Animal-Genome cDNA 20110601C-002384


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002384
         (948 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001071609.1| interferon induced transmembrane family memb...   207   1e-53
Alignment   gi|NP_001071610.1| interferon-induced transmembrane protein 1 (...   205   5e-53
Alignment   gi|XP_001253014.1| PREDICTED: interferon-induced transmembrane ...   201   8e-52
Alignment   gi|NP_863657.1| interferon-induced transmembrane protein 3 (1-8...   201   1e-51
Alignment   gi|NP_001071522.1| interferon induced transmembrane protein 2 (...   199   2e-51
Alignment   gi|XP_002697369.1| PREDICTED: interferon induced transmembrane ...   197   9e-51
Alignment   gi|XP_598998.1| PREDICTED: interferon induced transmembrane pro...   197   9e-51
Alignment   gi|XP_869835.2| PREDICTED: interferon induced transmembrane pro...   144   9e-35
Alignment   gi|XP_002684045.1| PREDICTED: interferon-induced transmembrane ...   141   7e-34
Alignment   gi|XP_002707847.1| PREDICTED: inteferon-induced membrane protei...   140   2e-33

>ref|NP_001071609.1| interferon induced transmembrane family member [Bos taurus].
          Length = 146

 Score =  207 bits (527), Expect = 1e-53
 Identities = 102/145 (70%), Positives = 118/145 (81%), Gaps = 1/145 (0%)
 Frame = +3

Query: 72  MNCASQPFFTGAHGG-PPTYEMLKEEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVW 248
           MN  SQP FTGAHG  PP YE+LKEEHEVAVLGAPQ+ AP+ TTVINIRS+T+VPDH+VW
Sbjct: 1   MNRTSQPLFTGAHGAVPPAYEVLKEEHEVAVLGAPQSQAPLTTTVINIRSDTAVPDHIVW 60

Query: 249 SLFNTLFMNWCCLGFVAFAYSVKARDRKMVGDIIGAQSYASTAKCLNIWALVLGIFLTIG 428
           SLFNT+FMNWCCLGFVAFAYSVK+RDRKMVGDI GAQSYASTAKCLNI +LVLGI LT+ 
Sbjct: 61  SLFNTIFMNWCCLGFVAFAYSVKSRDRKMVGDITGAQSYASTAKCLNICSLVLGILLTVV 120

Query: 429 AVALLVFACIAVYEMALQHAKSNRG 503
            + L+    + + + A+     N G
Sbjct: 121 LIVLVSTGSLMIVQ-AVSELMQNYG 144


>ref|NP_001071610.1| interferon-induced transmembrane protein 1 (9-27) isoform 1 [Bos
           taurus].
          Length = 124

 Score =  205 bits (521), Expect = 5e-53
 Identities = 95/117 (81%), Positives = 109/117 (93%)
 Frame = +3

Query: 132 MLKEEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWSLFNTLFMNWCCLGFVAFAYS 311
           M+KEEHEVAVLGAPQ+ AP+ TTVINIRS+T+VPDH+VWSLFNT+F+NWCCLGFVAFAYS
Sbjct: 1   MIKEEHEVAVLGAPQSQAPLTTTVINIRSDTAVPDHIVWSLFNTIFLNWCCLGFVAFAYS 60

Query: 312 VKARDRKMVGDIIGAQSYASTAKCLNIWALVLGIFLTIGAVALLVFACIAVYEMALQ 482
           VK+RDRKMVGDI GAQSYASTAKCLNIWALVLGIFLTIG++ LL+F  +A YE AL+
Sbjct: 61  VKSRDRKMVGDITGAQSYASTAKCLNIWALVLGIFLTIGSIVLLIFVYMAAYETALR 117


>ref|XP_001253014.1| PREDICTED: interferon-induced transmembrane protein 3 (1-8U)-like
           [Bos taurus].
          Length = 146

 Score =  201 bits (511), Expect = 8e-52
 Identities = 100/145 (68%), Positives = 116/145 (80%), Gaps = 1/145 (0%)
 Frame = +3

Query: 72  MNCASQPFFTGAHGG-PPTYEMLKEEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVW 248
           MN  SQ   TGAHG  PP YE+LKEEHEVAVLGAPQ+ AP+ TTVINIRS+T+VPDH+VW
Sbjct: 1   MNRTSQLLLTGAHGAVPPAYEVLKEEHEVAVLGAPQSQAPLTTTVINIRSDTAVPDHIVW 60

Query: 249 SLFNTLFMNWCCLGFVAFAYSVKARDRKMVGDIIGAQSYASTAKCLNIWALVLGIFLTIG 428
           SLFNT+FMNWCCLGFVAFAYSVK+RDRKMVGDI GAQSYASTAKCLNI +LVLGI LT+ 
Sbjct: 61  SLFNTIFMNWCCLGFVAFAYSVKSRDRKMVGDITGAQSYASTAKCLNICSLVLGILLTVV 120

Query: 429 AVALLVFACIAVYEMALQHAKSNRG 503
            + L+    + + + A+     N G
Sbjct: 121 LIVLVSTGSLMIVQ-AVSELMQNYG 144


>ref|NP_863657.1| interferon-induced transmembrane protein 3 (1-8U) [Bos taurus].
          Length = 146

 Score =  201 bits (510), Expect = 1e-51
 Identities = 97/125 (77%), Positives = 109/125 (87%), Gaps = 1/125 (0%)
 Frame = +3

Query: 72  MNCASQPFFTGAHGG-PPTYEMLKEEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVW 248
           MN  SQ   TGAHG  PP YE+LKEEHEVAVLGAPQ+ AP+ TTVINIRS+T+VPDH+VW
Sbjct: 1   MNRTSQLLLTGAHGAVPPAYEVLKEEHEVAVLGAPQSQAPLTTTVINIRSDTAVPDHIVW 60

Query: 249 SLFNTLFMNWCCLGFVAFAYSVKARDRKMVGDIIGAQSYASTAKCLNIWALVLGIFLTIG 428
           SLFNT+FMNWCCLGFVAFAYSVK+RDRKMVGDI GAQSYASTAKCLNI +LVLGI LT+ 
Sbjct: 61  SLFNTIFMNWCCLGFVAFAYSVKSRDRKMVGDITGAQSYASTAKCLNICSLVLGILLTVV 120

Query: 429 AVALL 443
            + L+
Sbjct: 121 LIVLV 125


>ref|NP_001071522.1| interferon induced transmembrane protein 2 (1-8D) [Bos taurus].
          Length = 124

 Score =  199 bits (507), Expect = 2e-51
 Identities = 95/117 (81%), Positives = 106/117 (90%)
 Frame = +3

Query: 132 MLKEEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWSLFNTLFMNWCCLGFVAFAYS 311
           MLKEE+EVAVLGAPQ+ APV TTVINI  E SVPDH+VWSLFNT+F+NWCCLGFVAFAYS
Sbjct: 1   MLKEENEVAVLGAPQSQAPVTTTVINIPRENSVPDHIVWSLFNTVFLNWCCLGFVAFAYS 60

Query: 312 VKARDRKMVGDIIGAQSYASTAKCLNIWALVLGIFLTIGAVALLVFACIAVYEMALQ 482
           VK+RDRKMVGDI GAQSYASTAKCLNIWALVLGIFLTIG++ LL+F  +A YE AL+
Sbjct: 61  VKSRDRKMVGDITGAQSYASTAKCLNIWALVLGIFLTIGSIVLLIFVYMAAYETALR 117


>ref|XP_002697369.1| PREDICTED: interferon induced transmembrane protein 3-like [Bos
           taurus].
          Length = 145

 Score =  197 bits (502), Expect = 9e-51
 Identities = 96/132 (72%), Positives = 109/132 (82%), Gaps = 1/132 (0%)
 Frame = +3

Query: 72  MNCASQPFFTGAHGG-PPTYEMLKEEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVW 248
           MNC SQP FTGAHG  PP YE+LKEEHEVAVLG PQ+ APV TTVINI SETSVP+H+VW
Sbjct: 1   MNCTSQPLFTGAHGVVPPAYEVLKEEHEVAVLGVPQSQAPVTTTVINICSETSVPNHIVW 60

Query: 249 SLFNTLFMNWCCLGFVAFAYSVKARDRKMVGDIIGAQSYASTAKCLNIWALVLGIFLTIG 428
            LFNT+FMNWCCLGFVAFAYSV++RDRKMVGDI GAQ Y STAKCLNI ALVLG+ L I 
Sbjct: 61  FLFNTIFMNWCCLGFVAFAYSVESRDRKMVGDITGAQRYTSTAKCLNICALVLGLLLIIV 120

Query: 429 AVALLVFACIAV 464
            + + + + + V
Sbjct: 121 LIIMSIGSLMIV 132


>ref|XP_598998.1| PREDICTED: interferon induced transmembrane protein 3-like [Bos
           taurus].
          Length = 145

 Score =  197 bits (502), Expect = 9e-51
 Identities = 96/132 (72%), Positives = 109/132 (82%), Gaps = 1/132 (0%)
 Frame = +3

Query: 72  MNCASQPFFTGAHGG-PPTYEMLKEEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVW 248
           MNC SQP FTGAHG  PP YE+LKEEHEVAVLG PQ+ APV TTVINI SETSVP+H+VW
Sbjct: 1   MNCTSQPLFTGAHGVVPPAYEVLKEEHEVAVLGVPQSQAPVTTTVINICSETSVPNHIVW 60

Query: 249 SLFNTLFMNWCCLGFVAFAYSVKARDRKMVGDIIGAQSYASTAKCLNIWALVLGIFLTIG 428
            LFNT+FMNWCCLGFVAFAYSV++RDRKMVGDI GAQ Y STAKCLNI ALVLG+ L I 
Sbjct: 61  FLFNTIFMNWCCLGFVAFAYSVESRDRKMVGDITGAQRYTSTAKCLNICALVLGLLLIIV 120

Query: 429 AVALLVFACIAV 464
            + + + + + V
Sbjct: 121 LIIMSIGSLMIV 132


>ref|XP_869835.2| PREDICTED: interferon induced transmembrane protein 2 (1-8D)-like
           [Bos taurus].
          Length = 238

 Score =  144 bits (364), Expect = 9e-35
 Identities = 69/108 (63%), Positives = 83/108 (76%)
 Frame = +3

Query: 132 MLKEEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWSLFNTLFMNWCCLGFVAFAYS 311
           M   E EVAV+G P  SAP+   VINI++E    DH+VWSLFNTLFMN CCLGFVAF YS
Sbjct: 1   MFSGEQEVAVMGGPAGSAPMKNAVINIQTENPGRDHIVWSLFNTLFMNICCLGFVAFDYS 60

Query: 312 VKARDRKMVGDIIGAQSYASTAKCLNIWALVLGIFLTIGAVALLVFAC 455
           V+++D+KMVGDI GAQS+ASTAKCLN+WALVLG+ LTI  + +    C
Sbjct: 61  VESKDQKMVGDITGAQSHASTAKCLNVWALVLGLLLTITFITVFGTGC 108


>ref|XP_002684045.1| PREDICTED: interferon-induced transmembrane protein 3 (1-8U)-like
           [Bos taurus].
          Length = 96

 Score =  141 bits (356), Expect = 7e-34
 Identities = 66/83 (79%), Positives = 73/83 (87%), Gaps = 1/83 (1%)
 Frame = +3

Query: 72  MNCASQPFFTGAHGG-PPTYEMLKEEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVW 248
           MN  SQ   TGAHG  PP YE+LKEEHEVAVLGAPQ+ AP+ TTVINIRS+T+VPDH+VW
Sbjct: 1   MNRTSQLLLTGAHGAVPPAYEVLKEEHEVAVLGAPQSQAPLTTTVINIRSDTAVPDHIVW 60

Query: 249 SLFNTLFMNWCCLGFVAFAYSVK 317
           SLFNT+FMNWCCLGFVAFAYSVK
Sbjct: 61  SLFNTIFMNWCCLGFVAFAYSVK 83


>ref|XP_002707847.1| PREDICTED: inteferon-induced membrane protein Leu-13/9-27-like [Bos
           taurus].
          Length = 214

 Score =  140 bits (353), Expect = 2e-33
 Identities = 68/108 (62%), Positives = 81/108 (75%)
 Frame = +3

Query: 132 MLKEEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWSLFNTLFMNWCCLGFVAFAYS 311
           M   E EVAV G  Q   P+   VINI++E    DH+VWSLFNTLFMN CCLGFVAFAYS
Sbjct: 1   MFSGEQEVAVTGDLQARXPMKNAVINIQTENPGRDHIVWSLFNTLFMNICCLGFVAFAYS 60

Query: 312 VKARDRKMVGDIIGAQSYASTAKCLNIWALVLGIFLTIGAVALLVFAC 455
           V+++D+KMVGDI GAQS+ASTAKCLN+WALVLG+ LTI  + +    C
Sbjct: 61  VESKDQKMVGDITGAQSHASTAKCLNVWALVLGLLLTITFITVFGTGC 108


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 43,920,728
Number of extensions: 1533886
Number of successful extensions: 6396
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 6352
Number of HSP's successfully gapped: 15
Length of query: 316
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 214
Effective length of database: 14,306,398
Effective search space: 3061569172
Effective search space used: 3061569172
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002384
         (948 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_533144.2| PREDICTED: similar to Interferon-induced transm...   170   2e-42
Alignment   gi|XP_540516.1| PREDICTED: similar to Interferon-induced transm...   159   3e-39
Alignment   gi|XP_540515.2| PREDICTED: similar to Interferon-induced transm...   152   6e-37
Alignment   gi|XP_848464.1| PREDICTED: similar to IFITM5 [Canis familiaris].     127   2e-29
Alignment   gi|XP_848556.1| PREDICTED: similar to interferon induced transm...    95   8e-20
Alignment   gi|XP_854310.1| PREDICTED: similar to Interferon-inducible prot...    77   2e-14
Alignment   gi|XP_536539.2| PREDICTED: similar to olfactory receptor 973 [C...    72   6e-13

>ref|XP_533144.2| PREDICTED: similar to Interferon-induced transmembrane protein 3
           (Interferon-inducible protein 1-8U) [Canis familiaris].
          Length = 219

 Score =  170 bits (431), Expect = 2e-42
 Identities = 94/162 (58%), Positives = 112/162 (69%)
 Frame = +3

Query: 21  QSTPAHPLSRPQLLLGTMNCASQPFFTGAHGGPPTYEMLKEEHEVAVLGAPQTSAPVATT 200
           Q TP+ P SRP  L  T   A   FF G H      EM+  +++V V GAP ++AP  TT
Sbjct: 62  QPTPSLPSSRPHQLWATQPPAL--FFPG-HACASPREMM--QNKVDVRGAPLSTAPATTT 116

Query: 201 VINIRSETSVPDHVVWSLFNTLFMNWCCLGFVAFAYSVKARDRKMVGDIIGAQSYASTAK 380
           VIN+  ET VPDHVVWSLFNT+F+NW CLGFVAF YSVKARDRKMVGD+ GAQS+ASTA+
Sbjct: 117 VINVPVETVVPDHVVWSLFNTIFLNWFCLGFVAFVYSVKARDRKMVGDLTGAQSFASTAR 176

Query: 381 CLNIWALVLGIFLTIGAVALLVFACIAVYEMALQHAKSNRGY 506
           CLNIWALVLG+ LTI ++ LL  A  A Y   LQ  + +  Y
Sbjct: 177 CLNIWALVLGLLLTIISIVLLGMAYAAAYGALLQAMQESGRY 218


>ref|XP_540516.1| PREDICTED: similar to Interferon-induced transmembrane protein 1
           (Interferon-induced protein 17) (Interferon-inducible
           protein 9-27) (Leu-13 antigen) (CD225 antigen) [Canis
           familiaris].
          Length = 126

 Score =  159 bits (403), Expect = 3e-39
 Identities = 80/125 (64%), Positives = 96/125 (76%)
 Frame = +3

Query: 132 MLKEEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWSLFNTLFMNWCCLGFVAFAYS 311
           M +++++V   GAPQ+  PV TTVINIRS+T VPDH+VWSLFNT+FMNWCCLG VAFAYS
Sbjct: 1   MDQDQYKVPETGAPQSMVPVTTTVINIRSDTVVPDHIVWSLFNTVFMNWCCLGIVAFAYS 60

Query: 312 VKARDRKMVGDIIGAQSYASTAKCLNIWALVLGIFLTIGAVALLVFACIAVYEMALQHAK 491
           VKARDRKMVGD+ GAQS+ASTA+CLNI ALV+GI L I ++ LL  A  A Y   LQ  +
Sbjct: 61  VKARDRKMVGDLTGAQSFASTARCLNISALVVGIILGIISIVLLRIAFGAAYWALLQVMQ 120

Query: 492 SNRGY 506
               Y
Sbjct: 121 ERSRY 125


>ref|XP_540515.2| PREDICTED: similar to Interferon-induced transmembrane protein 3
           (Interferon-inducible protein 1-8U) [Canis familiaris].
          Length = 165

 Score =  152 bits (383), Expect = 6e-37
 Identities = 90/159 (56%), Positives = 106/159 (66%)
 Frame = +3

Query: 30  PAHPLSRPQLLLGTMNCASQPFFTGAHGGPPTYEMLKEEHEVAVLGAPQTSAPVATTVIN 209
           PA P SRP LL  T   A   FF G H      EM+  +++V V GA  ++AP  TTVIN
Sbjct: 15  PALPSSRPHLLGATWPPAL--FFPG-HACASPREMM--QNKVDVRGALLSTAPATTTVIN 69

Query: 210 IRSETSVPDHVVWSLFNTLFMNWCCLGFVAFAYSVKARDRKMVGDIIGAQSYASTAKCLN 389
           +  ET VPDHVVWSLFNT+F+N  CLGFVAF YSVKARDRKMVGD+ GAQS+ASTA+CLN
Sbjct: 70  VPEETVVPDHVVWSLFNTIFLNSFCLGFVAFVYSVKARDRKMVGDLTGAQSFASTARCLN 129

Query: 390 IWALVLGIFLTIGAVALLVFACIAVYEMALQHAKSNRGY 506
           IWALVLGI     ++ LL  A  A Y   LQ  + +  Y
Sbjct: 130 IWALVLGII----SIVLLGMAYAAAYGALLQVMQESGRY 164


>ref|XP_848464.1| PREDICTED: similar to IFITM5 [Canis familiaris].
          Length = 136

 Score =  127 bits (318), Expect = 2e-29
 Identities = 69/140 (49%), Positives = 86/140 (61%), Gaps = 1/140 (0%)
 Frame = +3

Query: 72  MNCASQPFFTGAHG-GPPTYEMLKEEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVW 248
           M+ A +P   GA   GPPTYEMLKEEHEV VLG+                   VPDHVVW
Sbjct: 1   MSRAPRPLLPGARAAGPPTYEMLKEEHEVVVLGSGL-----------------VPDHVVW 43

Query: 249 SLFNTLFMNWCCLGFVAFAYSVKARDRKMVGDIIGAQSYASTAKCLNIWALVLGIFLTIG 428
           SLFNT+FMNWCCLGFVAFAYS KARD+K+ GD+  A+ + S AKC NI A +  +   + 
Sbjct: 44  SLFNTVFMNWCCLGFVAFAYSEKARDQKVAGDLEAARRFGSKAKCYNILATMWALVPPLL 103

Query: 429 AVALLVFACIAVYEMALQHA 488
            +AL+V   + +  +A   A
Sbjct: 104 LLALVVTGALHLSRLAKDSA 123


>ref|XP_848556.1| PREDICTED: similar to interferon induced transmembrane protein 1
           (9-27) [Canis familiaris].
          Length = 79

 Score = 95.1 bits (235), Expect = 8e-20
 Identities = 44/78 (56%), Positives = 56/78 (71%)
 Frame = +3

Query: 270 MNWCCLGFVAFAYSVKARDRKMVGDIIGAQSYASTAKCLNIWALVLGIFLTIGAVALLVF 449
           MNWC  GF+AF+YSVK RDRKM GD+ GAQS+ASTA+CLNIWALVLG+ LT+  V L+  
Sbjct: 1   MNWCGRGFMAFSYSVKTRDRKMAGDLTGAQSFASTARCLNIWALVLGLLLTVTFVILVST 60

Query: 450 ACIAVYEMALQHAKSNRG 503
             + ++E   +  K   G
Sbjct: 61  GSLVIFETVSEMVKHYGG 78


>ref|XP_854310.1| PREDICTED: similar to Interferon-inducible protein [Canis
           familiaris].
          Length = 274

 Score = 77.0 bits (188), Expect = 2e-14
 Identities = 50/150 (33%), Positives = 72/150 (48%), Gaps = 24/150 (16%)
 Frame = +3

Query: 30  PAHPLSRPQLLLGTMNCASQPFFTGAHGGP---------------PTYEMLKEEHEVAVL 164
           P  P   P+   G   C S+P    A   P               P      +   V   
Sbjct: 109 PRPPAGSPK---GCFACVSKPPALQAPAAPAPEPSASPPMAPTLFPMESKSSKTDSVRAS 165

Query: 165 GAPQTSAPVA--------TTVINIRSETS-VPDHVVWSLFNTLFMNWCCLGFVAFAYSVK 317
           GAPQ    +A        TTVI +  +T+ V D+ +WS+FN +++N+CCLGF+A AYS+K
Sbjct: 166 GAPQACKHLAEKKTMTNPTTVIEVYPDTTEVNDYYLWSIFNFVYLNFCCLGFIALAYSLK 225

Query: 318 ARDRKMVGDIIGAQSYASTAKCLNIWALVL 407
            RD+K++ D+ GA   A TA+  NI +  L
Sbjct: 226 VRDKKLLNDLNGAVEDAKTARLFNITSSAL 255


>ref|XP_536539.2| PREDICTED: similar to olfactory receptor 973 [Canis familiaris].
          Length = 370

 Score = 72.4 bits (176), Expect = 6e-13
 Identities = 28/37 (75%), Positives = 34/37 (91%)
 Frame = +3

Query: 228 VPDHVVWSLFNTLFMNWCCLGFVAFAYSVKARDRKMV 338
           +PDH+ WSLFNT+F+NWCCLGF AFAYSVK+R RK+V
Sbjct: 1   MPDHIFWSLFNTIFLNWCCLGFAAFAYSVKSRGRKLV 37


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 45,762,956
Number of extensions: 1572679
Number of successful extensions: 6468
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 6432
Number of HSP's successfully gapped: 7
Length of query: 316
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 213
Effective length of database: 15,440,896
Effective search space: 3288910848
Effective search space used: 3288910848
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002384
         (948 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_003632.3| interferon-induced transmembrane protein 1 [Hom...   192   3e-49
Alignment   gi|NP_066362.2| interferon-induced transmembrane protein 3 [Hom...   189   3e-48
Alignment   gi|NP_006426.2| interferon-induced transmembrane protein 2 [Hom...   183   2e-46
Alignment   gi|NP_001020466.1| interferon-induced transmembrane protein 5 [...    85   1e-16
Alignment   gi|NP_001164291.2| interferon-induced transmembrane protein 10 ...    75   7e-14

>ref|NP_003632.3| interferon-induced transmembrane protein 1 [Homo sapiens].
          Length = 125

 Score =  192 bits (489), Expect = 3e-49
 Identities = 91/125 (72%), Positives = 105/125 (84%)
 Frame = +3

Query: 132 MLKEEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWSLFNTLFMNWCCLGFVAFAYS 311
           M KEEHEVAVLGAP ++    +TVINI SETSVPDHVVWSLFNTLF+NWCCLGF+AFAYS
Sbjct: 1   MHKEEHEVAVLGAPPSTILPRSTVINIHSETSVPDHVVWSLFNTLFLNWCCLGFIAFAYS 60

Query: 312 VKARDRKMVGDIIGAQSYASTAKCLNIWALVLGIFLTIGAVALLVFACIAVYEMALQHAK 491
           VK+RDRKMVGD+ GAQ+YASTAKCLNIWAL+LGI +TIG + LLVF  + VY + LQ  +
Sbjct: 61  VKSRDRKMVGDVTGAQAYASTAKCLNIWALILGILMTIGFILLLVFGSVTVYHIMLQIIQ 120

Query: 492 SNRGY 506
             RGY
Sbjct: 121 EKRGY 125


>ref|NP_066362.2| interferon-induced transmembrane protein 3 [Homo sapiens].
          Length = 133

 Score =  189 bits (480), Expect = 3e-48
 Identities = 93/126 (73%), Positives = 105/126 (83%), Gaps = 1/126 (0%)
 Frame = +3

Query: 72  MNCASQPFFTGAHGG-PPTYEMLKEEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVW 248
           MN   Q FF+  + G PP YEMLKEEHEVAVLGAP   AP  +TVI+IRSETSVPDHVVW
Sbjct: 1   MNHTVQTFFSPVNSGQPPNYEMLKEEHEVAVLGAPHNPAPPTSTVIHIRSETSVPDHVVW 60

Query: 249 SLFNTLFMNWCCLGFVAFAYSVKARDRKMVGDIIGAQSYASTAKCLNIWALVLGIFLTIG 428
           SLFNTLFMN CCLGF+AFAYSVK+RDRKMVGD+ GAQ+YASTAKCLNIWAL+LGI +TI 
Sbjct: 61  SLFNTLFMNPCCLGFIAFAYSVKSRDRKMVGDVTGAQAYASTAKCLNIWALILGILMTIL 120

Query: 429 AVALLV 446
            + + V
Sbjct: 121 LIVIPV 126


>ref|NP_006426.2| interferon-induced transmembrane protein 2 [Homo sapiens].
          Length = 132

 Score =  183 bits (465), Expect = 2e-46
 Identities = 89/118 (75%), Positives = 98/118 (83%)
 Frame = +3

Query: 72  MNCASQPFFTGAHGGPPTYEMLKEEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWS 251
           MN   Q F     G PP YEMLKEE EVA+LG P   AP  +TVI+IRSETSVPDHVVWS
Sbjct: 1   MNHIVQTFSPVNSGQPPNYEMLKEEQEVAMLGVPHNPAPPMSTVIHIRSETSVPDHVVWS 60

Query: 252 LFNTLFMNWCCLGFVAFAYSVKARDRKMVGDIIGAQSYASTAKCLNIWALVLGIFLTI 425
           LFNTLFMN CCLGF+AFAYSVK+RDRKMVGD+ GAQ+YASTAKCLNIWAL+LGIF+TI
Sbjct: 61  LFNTLFMNTCCLGFIAFAYSVKSRDRKMVGDVTGAQAYASTAKCLNIWALILGIFMTI 118


>ref|NP_001020466.1| interferon-induced transmembrane protein 5 [Homo sapiens].
          Length = 132

 Score = 84.7 bits (208), Expect = 1e-16
 Identities = 47/101 (46%), Positives = 66/101 (65%), Gaps = 10/101 (9%)
 Frame = +3

Query: 168 APQTSAPVATTVINIRSETSVP-DHVVWSLFNTLFMNWCCLGFVAFAYSVKARDRKMVGD 344
           AP  S   A T + + +    P DH++WS+F+TL++N CCLGF+A AYS+KARD+K+VGD
Sbjct: 12  APTPSKAGAHTALTLGAPHPPPRDHLIWSVFSTLYLNLCCLGFLALAYSIKARDQKVVGD 71

Query: 345 IIGAQSYASTAKCLNI----WALV-----LGIFLTIGAVAL 440
           +  A+ + S AKC NI    W LV     LG+ +T GA+ L
Sbjct: 72  LEAARRFGSKAKCYNILAAMWTLVPPLLLLGLVVT-GALHL 111


>ref|NP_001164291.2| interferon-induced transmembrane protein 10 [Homo sapiens].
          Length = 228

 Score = 75.5 bits (184), Expect = 7e-14
 Identities = 40/102 (39%), Positives = 61/102 (59%), Gaps = 1/102 (0%)
 Frame = +3

Query: 105 AHGGPPTYEMLKEEHEVAVLGAPQTSAPVATTVINIRSETS-VPDHVVWSLFNTLFMNWC 281
           A G PP  + L E+  +             TTVI +  +T+ V D+ +WS+FN +++N+C
Sbjct: 118 AAGAPPACKHLAEKKTMTN----------PTTVIEVYPDTTEVNDYYLWSIFNFVYLNFC 167

Query: 282 CLGFVAFAYSVKARDRKMVGDIIGAQSYASTAKCLNIWALVL 407
           CLGF+A AYS+K RD+K++ D+ GA   A TA+  NI +  L
Sbjct: 168 CLGFIALAYSLKVRDKKLLNDLNGAVEDAKTARLFNITSSAL 209


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 44,801,964
Number of extensions: 1537291
Number of successful extensions: 6220
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 6177
Number of HSP's successfully gapped: 5
Length of query: 316
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 214
Effective length of database: 14,934,836
Effective search space: 3196054904
Effective search space used: 3196054904
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002384
         (948 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_079654.1| interferon-induced transmembrane protein 3 [Mus...   171   6e-43
Alignment   gi|XP_910503.1| PREDICTED: interferon-induced transmembrane pro...   160   1e-39
Alignment   gi|NP_109619.1| interferon-induced transmembrane protein 2 [Mus...   160   2e-39
Alignment   gi|XP_357752.4| PREDICTED: interferon-induced transmembrane pro...   144   8e-35
Alignment   gi|XP_920076.2| PREDICTED: interferon-induced transmembrane pro...   144   8e-35
Alignment   gi|NP_083244.1| interferon induced transmembrane protein 7 [Mus...   132   3e-31
Alignment   gi|NP_001106186.1| interferon-induced transmembrane protein 1 [...   131   9e-31
Alignment   gi|NP_081096.3| interferon-induced transmembrane protein 1 [Mus...   131   9e-31
Alignment   gi|NP_001028804.1| interferon induced transmembrane protein 6 [...   115   4e-26
Alignment   gi|NP_444318.1| interferon-induced transmembrane protein 5 [Mus...    78   9e-15

>ref|NP_079654.1| interferon-induced transmembrane protein 3 [Mus musculus].
          Length = 137

 Score =  171 bits (434), Expect = 6e-43
 Identities = 84/126 (66%), Positives = 99/126 (78%), Gaps = 1/126 (0%)
 Frame = +3

Query: 72  MNCASQPFFTGAHGG-PPTYEMLKEEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVW 248
           MN  SQ F T A GG PP YE +KEE+EVA +GAP  SA V TTVIN+  E SVPDHVVW
Sbjct: 1   MNHTSQAFITAASGGQPPNYERIKEEYEVAEMGAPHGSASVRTTVINMPREVSVPDHVVW 60

Query: 249 SLFNTLFMNWCCLGFVAFAYSVKARDRKMVGDIIGAQSYASTAKCLNIWALVLGIFLTIG 428
           SLFNTLFMN+CCLGF+A+AYSVK+RDRKMVGD+ GAQ+YASTAKCLNI  LVL I + + 
Sbjct: 61  SLFNTLFMNFCCLGFIAYAYSVKSRDRKMVGDVTGAQAYASTAKCLNISTLVLSILMVVI 120

Query: 429 AVALLV 446
            +  ++
Sbjct: 121 TIVSVI 126


>ref|XP_910503.1| PREDICTED: interferon-induced transmembrane protein 3-like [Mus
           musculus].
          Length = 144

 Score =  160 bits (405), Expect = 1e-39
 Identities = 78/137 (56%), Positives = 98/137 (71%)
 Frame = +3

Query: 72  MNCASQPFFTGAHGGPPTYEMLKEEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWS 251
           M+  SQ F +   G PP+YE +KEE+ V  LG P  SA V TTVIN+  E SVPDHVVWS
Sbjct: 1   MSHNSQAFLSTNAGLPPSYETIKEEYRVTELGEPSNSAVVRTTVINMPREVSVPDHVVWS 60

Query: 252 LFNTLFMNWCCLGFVAFAYSVKARDRKMVGDIIGAQSYASTAKCLNIWALVLGIFLTIGA 431
           LFNTLF N CCLGF+A+AYSVK+RDRKMVGD++GAQ+YASTAKCLNI +L+  I + I  
Sbjct: 61  LFNTLFFNACCLGFIAYAYSVKSRDRKMVGDVVGAQAYASTAKCLNISSLIFSILMVIIC 120

Query: 432 VALLVFACIAVYEMALQ 482
           + +     + V++   Q
Sbjct: 121 IIIFSTTSVVVFQSFAQ 137


>ref|NP_109619.1| interferon-induced transmembrane protein 2 [Mus musculus].
          Length = 144

 Score =  160 bits (404), Expect = 2e-39
 Identities = 79/137 (57%), Positives = 98/137 (71%)
 Frame = +3

Query: 72  MNCASQPFFTGAHGGPPTYEMLKEEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWS 251
           M+  SQ F +   G PP+YE +KEE+ V  LG P  SA V TTVIN+  E SVPDHVVWS
Sbjct: 1   MSHNSQAFLSTNAGLPPSYETIKEEYGVTELGEPSNSAVVRTTVINMPREVSVPDHVVWS 60

Query: 252 LFNTLFMNWCCLGFVAFAYSVKARDRKMVGDIIGAQSYASTAKCLNIWALVLGIFLTIGA 431
           LFNTLF N CCLGFVA+AYSVK+RDRKMVGD++GAQ+YASTAKCLNI +L+  I + I  
Sbjct: 61  LFNTLFFNACCLGFVAYAYSVKSRDRKMVGDVVGAQAYASTAKCLNISSLIFSILMVIIC 120

Query: 432 VALLVFACIAVYEMALQ 482
           + +     + V++   Q
Sbjct: 121 IIIFSTTSVVVFQSFAQ 137


>ref|XP_357752.4| PREDICTED: interferon-induced transmembrane protein 3-like [Mus
           musculus].
          Length = 211

 Score =  144 bits (364), Expect = 8e-35
 Identities = 76/145 (52%), Positives = 96/145 (66%), Gaps = 3/145 (2%)
 Frame = +3

Query: 72  MNCASQPFFTGAHGGPPTYEMLKEEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWS 251
           M+  SQ F     G PP+YE +KEE+ V  LG P  SA V TTVIN+  E SVPDHV WS
Sbjct: 1   MSHNSQAFLPTNAGLPPSYETIKEEYGVTELGEPNNSAAVRTTVINMPREVSVPDHVAWS 60

Query: 252 LFNTLFMNWCCLGFVAFAYSVKARDRKMVGDIIGAQSYASTAKCLNIWALVLGIFLTIGA 431
           LF+TLF N CCLGF A+AYS   RDRKMVGD+IGAQ++ASTAKCLNI +L+  I + I  
Sbjct: 61  LFSTLFFNACCLGFAAYAYS---RDRKMVGDVIGAQAHASTAKCLNISSLIFSILMVIIC 117

Query: 432 VALLVFACIAVYEMALQ---HAKSN 497
           + +     + V++   Q   H+K +
Sbjct: 118 IIIFSITSVVVFQSFSQRTPHSKDS 142


>ref|XP_920076.2| PREDICTED: interferon-induced transmembrane protein 3-like [Mus
           musculus].
          Length = 211

 Score =  144 bits (364), Expect = 8e-35
 Identities = 76/145 (52%), Positives = 96/145 (66%), Gaps = 3/145 (2%)
 Frame = +3

Query: 72  MNCASQPFFTGAHGGPPTYEMLKEEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWS 251
           M+  SQ F     G PP+YE +KEE+ V  LG P  SA V TTVIN+  E SVPDHV WS
Sbjct: 1   MSHNSQAFLPTNAGLPPSYETIKEEYGVTELGEPNNSAAVRTTVINMPREVSVPDHVAWS 60

Query: 252 LFNTLFMNWCCLGFVAFAYSVKARDRKMVGDIIGAQSYASTAKCLNIWALVLGIFLTIGA 431
           LF+TLF N CCLGF A+AYS   RDRKMVGD+IGAQ++ASTAKCLNI +L+  I + I  
Sbjct: 61  LFSTLFFNACCLGFAAYAYS---RDRKMVGDVIGAQAHASTAKCLNISSLIFSILMVIIC 117

Query: 432 VALLVFACIAVYEMALQ---HAKSN 497
           + +     + V++   Q   H+K +
Sbjct: 118 IIIFSITSVVVFQSFSQRTPHSKDS 142


>ref|NP_083244.1| interferon induced transmembrane protein 7 [Mus musculus].
          Length = 107

 Score =  132 bits (333), Expect = 3e-31
 Identities = 62/98 (63%), Positives = 79/98 (80%)
 Frame = +3

Query: 132 MLKEEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWSLFNTLFMNWCCLGFVAFAYS 311
           M K++HEV V+G P TS    TT+I +  E S PD+VVWSLFNTLFMN+CCLGF+A+AYS
Sbjct: 1   MPKDQHEVVVMGTPHTSTSSTTTIITM-PEISKPDYVVWSLFNTLFMNFCCLGFIAYAYS 59

Query: 312 VKARDRKMVGDIIGAQSYASTAKCLNIWALVLGIFLTI 425
           VK+RDRKMVGD+ GAQ++ASTA+CLNI  L+L + + I
Sbjct: 60  VKSRDRKMVGDMTGAQAFASTARCLNISCLILSVVMVI 97


>ref|NP_001106186.1| interferon-induced transmembrane protein 1 [Mus musculus].
          Length = 106

 Score =  131 bits (329), Expect = 9e-31
 Identities = 67/108 (62%), Positives = 79/108 (73%)
 Frame = +3

Query: 132 MLKEEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWSLFNTLFMNWCCLGFVAFAYS 311
           M KE+ EV VLG+P  S     T IN+  E S PDHVVWSLFNTLFMN+CCLGFVA+AYS
Sbjct: 1   MPKEQQEVVVLGSPHISTSATATTINM-PEISTPDHVVWSLFNTLFMNFCCLGFVAYAYS 59

Query: 312 VKARDRKMVGDIIGAQSYASTAKCLNIWALVLGIFLTIGAVALLVFAC 455
           VK+RDRKMVGD  GAQ++ASTAKCLNI +L    F TI    +++  C
Sbjct: 60  VKSRDRKMVGDTTGAQAFASTAKCLNISSL----FFTILTAIVVIVVC 103


>ref|NP_081096.3| interferon-induced transmembrane protein 1 [Mus musculus].
          Length = 106

 Score =  131 bits (329), Expect = 9e-31
 Identities = 67/108 (62%), Positives = 79/108 (73%)
 Frame = +3

Query: 132 MLKEEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWSLFNTLFMNWCCLGFVAFAYS 311
           M KE+ EV VLG+P  S     T IN+  E S PDHVVWSLFNTLFMN+CCLGFVA+AYS
Sbjct: 1   MPKEQQEVVVLGSPHISTSATATTINM-PEISTPDHVVWSLFNTLFMNFCCLGFVAYAYS 59

Query: 312 VKARDRKMVGDIIGAQSYASTAKCLNIWALVLGIFLTIGAVALLVFAC 455
           VK+RDRKMVGD  GAQ++ASTAKCLNI +L    F TI    +++  C
Sbjct: 60  VKSRDRKMVGDTTGAQAFASTAKCLNISSL----FFTILTAIVVIVVC 103


>ref|NP_001028804.1| interferon induced transmembrane protein 6 [Mus musculus].
          Length = 104

 Score =  115 bits (289), Expect = 4e-26
 Identities = 55/90 (61%), Positives = 68/90 (75%)
 Frame = +3

Query: 180 SAPVATTVINIRSETSVPDHVVWSLFNTLFMNWCCLGFVAFAYSVKARDRKMVGDIIGAQ 359
           SAPV +TV+ I S+   PDH+ WS FNT+FMN CCLGF+A+ YSVK+RDRKMVGD+ GAQ
Sbjct: 8   SAPVPSTVVCINSDVIQPDHITWSTFNTVFMNGCCLGFIAYIYSVKSRDRKMVGDMTGAQ 67

Query: 360 SYASTAKCLNIWALVLGIFLTIGAVALLVF 449
           S+ASTAK LNI ALV+ +   I  + L  F
Sbjct: 68  SHASTAKILNILALVISLIFYIMLIVLYSF 97


>ref|NP_444318.1| interferon-induced transmembrane protein 5 [Mus musculus].
          Length = 134

 Score = 78.2 bits (191), Expect = 9e-15
 Identities = 38/100 (38%), Positives = 64/100 (64%), Gaps = 1/100 (1%)
 Frame = +3

Query: 192 ATTVINIRSETSVP-DHVVWSLFNTLFMNWCCLGFVAFAYSVKARDRKMVGDIIGAQSYA 368
           A T +++ +    P DH++WS+F+T+++N CCLGF+A  +SVKARD+KM G++  A+ Y 
Sbjct: 22  AHTALSMGTPGPTPRDHMLWSVFSTMYLNLCCLGFLALVHSVKARDQKMAGNLEAARQYG 81

Query: 369 STAKCLNIWALVLGIFLTIGAVALLVFACIAVYEMALQHA 488
           S AKC NI A +  +   +  + L+V   + + ++A   A
Sbjct: 82  SKAKCYNILAAMWTLVPPLLLLGLVVTGALHLSKLAKDSA 121


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 37,552,539
Number of extensions: 1256634
Number of successful extensions: 4900
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 4857
Number of HSP's successfully gapped: 11
Length of query: 316
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 215
Effective length of database: 12,583,923
Effective search space: 2705543445
Effective search space used: 2705543445
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002384
         (948 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001188311.1| interferon-induced transmembrane protein 3 [...   252   2e-67
Alignment   gi|XP_003354459.1| PREDICTED: interferon-induced transmembrane ...   249   2e-66
Alignment   gi|XP_003354458.1| PREDICTED: interferon-induced transmembrane ...   249   2e-66
Alignment   gi|XP_003354457.1| PREDICTED: interferon-induced transmembrane ...   249   2e-66
Alignment   gi|XP_003354456.1| PREDICTED: interferon-induced transmembrane ...   249   2e-66
Alignment   gi|XP_003354463.1| PREDICTED: interferon-induced transmembrane ...   247   6e-66
Alignment   gi|XP_003124283.1| PREDICTED: interferon-induced transmembrane ...   229   1e-60
Alignment   gi|XP_003353695.1| PREDICTED: interferon-induced transmembrane ...   215   2e-56
Alignment   gi|XP_003124278.1| PREDICTED: interferon-induced transmembrane ...   206   2e-53
Alignment   gi|XP_003354470.1| PREDICTED: interferon-induced transmembrane ...   176   2e-44

>ref|NP_001188311.1| interferon-induced transmembrane protein 3 [Sus scrofa].
          Length = 145

 Score =  252 bits (644), Expect = 2e-67
 Identities = 121/145 (83%), Positives = 128/145 (88%)
 Frame = +3

Query: 72  MNCASQPFFTGAHGGPPTYEMLKEEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWS 251
           MNCASQPFFTGAHGGPPTYEMLKEEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWS
Sbjct: 1   MNCASQPFFTGAHGGPPTYEMLKEEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWS 60

Query: 252 LFNTLFMNWCCLGFVAFAYSVKARDRKMVGDIIGAQSYASTAKCLNIWALVLGIFLTIGA 431
           LFNTLFMNWCCLGFVAFAYSVKARDRKMVGDIIGAQSYASTAKCLNIWALVLG+ L I  
Sbjct: 61  LFNTLFMNWCCLGFVAFAYSVKARDRKMVGDIIGAQSYASTAKCLNIWALVLGLLLIIAF 120

Query: 432 VALLVFACIAVYEMALQHAKSNRGY 506
           + +     + +++  LQ  K  RGY
Sbjct: 121 IIVCTTGSLVIFQAVLQLIKDYRGY 145


>ref|XP_003354459.1| PREDICTED: interferon-induced transmembrane protein 1-like isoform
           4 [Sus scrofa].
          Length = 125

 Score =  249 bits (636), Expect = 2e-66
 Identities = 123/125 (98%), Positives = 124/125 (99%)
 Frame = +3

Query: 132 MLKEEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWSLFNTLFMNWCCLGFVAFAYS 311
           ML+EEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWSLFN LFMNWCCLGFVAFAYS
Sbjct: 1   MLREEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWSLFNALFMNWCCLGFVAFAYS 60

Query: 312 VKARDRKMVGDIIGAQSYASTAKCLNIWALVLGIFLTIGAVALLVFACIAVYEMALQHAK 491
           VKARDRKMVGDIIGAQSYASTAKCLNIWALVLGIFLTIGAVALLVFACIAVYEMALQHAK
Sbjct: 61  VKARDRKMVGDIIGAQSYASTAKCLNIWALVLGIFLTIGAVALLVFACIAVYEMALQHAK 120

Query: 492 SNRGY 506
           SNRGY
Sbjct: 121 SNRGY 125


>ref|XP_003354458.1| PREDICTED: interferon-induced transmembrane protein 1-like isoform
           3 [Sus scrofa].
          Length = 125

 Score =  249 bits (636), Expect = 2e-66
 Identities = 123/125 (98%), Positives = 124/125 (99%)
 Frame = +3

Query: 132 MLKEEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWSLFNTLFMNWCCLGFVAFAYS 311
           ML+EEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWSLFN LFMNWCCLGFVAFAYS
Sbjct: 1   MLREEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWSLFNALFMNWCCLGFVAFAYS 60

Query: 312 VKARDRKMVGDIIGAQSYASTAKCLNIWALVLGIFLTIGAVALLVFACIAVYEMALQHAK 491
           VKARDRKMVGDIIGAQSYASTAKCLNIWALVLGIFLTIGAVALLVFACIAVYEMALQHAK
Sbjct: 61  VKARDRKMVGDIIGAQSYASTAKCLNIWALVLGIFLTIGAVALLVFACIAVYEMALQHAK 120

Query: 492 SNRGY 506
           SNRGY
Sbjct: 121 SNRGY 125


>ref|XP_003354457.1| PREDICTED: interferon-induced transmembrane protein 1-like isoform
           2 [Sus scrofa].
          Length = 125

 Score =  249 bits (636), Expect = 2e-66
 Identities = 123/125 (98%), Positives = 124/125 (99%)
 Frame = +3

Query: 132 MLKEEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWSLFNTLFMNWCCLGFVAFAYS 311
           ML+EEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWSLFN LFMNWCCLGFVAFAYS
Sbjct: 1   MLREEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWSLFNALFMNWCCLGFVAFAYS 60

Query: 312 VKARDRKMVGDIIGAQSYASTAKCLNIWALVLGIFLTIGAVALLVFACIAVYEMALQHAK 491
           VKARDRKMVGDIIGAQSYASTAKCLNIWALVLGIFLTIGAVALLVFACIAVYEMALQHAK
Sbjct: 61  VKARDRKMVGDIIGAQSYASTAKCLNIWALVLGIFLTIGAVALLVFACIAVYEMALQHAK 120

Query: 492 SNRGY 506
           SNRGY
Sbjct: 121 SNRGY 125


>ref|XP_003354456.1| PREDICTED: interferon-induced transmembrane protein 1-like isoform
           1 [Sus scrofa].
          Length = 125

 Score =  249 bits (636), Expect = 2e-66
 Identities = 123/125 (98%), Positives = 124/125 (99%)
 Frame = +3

Query: 132 MLKEEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWSLFNTLFMNWCCLGFVAFAYS 311
           ML+EEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWSLFN LFMNWCCLGFVAFAYS
Sbjct: 1   MLREEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWSLFNALFMNWCCLGFVAFAYS 60

Query: 312 VKARDRKMVGDIIGAQSYASTAKCLNIWALVLGIFLTIGAVALLVFACIAVYEMALQHAK 491
           VKARDRKMVGDIIGAQSYASTAKCLNIWALVLGIFLTIGAVALLVFACIAVYEMALQHAK
Sbjct: 61  VKARDRKMVGDIIGAQSYASTAKCLNIWALVLGIFLTIGAVALLVFACIAVYEMALQHAK 120

Query: 492 SNRGY 506
           SNRGY
Sbjct: 121 SNRGY 125


>ref|XP_003354463.1| PREDICTED: interferon-induced transmembrane protein 1-like [Sus
           scrofa].
          Length = 125

 Score =  247 bits (631), Expect = 6e-66
 Identities = 122/125 (97%), Positives = 123/125 (98%)
 Frame = +3

Query: 132 MLKEEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWSLFNTLFMNWCCLGFVAFAYS 311
           ML+EEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWSLFN LFMNWCCLGFVAFAYS
Sbjct: 1   MLREEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWSLFNALFMNWCCLGFVAFAYS 60

Query: 312 VKARDRKMVGDIIGAQSYASTAKCLNIWALVLGIFLTIGAVALLVFACIAVYEMALQHAK 491
           VKARDRKMVGDI GAQSYASTAKCLNIWALVLGIFLTIGAVALLVFACIAVYEMALQHAK
Sbjct: 61  VKARDRKMVGDITGAQSYASTAKCLNIWALVLGIFLTIGAVALLVFACIAVYEMALQHAK 120

Query: 492 SNRGY 506
           SNRGY
Sbjct: 121 SNRGY 125


>ref|XP_003124283.1| PREDICTED: interferon-induced transmembrane protein 1-like [Sus
           scrofa].
          Length = 124

 Score =  229 bits (585), Expect = 1e-60
 Identities = 116/125 (92%), Positives = 118/125 (94%)
 Frame = +3

Query: 132 MLKEEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWSLFNTLFMNWCCLGFVAFAYS 311
           ML+EEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWSLFN LFMNWCCLGFVAFAYS
Sbjct: 1   MLREEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWSLFNALFMNWCCLGFVAFAYS 60

Query: 312 VKARDRKMVGDIIGAQSYASTAKCLNIWALVLGIFLTIGAVALLVFACIAVYEMALQHAK 491
           VKARDRKMVGDIIGAQSYASTAKCLNIWALVLGIFLTIGAVALLVFA I  Y M L+ AK
Sbjct: 61  VKARDRKMVGDIIGAQSYASTAKCLNIWALVLGIFLTIGAVALLVFAYITAYHM-LERAK 119

Query: 492 SNRGY 506
           SNRGY
Sbjct: 120 SNRGY 124


>ref|XP_003353695.1| PREDICTED: interferon-induced transmembrane protein 1-like [Sus
           scrofa].
          Length = 207

 Score =  215 bits (548), Expect = 2e-56
 Identities = 106/130 (81%), Positives = 115/130 (88%)
 Frame = +3

Query: 117 PPTYEMLKEEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWSLFNTLFMNWCCLGFV 296
           P + + +KEE EVA +G P+ SAP+ +TVI I  ET   DHVVWSLF+TLF+NWCCLGFV
Sbjct: 78  PHSQDTVKEEQEVAEMGPPEGSAPMTSTVITIPRETPHRDHVVWSLFSTLFLNWCCLGFV 137

Query: 297 AFAYSVKARDRKMVGDIIGAQSYASTAKCLNIWALVLGIFLTIGAVALLVFACIAVYEMA 476
           AFAYSVKARDRKMVGDI GAQSYASTAKCLNIWALVLGIFLTIGAVALLVFACIAVYEMA
Sbjct: 138 AFAYSVKARDRKMVGDITGAQSYASTAKCLNIWALVLGIFLTIGAVALLVFACIAVYEMA 197

Query: 477 LQHAKSNRGY 506
           LQHAKSNRGY
Sbjct: 198 LQHAKSNRGY 207


>ref|XP_003124278.1| PREDICTED: interferon-induced transmembrane protein 1 [Sus scrofa].
          Length = 124

 Score =  206 bits (524), Expect = 2e-53
 Identities = 101/125 (80%), Positives = 109/125 (87%)
 Frame = +3

Query: 132 MLKEEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWSLFNTLFMNWCCLGFVAFAYS 311
           M+K +HE+  LGAPQTSAPVATTVI I  ETSVPDH+VWSLFNTLF+NWCCLGFVAFAYS
Sbjct: 1   MIKSQHEMDGLGAPQTSAPVATTVITIPRETSVPDHIVWSLFNTLFLNWCCLGFVAFAYS 60

Query: 312 VKARDRKMVGDIIGAQSYASTAKCLNIWALVLGIFLTIGAVALLVFACIAVYEMALQHAK 491
           VKARDRKMVGDIIGAQSYASTAKCLNIWAL+LG+ LTIGA  LLVF  I  Y M L+ AK
Sbjct: 61  VKARDRKMVGDIIGAQSYASTAKCLNIWALILGLILTIGATVLLVFVYITAYHM-LERAK 119

Query: 492 SNRGY 506
           SNRGY
Sbjct: 120 SNRGY 124


>ref|XP_003354470.1| PREDICTED: interferon-induced transmembrane protein 3-like, partial
           [Sus scrofa].
          Length = 82

 Score =  176 bits (445), Expect = 2e-44
 Identities = 82/82 (100%), Positives = 82/82 (100%)
 Frame = +3

Query: 72  MNCASQPFFTGAHGGPPTYEMLKEEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWS 251
           MNCASQPFFTGAHGGPPTYEMLKEEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWS
Sbjct: 1   MNCASQPFFTGAHGGPPTYEMLKEEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWS 60

Query: 252 LFNTLFMNWCCLGFVAFAYSVK 317
           LFNTLFMNWCCLGFVAFAYSVK
Sbjct: 61  LFNTLFMNWCCLGFVAFAYSVK 82


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 28,439,659
Number of extensions: 993921
Number of successful extensions: 4185
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 4150
Number of HSP's successfully gapped: 14
Length of query: 316
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 217
Effective length of database: 8,879,129
Effective search space: 1926770993
Effective search space used: 1926770993
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002384
         (948 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr02                                                         737   0.0  
Sscrofa_Chr01                                                         737   0.0  

>Sscrofa_Chr02 
||          Length = 162569375

 Score =  737 bits (372), Expect = 0.0
 Identities = 375/376 (99%)
 Strand = Plus / Plus

                                                                             
Query: 573       ttcctacaggacttgcaaccagggaggcacagattcaagtagcaagagtcccacgtgctc 632
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162096544 ttcctacaggacttgcaaccagggaggcacagattcaagtagcaagagtcccacgtgctc 162096603

                                                                             
Query: 633       tgaggaaagcagagaggcagggctggggaacacccaccaccaagaccttccagagaagtt 692
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162096604 tgaggaaagcagagaggcagggctggggaacacccaccaccaagaccttccagagaagtt 162096663

                                                                             
Query: 693       acaggctcgccttacagacgggggctggtgccagcagagggtcagtcactaggcatccgc 752
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162096664 acaggctcgccttacagacgggggctggtgccagcagagggtcagtcactaggcatccgc 162096723

                                                                             
Query: 753       agctgatcggttgccagacccgggtttccagggagggaagaaaccgagttccaggcggtc 812
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162096724 agctgatcggttgccagacccgggtttccagggagggaagaaaccgagttccaggcggtc 162096783

                                                                             
Query: 813       ccaggatggccagggtgtgagtcagttcatatccccggggcttcctggccccatttcagc 872
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162096784 ccaggatggccagggtgtgagtcagttcatatccccggggcttcctggccccatttcagc 162096843

                                                                             
Query: 873       ccctccggcgcatctgaaggggctgaaatgggtggacctccgtgtgtgcagagtcctcgt 932
                 ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162096844 ccctccggcgcgtctgaaggggctgaaatgggtggacctccgtgtgtgcagagtcctcgt 162096903

                                 
Query: 933       gggctccggctcggga 948
                 ||||||||||||||||
Sbjct: 162096904 gggctccggctcggga 162096919



 Score =  737 bits (372), Expect = 0.0
 Identities = 375/376 (99%)
 Strand = Plus / Minus

                                                                             
Query: 573       ttcctacaggacttgcaaccagggaggcacagattcaagtagcaagagtcccacgtgctc 632
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162335514 ttcctacaggacttgcaaccagggaggcacagattcaagtagcaagagtcccacgtgctc 162335455

                                                                             
Query: 633       tgaggaaagcagagaggcagggctggggaacacccaccaccaagaccttccagagaagtt 692
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162335454 tgaggaaagcagagaggcagggctggggaacacccaccaccaagaccttccagagaagtt 162335395

                                                                             
Query: 693       acaggctcgccttacagacgggggctggtgccagcagagggtcagtcactaggcatccgc 752
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162335394 acaggctcgccttacagacgggggctggtgccagcagagggtcagtcactaggcatccgc 162335335

                                                                             
Query: 753       agctgatcggttgccagacccgggtttccagggagggaagaaaccgagttccaggcggtc 812
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162335334 agctgatcggttgccagacccgggtttccagggagggaagaaaccgagttccaggcggtc 162335275

                                                                             
Query: 813       ccaggatggccagggtgtgagtcagttcatatccccggggcttcctggccccatttcagc 872
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162335274 ccaggatggccagggtgtgagtcagttcatatccccggggcttcctggccccatttcagc 162335215

                                                                             
Query: 873       ccctccggcgcatctgaaggggctgaaatgggtggacctccgtgtgtgcagagtcctcgt 932
                 ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162335214 ccctccggcgcgtctgaaggggctgaaatgggtggacctccgtgtgtgcagagtcctcgt 162335155

                                 
Query: 933       gggctccggctcggga 948
                 ||||||||||||||||
Sbjct: 162335154 gggctccggctcggga 162335139



 Score =  630 bits (318), Expect = e-178
 Identities = 318/318 (100%)
 Strand = Plus / Minus

                                                                             
Query: 1         aatcgaaactactggggaaacagagcacccctgcacatcccctctccagaccacagcttc 60
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162072578 aatcgaaactactggggaaacagagcacccctgcacatcccctctccagaccacagcttc 162072519

                                                                             
Query: 61        tcctgggcaccatgaactgcgcttcccagcccttcttcactggtgcccatggaggacccc 120
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162072518 tcctgggcaccatgaactgcgcttcccagcccttcttcactggtgcccatggaggacccc 162072459

                                                                             
Query: 121       caacatatgagatgctcaaggaggagcacgaggtggccgtgctgggggctccccagacct 180
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162072458 caacatatgagatgctcaaggaggagcacgaggtggccgtgctgggggctccccagacct 162072399

                                                                             
Query: 181       cagcccccgtggccaccacggtgatcaacatccgaagcgagacctccgtgcccgaccacg 240
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162072398 cagcccccgtggccaccacggtgatcaacatccgaagcgagacctccgtgcccgaccacg 162072339

                                                                             
Query: 241       tcgtctggtccctgttcaacaccctcttcatgaactggtgctgcctgggcttcgtggctt 300
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162072338 tcgtctggtccctgttcaacaccctcttcatgaactggtgctgcctgggcttcgtggctt 162072279

                                   
Query: 301       tcgcctactccgtgaagg 318
                 ||||||||||||||||||
Sbjct: 162072278 tcgcctactccgtgaagg 162072261



 Score =  622 bits (314), Expect = e-176
 Identities = 317/318 (99%)
 Strand = Plus / Plus

                                                                             
Query: 1         aatcgaaactactggggaaacagagcacccctgcacatcccctctccagaccacagcttc 60
                 ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 162353102 aatcgaaactactggggaaacagagcaccccggcacatcccctctccagaccacagcttc 162353161

                                                                             
Query: 61        tcctgggcaccatgaactgcgcttcccagcccttcttcactggtgcccatggaggacccc 120
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162353162 tcctgggcaccatgaactgcgcttcccagcccttcttcactggtgcccatggaggacccc 162353221

                                                                             
Query: 121       caacatatgagatgctcaaggaggagcacgaggtggccgtgctgggggctccccagacct 180
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162353222 caacatatgagatgctcaaggaggagcacgaggtggccgtgctgggggctccccagacct 162353281

                                                                             
Query: 181       cagcccccgtggccaccacggtgatcaacatccgaagcgagacctccgtgcccgaccacg 240
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162353282 cagcccccgtggccaccacggtgatcaacatccgaagcgagacctccgtgcccgaccacg 162353341

                                                                             
Query: 241       tcgtctggtccctgttcaacaccctcttcatgaactggtgctgcctgggcttcgtggctt 300
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162353342 tcgtctggtccctgttcaacaccctcttcatgaactggtgctgcctgggcttcgtggctt 162353401

                                   
Query: 301       tcgcctactccgtgaagg 318
                 ||||||||||||||||||
Sbjct: 162353402 tcgcctactccgtgaagg 162353419



 Score =  381 bits (192), Expect = e-103
 Identities = 195/196 (99%)
 Strand = Plus / Minus

                                                                             
Query: 316       aggcgagggaccggaagatggtgggagacatcattggggcccagagctatgcctccaccg 375
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162076993 aggcgagggaccggaagatggtgggagacatcattggggcccagagctatgcctccaccg 162076934

                                                                             
Query: 376       ccaagtgcctgaacatctgggctctggtcctgggcatttttctgaccatcggagccgtcg 435
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162076933 ccaagtgcctgaacatctgggctctggtcctgggcatttttctgaccatcggagccgtcg 162076874

                                                                             
Query: 436       ctcttctggtgtttgcatgcatagcagtctatgagatggctttacaacatgcaaagagta 495
                 ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 162076873 ctcttctggtgtttgcatgcatagcagtctacgagatggctttacaacatgcaaagagta 162076814

                                 
Query: 496       acagaggctactagca 511
                 ||||||||||||||||
Sbjct: 162076813 acagaggctactagca 162076798



 Score =  381 bits (192), Expect = e-103
 Identities = 195/196 (99%)
 Strand = Plus / Minus

                                                                             
Query: 316       aggcgagggaccggaagatggtgggagacatcattggggcccagagctatgcctccaccg 375
                 ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 162335771 aggcgagggaccggaagatggtgggagacatcactggggcccagagctatgcctccaccg 162335712

                                                                             
Query: 376       ccaagtgcctgaacatctgggctctggtcctgggcatttttctgaccatcggagccgtcg 435
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162335711 ccaagtgcctgaacatctgggctctggtcctgggcatttttctgaccatcggagccgtcg 162335652

                                                                             
Query: 436       ctcttctggtgtttgcatgcatagcagtctatgagatggctttacaacatgcaaagagta 495
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162335651 ctcttctggtgtttgcatgcatagcagtctatgagatggctttacaacatgcaaagagta 162335592

                                 
Query: 496       acagaggctactagca 511
                 ||||||||||||||||
Sbjct: 162335591 acagaggctactagca 162335576



 Score =  381 bits (192), Expect = e-103
 Identities = 195/196 (99%)
 Strand = Plus / Minus

                                                                             
Query: 316       aggcgagggaccggaagatggtgggagacatcattggggcccagagctatgcctccaccg 375
                 ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 162340035 aggcgagggaccggaagatggtgggagacatcactggggcccagagctatgcctccaccg 162339976

                                                                             
Query: 376       ccaagtgcctgaacatctgggctctggtcctgggcatttttctgaccatcggagccgtcg 435
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162339975 ccaagtgcctgaacatctgggctctggtcctgggcatttttctgaccatcggagccgtcg 162339916

                                                                             
Query: 436       ctcttctggtgtttgcatgcatagcagtctatgagatggctttacaacatgcaaagagta 495
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162339915 ctcttctggtgtttgcatgcatagcagtctatgagatggctttacaacatgcaaagagta 162339856

                                 
Query: 496       acagaggctactagca 511
                 ||||||||||||||||
Sbjct: 162339855 acagaggctactagca 162339840



 Score =  363 bits (183), Expect = 1e-97
 Identities = 189/191 (98%)
 Strand = Plus / Minus

                                                                             
Query: 128       tgagatgctcaaggaggagcacgaggtggccgtgctgggggctccccagacctcagcccc 187
                 ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162077819 tgagatgctcagggaggagcacgaggtggccgtgctgggggctccccagacctcagcccc 162077760

                                                                             
Query: 188       cgtggccaccacggtgatcaacatccgaagcgagacctccgtgcccgaccacgtcgtctg 247
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162077759 cgtggccaccacggtgatcaacatccgaagcgagacctccgtgcccgaccacgtcgtctg 162077700

                                                                             
Query: 248       gtccctgttcaacaccctcttcatgaactggtgctgcctgggcttcgtggctttcgccta 307
                 ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162077699 gtccctgttcaacgccctcttcatgaactggtgctgcctgggcttcgtggctttcgccta 162077640

                            
Query: 308       ctccgtgaagg 318
                 |||||||||||
Sbjct: 162077639 ctccgtgaagg 162077629



 Score =  363 bits (183), Expect = 1e-97
 Identities = 189/191 (98%)
 Strand = Plus / Plus

                                                                             
Query: 128       tgagatgctcaaggaggagcacgaggtggccgtgctgggggctccccagacctcagcccc 187
                 ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162095466 tgagatgctcagggaggagcacgaggtggccgtgctgggggctccccagacctcagcccc 162095525

                                                                             
Query: 188       cgtggccaccacggtgatcaacatccgaagcgagacctccgtgcccgaccacgtcgtctg 247
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162095526 cgtggccaccacggtgatcaacatccgaagcgagacctccgtgcccgaccacgtcgtctg 162095585

                                                                             
Query: 248       gtccctgttcaacaccctcttcatgaactggtgctgcctgggcttcgtggctttcgccta 307
                 ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162095586 gtccctgttcaacgccctcttcatgaactggtgctgcctgggcttcgtggctttcgccta 162095645

                            
Query: 308       ctccgtgaagg 318
                 |||||||||||
Sbjct: 162095646 ctccgtgaagg 162095656



 Score =  363 bits (183), Expect = 1e-97
 Identities = 189/191 (98%)
 Strand = Plus / Minus

                                                                             
Query: 128       tgagatgctcaaggaggagcacgaggtggccgtgctgggggctccccagacctcagcccc 187
                 ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162340860 tgagatgctcagggaggagcacgaggtggccgtgctgggggctccccagacctcagcccc 162340801

                                                                             
Query: 188       cgtggccaccacggtgatcaacatccgaagcgagacctccgtgcccgaccacgtcgtctg 247
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162340800 cgtggccaccacggtgatcaacatccgaagcgagacctccgtgcccgaccacgtcgtctg 162340741

                                                                             
Query: 248       gtccctgttcaacaccctcttcatgaactggtgctgcctgggcttcgtggctttcgccta 307
                 ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162340740 gtccctgttcaacgccctcttcatgaactggtgctgcctgggcttcgtggctttcgccta 162340681

                            
Query: 308       ctccgtgaagg 318
                 |||||||||||
Sbjct: 162340680 ctccgtgaagg 162340670



 Score =  281 bits (142), Expect = 3e-73
 Identities = 183/196 (93%), Gaps = 3/196 (1%)
 Strand = Plus / Plus

                                                                             
Query: 316       aggcgagggaccggaagatggtgggagacatcattggggcccagagctatgcctccaccg 375
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162096290 aggcgagggaccggaagatggtgggagacatcattggggcccagagctatgcctccaccg 162096349

                                                                             
Query: 376       ccaagtgcctgaacatctgggctctggtcctgggcatttttctgaccatcggagccgtcg 435
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162096350 ccaagtgcctgaacatctgggctctggtcctgggcatttttctgaccatcggagccgtcg 162096409

                                                                             
Query: 436       ctcttctggtgtttgcatgcatagcagtctatgagatggctttacaacatgcaaagagta 495
                 |||||||||||||||||| |||| ||| |||  | |||   ||| | |  ||||||||||
Sbjct: 162096410 ctcttctggtgtttgcatacataacagcctaccatatg---ttagagcgcgcaaagagta 162096466

                                 
Query: 496       acagaggctactagca 511
                 ||||||||||||||||
Sbjct: 162096467 acagaggctactagca 162096482



 Score =  274 bits (138), Expect = 8e-71
 Identities = 165/174 (94%)
 Strand = Plus / Minus

                                                                             
Query: 145       agcacgaggtggccgtgctgggggctccccagacctcagcccccgtggccaccacggtga 204
                 |||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162100273 agcacgagatggacgggctgggggctccccagacctcagcccccgtggccaccacggtga 162100214

                                                                             
Query: 205       tcaacatccgaagcgagacctccgtgcccgaccacgtcgtctggtccctgttcaacaccc 264
                 ||| |||||  || ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 162100213 tcaccatccccagggagacctccgtgcccgaccacatcgtctggtccctgttcaacaccc 162100154

                                                                       
Query: 265       tcttcatgaactggtgctgcctgggcttcgtggctttcgcctactccgtgaagg 318
                 ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162100153 tcttcctgaactggtgctgcctgggcttcgtggctttcgcctactccgtgaagg 162100100



 Score =  274 bits (138), Expect = 8e-71
 Identities = 165/174 (94%)
 Strand = Plus / Plus

                                                                             
Query: 145       agcacgaggtggccgtgctgggggctccccagacctcagcccccgtggccaccacggtga 204
                 |||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162333181 agcacgagatggacgggctgggggctccccagacctcagcccccgtggccaccacggtga 162333240

                                                                             
Query: 205       tcaacatccgaagcgagacctccgtgcccgaccacgtcgtctggtccctgttcaacaccc 264
                 ||| |||||  || ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 162333241 tcaccatccccagggagacctccgtgcccgaccacatcgtctggtccctgttcaacaccc 162333300

                                                                       
Query: 265       tcttcatgaactggtgctgcctgggcttcgtggctttcgcctactccgtgaagg 318
                 ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162333301 tcttcctgaactggtgctgcctgggcttcgtggctttcgcctactccgtgaagg 162333354



 Score =  230 bits (116), Expect = 1e-57
 Identities = 152/164 (92%)
 Strand = Plus / Minus

                                                                             
Query: 316       aggcgagggaccggaagatggtgggagacatcattggggcccagagctatgcctccaccg 375
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162102703 aggcgagggaccggaagatggtgggagacatcattggggcccagagctatgcctccaccg 162102644

                                                                             
Query: 376       ccaagtgcctgaacatctgggctctggtcctgggcatttttctgaccatcggagccgtcg 435
                 ||||||||||||||||||||||||||||||||||| |  |||||||||||||||||   |
Sbjct: 162102643 ccaagtgcctgaacatctgggctctggtcctgggcctcattctgaccatcggagccactg 162102584

                                                             
Query: 436       ctcttctggtgtttgcatgcatagcagtctatgagatggcttta 479
                  |||||||||||||| || ||| ||||  |||||||||||||||
Sbjct: 162102583 ttcttctggtgtttgtatacatggcagcatatgagatggcttta 162102540



 Score =  210 bits (106), Expect = 1e-51
 Identities = 174/196 (88%), Gaps = 3/196 (1%)
 Strand = Plus / Minus

                                                                             
Query: 316       aggcgagggaccggaagatggtgggagacatcattggggcccagagctatgcctccaccg 375
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162099479 aggcgagggaccggaagatggtgggagacatcattggggcccagagctatgcctccaccg 162099420

                                                                             
Query: 376       ccaagtgcctgaacatctgggctctggtcctgggcatttttctgaccatcggagccgtcg 435
                 |||||||||||||||||||||||||| |||||||| |  |||||||||||||||||   |
Sbjct: 162099419 ccaagtgcctgaacatctgggctctgatcctgggcctcattctgaccatcggagccactg 162099360

                                                                             
Query: 436       ctcttctggtgtttgcatgcatagcagtctatgagatggctttacaacatgcaaagagta 495
                  |||||||||||||| || |||| ||| |||  | |||   ||| | |  ||||||||||
Sbjct: 162099359 ttcttctggtgtttgtatacataacagcctaccatatg---ttagagcgcgcaaagagta 162099303

                                 
Query: 496       acagaggctactagca 511
                 ||||||||||||||||
Sbjct: 162099302 acagaggctactagca 162099287



 Score =  131 bits (66), Expect = 8e-28
 Identities = 78/82 (95%)
 Strand = Plus / Minus

                                                                             
Query: 234       gaccacgtcgtctggtccctgttcaacaccctcttcatgaactggtgctgcctgggcttc 293
                 ||||||||| ||||||| ||||||| |||||||||| |||||||||||||||||||||||
Sbjct: 162210286 gaccacgtcctctggtcgctgttcagcaccctcttcctgaactggtgctgcctgggcttc 162210227

                                       
Query: 294       gtggctttcgcctactccgtga 315
                 ||||||||||||||||||||||
Sbjct: 162210226 gtggctttcgcctactccgtga 162210205


>Sscrofa_Chr01 
||          Length = 315321322

 Score =  737 bits (372), Expect = 0.0
 Identities = 375/376 (99%)
 Strand = Plus / Plus

                                                                             
Query: 573       ttcctacaggacttgcaaccagggaggcacagattcaagtagcaagagtcccacgtgctc 632
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296331399 ttcctacaggacttgcaaccagggaggcacagattcaagtagcaagagtcccacgtgctc 296331458

                                                                             
Query: 633       tgaggaaagcagagaggcagggctggggaacacccaccaccaagaccttccagagaagtt 692
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296331459 tgaggaaagcagagaggcagggctggggaacacccaccaccaagaccttccagagaagtt 296331518

                                                                             
Query: 693       acaggctcgccttacagacgggggctggtgccagcagagggtcagtcactaggcatccgc 752
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296331519 acaggctcgccttacagacgggggctggtgccagcagagggtcagtcactaggcatccgc 296331578

                                                                             
Query: 753       agctgatcggttgccagacccgggtttccagggagggaagaaaccgagttccaggcggtc 812
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296331579 agctgatcggttgccagacccgggtttccagggagggaagaaaccgagttccaggcggtc 296331638

                                                                             
Query: 813       ccaggatggccagggtgtgagtcagttcatatccccggggcttcctggccccatttcagc 872
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296331639 ccaggatggccagggtgtgagtcagttcatatccccggggcttcctggccccatttcagc 296331698

                                                                             
Query: 873       ccctccggcgcatctgaaggggctgaaatgggtggacctccgtgtgtgcagagtcctcgt 932
                 ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296331699 ccctccggcgcgtctgaaggggctgaaatgggtggacctccgtgtgtgcagagtcctcgt 296331758

                                 
Query: 933       gggctccggctcggga 948
                 ||||||||||||||||
Sbjct: 296331759 gggctccggctcggga 296331774



 Score =  381 bits (192), Expect = e-103
 Identities = 195/196 (99%)
 Strand = Plus / Plus

                                                                             
Query: 316       aggcgagggaccggaagatggtgggagacatcattggggcccagagctatgcctccaccg 375
                 ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 296331142 aggcgagggaccggaagatggtgggagacatcactggggcccagagctatgcctccaccg 296331201

                                                                             
Query: 376       ccaagtgcctgaacatctgggctctggtcctgggcatttttctgaccatcggagccgtcg 435
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296331202 ccaagtgcctgaacatctgggctctggtcctgggcatttttctgaccatcggagccgtcg 296331261

                                                                             
Query: 436       ctcttctggtgtttgcatgcatagcagtctatgagatggctttacaacatgcaaagagta 495
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296331262 ctcttctggtgtttgcatgcatagcagtctatgagatggctttacaacatgcaaagagta 296331321

                                 
Query: 496       acagaggctactagca 511
                 ||||||||||||||||
Sbjct: 296331322 acagaggctactagca 296331337



 Score =  149 bits (75), Expect = 3e-33
 Identities = 156/183 (85%)
 Strand = Plus / Plus

                                                                             
Query: 136       tcaaggaggagcacgaggtggccgtgctgggggctccccagacctcagcccccgtggcca 195
                 ||||||||||||| |||||||||| | ||||| | ||| |    ||||| ||| || |||
Sbjct: 296330323 tcaaggaggagcaggaggtggccgagatggggccgcccgaaggttcagctcccatgacca 296330382

                                                                             
Query: 196       ccacggtgatcaacatccgaagcgagacctccgtgcccgaccacgtcgtctggtccctgt 255
                  ||||||||||| |||||  || |||||| ||   |  ||||||||||||||||| ||||
Sbjct: 296330383 gcacggtgatcaccatccccagggagaccccccaccgggaccacgtcgtctggtcgctgt 296330442

                                                                             
Query: 256       tcaacaccctcttcatgaactggtgctgcctgggcttcgtggctttcgcctactccgtga 315
                 ||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296330443 tcagcaccctcttcctgaactggtgctgcctgggcttcgtggctttcgcctactccgtga 296330502

                    
Query: 316       agg 318
                 |||
Sbjct: 296330503 agg 296330505


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 22,389,496
Number of extensions: 191
Number of successful extensions: 191
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 191
Number of HSP's successfully gapped: 19
Length of query: 948
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 927
Effective length of database: 2,808,413,156
Effective search space: 2603398995612
Effective search space used: 2603398995612
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)