASTAIPQWQMSSYAGDNIITAQAMYKGLWMECVTQSTG 60
Query: 405 QMQCKVYDSLLALPQDLQXXXXXXXXXXXXXXXXXXXXXXXXKCTNC-VDDESAKAKTMI 581
M CK+YDS+LALP LQ KCT C DD++ KA+ +
Sbjct: 61 MMSCKMYDSVLALPGALQATRALMVVSLVLGFLAMFVATMGMKCTRCGGDDKAKKARIAM 120
Query: 582 XXXXXXXXXXXXXMVPVSWTAHNVIRDFYNPLVASGQKREMGASLYIGWXXXXXXXXXXX 761
+V SW H ++ DFYNPL K E G +++IGW
Sbjct: 121 TGGIVFIVAGLAALVACSWIGHQIVTDFYNPLTPMNVKYEFGPAIFIGWAGSALVLLGGA 180
Query: 762 XXCCNCPPRTDKPYSAKYSAARSAPASN 845
C+CP K A Y A RS P SN
Sbjct: 181 LLSCSCPGSESK---AAYRAPRSYPKSN 205
>ref|NP_058583.1| claudin-7 [Mus musculus].
Length = 211
Score = 156 bits (395), Expect = 3e-38
Identities = 79/208 (37%), Positives = 110/208 (52%), Gaps = 1/208 (0%)
Frame = +3
Query: 225 MASMGLQVMGIALAVLGWLGAILSCALPMWRVTAFIGSNIVTSQTIWEGLWMNCVVQSTG 404
MA+ GLQ++G ++A+LGW+G I S A+P W+++++ G NI+T+Q +++GLWM CV QSTG
Sbjct: 1 MANSGLQLLGFSMAMLGWVGLIASTAIPQWQMSSYAGDNIITAQAMYKGLWMECVTQSTG 60
Query: 405 QMQCKVYDSLLALPQDLQXXXXXXXXXXXXXXXXXXXXXXXXKCTNC-VDDESAKAKTMI 581
M CK+YDS+LALP LQ KCT C DD++ KA+ +
Sbjct: 61 MMSCKMYDSVLALPGALQATRALMVVSLVLGFLAMFVATMGMKCTRCGGDDKAKKARIAM 120
Query: 582 XXXXXXXXXXXXXMVPVSWTAHNVIRDFYNPLVASGQKREMGASLYIGWXXXXXXXXXXX 761
+V SW H ++ DFYNPL K E G +++IGW
Sbjct: 121 TGGIVFIVAGLAALVACSWIGHQIVTDFYNPLTPMNVKYEFGPAIFIGWAGSALVLLGGA 180
Query: 762 XXCCNCPPRTDKPYSAKYSAARSAPASN 845
C+CP K A Y A RS P SN
Sbjct: 181 LLSCSCPGSESK---AAYRAPRSYPKSN 205
>ref|NP_061248.1| claudin-8 [Mus musculus].
Length = 225
Score = 145 bits (367), Expect = 6e-35
Identities = 74/184 (40%), Positives = 98/184 (53%), Gaps = 1/184 (0%)
Frame = +3
Query: 225 MASMGLQVMGIALAVLGWLGAILSCALPMWRVTAFIGSNIVTSQTIWEGLWMNCVVQSTG 404
MA+ LQ+ + L +G +G + +P WRV+AFI SNIV + WEGLWMNC+ +
Sbjct: 1 MATYALQMAALVLGGVGMVGTVAVTIMPQWRVSAFIESNIVVFENRWEGLWMNCMRHANI 60
Query: 405 QMQCKVYDSLLALPQDLQXXXXXXXXXXXXXXXXXXXXXXXXKCTNCV-DDESAKAKTMI 581
+MQCKVYDSLLAL DLQ KCT C DDE+ K++ ++
Sbjct: 61 RMQCKVYDSLLALSPDLQASRGLMCAASVLAFLAFMTAILGMKCTRCTGDDENVKSRILL 120
Query: 582 XXXXXXXXXXXXXMVPVSWTAHNVIRDFYNPLVASGQKREMGASLYIGWXXXXXXXXXXX 761
++PVSW A+++IRDFYNPLV KRE+G +LYIGW
Sbjct: 121 TAGIIFFITGLVVLIPVSWVANSIIRDFYNPLVDVALKRELGEALYIGWTTALVLIAGGA 180
Query: 762 XXCC 773
CC
Sbjct: 181 LFCC 184
>ref|NP_057883.1| claudin-1 [Mus musculus].
Length = 211
Score = 141 bits (356), Expect = 1e-33
Identities = 74/211 (35%), Positives = 106/211 (50%), Gaps = 2/211 (0%)
Frame = +3
Query: 225 MASMGLQVMGIALAVLGWLGAILSCALPMWRVTAFIGSNIVTSQTIWEGLWMNCVVQSTG 404
MA+ GLQ++G LA LGW+G+I+S ALP W++ ++ G NIVT+Q I+EGLWM+CV QSTG
Sbjct: 1 MANAGLQLLGFILASLGWIGSIVSTALPQWKIYSYAGDNIVTAQAIYEGLWMSCVSQSTG 60
Query: 405 QMQCKVYDSLLALPQDLQXXXXXXXXXXXXXXXXXXXXXXXXKCTNCV-DDESAKAKTMI 581
Q+QCKV+DSLL L LQ KC C+ DDE K +
Sbjct: 61 QIQCKVFDSLLNLNSTLQATRALMVIGILLGLIAIFVSTIGMKCMRCLEDDEVQKMWMAV 120
Query: 582 XXXXXXXXXXXXXMVPVSWTAHNVIRDFYNPLVASGQKREMGASLYIGWXXXXXXXXXXX 761
+V +W + ++++FY+PL + E G +L+ GW
Sbjct: 121 IGGIIFLISGLATLVATAWYGNRIVQEFYDPLTPINARYEFGQALFTGWAAASLCLLGGV 180
Query: 762 XXCCNCPPRTDK-PYSAKYSAARSAPASNYV 851
C+CP +T P Y + +YV
Sbjct: 181 LLSCSCPRKTTSYPTPRPYPKPTPSSGKDYV 211
>ref|NP_001159398.1| claudin-14 [Mus musculus].
Length = 239
Score = 135 bits (339), Expect = 1e-31
Identities = 74/211 (35%), Positives = 106/211 (50%), Gaps = 3/211 (1%)
Frame = +3
Query: 225 MASMGLQVMGIALAVLGWLGAILSCALPMWRVTAFIGSNIVTSQTIWEGLWMNCVVQSTG 404
MAS +Q++G L+ LG +G +++ LP WR TA +G+NI+T+ + +GLWM CV STG
Sbjct: 1 MASTAVQLLGFLLSFLGMVGTLITTILPHWRRTAHVGTNILTAVSYLKGLWMECVWHSTG 60
Query: 405 QMQCKVYDSLLALPQDLQXXXXXXXXXXXXXXXXXXXXXXXXKCTNCVDDESAKAKTMIX 584
QC++Y SLLALP+DLQ KCT C AK +
Sbjct: 61 IYQCQIYRSLLALPRDLQAARALMVISCLLSGMACACAVVGMKCTRCAKGTPAKTTFAVL 120
Query: 585 XXXXXXXXXXXXMVPVSWTAHNVIRDFYNPLVASGQKREMGASLYIGWXXXXXXXXXXXX 764
MV VSWT ++V+++FYNPL+ SG K E+G +LY+G+
Sbjct: 121 GGALFLLAGLLCMVAVSWTTNDVVQNFYNPLLPSGMKFEIGQALYLGFISSSLSLIGGTL 180
Query: 765 XCCNC---PPRTDKPYSAKYSAARSAPASNY 848
C +C P P ++ A +A A Y
Sbjct: 181 LCLSCQDEAPYRPYPPQSRAGATTTATAPAY 211
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 46,880,887
Number of extensions: 1375395
Number of successful extensions: 7005
Number of sequences better than 1.0e-05: 29
Number of HSP's gapped: 6923
Number of HSP's successfully gapped: 29
Length of query: 464
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 359
Effective length of database: 12,463,779
Effective search space: 4474496661
Effective search space used: 4474496661
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002350
(1394 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001155109.1| claudin-4 [Sus scrofa]. 314 9e-86
Alignment gi|NP_001155117.1| claudin-6 [Sus scrofa]. 213 3e-55
Alignment gi|NP_001155119.1| claudin-9 [Sus scrofa]. 212 4e-55
Alignment gi|NP_001155108.1| claudin-5 [Sus scrofa]. 172 4e-43
Alignment gi|NP_001155118.1| claudin-8 [Sus scrofa]. 154 9e-38
Alignment gi|NP_001153548.1| claudin-7 [Sus scrofa]. 149 5e-36
Alignment gi|NP_001153547.1| claudin-3 [Sus scrofa]. 149 5e-36
Alignment gi|XP_003358291.1| PREDICTED: claudin-7-like [Sus scrofa]. 149 5e-36
Alignment gi|XP_003358797.1| PREDICTED: claudin-1-like [Sus scrofa]. 147 2e-35
Alignment gi|NP_001155114.1| claudin-14 [Sus scrofa]. 138 6e-33
>ref|NP_001155109.1| claudin-4 [Sus scrofa].
Length = 209
Score = 314 bits (804), Expect = 9e-86
Identities = 159/209 (76%), Positives = 159/209 (76%)
Frame = +3
Query: 225 MASMGLQVMGIALAVLGWLGAILSCALPMWRVTAFIGSNIVTSQTIWEGLWMNCVVQSTG 404
MASMGLQVMGIALAVLGWLGAILSCALPMWRVTAFIGSNIVTSQTIWEGLWMNCVVQSTG
Sbjct: 1 MASMGLQVMGIALAVLGWLGAILSCALPMWRVTAFIGSNIVTSQTIWEGLWMNCVVQSTG 60
Query: 405 QMQCKVYDSLLALPQDLQXXXXXXXXXXXXXXXXXXXXXXXXKCTNCVDDESAKAKTMIX 584
QMQCKVYDSLLALPQDLQ KCTNCVDDESAKAKTMI
Sbjct: 61 QMQCKVYDSLLALPQDLQAARALIVICIILAVLGVLLSVVGGKCTNCVDDESAKAKTMIV 120
Query: 585 XXXXXXXXXXXXMVPVSWTAHNVIRDFYNPLVASGQKREMGASLYIGWXXXXXXXXXXXX 764
MVPVSWTAHNVIRDFYNPLVASGQKREMGASLYIGW
Sbjct: 121 AGVVFLLAGLLVMVPVSWTAHNVIRDFYNPLVASGQKREMGASLYIGWAASGLLMLGGAL 180
Query: 765 XCCNCPPRTDKPYSAKYSAARSAPASNYV 851
CCNCPPRTDKPYSAKYSAARSAPASNYV
Sbjct: 181 LCCNCPPRTDKPYSAKYSAARSAPASNYV 209
>ref|NP_001155117.1| claudin-6 [Sus scrofa].
Length = 221
Score = 213 bits (541), Expect = 3e-55
Identities = 102/209 (48%), Positives = 129/209 (61%), Gaps = 3/209 (1%)
Frame = +3
Query: 225 MASMGLQVMGIALAVLGWLGAILSCALPMWRVTAFIGSNIVTSQTIWEGLWMNCVVQSTG 404
MAS GLQ++GI L + GW+ A++ CALP+W+VTAFIG++IV +Q +WEGLWM+CVVQSTG
Sbjct: 1 MASAGLQILGIVLTLFGWVNALVCCALPLWKVTAFIGNSIVVAQVVWEGLWMSCVVQSTG 60
Query: 405 QMQCKVYDSLLALPQDLQXXXXXXXXXXXXXXXXXXXXXXXXKCTNCVDDESAKAKTMIX 584
QMQCKVYDSLLALPQDLQ KCT CV+D+ KA+ ++
Sbjct: 61 QMQCKVYDSLLALPQDLQAARALCVITLLVVLLGLLVYLSGAKCTTCVEDKDTKARLVLT 120
Query: 585 XXXXXXXXXXXXMVPVSWTAHNVIRDFYNPLVASGQKREMGASLYIGWXXXXXXXXXXXX 764
++PV WTAH +I+DFYNPLVA QKRE+GASLY+GW
Sbjct: 121 SGIIFVLSGVLTLIPVCWTAHAIIQDFYNPLVAEAQKRELGASLYLGWAASGLLLLGGGL 180
Query: 765 XCCNCP---PRTDKPYSAKYSAARSAPAS 842
CC CP + Y A+YSA+ AS
Sbjct: 181 LCCTCPSGRSQGSSHYMARYSASAPHTAS 209
>ref|NP_001155119.1| claudin-9 [Sus scrofa].
Length = 217
Score = 212 bits (540), Expect = 4e-55
Identities = 99/193 (51%), Positives = 126/193 (65%), Gaps = 1/193 (0%)
Frame = +3
Query: 225 MASMGLQVMGIALAVLGWLGAILSCALPMWRVTAFIGSNIVTSQTIWEGLWMNCVVQSTG 404
MAS GL+++G++LAVLGWLG ++ CALP+W+VTAFIG++IV +Q +WEGLWM+C VQSTG
Sbjct: 1 MASAGLELLGMSLAVLGWLGTLVCCALPLWKVTAFIGNSIVVAQVVWEGLWMSCAVQSTG 60
Query: 405 QMQCKVYDSLLALPQDLQXXXXXXXXXXXXXXXXXXXXXXXXKCTNCVDDESAKAKTMIX 584
QMQCKVYDSLLALPQDLQ +CT CV+DE AKA+ ++
Sbjct: 61 QMQCKVYDSLLALPQDLQAARALCVVALLLALLGLLVAITGAQCTTCVEDEGAKARIVLT 120
Query: 585 XXXXXXXXXXXXMVPVSWTAHNVIRDFYNPLVASGQKREMGASLYIGWXXXXXXXXXXXX 764
++PV WTAH +I+DFYNPLVA KRE+GASLY+GW
Sbjct: 121 AGVVLLLSGILVLIPVCWTAHAIIQDFYNPLVAEALKRELGASLYLGWAASALLMLGGGL 180
Query: 765 XCCNC-PPRTDKP 800
CC C PP+ D+P
Sbjct: 181 LCCTCPPPQIDRP 193
>ref|NP_001155108.1| claudin-5 [Sus scrofa].
Length = 218
Score = 172 bits (436), Expect = 4e-43
Identities = 86/209 (41%), Positives = 115/209 (55%), Gaps = 3/209 (1%)
Frame = +3
Query: 225 MASMGLQVMGIALAVLGWLGAILSCALPMWRVTAFIGSNIVTSQTIWEGLWMNCVVQSTG 404
M S L+++G+ L ++GW+G IL+C LPMW+VTAF+ NIVT+QT W+GLWM+CVVQSTG
Sbjct: 1 MGSAALEILGLVLCLVGWVGLILACGLPMWQVTAFLDHNIVTAQTTWKGLWMSCVVQSTG 60
Query: 405 QMQCKVYDSLLALPQDLQXXXXXXXXXXXXXXXXXXXXXXXXKCTNCVDDESAKAKTMIX 584
MQCKVYDS+LAL ++Q +CT CV KA+ +
Sbjct: 61 HMQCKVYDSVLALSTEVQAARALTVGAVLLALVALFVTLAGAQCTTCVAPGPGKARVALT 120
Query: 585 XXXXXXXXXXXXMVPVSWTAHNVIRDFYNPLVASGQKREMGASLYIGWXXXXXXXXXXXX 764
+VP+ W A+ V+R+FY+P V QK E+GA+LYIGW
Sbjct: 121 GGALYALCGLLALVPLCWFANIVVREFYDPTVPMSQKYELGAALYIGWAASALLMCGGGL 180
Query: 765 XCCN---CPPRTDKPYSAKYSAARSAPAS 842
CC C R D + KYSA R A+
Sbjct: 181 VCCGAWLCAGRPDLGFPVKYSAPRRPTAT 209
>ref|NP_001155118.1| claudin-8 [Sus scrofa].
Length = 225
Score = 154 bits (390), Expect = 9e-38
Identities = 76/184 (41%), Positives = 100/184 (54%), Gaps = 1/184 (0%)
Frame = +3
Query: 225 MASMGLQVMGIALAVLGWLGAILSCALPMWRVTAFIGSNIVTSQTIWEGLWMNCVVQSTG 404
MAS LQ+ G+ L +G +G + +P WRV+AFIGSNIV + +WEGLWMNC+ +
Sbjct: 1 MASNALQIAGLVLGGVGMVGTVAVTVMPQWRVSAFIGSNIVVFENLWEGLWMNCMRHANI 60
Query: 405 QMQCKVYDSLLALPQDLQXXXXXXXXXXXXXXXXXXXXXXXXKCTNCV-DDESAKAKTMI 581
+MQCK+YDSLLAL DLQ KCT C DDE K+ ++
Sbjct: 61 RMQCKIYDSLLALSPDLQASRGLMCTASVLSFLAFMTAILGMKCTRCTSDDEKVKSYILL 120
Query: 582 XXXXXXXXXXXXXMVPVSWTAHNVIRDFYNPLVASGQKREMGASLYIGWXXXXXXXXXXX 761
++PVSW A+++IRDFYNP+V QKRE+G +LYIGW
Sbjct: 121 TAGVLFVLTGFVVLIPVSWVANSIIRDFYNPIVDIAQKRELGEALYIGWTAALVLIAAGA 180
Query: 762 XXCC 773
CC
Sbjct: 181 LFCC 184
>ref|NP_001153548.1| claudin-7 [Sus scrofa].
Length = 211
Score = 149 bits (375), Expect = 5e-36
Identities = 74/208 (35%), Positives = 109/208 (52%), Gaps = 1/208 (0%)
Frame = +3
Query: 225 MASMGLQVMGIALAVLGWLGAILSCALPMWRVTAFIGSNIVTSQTIWEGLWMNCVVQSTG 404
MA+ GLQ++G ++A+LGW+G + A+P W+++++ G NI+T+Q +++GLWM+CV QSTG
Sbjct: 1 MANSGLQLLGFSMALLGWVGLVACTAIPQWQMSSYAGDNIITAQAMYKGLWMDCVTQSTG 60
Query: 405 QMQCKVYDSLLALPQDLQXXXXXXXXXXXXXXXXXXXXXXXXKCTNC-VDDESAKAKTMI 581
M CK YDS+LAL LQ KCTNC DD+ KA+ +
Sbjct: 61 MMSCKTYDSVLALSAALQATRALMVVSLVLGLMAMFVGTMGMKCTNCGGDDKVKKARIAM 120
Query: 582 XXXXXXXXXXXXXMVPVSWTAHNVIRDFYNPLVASGQKREMGASLYIGWXXXXXXXXXXX 761
++ SW H ++ DFYNPLV + K E G +++IGW
Sbjct: 121 TGGIIFIVAGLCALIACSWYGHQIVTDFYNPLVPTNVKYEFGPAIFIGWAGSSLVLLGGA 180
Query: 762 XXCCNCPPRTDKPYSAKYSAARSAPASN 845
C+CP + + Y A RS P N
Sbjct: 181 LLSCSCPGSEGQ---SGYRAPRSYPKPN 205
>ref|NP_001153547.1| claudin-3 [Sus scrofa].
Length = 141
Score = 149 bits (375), Expect = 5e-36
Identities = 70/116 (60%), Positives = 83/116 (71%)
Frame = +3
Query: 231 SMGLQVMGIALAVLGWLGAILSCALPMWRVTAFIGSNIVTSQTIWEGLWMNCVVQSTGQM 410
SMGL++ G +LAV+GWL I+ CALPMWRVTAFIGS+I+T++ WEGLWMNCVVQSTGQM
Sbjct: 2 SMGLEIAGTSLAVMGWLSTIVCCALPMWRVTAFIGSSIITARITWEGLWMNCVVQSTGQM 61
Query: 411 QCKVYDSLLALPQDLQXXXXXXXXXXXXXXXXXXXXXXXXKCTNCVDDESAKAKTM 578
QCKVYDSLLALPQDLQ +CTNCV D++AKAK +
Sbjct: 62 QCKVYDSLLALPQDLQAARALIVVAILLAAFGLLVALVGAQCTNCVQDDTAKAKIL 117
>ref|XP_003358291.1| PREDICTED: claudin-7-like [Sus scrofa].
Length = 211
Score = 149 bits (375), Expect = 5e-36
Identities = 74/208 (35%), Positives = 109/208 (52%), Gaps = 1/208 (0%)
Frame = +3
Query: 225 MASMGLQVMGIALAVLGWLGAILSCALPMWRVTAFIGSNIVTSQTIWEGLWMNCVVQSTG 404
MA+ GLQ++G ++A+LGW+G + A+P W+++++ G NI+T+Q +++GLWM+CV QSTG
Sbjct: 1 MANSGLQLLGFSMALLGWVGLVACTAIPQWQMSSYAGDNIITAQAMYKGLWMDCVTQSTG 60
Query: 405 QMQCKVYDSLLALPQDLQXXXXXXXXXXXXXXXXXXXXXXXXKCTNC-VDDESAKAKTMI 581
M CK YDS+LAL LQ KCTNC DD+ KA+ +
Sbjct: 61 MMSCKTYDSVLALSAALQATRALMVVSLVLGLMAMFVGTMGMKCTNCGGDDKVKKARIAM 120
Query: 582 XXXXXXXXXXXXXMVPVSWTAHNVIRDFYNPLVASGQKREMGASLYIGWXXXXXXXXXXX 761
++ SW H ++ DFYNPLV + K E G +++IGW
Sbjct: 121 TGGIIFIVAGLCALIACSWYGHQIVTDFYNPLVPTNVKYEFGPAIFIGWAGSSLVLLGGA 180
Query: 762 XXCCNCPPRTDKPYSAKYSAARSAPASN 845
C+CP + + Y A RS P N
Sbjct: 181 LLSCSCPGSEGQ---SGYRAPRSYPKPN 205
>ref|XP_003358797.1| PREDICTED: claudin-1-like [Sus scrofa].
Length = 211
Score = 147 bits (370), Expect = 2e-35
Identities = 74/211 (35%), Positives = 108/211 (51%), Gaps = 2/211 (0%)
Frame = +3
Query: 225 MASMGLQVMGIALAVLGWLGAILSCALPMWRVTAFIGSNIVTSQTIWEGLWMNCVVQSTG 404
MA+ GLQ++G LA LGW+G+I+S ALP W++ ++ G NIVT+Q I+EGLWM+CV QSTG
Sbjct: 1 MANAGLQLLGFILAFLGWIGSIVSTALPQWKIYSYAGDNIVTAQAIYEGLWMSCVSQSTG 60
Query: 405 QMQCKVYDSLLALPQDLQXXXXXXXXXXXXXXXXXXXXXXXXKCTNCV-DDESAKAKTMI 581
Q+QCKV+DSLL L LQ KC C+ DDE K + +
Sbjct: 61 QIQCKVFDSLLNLNSTLQATRALMVIGILLGLIAIFVATVGMKCMKCMEDDEVQKMRMAV 120
Query: 582 XXXXXXXXXXXXXMVPVSWTAHNVIRDFYNPLVASGQKREMGASLYIGWXXXXXXXXXXX 761
+V +W + ++++FY+P+ + E G +L+ GW
Sbjct: 121 IGGVIFLISGLAILVATAWYGNRIVQEFYDPMTPVNARYEFGQALFTGWAAASLCLLGGA 180
Query: 762 XXCCNCPPRTDK-PYSAKYSAARSAPASNYV 851
CC+CP +T P Y + +YV
Sbjct: 181 LLCCSCPRKTTSYPTPRPYPKPSPSSGKDYV 211
>ref|NP_001155114.1| claudin-14 [Sus scrofa].
Length = 239
Score = 138 bits (348), Expect = 6e-33
Identities = 77/210 (36%), Positives = 110/210 (52%), Gaps = 5/210 (2%)
Frame = +3
Query: 225 MASMGLQVMGIALAVLGWLGAILSCALPMWRVTAFIGSNIVTSQTIWEGLWMNCVVQSTG 404
MAS +Q++G L+ LG +G +L+ LP WR TA +G+NI+T+ + +GLWM CV STG
Sbjct: 1 MASTAVQLLGFLLSFLGLVGTLLTTLLPHWRRTAHVGTNILTAVSYLKGLWMECVWHSTG 60
Query: 405 QMQCKVYDSLLALPQDLQXXXXXXXXXXXXXXXXXXXXXXXXKCTNCVDDESAKAKTMIX 584
QC++Y SLLALP+DLQ KCT C AKA +
Sbjct: 61 IYQCQIYRSLLALPRDLQAARALMVISCLLSGVACACAVVGMKCTRCAKGTPAKATFAVL 120
Query: 585 XXXXXXXXXXXXMVPVSWTAHNVIRDFYNPLVASGQKREMGASLYIGWXXXXXXXXXXXX 764
+V VSWT ++V+++FYNPL+ SG K E+G +LY+G+
Sbjct: 121 GGVLFLLAGLLCLVAVSWTTNDVVQNFYNPLLPSGMKFEIGQALYLGFISSSLSLIGGTL 180
Query: 765 XCCNCPPRT-DKPYSAK----YSAARSAPA 839
C +C +PY A+ +AA +APA
Sbjct: 181 LCLSCQDEAPSRPYQAQPRAGTAAAPTAPA 210
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 35,503,931
Number of extensions: 1098791
Number of successful extensions: 6197
Number of sequences better than 1.0e-05: 20
Number of HSP's gapped: 6143
Number of HSP's successfully gapped: 20
Length of query: 464
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 362
Effective length of database: 8,804,438
Effective search space: 3187206556
Effective search space used: 3187206556
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002350
(1394 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr03 2658 0.0
Sscrofa_Chr14 125 7e-26
gb|GL895380.2| Sus scrofa unplaced genomic scaffold ChrUScaf3264 111 1e-21
Sscrofa_Chr13 72 9e-10
>Sscrofa_Chr03
|| Length = 144787322
Score = 2658 bits (1341), Expect = 0.0
Identities = 1372/1381 (99%), Gaps = 1/1381 (0%)
Strand = Plus / Minus
Query: 1 ggcactttggcggcaggaaggaactagtctgcgagcgcttgctgggcttgtgcctctgac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10778605 ggcactttggcggcaggaaggaactagtctgcgagcgcttgctgggcttgtgcctctgac 10778546
Query: 61 tcaggagagacgcttcaatcggctttgcctccggacttgcggtgaaaggcctctcttcgg 120
||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct: 10778545 tcaggagagacgcttcaatcggctttgcctctggacttgcggtgaaaagcctctcttcgg 10778486
Query: 121 acgctgactggccatcggtgttcaggtgtctggactctaacagcctccagggccggaccc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10778485 acgctgactggccatcggtgttcaggtgtctggactctaacagcctccagggccggaccc 10778426
Query: 181 cacagccttccttccagctcctagaccccagcagagcctgagccatggcttccatggggc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10778425 cacagccttccttccagctcctagaccccagcagagcctgagccatggcttccatggggc 10778366
Query: 241 tgcaggtgatgggtatcgccctggccgttctgggctggctgggggccatcctgagctgcg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10778365 tgcaggtgatgggtatcgccctggccgttctgggctggctgggggccatcctgagctgcg 10778306
Query: 301 cgctgcccatgtggcgcgtcacggccttcatcggcagcaacatcgtcacgtcgcagacca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10778305 cgctgcccatgtggcgcgtcacggccttcatcggcagcaacatcgtcacgtcgcagacca 10778246
Query: 361 tctgggagggcctgtggatgaactgcgtggtgcagagcacgggccagatgcagtgcaagg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10778245 tctgggagggcctgtggatgaactgcgtggtgcagagcacgggccagatgcagtgcaagg 10778186
Query: 421 tgtacgactcgctgctggcgctgccgcaggacctgcaggcggcccgcgccctcatcgtca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10778185 tgtacgactcgctgctggcgctgccgcaggacctgcaggcggcccgcgccctcatcgtca 10778126
Query: 481 tctgtatcatcctggccgtgctaggtgtgctgctgtcggtggtgggcggcaagtgcacca 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10778125 tctgtatcatcctggccgtgctaggtgtgctgctgtcggtggtgggcggcaagtgcacca 10778066
Query: 541 actgcgtggatgatgagagcgccaaggccaagaccatgatcgtggccggtgtggtgttcc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10778065 actgcgtggatgatgagagcgccaaggccaagaccatgatcgtggccggtgtggtgttcc 10778006
Query: 601 tgctggccggcctgctggtgatggtgcccgtgtcctggaccgcccacaatgtcatccgcg 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10778005 tgctggccggcctgctggtgatggtgcccgtgtcctggaccgcccacaatgtcatccgcg 10777946
Query: 661 acttctacaaccccctggtggcctcgggccagaagcgggagatgggtgcctcgctctaca 720
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10777945 acttctacaatcccctggtggcctcgggccagaagcgggagatgggtgcctcgctctaca 10777886
Query: 721 tcggctgggctgcctctggcctgctgatgctcggtggcgccctgctttgctgcaactgcc 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10777885 tcggctgggctgcctctggcctgctgatgctcggtggcgccctgctttgctgcaactgcc 10777826
Query: 781 caccccgtaccgacaagccctactcagccaagtactccgccgcccgctccgcccccgcca 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10777825 caccccgtaccgacaagccctactcagccaagtactccgccgcccgctccgcccccgcca 10777766
Query: 841 gcaactacgtgtaaggtgctaccgttgattcttttcctttcagcttggtttctccctgga 900
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 10777765 gcaactacgtgtaaggtgctaccgccgattcttttcctttcagcttggtttctccctgga 10777706
Query: 901 ctgcaatctgtgactccagaatggccctgccacgggcctcaggctgccagggctgggcaa 960
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 10777705 ctgcaatctgtgactccagaatggccctgccacgggccgcaggctgccagggctgggcaa 10777646
Query: 961 gcagggactgagccgggccgctggccagaggcccctcagcgccttctgaccctctcggac 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10777645 gcagggactgagccgggccgctggccagaggcccctcagcgccttctgaccctctcggac 10777586
Query: 1021 accttcccaaggccacttccaatgctagcaaggatggatggaaagagactcctgcgctgc 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10777585 accttcccaaggccacttccaatgctagcaaggatggatggaaagagactcctgcgctgc 10777526
Query: 1081 cctcctctgaatggctgtggatactgggggctggctcctgctggccaggacagctcagcc 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10777525 cctcctctgaatggctgtggatactgggggctggctcctgctggccaggacagctcagcc 10777466
Query: 1141 ctgactttgcgtgggctctgcctctgagtggacaatgtctcctcctttgaccttccccac 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10777465 ctgactttgcgtgggctctgcctctgagtggacaatgtctcctcctttgaccttccccac 10777406
Query: 1201 tgcctccgccggcatcctctgggtgggtcagccagcacttgggctgtgccttgcccacag 1260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10777405 tgcctccgccggcatcctctgggtgggtcagccagcacttgggctgtgccttgcccacag 10777346
Query: 1261 aaacctgtggccatgagatcggctgcctcgctcacccccctgcccgtggaacacagtcac 1320
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct: 10777345 aaacctgtggccatgagatcggctgccttgctcacccacctgcccgtggaacacagtcac 10777286
Query: 1321 cggagtggtgtggacagacaggtttagaggggaggggcagaggtgctac-aactggtttg 1379
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 10777285 cggagtggtgtggacagacaggtttagaggggaggggcagaggtgctacaaactggtttg 10777226
Query: 1380 g 1380
|
Sbjct: 10777225 g 10777225
Score = 303 bits (153), Expect = 1e-79
Identities = 195/209 (93%)
Strand = Plus / Minus
Query: 271 tgggctggctgggggccatcctgagctgcgcgctgcccatgtggcgcgtcacggccttca 330
||||||||||| | ||||| || ||||||||||||||||||||||||||||||||||||
Sbjct: 10716248 tgggctggctgagcaccatcgtgtgctgcgcgctgcccatgtggcgcgtcacggccttca 10716189
Query: 331 tcggcagcaacatcgtcacgtcgcagaccatctgggagggcctgtggatgaactgcgtgg 390
||||||||| ||| |||| |||||| || |||||||||||||||||||||||||||||
Sbjct: 10716188 tcggcagcagcattatcacagcgcagatcacctgggagggcctgtggatgaactgcgtgg 10716129
Query: 391 tgcagagcacgggccagatgcagtgcaaggtgtacgactcgctgctggcgctgccgcagg 450
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct: 10716128 tgcagagcacgggccagatgcagtgcaaagtgtacgactctctgctggcgctgccgcagg 10716069
Query: 451 acctgcaggcggcccgcgccctcatcgtc 479
|||||||||||||||||||||||||||||
Sbjct: 10716068 acctgcaggcggcccgcgccctcatcgtc 10716040
Score = 178 bits (90), Expect = 5e-42
Identities = 183/214 (85%)
Strand = Plus / Plus
Query: 260 cctggccgttctgggctggctgggggccatcctgagctgcgcgctgcccatgtggcgcgt 319
|||||| || ||||||||||||||| || | || ||||||| |||||| ||||| ||
Sbjct: 40526052 cctggctgtgctgggctggctggggaccctggtgtgctgcgccctgcccctgtggaaggt 40526111
Query: 320 cacggccttcatcggcagcaacatcgtcacgtcgcagaccatctgggagggcctgtggat 379
|| ||||||||||||| || |||||| | | ||| |||||||||| ||||||||
Sbjct: 40526112 gaccgccttcatcggcaacagcatcgtggtggcccaggtggtctgggaggggctgtggat 40526171
Query: 380 gaactgcgtggtgcagagcacgggccagatgcagtgcaaggtgtacgactcgctgctggc 439
| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 40526172 gtcctgcgtggtgcagagcacaggccagatgcagtgcaaggtgtacgactcgctgctggc 40526231
Query: 440 gctgccgcaggacctgcaggcggcccgcgccctc 473
||||| |||||||||||||||||||||||||||
Sbjct: 40526232 actgccccaggacctgcaggcggcccgcgccctc 40526265
Score = 153 bits (77), Expect = 3e-34
Identities = 104/113 (92%)
Strand = Plus / Minus
Query: 361 tctgggagggcctgtggatgaactgcgtggtgcagagcacgggccagatgcagtgcaagg 420
|||||||||| ||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct: 40528427 tctgggaggggctgtggatgtcctgcgtggtgcagagcacaggccagatgcagtgcaagg 40528368
Query: 421 tgtacgactcgctgctggcgctgccgcaggacctgcaggcggcccgcgccctc 473
|||| |||||||||||||| ||||| |||||||||||||| ||||| ||||||
Sbjct: 40528367 tgtatgactcgctgctggcactgccccaggacctgcaggcagcccgtgccctc 40528315
Score = 77.8 bits (39), Expect = 1e-11
Identities = 72/83 (86%)
Strand = Plus / Minus
Query: 660 gacttctacaaccccctggtggcctcgggccagaagcgggagatgggtgcctcgctctac 719
||||||||||||||||| ||||| || ||||||||||||| |||| ||||| ||||||
Sbjct: 40528128 gacttctacaaccccctagtggctgaggcccagaagcgggagctgggagcctccctctac 40528069
Query: 720 atcggctgggctgcctctggcct 742
| |||||||| |||||||||||
Sbjct: 40528068 ttgggctgggcggcctctggcct 40528046
>Sscrofa_Chr14
|| Length = 153851969
Score = 125 bits (63), Expect = 7e-26
Identities = 126/147 (85%)
Strand = Plus / Minus
Query: 297 tgcgcgctgcccatgtggcgcgtcacggccttcatcggcagcaacatcgtcacgtcgcag 356
|||| |||||||||||||| || || |||||| | | | ||||||||| ||| |||||
Sbjct: 54779262 tgcgggctgcccatgtggcaggtaaccgccttcctggaccacaacatcgtgacggcgcag 54779203
Query: 357 accatctgggagggcctgtggatgaactgcgtggtgcagagcacgggccagatgcagtgc 416
|||| ||| |||| ||||||||| ||||||||||||||||||||| || |||||||||
Sbjct: 54779202 accacttggaaggggctgtggatgtcctgcgtggtgcagagcacggggcatatgcagtgc 54779143
Query: 417 aaggtgtacgactcgctgctggcgctg 443
||||||||||||||| |||||||||||
Sbjct: 54779142 aaggtgtacgactcggtgctggcgctg 54779116
>gb|GL895380.2| Sus scrofa unplaced genomic scaffold ChrUScaf3264
Length = 41879
Score = 111 bits (56), Expect = 1e-21
Identities = 59/60 (98%)
Strand = Plus / Plus
Query: 420 gtgtacgactcgctgctggcgctgccgcaggacctgcaggcggcccgcgccctcatcgtc 479
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179 gtgtacgactctctgctggcgctgccgcaggacctgcaggcggcccgcgccctcatcgtc 238
>Sscrofa_Chr13
|| Length = 218635234
Score = 71.9 bits (36), Expect = 9e-10
Identities = 51/56 (91%)
Strand = Plus / Minus
Query: 428 ctcgctgctggcgctgccgcaggacctgcaggcggcccgcgccctcatcgtcatct 483
|||||||||||||||||| | |||||||||||||||||||| ||||| |||||||
Sbjct: 210157171 ctcgctgctggcgctgccccgcgacctgcaggcggcccgcgcgctcatggtcatct 210157116
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 34,839,132
Number of extensions: 263
Number of successful extensions: 263
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 263
Number of HSP's successfully gapped: 9
Length of query: 1394
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1373
Effective length of database: 2,808,413,156
Effective search space: 3855951263188
Effective search space used: 3855951263188
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)