Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002376
(1245 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001091491.1| renin receptor [Bos taurus]. 590 e-168
>ref|NP_001091491.1| renin receptor [Bos taurus].
Length = 351
Score = 590 bits (1520), Expect = e-168
Identities = 298/334 (89%), Positives = 308/334 (92%)
Frame = +1
Query: 184 NEFSILRSPGSVVFRDGNWPIPGERIPDVAALSMGFSVKEDLSWPGLAVGNLFHRPRATV 363
NEFSILRSPGSVVFR+GNWPIPGERIPDVAALSMGFSVKEDLSWPGLAVGNLFHRPRATV
Sbjct: 18 NEFSILRSPGSVVFRNGNWPIPGERIPDVAALSMGFSVKEDLSWPGLAVGNLFHRPRATV 77
Query: 364 MVMVKGVDKLALPPGSVISYPLENAVPFSLDSVANSIHSLFSEETPVVLQLAPSEERVYM 543
MVMVKGVDKLALPPGSVISYPLENAVPFSLDSVANSIHSLFSEETPVVLQLAPSEERVYM
Sbjct: 78 MVMVKGVDKLALPPGSVISYPLENAVPFSLDSVANSIHSLFSEETPVVLQLAPSEERVYM 137
Query: 544 VGKANSVFEDLSVTLRQLRSRLFQEXXXXXXXXXXXXXXXXEVDLLFLSELQVLHDISSL 723
VGKANSVFEDLSVTLRQLR+RLFQE EVDLLFLSELQVL DISSL
Sbjct: 138 VGKANSVFEDLSVTLRQLRNRLFQENSVLTSLPLNSLSRNNEVDLLFLSELQVLRDISSL 197
Query: 724 LSRHKHLAKDHSPDLYSLELAGLDEIGKRYGEDSEQFRDASKILVDALQKFADDMYNLYG 903
LSRHKHLAKDHSPDLYSLELAGLDEIGK YGEDSEQFRDASKIL+DALQKFADDMYNLYG
Sbjct: 198 LSRHKHLAKDHSPDLYSLELAGLDEIGKHYGEDSEQFRDASKILIDALQKFADDMYNLYG 257
Query: 904 GNAVVELVTVRSFDTSLVRKTRTILEAKQVKDPPSPYNLAYKYNVDYPVVFNMILWIMIA 1083
GNAVVELVTVRSFDTSLVRKTR ILE KQVKDP + YNLAYKYN +YPVVFN++LWIMI
Sbjct: 258 GNAVVELVTVRSFDTSLVRKTRNILETKQVKDPSTTYNLAYKYNFEYPVVFNLVLWIMIG 317
Query: 1084 LALAVIITSYNIWDMDPGYDSIIYRMTNQKIRMD 1185
LAL +I+T YNIW+MDPGYDSIIYRMTNQKIRMD
Sbjct: 318 LALTLIVTCYNIWNMDPGYDSIIYRMTNQKIRMD 351
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 44,930,682
Number of extensions: 1134222
Number of successful extensions: 3547
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3541
Number of HSP's successfully gapped: 1
Length of query: 415
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 310
Effective length of database: 14,207,134
Effective search space: 4404211540
Effective search space used: 4404211540
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002376
(1245 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
***** No hits found ******
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 46,903,594
Number of extensions: 1165409
Number of successful extensions: 3686
Number of sequences better than 1.0e-05: 0
Number of HSP's gapped: 3666
Number of HSP's successfully gapped: 0
Length of query: 415
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 310
Effective length of database: 15,374,224
Effective search space: 4766009440
Effective search space used: 4766009440
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002376
(1245 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_005756.2| renin receptor [Homo sapiens]. 597 e-171
>ref|NP_005756.2| renin receptor [Homo sapiens].
Length = 350
Score = 597 bits (1540), Expect = e-171
Identities = 303/334 (90%), Positives = 314/334 (94%)
Frame = +1
Query: 184 NEFSILRSPGSVVFRDGNWPIPGERIPDVAALSMGFSVKEDLSWPGLAVGNLFHRPRATV 363
NEFSIL+SPGSVVFR+GNWPIPGERIPDVAALSMGFSVKEDLSWPGLAVGNLFHRPRATV
Sbjct: 17 NEFSILKSPGSVVFRNGNWPIPGERIPDVAALSMGFSVKEDLSWPGLAVGNLFHRPRATV 76
Query: 364 MVMVKGVDKLALPPGSVISYPLENAVPFSLDSVANSIHSLFSEETPVVLQLAPSEERVYM 543
MVMVKGV+KLALPPGSVISYPLENAVPFSLDSVANSIHSLFSEETPVVLQLAPSEERVYM
Sbjct: 77 MVMVKGVNKLALPPGSVISYPLENAVPFSLDSVANSIHSLFSEETPVVLQLAPSEERVYM 136
Query: 544 VGKANSVFEDLSVTLRQLRSRLFQEXXXXXXXXXXXXXXXXEVDLLFLSELQVLHDISSL 723
VGKANSVFEDLSVTLRQLR+RLFQE EVDLLFLSELQVLHDISSL
Sbjct: 137 VGKANSVFEDLSVTLRQLRNRLFQENSVLSSLPLNSLSRNNEVDLLFLSELQVLHDISSL 196
Query: 724 LSRHKHLAKDHSPDLYSLELAGLDEIGKRYGEDSEQFRDASKILVDALQKFADDMYNLYG 903
LSRHKHLAKDHSPDLYSLELAGLDEIGKRYGEDSEQFRDASKILVDALQKFADDMY+LYG
Sbjct: 197 LSRHKHLAKDHSPDLYSLELAGLDEIGKRYGEDSEQFRDASKILVDALQKFADDMYSLYG 256
Query: 904 GNAVVELVTVRSFDTSLVRKTRTILEAKQVKDPPSPYNLAYKYNVDYPVVFNMILWIMIA 1083
GNAVVELVTV+SFDTSL+RKTRTILEAKQ K+P SPYNLAYKYN +Y VVFNM+LWIMIA
Sbjct: 257 GNAVVELVTVKSFDTSLIRKTRTILEAKQAKNPASPYNLAYKYNFEYSVVFNMVLWIMIA 316
Query: 1084 LALAVIITSYNIWDMDPGYDSIIYRMTNQKIRMD 1185
LALAVIITSYNIW+MDPGYDSIIYRMTNQKIRMD
Sbjct: 317 LALAVIITSYNIWNMDPGYDSIIYRMTNQKIRMD 350
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 46,184,728
Number of extensions: 1154410
Number of successful extensions: 3643
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3639
Number of HSP's successfully gapped: 1
Length of query: 415
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 310
Effective length of database: 14,835,944
Effective search space: 4599142640
Effective search space used: 4599142640
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002376
(1245 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_081715.1| renin receptor precursor [Mus musculus]. 581 e-166
>ref|NP_081715.1| renin receptor precursor [Mus musculus].
Length = 350
Score = 581 bits (1498), Expect = e-166
Identities = 296/334 (88%), Positives = 312/334 (93%)
Frame = +1
Query: 184 NEFSILRSPGSVVFRDGNWPIPGERIPDVAALSMGFSVKEDLSWPGLAVGNLFHRPRATV 363
NEFSILRSPGSVVFR+GNWPIPG+RIPDVAALSMGFSVKEDLSWPGLAVGNLFHRPRAT+
Sbjct: 18 NEFSILRSPGSVVFRNGNWPIPGDRIPDVAALSMGFSVKEDLSWPGLAVGNLFHRPRATI 77
Query: 364 MVMVKGVDKLALPPGSVISYPLENAVPFSLDSVANSIHSLFSEETPVVLQLAPSEERVYM 543
MVMVKGVDKLALP GSVISYPLENAVPFSLDSVANSIHSLFSEETPVVLQLAPSEERVYM
Sbjct: 78 MVMVKGVDKLALPAGSVISYPLENAVPFSLDSVANSIHSLFSEETPVVLQLAPSEERVYM 137
Query: 544 VGKANSVFEDLSVTLRQLRSRLFQEXXXXXXXXXXXXXXXXEVDLLFLSELQVLHDISSL 723
VGKANSVFEDLSVTLRQLR+RLFQE EVDLLFLSELQVLHDISSL
Sbjct: 138 VGKANSVFEDLSVTLRQLRNRLFQENSLLNSLPLNSLSRNNEVDLLFLSELQVLHDISSL 197
Query: 724 LSRHKHLAKDHSPDLYSLELAGLDEIGKRYGEDSEQFRDASKILVDALQKFADDMYNLYG 903
LSRHKHLAKDHSPDLYSLELAGLDE+GKRYGEDSEQFRDASKILVDALQKFADDMY+LYG
Sbjct: 198 LSRHKHLAKDHSPDLYSLELAGLDELGKRYGEDSEQFRDASKILVDALQKFADDMYSLYG 257
Query: 904 GNAVVELVTVRSFDTSLVRKTRTILEAKQVKDPPSPYNLAYKYNVDYPVVFNMILWIMIA 1083
GNAVVELVTV+SFDTSLVRK+RTILEAKQ ++ SPYNLAYKYN++Y VVFN++LWIMI
Sbjct: 258 GNAVVELVTVKSFDTSLVRKSRTILEAKQ-ENTQSPYNLAYKYNLEYSVVFNLVLWIMIG 316
Query: 1084 LALAVIITSYNIWDMDPGYDSIIYRMTNQKIRMD 1185
LALAVIITSYNIW+MDPGYDSIIYRMTNQKIR+D
Sbjct: 317 LALAVIITSYNIWNMDPGYDSIIYRMTNQKIRID 350
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 39,441,743
Number of extensions: 989144
Number of successful extensions: 3044
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3042
Number of HSP's successfully gapped: 1
Length of query: 415
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 311
Effective length of database: 12,493,815
Effective search space: 3885576465
Effective search space used: 3885576465
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002376
(1245 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003135070.1| PREDICTED: renin receptor-like [Sus scrofa]. 620 e-178
Alignment gi|XP_003360317.1| PREDICTED: hypothetical protein LOC100627392... 316 2e-86
Alignment gi|XP_003360905.1| PREDICTED: renin receptor-like, partial [Sus... 300 9e-82
>ref|XP_003135070.1| PREDICTED: renin receptor-like [Sus scrofa].
Length = 351
Score = 620 bits (1600), Expect = e-178
Identities = 317/334 (94%), Positives = 318/334 (95%)
Frame = +1
Query: 184 NEFSILRSPGSVVFRDGNWPIPGERIPDVAALSMGFSVKEDLSWPGLAVGNLFHRPRATV 363
NEFSILRSPGSVVFRDGNWPIPGERIPDVAALSMGFSVKEDLSWPGLAVGNLFHRPRATV
Sbjct: 18 NEFSILRSPGSVVFRDGNWPIPGERIPDVAALSMGFSVKEDLSWPGLAVGNLFHRPRATV 77
Query: 364 MVMVKGVDKLALPPGSVISYPLENAVPFSLDSVANSIHSLFSEETPVVLQLAPSEERVYM 543
MVMVKGVDKLALPPGSVISYPLENAVPFSLDSVANSIHSLFSEETPVVLQLAPSEERVYM
Sbjct: 78 MVMVKGVDKLALPPGSVISYPLENAVPFSLDSVANSIHSLFSEETPVVLQLAPSEERVYM 137
Query: 544 VGKANSVFEDLSVTLRQLRSRLFQEXXXXXXXXXXXXXXXXEVDLLFLSELQVLHDISSL 723
VGKANSVFEDLSVTLRQLRSRLFQE EVDLLFLSELQVLHDISSL
Sbjct: 138 VGKANSVFEDLSVTLRQLRSRLFQENSILSLLPLNSLSRNNEVDLLFLSELQVLHDISSL 197
Query: 724 LSRHKHLAKDHSPDLYSLELAGLDEIGKRYGEDSEQFRDASKILVDALQKFADDMYNLYG 903
LSRHKHLAKDHSPDLYSLELAGLDEIGKRYGEDSEQFRDASKILVDALQKFADDMYNLYG
Sbjct: 198 LSRHKHLAKDHSPDLYSLELAGLDEIGKRYGEDSEQFRDASKILVDALQKFADDMYNLYG 257
Query: 904 GNAVVELVTVRSFDTSLVRKTRTILEAKQVKDPPSPYNLAYKYNVDYPVVFNMILWIMIA 1083
GNAVVELVTVRSFDTSLVRKTRTILEAKQVKDPPSPYNLAYKYNVDYPVVFNMILWIMIA
Sbjct: 258 GNAVVELVTVRSFDTSLVRKTRTILEAKQVKDPPSPYNLAYKYNVDYPVVFNMILWIMIA 317
Query: 1084 LALAVIITSYNIWDMDPGYDSIIYRMTNQKIRMD 1185
LALAVIITSYNIW+MDPGYDSIIYRMTNQKIRMD
Sbjct: 318 LALAVIITSYNIWNMDPGYDSIIYRMTNQKIRMD 351
>ref|XP_003360317.1| PREDICTED: hypothetical protein LOC100627392 [Sus scrofa].
Length = 515
Score = 316 bits (809), Expect = 2e-86
Identities = 164/181 (90%), Positives = 165/181 (91%)
Frame = +1
Query: 184 NEFSILRSPGSVVFRDGNWPIPGERIPDVAALSMGFSVKEDLSWPGLAVGNLFHRPRATV 363
NEFSILRSPGSVVFRDGNWPIPGERIPDVAALSMGFSVKEDLSWPGLAVGNLFHRPRATV
Sbjct: 295 NEFSILRSPGSVVFRDGNWPIPGERIPDVAALSMGFSVKEDLSWPGLAVGNLFHRPRATV 354
Query: 364 MVMVKGVDKLALPPGSVISYPLENAVPFSLDSVANSIHSLFSEETPVVLQLAPSEERVYM 543
MVMVKGVDKLALPPGSVISYPLENAVPFSLDSVANSIHSLFSEETPVVLQLAPSEERVYM
Sbjct: 355 MVMVKGVDKLALPPGSVISYPLENAVPFSLDSVANSIHSLFSEETPVVLQLAPSEERVYM 414
Query: 544 VGKANSVFEDLSVTLRQLRSRLFQEXXXXXXXXXXXXXXXXEVDLLFLSELQVLHDISSL 723
VGKANSVFEDLSVTLRQLRSRLFQE EVDLLFLSELQVLHDISSL
Sbjct: 415 VGKANSVFEDLSVTLRQLRSRLFQENSILSLLPLNSLSRNNEVDLLFLSELQVLHDISSL 474
Query: 724 L 726
+
Sbjct: 475 V 475
>ref|XP_003360905.1| PREDICTED: renin receptor-like, partial [Sus scrofa].
Length = 279
Score = 300 bits (769), Expect = 9e-82
Identities = 157/180 (87%), Positives = 157/180 (87%)
Frame = +1
Query: 184 NEFSILRSPGSVVFRDGNWPIPGERIPDVAALSMGFSVKEDLSWPGLAVGNLFHRPRATV 363
NEFSILRSPGSVVFRDGNWPIPGERIPDVAALSMGFSVKEDLSWPGLAVGNLFHRPRATV
Sbjct: 100 NEFSILRSPGSVVFRDGNWPIPGERIPDVAALSMGFSVKEDLSWPGLAVGNLFHRPRATV 159
Query: 364 MVMVKGVDKLALPPGSVISYPLENAVPFSLDSVANSIHSLFSEETPVVLQLAPSEERVYM 543
MVMVKGVDKLALPPGSVISYPLENAVPFSLDSVANSIHSLFSEETPVVLQLAPSEERVYM
Sbjct: 160 MVMVKGVDKLALPPGSVISYPLENAVPFSLDSVANSIHSLFSEETPVVLQLAPSEERVYM 219
Query: 544 VGKANSVFEDLSVTLRQLRSRLFQEXXXXXXXXXXXXXXXXEVDLLFLSELQVLHDISSL 723
VGKANSVFEDLSVT LFQE EVDLLFLSELQVLHDISSL
Sbjct: 220 VGKANSVFEDLSVTXXXXXXXLFQENSILSLLPLNSLSRNNEVDLLFLSELQVLHDISSL 279
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 28,840,996
Number of extensions: 721391
Number of successful extensions: 2198
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2195
Number of HSP's successfully gapped: 3
Length of query: 415
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 314
Effective length of database: 8,829,335
Effective search space: 2772411190
Effective search space used: 2772411190
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002376
(1245 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_ChrX 454 e-125
gb|GL893021.2| Sus scrofa unplaced genomic scaffold ChrUScaf906 256 3e-65
>Sscrofa_ChrX
|| Length = 144288218
Score = 454 bits (229), Expect = e-125
Identities = 249/253 (98%), Gaps = 2/253 (0%)
Strand = Plus / Plus
Query: 993 gaaggacccaccaagtccctataaccttgcatacaagtataatgttgactatccagtggt 1052
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40397373 gaaggacccaccaagtccctataaccttgcatacaagtataatgttgactatccagtggt 40397432
Query: 1053 tttcaacatgatactttggataatgattgccttggccttggctgtgataatcacctctta 1112
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40397433 tttcaacatgatactttggataatgattgccttggccttggctgtgataatcacctctta 40397492
Query: 1113 caatatttgggacatggatcctggatatgacagcatcatttataggatgacaaaccagaa 1172
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40397493 caatatttggaacatggatcctggatatgacagcatcatttataggatgacaaaccagaa 40397552
Query: 1173 gattcgaatggactgaaactttccttatgccaaacttaaaacagaggtttggaaattggc 1232
||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 40397553 gattcgaatggactg-aactttccttatgccaaacttagaacagaggtttggaaattgg- 40397610
Query: 1233 ctgttttgttaaa 1245
|||||||||||||
Sbjct: 40397611 ctgttttgttaaa 40397623
Score = 347 bits (175), Expect = 9e-93
Identities = 175/175 (100%)
Strand = Plus / Plus
Query: 1 cgacgacggggagggctcaaggagtcggggcgagctagagctcgtcaccccctcgtgctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40369354 cgacgacggggagggctcaaggagtcggggcgagctagagctcgtcaccccctcgtgctg 40369413
Query: 61 tggtggtcgctcgcgttccgccggcccgttcgtgtgtgtgttgtcctgcacagctgcggc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40369414 tggtggtcgctcgcgttccgccggcccgttcgtgtgtgtgttgtcctgcacagctgcggc 40369473
Query: 121 cgccgcggaaccatggctgtgctcgtcgccctcttgtccttggtggtggcgggtg 175
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40369474 cgccgcggaaccatggctgtgctcgtcgccctcttgtccttggtggtggcgggtg 40369528
Score = 299 bits (151), Expect = 2e-78
Identities = 151/151 (100%)
Strand = Plus / Plus
Query: 723 gttgtctcgacacaagcatctagccaaggatcattctcctgatttatactcactggagct 782
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40393399 gttgtctcgacacaagcatctagccaaggatcattctcctgatttatactcactggagct 40393458
Query: 783 ggcaggtttggatgaaattgggaaacgttacggggaagactctgaacaatttagagatgc 842
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40393459 ggcaggtttggatgaaattgggaaacgttacggggaagactctgaacaatttagagatgc 40393518
Query: 843 ttctaagatccttgtcgatgctctgcaaaag 873
|||||||||||||||||||||||||||||||
Sbjct: 40393519 ttctaagatccttgtcgatgctctgcaaaag 40393549
Score = 278 bits (140), Expect = 7e-72
Identities = 140/140 (100%)
Strand = Plus / Plus
Query: 532 agagtgtacatggtgggaaaggcaaactcggtttttgaagatctttcggtaacacttaga 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40383677 agagtgtacatggtgggaaaggcaaactcggtttttgaagatctttcggtaacacttaga 40383736
Query: 592 caactccgcagtcgactgtttcaagaaaactctattctcagtttacttcccctcaattct 651
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40383737 caactccgcagtcgactgtttcaagaaaactctattctcagtttacttcccctcaattct 40383796
Query: 652 ctgagtaggaacaatgaagt 671
||||||||||||||||||||
Sbjct: 40383797 ctgagtaggaacaatgaagt 40383816
Score = 264 bits (133), Expect = 1e-67
Identities = 133/133 (100%)
Strand = Plus / Plus
Query: 172 ggtgtcttagggaatgagtttagcatattaagatcaccagggtctgttgttttccgggat 231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40375708 ggtgtcttagggaatgagtttagcatattaagatcaccagggtctgttgttttccgggat 40375767
Query: 232 ggaaattggcctataccaggagagcgaatcccagacgtggctgcattatccatgggcttc 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40375768 ggaaattggcctataccaggagagcgaatcccagacgtggctgcattatccatgggcttc 40375827
Query: 292 tctgtcaaagaag 304
|||||||||||||
Sbjct: 40375828 tctgtcaaagaag 40375840
Score = 256 bits (129), Expect = 3e-65
Identities = 132/133 (99%)
Strand = Plus / Plus
Query: 304 gacctttcttggccgggccttgcagtgggtaacctgttccaccgtcctcgggctaccgtg 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40377982 gacctttcttggccgggccttgcagtgggtaacctgttccaccgtcctcgggctaccgtg 40378041
Query: 364 atggtgatggtgaagggagtggacaagctcgctctacccccaggcagcgtcatttcgtac 423
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 40378042 atggtgatggtgaagggagtggacaagctcgctctacccccaggcagcgtcatttcatac 40378101
Query: 424 cctttggagaatg 436
|||||||||||||
Sbjct: 40378102 cctttggagaatg 40378114
Score = 242 bits (122), Expect = 4e-61
Identities = 122/122 (100%)
Strand = Plus / Plus
Query: 872 agtttgcagatgacatgtacaatctttatggtgggaatgcagtggtcgagttagtgacgg 931
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40394047 agtttgcagatgacatgtacaatctttatggtgggaatgcagtggtcgagttagtgacgg 40394106
Query: 932 tcaggtcattcgacacatcccttgtgaggaagacaaggactatccttgaggcaaaacaag 991
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40394107 tcaggtcattcgacacatcccttgtgaggaagacaaggactatccttgaggcaaaacaag 40394166
Query: 992 tg 993
||
Sbjct: 40394167 tg 40394168
Score = 190 bits (96), Expect = 1e-45
Identities = 96/96 (100%)
Strand = Plus / Plus
Query: 436 gcagttccttttagtcttgacagcgttgcaaattccattcactccttattttctgaagaa 495
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40383425 gcagttccttttagtcttgacagcgttgcaaattccattcactccttattttctgaagaa 40383484
Query: 496 actcctgtggttttgcagttggcacccagtgaggaa 531
||||||||||||||||||||||||||||||||||||
Sbjct: 40383485 actcctgtggttttgcagttggcacccagtgaggaa 40383520
Score = 107 bits (54), Expect = 1e-20
Identities = 54/54 (100%)
Strand = Plus / Plus
Query: 670 gtcgacctgctctttctttctgaactgcaggtgctacatgatatttcaagtttg 723
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40384961 gtcgacctgctctttctttctgaactgcaggtgctacatgatatttcaagtttg 40385014
>gb|GL893021.2| Sus scrofa unplaced genomic scaffold ChrUScaf906
Length = 62095
Score = 256 bits (129), Expect = 3e-65
Identities = 132/133 (99%)
Strand = Plus / Plus
Query: 304 gacctttcttggccgggccttgcagtgggtaacctgttccaccgtcctcgggctaccgtg 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53794 gacctttcttggccgggccttgcagtgggtaacctgttccaccgtcctcgggctaccgtg 53853
Query: 364 atggtgatggtgaagggagtggacaagctcgctctacccccaggcagcgtcatttcgtac 423
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 53854 atggtgatggtgaagggagtggacaagctcgctctacccccaggcagcgtcatttcatac 53913
Query: 424 cctttggagaatg 436
|||||||||||||
Sbjct: 53914 cctttggagaatg 53926
Score = 190 bits (96), Expect = 1e-45
Identities = 96/96 (100%)
Strand = Plus / Plus
Query: 436 gcagttccttttagtcttgacagcgttgcaaattccattcactccttattttctgaagaa 495
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59101 gcagttccttttagtcttgacagcgttgcaaattccattcactccttattttctgaagaa 59160
Query: 496 actcctgtggttttgcagttggcacccagtgaggaa 531
||||||||||||||||||||||||||||||||||||
Sbjct: 59161 actcctgtggttttgcagttggcacccagtgaggaa 59196
Score = 131 bits (66), Expect = 1e-27
Identities = 66/66 (100%)
Strand = Plus / Plus
Query: 606 actgtttcaagaaaactctattctcagtttacttcccctcaattctctgagtaggaacaa 665
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59506 actgtttcaagaaaactctattctcagtttacttcccctcaattctctgagtaggaacaa 59565
Query: 666 tgaagt 671
||||||
Sbjct: 59566 tgaagt 59571
Score = 107 bits (54), Expect = 1e-20
Identities = 54/54 (100%)
Strand = Plus / Plus
Query: 670 gtcgacctgctctttctttctgaactgcaggtgctacatgatatttcaagtttg 723
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60569 gtcgacctgctctttctttctgaactgcaggtgctacatgatatttcaagtttg 60622
Score = 105 bits (53), Expect = 6e-20
Identities = 53/53 (100%)
Strand = Plus / Plus
Query: 532 agagtgtacatggtgggaaaggcaaactcggtttttgaagatctttcggtaac 584
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59353 agagtgtacatggtgggaaaggcaaactcggtttttgaagatctttcggtaac 59405
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 37,332,234
Number of extensions: 203
Number of successful extensions: 203
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 202
Number of HSP's successfully gapped: 14
Length of query: 1245
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1224
Effective length of database: 2,808,413,156
Effective search space: 3437497702944
Effective search space used: 3437497702944
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)