Animal-Genome cDNA 20110601C-002376


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002376
         (1245 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001091491.1| renin receptor [Bos taurus].                      590   e-168

>ref|NP_001091491.1| renin receptor [Bos taurus].
          Length = 351

 Score =  590 bits (1520), Expect = e-168
 Identities = 298/334 (89%), Positives = 308/334 (92%)
 Frame = +1

Query: 184  NEFSILRSPGSVVFRDGNWPIPGERIPDVAALSMGFSVKEDLSWPGLAVGNLFHRPRATV 363
            NEFSILRSPGSVVFR+GNWPIPGERIPDVAALSMGFSVKEDLSWPGLAVGNLFHRPRATV
Sbjct: 18   NEFSILRSPGSVVFRNGNWPIPGERIPDVAALSMGFSVKEDLSWPGLAVGNLFHRPRATV 77

Query: 364  MVMVKGVDKLALPPGSVISYPLENAVPFSLDSVANSIHSLFSEETPVVLQLAPSEERVYM 543
            MVMVKGVDKLALPPGSVISYPLENAVPFSLDSVANSIHSLFSEETPVVLQLAPSEERVYM
Sbjct: 78   MVMVKGVDKLALPPGSVISYPLENAVPFSLDSVANSIHSLFSEETPVVLQLAPSEERVYM 137

Query: 544  VGKANSVFEDLSVTLRQLRSRLFQEXXXXXXXXXXXXXXXXEVDLLFLSELQVLHDISSL 723
            VGKANSVFEDLSVTLRQLR+RLFQE                EVDLLFLSELQVL DISSL
Sbjct: 138  VGKANSVFEDLSVTLRQLRNRLFQENSVLTSLPLNSLSRNNEVDLLFLSELQVLRDISSL 197

Query: 724  LSRHKHLAKDHSPDLYSLELAGLDEIGKRYGEDSEQFRDASKILVDALQKFADDMYNLYG 903
            LSRHKHLAKDHSPDLYSLELAGLDEIGK YGEDSEQFRDASKIL+DALQKFADDMYNLYG
Sbjct: 198  LSRHKHLAKDHSPDLYSLELAGLDEIGKHYGEDSEQFRDASKILIDALQKFADDMYNLYG 257

Query: 904  GNAVVELVTVRSFDTSLVRKTRTILEAKQVKDPPSPYNLAYKYNVDYPVVFNMILWIMIA 1083
            GNAVVELVTVRSFDTSLVRKTR ILE KQVKDP + YNLAYKYN +YPVVFN++LWIMI 
Sbjct: 258  GNAVVELVTVRSFDTSLVRKTRNILETKQVKDPSTTYNLAYKYNFEYPVVFNLVLWIMIG 317

Query: 1084 LALAVIITSYNIWDMDPGYDSIIYRMTNQKIRMD 1185
            LAL +I+T YNIW+MDPGYDSIIYRMTNQKIRMD
Sbjct: 318  LALTLIVTCYNIWNMDPGYDSIIYRMTNQKIRMD 351


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 44,930,682
Number of extensions: 1134222
Number of successful extensions: 3547
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3541
Number of HSP's successfully gapped: 1
Length of query: 415
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 310
Effective length of database: 14,207,134
Effective search space: 4404211540
Effective search space used: 4404211540
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002376
         (1245 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done

 ***** No hits found ******


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 46,903,594
Number of extensions: 1165409
Number of successful extensions: 3686
Number of sequences better than 1.0e-05: 0
Number of HSP's gapped: 3666
Number of HSP's successfully gapped: 0
Length of query: 415
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 310
Effective length of database: 15,374,224
Effective search space: 4766009440
Effective search space used: 4766009440
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002376
         (1245 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_005756.2| renin receptor [Homo sapiens].                       597   e-171

>ref|NP_005756.2| renin receptor [Homo sapiens].
          Length = 350

 Score =  597 bits (1540), Expect = e-171
 Identities = 303/334 (90%), Positives = 314/334 (94%)
 Frame = +1

Query: 184  NEFSILRSPGSVVFRDGNWPIPGERIPDVAALSMGFSVKEDLSWPGLAVGNLFHRPRATV 363
            NEFSIL+SPGSVVFR+GNWPIPGERIPDVAALSMGFSVKEDLSWPGLAVGNLFHRPRATV
Sbjct: 17   NEFSILKSPGSVVFRNGNWPIPGERIPDVAALSMGFSVKEDLSWPGLAVGNLFHRPRATV 76

Query: 364  MVMVKGVDKLALPPGSVISYPLENAVPFSLDSVANSIHSLFSEETPVVLQLAPSEERVYM 543
            MVMVKGV+KLALPPGSVISYPLENAVPFSLDSVANSIHSLFSEETPVVLQLAPSEERVYM
Sbjct: 77   MVMVKGVNKLALPPGSVISYPLENAVPFSLDSVANSIHSLFSEETPVVLQLAPSEERVYM 136

Query: 544  VGKANSVFEDLSVTLRQLRSRLFQEXXXXXXXXXXXXXXXXEVDLLFLSELQVLHDISSL 723
            VGKANSVFEDLSVTLRQLR+RLFQE                EVDLLFLSELQVLHDISSL
Sbjct: 137  VGKANSVFEDLSVTLRQLRNRLFQENSVLSSLPLNSLSRNNEVDLLFLSELQVLHDISSL 196

Query: 724  LSRHKHLAKDHSPDLYSLELAGLDEIGKRYGEDSEQFRDASKILVDALQKFADDMYNLYG 903
            LSRHKHLAKDHSPDLYSLELAGLDEIGKRYGEDSEQFRDASKILVDALQKFADDMY+LYG
Sbjct: 197  LSRHKHLAKDHSPDLYSLELAGLDEIGKRYGEDSEQFRDASKILVDALQKFADDMYSLYG 256

Query: 904  GNAVVELVTVRSFDTSLVRKTRTILEAKQVKDPPSPYNLAYKYNVDYPVVFNMILWIMIA 1083
            GNAVVELVTV+SFDTSL+RKTRTILEAKQ K+P SPYNLAYKYN +Y VVFNM+LWIMIA
Sbjct: 257  GNAVVELVTVKSFDTSLIRKTRTILEAKQAKNPASPYNLAYKYNFEYSVVFNMVLWIMIA 316

Query: 1084 LALAVIITSYNIWDMDPGYDSIIYRMTNQKIRMD 1185
            LALAVIITSYNIW+MDPGYDSIIYRMTNQKIRMD
Sbjct: 317  LALAVIITSYNIWNMDPGYDSIIYRMTNQKIRMD 350


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 46,184,728
Number of extensions: 1154410
Number of successful extensions: 3643
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3639
Number of HSP's successfully gapped: 1
Length of query: 415
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 310
Effective length of database: 14,835,944
Effective search space: 4599142640
Effective search space used: 4599142640
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002376
         (1245 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_081715.1| renin receptor precursor [Mus musculus].             581   e-166

>ref|NP_081715.1| renin receptor precursor [Mus musculus].
          Length = 350

 Score =  581 bits (1498), Expect = e-166
 Identities = 296/334 (88%), Positives = 312/334 (93%)
 Frame = +1

Query: 184  NEFSILRSPGSVVFRDGNWPIPGERIPDVAALSMGFSVKEDLSWPGLAVGNLFHRPRATV 363
            NEFSILRSPGSVVFR+GNWPIPG+RIPDVAALSMGFSVKEDLSWPGLAVGNLFHRPRAT+
Sbjct: 18   NEFSILRSPGSVVFRNGNWPIPGDRIPDVAALSMGFSVKEDLSWPGLAVGNLFHRPRATI 77

Query: 364  MVMVKGVDKLALPPGSVISYPLENAVPFSLDSVANSIHSLFSEETPVVLQLAPSEERVYM 543
            MVMVKGVDKLALP GSVISYPLENAVPFSLDSVANSIHSLFSEETPVVLQLAPSEERVYM
Sbjct: 78   MVMVKGVDKLALPAGSVISYPLENAVPFSLDSVANSIHSLFSEETPVVLQLAPSEERVYM 137

Query: 544  VGKANSVFEDLSVTLRQLRSRLFQEXXXXXXXXXXXXXXXXEVDLLFLSELQVLHDISSL 723
            VGKANSVFEDLSVTLRQLR+RLFQE                EVDLLFLSELQVLHDISSL
Sbjct: 138  VGKANSVFEDLSVTLRQLRNRLFQENSLLNSLPLNSLSRNNEVDLLFLSELQVLHDISSL 197

Query: 724  LSRHKHLAKDHSPDLYSLELAGLDEIGKRYGEDSEQFRDASKILVDALQKFADDMYNLYG 903
            LSRHKHLAKDHSPDLYSLELAGLDE+GKRYGEDSEQFRDASKILVDALQKFADDMY+LYG
Sbjct: 198  LSRHKHLAKDHSPDLYSLELAGLDELGKRYGEDSEQFRDASKILVDALQKFADDMYSLYG 257

Query: 904  GNAVVELVTVRSFDTSLVRKTRTILEAKQVKDPPSPYNLAYKYNVDYPVVFNMILWIMIA 1083
            GNAVVELVTV+SFDTSLVRK+RTILEAKQ ++  SPYNLAYKYN++Y VVFN++LWIMI 
Sbjct: 258  GNAVVELVTVKSFDTSLVRKSRTILEAKQ-ENTQSPYNLAYKYNLEYSVVFNLVLWIMIG 316

Query: 1084 LALAVIITSYNIWDMDPGYDSIIYRMTNQKIRMD 1185
            LALAVIITSYNIW+MDPGYDSIIYRMTNQKIR+D
Sbjct: 317  LALAVIITSYNIWNMDPGYDSIIYRMTNQKIRID 350


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 39,441,743
Number of extensions: 989144
Number of successful extensions: 3044
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3042
Number of HSP's successfully gapped: 1
Length of query: 415
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 311
Effective length of database: 12,493,815
Effective search space: 3885576465
Effective search space used: 3885576465
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002376
         (1245 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_003135070.1| PREDICTED: renin receptor-like [Sus scrofa].      620   e-178
Alignment   gi|XP_003360317.1| PREDICTED: hypothetical protein LOC100627392...   316   2e-86
Alignment   gi|XP_003360905.1| PREDICTED: renin receptor-like, partial [Sus...   300   9e-82

>ref|XP_003135070.1| PREDICTED: renin receptor-like [Sus scrofa].
          Length = 351

 Score =  620 bits (1600), Expect = e-178
 Identities = 317/334 (94%), Positives = 318/334 (95%)
 Frame = +1

Query: 184  NEFSILRSPGSVVFRDGNWPIPGERIPDVAALSMGFSVKEDLSWPGLAVGNLFHRPRATV 363
            NEFSILRSPGSVVFRDGNWPIPGERIPDVAALSMGFSVKEDLSWPGLAVGNLFHRPRATV
Sbjct: 18   NEFSILRSPGSVVFRDGNWPIPGERIPDVAALSMGFSVKEDLSWPGLAVGNLFHRPRATV 77

Query: 364  MVMVKGVDKLALPPGSVISYPLENAVPFSLDSVANSIHSLFSEETPVVLQLAPSEERVYM 543
            MVMVKGVDKLALPPGSVISYPLENAVPFSLDSVANSIHSLFSEETPVVLQLAPSEERVYM
Sbjct: 78   MVMVKGVDKLALPPGSVISYPLENAVPFSLDSVANSIHSLFSEETPVVLQLAPSEERVYM 137

Query: 544  VGKANSVFEDLSVTLRQLRSRLFQEXXXXXXXXXXXXXXXXEVDLLFLSELQVLHDISSL 723
            VGKANSVFEDLSVTLRQLRSRLFQE                EVDLLFLSELQVLHDISSL
Sbjct: 138  VGKANSVFEDLSVTLRQLRSRLFQENSILSLLPLNSLSRNNEVDLLFLSELQVLHDISSL 197

Query: 724  LSRHKHLAKDHSPDLYSLELAGLDEIGKRYGEDSEQFRDASKILVDALQKFADDMYNLYG 903
            LSRHKHLAKDHSPDLYSLELAGLDEIGKRYGEDSEQFRDASKILVDALQKFADDMYNLYG
Sbjct: 198  LSRHKHLAKDHSPDLYSLELAGLDEIGKRYGEDSEQFRDASKILVDALQKFADDMYNLYG 257

Query: 904  GNAVVELVTVRSFDTSLVRKTRTILEAKQVKDPPSPYNLAYKYNVDYPVVFNMILWIMIA 1083
            GNAVVELVTVRSFDTSLVRKTRTILEAKQVKDPPSPYNLAYKYNVDYPVVFNMILWIMIA
Sbjct: 258  GNAVVELVTVRSFDTSLVRKTRTILEAKQVKDPPSPYNLAYKYNVDYPVVFNMILWIMIA 317

Query: 1084 LALAVIITSYNIWDMDPGYDSIIYRMTNQKIRMD 1185
            LALAVIITSYNIW+MDPGYDSIIYRMTNQKIRMD
Sbjct: 318  LALAVIITSYNIWNMDPGYDSIIYRMTNQKIRMD 351


>ref|XP_003360317.1| PREDICTED: hypothetical protein LOC100627392 [Sus scrofa].
          Length = 515

 Score =  316 bits (809), Expect = 2e-86
 Identities = 164/181 (90%), Positives = 165/181 (91%)
 Frame = +1

Query: 184 NEFSILRSPGSVVFRDGNWPIPGERIPDVAALSMGFSVKEDLSWPGLAVGNLFHRPRATV 363
           NEFSILRSPGSVVFRDGNWPIPGERIPDVAALSMGFSVKEDLSWPGLAVGNLFHRPRATV
Sbjct: 295 NEFSILRSPGSVVFRDGNWPIPGERIPDVAALSMGFSVKEDLSWPGLAVGNLFHRPRATV 354

Query: 364 MVMVKGVDKLALPPGSVISYPLENAVPFSLDSVANSIHSLFSEETPVVLQLAPSEERVYM 543
           MVMVKGVDKLALPPGSVISYPLENAVPFSLDSVANSIHSLFSEETPVVLQLAPSEERVYM
Sbjct: 355 MVMVKGVDKLALPPGSVISYPLENAVPFSLDSVANSIHSLFSEETPVVLQLAPSEERVYM 414

Query: 544 VGKANSVFEDLSVTLRQLRSRLFQEXXXXXXXXXXXXXXXXEVDLLFLSELQVLHDISSL 723
           VGKANSVFEDLSVTLRQLRSRLFQE                EVDLLFLSELQVLHDISSL
Sbjct: 415 VGKANSVFEDLSVTLRQLRSRLFQENSILSLLPLNSLSRNNEVDLLFLSELQVLHDISSL 474

Query: 724 L 726
           +
Sbjct: 475 V 475


>ref|XP_003360905.1| PREDICTED: renin receptor-like, partial [Sus scrofa].
          Length = 279

 Score =  300 bits (769), Expect = 9e-82
 Identities = 157/180 (87%), Positives = 157/180 (87%)
 Frame = +1

Query: 184 NEFSILRSPGSVVFRDGNWPIPGERIPDVAALSMGFSVKEDLSWPGLAVGNLFHRPRATV 363
           NEFSILRSPGSVVFRDGNWPIPGERIPDVAALSMGFSVKEDLSWPGLAVGNLFHRPRATV
Sbjct: 100 NEFSILRSPGSVVFRDGNWPIPGERIPDVAALSMGFSVKEDLSWPGLAVGNLFHRPRATV 159

Query: 364 MVMVKGVDKLALPPGSVISYPLENAVPFSLDSVANSIHSLFSEETPVVLQLAPSEERVYM 543
           MVMVKGVDKLALPPGSVISYPLENAVPFSLDSVANSIHSLFSEETPVVLQLAPSEERVYM
Sbjct: 160 MVMVKGVDKLALPPGSVISYPLENAVPFSLDSVANSIHSLFSEETPVVLQLAPSEERVYM 219

Query: 544 VGKANSVFEDLSVTLRQLRSRLFQEXXXXXXXXXXXXXXXXEVDLLFLSELQVLHDISSL 723
           VGKANSVFEDLSVT       LFQE                EVDLLFLSELQVLHDISSL
Sbjct: 220 VGKANSVFEDLSVTXXXXXXXLFQENSILSLLPLNSLSRNNEVDLLFLSELQVLHDISSL 279


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 28,840,996
Number of extensions: 721391
Number of successful extensions: 2198
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2195
Number of HSP's successfully gapped: 3
Length of query: 415
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 314
Effective length of database: 8,829,335
Effective search space: 2772411190
Effective search space used: 2772411190
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002376
         (1245 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_ChrX                                                          454   e-125
gb|GL893021.2| Sus scrofa unplaced genomic scaffold ChrUScaf906       256   3e-65

>Sscrofa_ChrX 
||          Length = 144288218

 Score =  454 bits (229), Expect = e-125
 Identities = 249/253 (98%), Gaps = 2/253 (0%)
 Strand = Plus / Plus

                                                                            
Query: 993      gaaggacccaccaagtccctataaccttgcatacaagtataatgttgactatccagtggt 1052
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40397373 gaaggacccaccaagtccctataaccttgcatacaagtataatgttgactatccagtggt 40397432

                                                                            
Query: 1053     tttcaacatgatactttggataatgattgccttggccttggctgtgataatcacctctta 1112
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40397433 tttcaacatgatactttggataatgattgccttggccttggctgtgataatcacctctta 40397492

                                                                            
Query: 1113     caatatttgggacatggatcctggatatgacagcatcatttataggatgacaaaccagaa 1172
                |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40397493 caatatttggaacatggatcctggatatgacagcatcatttataggatgacaaaccagaa 40397552

                                                                            
Query: 1173     gattcgaatggactgaaactttccttatgccaaacttaaaacagaggtttggaaattggc 1232
                ||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| 
Sbjct: 40397553 gattcgaatggactg-aactttccttatgccaaacttagaacagaggtttggaaattgg- 40397610

                             
Query: 1233     ctgttttgttaaa 1245
                |||||||||||||
Sbjct: 40397611 ctgttttgttaaa 40397623



 Score =  347 bits (175), Expect = 9e-93
 Identities = 175/175 (100%)
 Strand = Plus / Plus

                                                                            
Query: 1        cgacgacggggagggctcaaggagtcggggcgagctagagctcgtcaccccctcgtgctg 60
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40369354 cgacgacggggagggctcaaggagtcggggcgagctagagctcgtcaccccctcgtgctg 40369413

                                                                            
Query: 61       tggtggtcgctcgcgttccgccggcccgttcgtgtgtgtgttgtcctgcacagctgcggc 120
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40369414 tggtggtcgctcgcgttccgccggcccgttcgtgtgtgtgttgtcctgcacagctgcggc 40369473

                                                                       
Query: 121      cgccgcggaaccatggctgtgctcgtcgccctcttgtccttggtggtggcgggtg 175
                |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40369474 cgccgcggaaccatggctgtgctcgtcgccctcttgtccttggtggtggcgggtg 40369528



 Score =  299 bits (151), Expect = 2e-78
 Identities = 151/151 (100%)
 Strand = Plus / Plus

                                                                            
Query: 723      gttgtctcgacacaagcatctagccaaggatcattctcctgatttatactcactggagct 782
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40393399 gttgtctcgacacaagcatctagccaaggatcattctcctgatttatactcactggagct 40393458

                                                                            
Query: 783      ggcaggtttggatgaaattgggaaacgttacggggaagactctgaacaatttagagatgc 842
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40393459 ggcaggtttggatgaaattgggaaacgttacggggaagactctgaacaatttagagatgc 40393518

                                               
Query: 843      ttctaagatccttgtcgatgctctgcaaaag 873
                |||||||||||||||||||||||||||||||
Sbjct: 40393519 ttctaagatccttgtcgatgctctgcaaaag 40393549



 Score =  278 bits (140), Expect = 7e-72
 Identities = 140/140 (100%)
 Strand = Plus / Plus

                                                                            
Query: 532      agagtgtacatggtgggaaaggcaaactcggtttttgaagatctttcggtaacacttaga 591
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40383677 agagtgtacatggtgggaaaggcaaactcggtttttgaagatctttcggtaacacttaga 40383736

                                                                            
Query: 592      caactccgcagtcgactgtttcaagaaaactctattctcagtttacttcccctcaattct 651
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40383737 caactccgcagtcgactgtttcaagaaaactctattctcagtttacttcccctcaattct 40383796

                                    
Query: 652      ctgagtaggaacaatgaagt 671
                ||||||||||||||||||||
Sbjct: 40383797 ctgagtaggaacaatgaagt 40383816



 Score =  264 bits (133), Expect = 1e-67
 Identities = 133/133 (100%)
 Strand = Plus / Plus

                                                                            
Query: 172      ggtgtcttagggaatgagtttagcatattaagatcaccagggtctgttgttttccgggat 231
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40375708 ggtgtcttagggaatgagtttagcatattaagatcaccagggtctgttgttttccgggat 40375767

                                                                            
Query: 232      ggaaattggcctataccaggagagcgaatcccagacgtggctgcattatccatgggcttc 291
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40375768 ggaaattggcctataccaggagagcgaatcccagacgtggctgcattatccatgggcttc 40375827

                             
Query: 292      tctgtcaaagaag 304
                |||||||||||||
Sbjct: 40375828 tctgtcaaagaag 40375840



 Score =  256 bits (129), Expect = 3e-65
 Identities = 132/133 (99%)
 Strand = Plus / Plus

                                                                            
Query: 304      gacctttcttggccgggccttgcagtgggtaacctgttccaccgtcctcgggctaccgtg 363
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40377982 gacctttcttggccgggccttgcagtgggtaacctgttccaccgtcctcgggctaccgtg 40378041

                                                                            
Query: 364      atggtgatggtgaagggagtggacaagctcgctctacccccaggcagcgtcatttcgtac 423
                |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 40378042 atggtgatggtgaagggagtggacaagctcgctctacccccaggcagcgtcatttcatac 40378101

                             
Query: 424      cctttggagaatg 436
                |||||||||||||
Sbjct: 40378102 cctttggagaatg 40378114



 Score =  242 bits (122), Expect = 4e-61
 Identities = 122/122 (100%)
 Strand = Plus / Plus

                                                                            
Query: 872      agtttgcagatgacatgtacaatctttatggtgggaatgcagtggtcgagttagtgacgg 931
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40394047 agtttgcagatgacatgtacaatctttatggtgggaatgcagtggtcgagttagtgacgg 40394106

                                                                            
Query: 932      tcaggtcattcgacacatcccttgtgaggaagacaaggactatccttgaggcaaaacaag 991
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40394107 tcaggtcattcgacacatcccttgtgaggaagacaaggactatccttgaggcaaaacaag 40394166

                  
Query: 992      tg 993
                ||
Sbjct: 40394167 tg 40394168



 Score =  190 bits (96), Expect = 1e-45
 Identities = 96/96 (100%)
 Strand = Plus / Plus

                                                                            
Query: 436      gcagttccttttagtcttgacagcgttgcaaattccattcactccttattttctgaagaa 495
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40383425 gcagttccttttagtcttgacagcgttgcaaattccattcactccttattttctgaagaa 40383484

                                                    
Query: 496      actcctgtggttttgcagttggcacccagtgaggaa 531
                ||||||||||||||||||||||||||||||||||||
Sbjct: 40383485 actcctgtggttttgcagttggcacccagtgaggaa 40383520



 Score =  107 bits (54), Expect = 1e-20
 Identities = 54/54 (100%)
 Strand = Plus / Plus

                                                                      
Query: 670      gtcgacctgctctttctttctgaactgcaggtgctacatgatatttcaagtttg 723
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40384961 gtcgacctgctctttctttctgaactgcaggtgctacatgatatttcaagtttg 40385014


>gb|GL893021.2| Sus scrofa unplaced genomic scaffold ChrUScaf906
          Length = 62095

 Score =  256 bits (129), Expect = 3e-65
 Identities = 132/133 (99%)
 Strand = Plus / Plus

                                                                         
Query: 304   gacctttcttggccgggccttgcagtgggtaacctgttccaccgtcctcgggctaccgtg 363
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53794 gacctttcttggccgggccttgcagtgggtaacctgttccaccgtcctcgggctaccgtg 53853

                                                                         
Query: 364   atggtgatggtgaagggagtggacaagctcgctctacccccaggcagcgtcatttcgtac 423
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 53854 atggtgatggtgaagggagtggacaagctcgctctacccccaggcagcgtcatttcatac 53913

                          
Query: 424   cctttggagaatg 436
             |||||||||||||
Sbjct: 53914 cctttggagaatg 53926



 Score =  190 bits (96), Expect = 1e-45
 Identities = 96/96 (100%)
 Strand = Plus / Plus

                                                                         
Query: 436   gcagttccttttagtcttgacagcgttgcaaattccattcactccttattttctgaagaa 495
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59101 gcagttccttttagtcttgacagcgttgcaaattccattcactccttattttctgaagaa 59160

                                                 
Query: 496   actcctgtggttttgcagttggcacccagtgaggaa 531
             ||||||||||||||||||||||||||||||||||||
Sbjct: 59161 actcctgtggttttgcagttggcacccagtgaggaa 59196



 Score =  131 bits (66), Expect = 1e-27
 Identities = 66/66 (100%)
 Strand = Plus / Plus

                                                                         
Query: 606   actgtttcaagaaaactctattctcagtttacttcccctcaattctctgagtaggaacaa 665
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59506 actgtttcaagaaaactctattctcagtttacttcccctcaattctctgagtaggaacaa 59565

                   
Query: 666   tgaagt 671
             ||||||
Sbjct: 59566 tgaagt 59571



 Score =  107 bits (54), Expect = 1e-20
 Identities = 54/54 (100%)
 Strand = Plus / Plus

                                                                   
Query: 670   gtcgacctgctctttctttctgaactgcaggtgctacatgatatttcaagtttg 723
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60569 gtcgacctgctctttctttctgaactgcaggtgctacatgatatttcaagtttg 60622



 Score =  105 bits (53), Expect = 6e-20
 Identities = 53/53 (100%)
 Strand = Plus / Plus

                                                                  
Query: 532   agagtgtacatggtgggaaaggcaaactcggtttttgaagatctttcggtaac 584
             |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59353 agagtgtacatggtgggaaaggcaaactcggtttttgaagatctttcggtaac 59405


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 37,332,234
Number of extensions: 203
Number of successful extensions: 203
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 202
Number of HSP's successfully gapped: 14
Length of query: 1245
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1224
Effective length of database: 2,808,413,156
Effective search space: 3437497702944
Effective search space used: 3437497702944
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)