Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002384
(948 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001071609.1| interferon induced transmembrane family memb... 207 1e-53
Alignment gi|NP_001071610.1| interferon-induced transmembrane protein 1 (... 205 5e-53
Alignment gi|XP_001253014.1| PREDICTED: interferon-induced transmembrane ... 201 8e-52
Alignment gi|NP_863657.1| interferon-induced transmembrane protein 3 (1-8... 201 1e-51
Alignment gi|NP_001071522.1| interferon induced transmembrane protein 2 (... 199 2e-51
Alignment gi|XP_002697369.1| PREDICTED: interferon induced transmembrane ... 197 9e-51
Alignment gi|XP_598998.1| PREDICTED: interferon induced transmembrane pro... 197 9e-51
Alignment gi|XP_869835.2| PREDICTED: interferon induced transmembrane pro... 144 9e-35
Alignment gi|XP_002684045.1| PREDICTED: interferon-induced transmembrane ... 141 7e-34
Alignment gi|XP_002707847.1| PREDICTED: inteferon-induced membrane protei... 140 2e-33
>ref|NP_001071609.1| interferon induced transmembrane family member [Bos taurus].
Length = 146
Score = 207 bits (527), Expect = 1e-53
Identities = 102/145 (70%), Positives = 118/145 (81%), Gaps = 1/145 (0%)
Frame = +3
Query: 72 MNCASQPFFTGAHGG-PPTYEMLKEEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVW 248
MN SQP FTGAHG PP YE+LKEEHEVAVLGAPQ+ AP+ TTVINIRS+T+VPDH+VW
Sbjct: 1 MNRTSQPLFTGAHGAVPPAYEVLKEEHEVAVLGAPQSQAPLTTTVINIRSDTAVPDHIVW 60
Query: 249 SLFNTLFMNWCCLGFVAFAYSVKARDRKMVGDIIGAQSYASTAKCLNIWALVLGIFLTIG 428
SLFNT+FMNWCCLGFVAFAYSVK+RDRKMVGDI GAQSYASTAKCLNI +LVLGI LT+
Sbjct: 61 SLFNTIFMNWCCLGFVAFAYSVKSRDRKMVGDITGAQSYASTAKCLNICSLVLGILLTVV 120
Query: 429 AVALLVFACIAVYEMALQHAKSNRG 503
+ L+ + + + A+ N G
Sbjct: 121 LIVLVSTGSLMIVQ-AVSELMQNYG 144
>ref|NP_001071610.1| interferon-induced transmembrane protein 1 (9-27) isoform 1 [Bos
taurus].
Length = 124
Score = 205 bits (521), Expect = 5e-53
Identities = 95/117 (81%), Positives = 109/117 (93%)
Frame = +3
Query: 132 MLKEEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWSLFNTLFMNWCCLGFVAFAYS 311
M+KEEHEVAVLGAPQ+ AP+ TTVINIRS+T+VPDH+VWSLFNT+F+NWCCLGFVAFAYS
Sbjct: 1 MIKEEHEVAVLGAPQSQAPLTTTVINIRSDTAVPDHIVWSLFNTIFLNWCCLGFVAFAYS 60
Query: 312 VKARDRKMVGDIIGAQSYASTAKCLNIWALVLGIFLTIGAVALLVFACIAVYEMALQ 482
VK+RDRKMVGDI GAQSYASTAKCLNIWALVLGIFLTIG++ LL+F +A YE AL+
Sbjct: 61 VKSRDRKMVGDITGAQSYASTAKCLNIWALVLGIFLTIGSIVLLIFVYMAAYETALR 117
>ref|XP_001253014.1| PREDICTED: interferon-induced transmembrane protein 3 (1-8U)-like
[Bos taurus].
Length = 146
Score = 201 bits (511), Expect = 8e-52
Identities = 100/145 (68%), Positives = 116/145 (80%), Gaps = 1/145 (0%)
Frame = +3
Query: 72 MNCASQPFFTGAHGG-PPTYEMLKEEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVW 248
MN SQ TGAHG PP YE+LKEEHEVAVLGAPQ+ AP+ TTVINIRS+T+VPDH+VW
Sbjct: 1 MNRTSQLLLTGAHGAVPPAYEVLKEEHEVAVLGAPQSQAPLTTTVINIRSDTAVPDHIVW 60
Query: 249 SLFNTLFMNWCCLGFVAFAYSVKARDRKMVGDIIGAQSYASTAKCLNIWALVLGIFLTIG 428
SLFNT+FMNWCCLGFVAFAYSVK+RDRKMVGDI GAQSYASTAKCLNI +LVLGI LT+
Sbjct: 61 SLFNTIFMNWCCLGFVAFAYSVKSRDRKMVGDITGAQSYASTAKCLNICSLVLGILLTVV 120
Query: 429 AVALLVFACIAVYEMALQHAKSNRG 503
+ L+ + + + A+ N G
Sbjct: 121 LIVLVSTGSLMIVQ-AVSELMQNYG 144
>ref|NP_863657.1| interferon-induced transmembrane protein 3 (1-8U) [Bos taurus].
Length = 146
Score = 201 bits (510), Expect = 1e-51
Identities = 97/125 (77%), Positives = 109/125 (87%), Gaps = 1/125 (0%)
Frame = +3
Query: 72 MNCASQPFFTGAHGG-PPTYEMLKEEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVW 248
MN SQ TGAHG PP YE+LKEEHEVAVLGAPQ+ AP+ TTVINIRS+T+VPDH+VW
Sbjct: 1 MNRTSQLLLTGAHGAVPPAYEVLKEEHEVAVLGAPQSQAPLTTTVINIRSDTAVPDHIVW 60
Query: 249 SLFNTLFMNWCCLGFVAFAYSVKARDRKMVGDIIGAQSYASTAKCLNIWALVLGIFLTIG 428
SLFNT+FMNWCCLGFVAFAYSVK+RDRKMVGDI GAQSYASTAKCLNI +LVLGI LT+
Sbjct: 61 SLFNTIFMNWCCLGFVAFAYSVKSRDRKMVGDITGAQSYASTAKCLNICSLVLGILLTVV 120
Query: 429 AVALL 443
+ L+
Sbjct: 121 LIVLV 125
>ref|NP_001071522.1| interferon induced transmembrane protein 2 (1-8D) [Bos taurus].
Length = 124
Score = 199 bits (507), Expect = 2e-51
Identities = 95/117 (81%), Positives = 106/117 (90%)
Frame = +3
Query: 132 MLKEEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWSLFNTLFMNWCCLGFVAFAYS 311
MLKEE+EVAVLGAPQ+ APV TTVINI E SVPDH+VWSLFNT+F+NWCCLGFVAFAYS
Sbjct: 1 MLKEENEVAVLGAPQSQAPVTTTVINIPRENSVPDHIVWSLFNTVFLNWCCLGFVAFAYS 60
Query: 312 VKARDRKMVGDIIGAQSYASTAKCLNIWALVLGIFLTIGAVALLVFACIAVYEMALQ 482
VK+RDRKMVGDI GAQSYASTAKCLNIWALVLGIFLTIG++ LL+F +A YE AL+
Sbjct: 61 VKSRDRKMVGDITGAQSYASTAKCLNIWALVLGIFLTIGSIVLLIFVYMAAYETALR 117
>ref|XP_002697369.1| PREDICTED: interferon induced transmembrane protein 3-like [Bos
taurus].
Length = 145
Score = 197 bits (502), Expect = 9e-51
Identities = 96/132 (72%), Positives = 109/132 (82%), Gaps = 1/132 (0%)
Frame = +3
Query: 72 MNCASQPFFTGAHGG-PPTYEMLKEEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVW 248
MNC SQP FTGAHG PP YE+LKEEHEVAVLG PQ+ APV TTVINI SETSVP+H+VW
Sbjct: 1 MNCTSQPLFTGAHGVVPPAYEVLKEEHEVAVLGVPQSQAPVTTTVINICSETSVPNHIVW 60
Query: 249 SLFNTLFMNWCCLGFVAFAYSVKARDRKMVGDIIGAQSYASTAKCLNIWALVLGIFLTIG 428
LFNT+FMNWCCLGFVAFAYSV++RDRKMVGDI GAQ Y STAKCLNI ALVLG+ L I
Sbjct: 61 FLFNTIFMNWCCLGFVAFAYSVESRDRKMVGDITGAQRYTSTAKCLNICALVLGLLLIIV 120
Query: 429 AVALLVFACIAV 464
+ + + + + V
Sbjct: 121 LIIMSIGSLMIV 132
>ref|XP_598998.1| PREDICTED: interferon induced transmembrane protein 3-like [Bos
taurus].
Length = 145
Score = 197 bits (502), Expect = 9e-51
Identities = 96/132 (72%), Positives = 109/132 (82%), Gaps = 1/132 (0%)
Frame = +3
Query: 72 MNCASQPFFTGAHGG-PPTYEMLKEEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVW 248
MNC SQP FTGAHG PP YE+LKEEHEVAVLG PQ+ APV TTVINI SETSVP+H+VW
Sbjct: 1 MNCTSQPLFTGAHGVVPPAYEVLKEEHEVAVLGVPQSQAPVTTTVINICSETSVPNHIVW 60
Query: 249 SLFNTLFMNWCCLGFVAFAYSVKARDRKMVGDIIGAQSYASTAKCLNIWALVLGIFLTIG 428
LFNT+FMNWCCLGFVAFAYSV++RDRKMVGDI GAQ Y STAKCLNI ALVLG+ L I
Sbjct: 61 FLFNTIFMNWCCLGFVAFAYSVESRDRKMVGDITGAQRYTSTAKCLNICALVLGLLLIIV 120
Query: 429 AVALLVFACIAV 464
+ + + + + V
Sbjct: 121 LIIMSIGSLMIV 132
>ref|XP_869835.2| PREDICTED: interferon induced transmembrane protein 2 (1-8D)-like
[Bos taurus].
Length = 238
Score = 144 bits (364), Expect = 9e-35
Identities = 69/108 (63%), Positives = 83/108 (76%)
Frame = +3
Query: 132 MLKEEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWSLFNTLFMNWCCLGFVAFAYS 311
M E EVAV+G P SAP+ VINI++E DH+VWSLFNTLFMN CCLGFVAF YS
Sbjct: 1 MFSGEQEVAVMGGPAGSAPMKNAVINIQTENPGRDHIVWSLFNTLFMNICCLGFVAFDYS 60
Query: 312 VKARDRKMVGDIIGAQSYASTAKCLNIWALVLGIFLTIGAVALLVFAC 455
V+++D+KMVGDI GAQS+ASTAKCLN+WALVLG+ LTI + + C
Sbjct: 61 VESKDQKMVGDITGAQSHASTAKCLNVWALVLGLLLTITFITVFGTGC 108
>ref|XP_002684045.1| PREDICTED: interferon-induced transmembrane protein 3 (1-8U)-like
[Bos taurus].
Length = 96
Score = 141 bits (356), Expect = 7e-34
Identities = 66/83 (79%), Positives = 73/83 (87%), Gaps = 1/83 (1%)
Frame = +3
Query: 72 MNCASQPFFTGAHGG-PPTYEMLKEEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVW 248
MN SQ TGAHG PP YE+LKEEHEVAVLGAPQ+ AP+ TTVINIRS+T+VPDH+VW
Sbjct: 1 MNRTSQLLLTGAHGAVPPAYEVLKEEHEVAVLGAPQSQAPLTTTVINIRSDTAVPDHIVW 60
Query: 249 SLFNTLFMNWCCLGFVAFAYSVK 317
SLFNT+FMNWCCLGFVAFAYSVK
Sbjct: 61 SLFNTIFMNWCCLGFVAFAYSVK 83
>ref|XP_002707847.1| PREDICTED: inteferon-induced membrane protein Leu-13/9-27-like [Bos
taurus].
Length = 214
Score = 140 bits (353), Expect = 2e-33
Identities = 68/108 (62%), Positives = 81/108 (75%)
Frame = +3
Query: 132 MLKEEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWSLFNTLFMNWCCLGFVAFAYS 311
M E EVAV G Q P+ VINI++E DH+VWSLFNTLFMN CCLGFVAFAYS
Sbjct: 1 MFSGEQEVAVTGDLQARXPMKNAVINIQTENPGRDHIVWSLFNTLFMNICCLGFVAFAYS 60
Query: 312 VKARDRKMVGDIIGAQSYASTAKCLNIWALVLGIFLTIGAVALLVFAC 455
V+++D+KMVGDI GAQS+ASTAKCLN+WALVLG+ LTI + + C
Sbjct: 61 VESKDQKMVGDITGAQSHASTAKCLNVWALVLGLLLTITFITVFGTGC 108
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 43,920,728
Number of extensions: 1533886
Number of successful extensions: 6396
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 6352
Number of HSP's successfully gapped: 15
Length of query: 316
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 214
Effective length of database: 14,306,398
Effective search space: 3061569172
Effective search space used: 3061569172
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002384
(948 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_533144.2| PREDICTED: similar to Interferon-induced transm... 170 2e-42
Alignment gi|XP_540516.1| PREDICTED: similar to Interferon-induced transm... 159 3e-39
Alignment gi|XP_540515.2| PREDICTED: similar to Interferon-induced transm... 152 6e-37
Alignment gi|XP_848464.1| PREDICTED: similar to IFITM5 [Canis familiaris]. 127 2e-29
Alignment gi|XP_848556.1| PREDICTED: similar to interferon induced transm... 95 8e-20
Alignment gi|XP_854310.1| PREDICTED: similar to Interferon-inducible prot... 77 2e-14
Alignment gi|XP_536539.2| PREDICTED: similar to olfactory receptor 973 [C... 72 6e-13
>ref|XP_533144.2| PREDICTED: similar to Interferon-induced transmembrane protein 3
(Interferon-inducible protein 1-8U) [Canis familiaris].
Length = 219
Score = 170 bits (431), Expect = 2e-42
Identities = 94/162 (58%), Positives = 112/162 (69%)
Frame = +3
Query: 21 QSTPAHPLSRPQLLLGTMNCASQPFFTGAHGGPPTYEMLKEEHEVAVLGAPQTSAPVATT 200
Q TP+ P SRP L T A FF G H EM+ +++V V GAP ++AP TT
Sbjct: 62 QPTPSLPSSRPHQLWATQPPAL--FFPG-HACASPREMM--QNKVDVRGAPLSTAPATTT 116
Query: 201 VINIRSETSVPDHVVWSLFNTLFMNWCCLGFVAFAYSVKARDRKMVGDIIGAQSYASTAK 380
VIN+ ET VPDHVVWSLFNT+F+NW CLGFVAF YSVKARDRKMVGD+ GAQS+ASTA+
Sbjct: 117 VINVPVETVVPDHVVWSLFNTIFLNWFCLGFVAFVYSVKARDRKMVGDLTGAQSFASTAR 176
Query: 381 CLNIWALVLGIFLTIGAVALLVFACIAVYEMALQHAKSNRGY 506
CLNIWALVLG+ LTI ++ LL A A Y LQ + + Y
Sbjct: 177 CLNIWALVLGLLLTIISIVLLGMAYAAAYGALLQAMQESGRY 218
>ref|XP_540516.1| PREDICTED: similar to Interferon-induced transmembrane protein 1
(Interferon-induced protein 17) (Interferon-inducible
protein 9-27) (Leu-13 antigen) (CD225 antigen) [Canis
familiaris].
Length = 126
Score = 159 bits (403), Expect = 3e-39
Identities = 80/125 (64%), Positives = 96/125 (76%)
Frame = +3
Query: 132 MLKEEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWSLFNTLFMNWCCLGFVAFAYS 311
M +++++V GAPQ+ PV TTVINIRS+T VPDH+VWSLFNT+FMNWCCLG VAFAYS
Sbjct: 1 MDQDQYKVPETGAPQSMVPVTTTVINIRSDTVVPDHIVWSLFNTVFMNWCCLGIVAFAYS 60
Query: 312 VKARDRKMVGDIIGAQSYASTAKCLNIWALVLGIFLTIGAVALLVFACIAVYEMALQHAK 491
VKARDRKMVGD+ GAQS+ASTA+CLNI ALV+GI L I ++ LL A A Y LQ +
Sbjct: 61 VKARDRKMVGDLTGAQSFASTARCLNISALVVGIILGIISIVLLRIAFGAAYWALLQVMQ 120
Query: 492 SNRGY 506
Y
Sbjct: 121 ERSRY 125
>ref|XP_540515.2| PREDICTED: similar to Interferon-induced transmembrane protein 3
(Interferon-inducible protein 1-8U) [Canis familiaris].
Length = 165
Score = 152 bits (383), Expect = 6e-37
Identities = 90/159 (56%), Positives = 106/159 (66%)
Frame = +3
Query: 30 PAHPLSRPQLLLGTMNCASQPFFTGAHGGPPTYEMLKEEHEVAVLGAPQTSAPVATTVIN 209
PA P SRP LL T A FF G H EM+ +++V V GA ++AP TTVIN
Sbjct: 15 PALPSSRPHLLGATWPPAL--FFPG-HACASPREMM--QNKVDVRGALLSTAPATTTVIN 69
Query: 210 IRSETSVPDHVVWSLFNTLFMNWCCLGFVAFAYSVKARDRKMVGDIIGAQSYASTAKCLN 389
+ ET VPDHVVWSLFNT+F+N CLGFVAF YSVKARDRKMVGD+ GAQS+ASTA+CLN
Sbjct: 70 VPEETVVPDHVVWSLFNTIFLNSFCLGFVAFVYSVKARDRKMVGDLTGAQSFASTARCLN 129
Query: 390 IWALVLGIFLTIGAVALLVFACIAVYEMALQHAKSNRGY 506
IWALVLGI ++ LL A A Y LQ + + Y
Sbjct: 130 IWALVLGII----SIVLLGMAYAAAYGALLQVMQESGRY 164
>ref|XP_848464.1| PREDICTED: similar to IFITM5 [Canis familiaris].
Length = 136
Score = 127 bits (318), Expect = 2e-29
Identities = 69/140 (49%), Positives = 86/140 (61%), Gaps = 1/140 (0%)
Frame = +3
Query: 72 MNCASQPFFTGAHG-GPPTYEMLKEEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVW 248
M+ A +P GA GPPTYEMLKEEHEV VLG+ VPDHVVW
Sbjct: 1 MSRAPRPLLPGARAAGPPTYEMLKEEHEVVVLGSGL-----------------VPDHVVW 43
Query: 249 SLFNTLFMNWCCLGFVAFAYSVKARDRKMVGDIIGAQSYASTAKCLNIWALVLGIFLTIG 428
SLFNT+FMNWCCLGFVAFAYS KARD+K+ GD+ A+ + S AKC NI A + + +
Sbjct: 44 SLFNTVFMNWCCLGFVAFAYSEKARDQKVAGDLEAARRFGSKAKCYNILATMWALVPPLL 103
Query: 429 AVALLVFACIAVYEMALQHA 488
+AL+V + + +A A
Sbjct: 104 LLALVVTGALHLSRLAKDSA 123
>ref|XP_848556.1| PREDICTED: similar to interferon induced transmembrane protein 1
(9-27) [Canis familiaris].
Length = 79
Score = 95.1 bits (235), Expect = 8e-20
Identities = 44/78 (56%), Positives = 56/78 (71%)
Frame = +3
Query: 270 MNWCCLGFVAFAYSVKARDRKMVGDIIGAQSYASTAKCLNIWALVLGIFLTIGAVALLVF 449
MNWC GF+AF+YSVK RDRKM GD+ GAQS+ASTA+CLNIWALVLG+ LT+ V L+
Sbjct: 1 MNWCGRGFMAFSYSVKTRDRKMAGDLTGAQSFASTARCLNIWALVLGLLLTVTFVILVST 60
Query: 450 ACIAVYEMALQHAKSNRG 503
+ ++E + K G
Sbjct: 61 GSLVIFETVSEMVKHYGG 78
>ref|XP_854310.1| PREDICTED: similar to Interferon-inducible protein [Canis
familiaris].
Length = 274
Score = 77.0 bits (188), Expect = 2e-14
Identities = 50/150 (33%), Positives = 72/150 (48%), Gaps = 24/150 (16%)
Frame = +3
Query: 30 PAHPLSRPQLLLGTMNCASQPFFTGAHGGP---------------PTYEMLKEEHEVAVL 164
P P P+ G C S+P A P P + V
Sbjct: 109 PRPPAGSPK---GCFACVSKPPALQAPAAPAPEPSASPPMAPTLFPMESKSSKTDSVRAS 165
Query: 165 GAPQTSAPVA--------TTVINIRSETS-VPDHVVWSLFNTLFMNWCCLGFVAFAYSVK 317
GAPQ +A TTVI + +T+ V D+ +WS+FN +++N+CCLGF+A AYS+K
Sbjct: 166 GAPQACKHLAEKKTMTNPTTVIEVYPDTTEVNDYYLWSIFNFVYLNFCCLGFIALAYSLK 225
Query: 318 ARDRKMVGDIIGAQSYASTAKCLNIWALVL 407
RD+K++ D+ GA A TA+ NI + L
Sbjct: 226 VRDKKLLNDLNGAVEDAKTARLFNITSSAL 255
>ref|XP_536539.2| PREDICTED: similar to olfactory receptor 973 [Canis familiaris].
Length = 370
Score = 72.4 bits (176), Expect = 6e-13
Identities = 28/37 (75%), Positives = 34/37 (91%)
Frame = +3
Query: 228 VPDHVVWSLFNTLFMNWCCLGFVAFAYSVKARDRKMV 338
+PDH+ WSLFNT+F+NWCCLGF AFAYSVK+R RK+V
Sbjct: 1 MPDHIFWSLFNTIFLNWCCLGFAAFAYSVKSRGRKLV 37
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 45,762,956
Number of extensions: 1572679
Number of successful extensions: 6468
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 6432
Number of HSP's successfully gapped: 7
Length of query: 316
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 213
Effective length of database: 15,440,896
Effective search space: 3288910848
Effective search space used: 3288910848
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002384
(948 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_003632.3| interferon-induced transmembrane protein 1 [Hom... 192 3e-49
Alignment gi|NP_066362.2| interferon-induced transmembrane protein 3 [Hom... 189 3e-48
Alignment gi|NP_006426.2| interferon-induced transmembrane protein 2 [Hom... 183 2e-46
Alignment gi|NP_001020466.1| interferon-induced transmembrane protein 5 [... 85 1e-16
Alignment gi|NP_001164291.2| interferon-induced transmembrane protein 10 ... 75 7e-14
>ref|NP_003632.3| interferon-induced transmembrane protein 1 [Homo sapiens].
Length = 125
Score = 192 bits (489), Expect = 3e-49
Identities = 91/125 (72%), Positives = 105/125 (84%)
Frame = +3
Query: 132 MLKEEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWSLFNTLFMNWCCLGFVAFAYS 311
M KEEHEVAVLGAP ++ +TVINI SETSVPDHVVWSLFNTLF+NWCCLGF+AFAYS
Sbjct: 1 MHKEEHEVAVLGAPPSTILPRSTVINIHSETSVPDHVVWSLFNTLFLNWCCLGFIAFAYS 60
Query: 312 VKARDRKMVGDIIGAQSYASTAKCLNIWALVLGIFLTIGAVALLVFACIAVYEMALQHAK 491
VK+RDRKMVGD+ GAQ+YASTAKCLNIWAL+LGI +TIG + LLVF + VY + LQ +
Sbjct: 61 VKSRDRKMVGDVTGAQAYASTAKCLNIWALILGILMTIGFILLLVFGSVTVYHIMLQIIQ 120
Query: 492 SNRGY 506
RGY
Sbjct: 121 EKRGY 125
>ref|NP_066362.2| interferon-induced transmembrane protein 3 [Homo sapiens].
Length = 133
Score = 189 bits (480), Expect = 3e-48
Identities = 93/126 (73%), Positives = 105/126 (83%), Gaps = 1/126 (0%)
Frame = +3
Query: 72 MNCASQPFFTGAHGG-PPTYEMLKEEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVW 248
MN Q FF+ + G PP YEMLKEEHEVAVLGAP AP +TVI+IRSETSVPDHVVW
Sbjct: 1 MNHTVQTFFSPVNSGQPPNYEMLKEEHEVAVLGAPHNPAPPTSTVIHIRSETSVPDHVVW 60
Query: 249 SLFNTLFMNWCCLGFVAFAYSVKARDRKMVGDIIGAQSYASTAKCLNIWALVLGIFLTIG 428
SLFNTLFMN CCLGF+AFAYSVK+RDRKMVGD+ GAQ+YASTAKCLNIWAL+LGI +TI
Sbjct: 61 SLFNTLFMNPCCLGFIAFAYSVKSRDRKMVGDVTGAQAYASTAKCLNIWALILGILMTIL 120
Query: 429 AVALLV 446
+ + V
Sbjct: 121 LIVIPV 126
>ref|NP_006426.2| interferon-induced transmembrane protein 2 [Homo sapiens].
Length = 132
Score = 183 bits (465), Expect = 2e-46
Identities = 89/118 (75%), Positives = 98/118 (83%)
Frame = +3
Query: 72 MNCASQPFFTGAHGGPPTYEMLKEEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWS 251
MN Q F G PP YEMLKEE EVA+LG P AP +TVI+IRSETSVPDHVVWS
Sbjct: 1 MNHIVQTFSPVNSGQPPNYEMLKEEQEVAMLGVPHNPAPPMSTVIHIRSETSVPDHVVWS 60
Query: 252 LFNTLFMNWCCLGFVAFAYSVKARDRKMVGDIIGAQSYASTAKCLNIWALVLGIFLTI 425
LFNTLFMN CCLGF+AFAYSVK+RDRKMVGD+ GAQ+YASTAKCLNIWAL+LGIF+TI
Sbjct: 61 LFNTLFMNTCCLGFIAFAYSVKSRDRKMVGDVTGAQAYASTAKCLNIWALILGIFMTI 118
>ref|NP_001020466.1| interferon-induced transmembrane protein 5 [Homo sapiens].
Length = 132
Score = 84.7 bits (208), Expect = 1e-16
Identities = 47/101 (46%), Positives = 66/101 (65%), Gaps = 10/101 (9%)
Frame = +3
Query: 168 APQTSAPVATTVINIRSETSVP-DHVVWSLFNTLFMNWCCLGFVAFAYSVKARDRKMVGD 344
AP S A T + + + P DH++WS+F+TL++N CCLGF+A AYS+KARD+K+VGD
Sbjct: 12 APTPSKAGAHTALTLGAPHPPPRDHLIWSVFSTLYLNLCCLGFLALAYSIKARDQKVVGD 71
Query: 345 IIGAQSYASTAKCLNI----WALV-----LGIFLTIGAVAL 440
+ A+ + S AKC NI W LV LG+ +T GA+ L
Sbjct: 72 LEAARRFGSKAKCYNILAAMWTLVPPLLLLGLVVT-GALHL 111
>ref|NP_001164291.2| interferon-induced transmembrane protein 10 [Homo sapiens].
Length = 228
Score = 75.5 bits (184), Expect = 7e-14
Identities = 40/102 (39%), Positives = 61/102 (59%), Gaps = 1/102 (0%)
Frame = +3
Query: 105 AHGGPPTYEMLKEEHEVAVLGAPQTSAPVATTVINIRSETS-VPDHVVWSLFNTLFMNWC 281
A G PP + L E+ + TTVI + +T+ V D+ +WS+FN +++N+C
Sbjct: 118 AAGAPPACKHLAEKKTMTN----------PTTVIEVYPDTTEVNDYYLWSIFNFVYLNFC 167
Query: 282 CLGFVAFAYSVKARDRKMVGDIIGAQSYASTAKCLNIWALVL 407
CLGF+A AYS+K RD+K++ D+ GA A TA+ NI + L
Sbjct: 168 CLGFIALAYSLKVRDKKLLNDLNGAVEDAKTARLFNITSSAL 209
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 44,801,964
Number of extensions: 1537291
Number of successful extensions: 6220
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 6177
Number of HSP's successfully gapped: 5
Length of query: 316
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 214
Effective length of database: 14,934,836
Effective search space: 3196054904
Effective search space used: 3196054904
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002384
(948 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_079654.1| interferon-induced transmembrane protein 3 [Mus... 171 6e-43
Alignment gi|XP_910503.1| PREDICTED: interferon-induced transmembrane pro... 160 1e-39
Alignment gi|NP_109619.1| interferon-induced transmembrane protein 2 [Mus... 160 2e-39
Alignment gi|XP_357752.4| PREDICTED: interferon-induced transmembrane pro... 144 8e-35
Alignment gi|XP_920076.2| PREDICTED: interferon-induced transmembrane pro... 144 8e-35
Alignment gi|NP_083244.1| interferon induced transmembrane protein 7 [Mus... 132 3e-31
Alignment gi|NP_001106186.1| interferon-induced transmembrane protein 1 [... 131 9e-31
Alignment gi|NP_081096.3| interferon-induced transmembrane protein 1 [Mus... 131 9e-31
Alignment gi|NP_001028804.1| interferon induced transmembrane protein 6 [... 115 4e-26
Alignment gi|NP_444318.1| interferon-induced transmembrane protein 5 [Mus... 78 9e-15
>ref|NP_079654.1| interferon-induced transmembrane protein 3 [Mus musculus].
Length = 137
Score = 171 bits (434), Expect = 6e-43
Identities = 84/126 (66%), Positives = 99/126 (78%), Gaps = 1/126 (0%)
Frame = +3
Query: 72 MNCASQPFFTGAHGG-PPTYEMLKEEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVW 248
MN SQ F T A GG PP YE +KEE+EVA +GAP SA V TTVIN+ E SVPDHVVW
Sbjct: 1 MNHTSQAFITAASGGQPPNYERIKEEYEVAEMGAPHGSASVRTTVINMPREVSVPDHVVW 60
Query: 249 SLFNTLFMNWCCLGFVAFAYSVKARDRKMVGDIIGAQSYASTAKCLNIWALVLGIFLTIG 428
SLFNTLFMN+CCLGF+A+AYSVK+RDRKMVGD+ GAQ+YASTAKCLNI LVL I + +
Sbjct: 61 SLFNTLFMNFCCLGFIAYAYSVKSRDRKMVGDVTGAQAYASTAKCLNISTLVLSILMVVI 120
Query: 429 AVALLV 446
+ ++
Sbjct: 121 TIVSVI 126
>ref|XP_910503.1| PREDICTED: interferon-induced transmembrane protein 3-like [Mus
musculus].
Length = 144
Score = 160 bits (405), Expect = 1e-39
Identities = 78/137 (56%), Positives = 98/137 (71%)
Frame = +3
Query: 72 MNCASQPFFTGAHGGPPTYEMLKEEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWS 251
M+ SQ F + G PP+YE +KEE+ V LG P SA V TTVIN+ E SVPDHVVWS
Sbjct: 1 MSHNSQAFLSTNAGLPPSYETIKEEYRVTELGEPSNSAVVRTTVINMPREVSVPDHVVWS 60
Query: 252 LFNTLFMNWCCLGFVAFAYSVKARDRKMVGDIIGAQSYASTAKCLNIWALVLGIFLTIGA 431
LFNTLF N CCLGF+A+AYSVK+RDRKMVGD++GAQ+YASTAKCLNI +L+ I + I
Sbjct: 61 LFNTLFFNACCLGFIAYAYSVKSRDRKMVGDVVGAQAYASTAKCLNISSLIFSILMVIIC 120
Query: 432 VALLVFACIAVYEMALQ 482
+ + + V++ Q
Sbjct: 121 IIIFSTTSVVVFQSFAQ 137
>ref|NP_109619.1| interferon-induced transmembrane protein 2 [Mus musculus].
Length = 144
Score = 160 bits (404), Expect = 2e-39
Identities = 79/137 (57%), Positives = 98/137 (71%)
Frame = +3
Query: 72 MNCASQPFFTGAHGGPPTYEMLKEEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWS 251
M+ SQ F + G PP+YE +KEE+ V LG P SA V TTVIN+ E SVPDHVVWS
Sbjct: 1 MSHNSQAFLSTNAGLPPSYETIKEEYGVTELGEPSNSAVVRTTVINMPREVSVPDHVVWS 60
Query: 252 LFNTLFMNWCCLGFVAFAYSVKARDRKMVGDIIGAQSYASTAKCLNIWALVLGIFLTIGA 431
LFNTLF N CCLGFVA+AYSVK+RDRKMVGD++GAQ+YASTAKCLNI +L+ I + I
Sbjct: 61 LFNTLFFNACCLGFVAYAYSVKSRDRKMVGDVVGAQAYASTAKCLNISSLIFSILMVIIC 120
Query: 432 VALLVFACIAVYEMALQ 482
+ + + V++ Q
Sbjct: 121 IIIFSTTSVVVFQSFAQ 137
>ref|XP_357752.4| PREDICTED: interferon-induced transmembrane protein 3-like [Mus
musculus].
Length = 211
Score = 144 bits (364), Expect = 8e-35
Identities = 76/145 (52%), Positives = 96/145 (66%), Gaps = 3/145 (2%)
Frame = +3
Query: 72 MNCASQPFFTGAHGGPPTYEMLKEEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWS 251
M+ SQ F G PP+YE +KEE+ V LG P SA V TTVIN+ E SVPDHV WS
Sbjct: 1 MSHNSQAFLPTNAGLPPSYETIKEEYGVTELGEPNNSAAVRTTVINMPREVSVPDHVAWS 60
Query: 252 LFNTLFMNWCCLGFVAFAYSVKARDRKMVGDIIGAQSYASTAKCLNIWALVLGIFLTIGA 431
LF+TLF N CCLGF A+AYS RDRKMVGD+IGAQ++ASTAKCLNI +L+ I + I
Sbjct: 61 LFSTLFFNACCLGFAAYAYS---RDRKMVGDVIGAQAHASTAKCLNISSLIFSILMVIIC 117
Query: 432 VALLVFACIAVYEMALQ---HAKSN 497
+ + + V++ Q H+K +
Sbjct: 118 IIIFSITSVVVFQSFSQRTPHSKDS 142
>ref|XP_920076.2| PREDICTED: interferon-induced transmembrane protein 3-like [Mus
musculus].
Length = 211
Score = 144 bits (364), Expect = 8e-35
Identities = 76/145 (52%), Positives = 96/145 (66%), Gaps = 3/145 (2%)
Frame = +3
Query: 72 MNCASQPFFTGAHGGPPTYEMLKEEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWS 251
M+ SQ F G PP+YE +KEE+ V LG P SA V TTVIN+ E SVPDHV WS
Sbjct: 1 MSHNSQAFLPTNAGLPPSYETIKEEYGVTELGEPNNSAAVRTTVINMPREVSVPDHVAWS 60
Query: 252 LFNTLFMNWCCLGFVAFAYSVKARDRKMVGDIIGAQSYASTAKCLNIWALVLGIFLTIGA 431
LF+TLF N CCLGF A+AYS RDRKMVGD+IGAQ++ASTAKCLNI +L+ I + I
Sbjct: 61 LFSTLFFNACCLGFAAYAYS---RDRKMVGDVIGAQAHASTAKCLNISSLIFSILMVIIC 117
Query: 432 VALLVFACIAVYEMALQ---HAKSN 497
+ + + V++ Q H+K +
Sbjct: 118 IIIFSITSVVVFQSFSQRTPHSKDS 142
>ref|NP_083244.1| interferon induced transmembrane protein 7 [Mus musculus].
Length = 107
Score = 132 bits (333), Expect = 3e-31
Identities = 62/98 (63%), Positives = 79/98 (80%)
Frame = +3
Query: 132 MLKEEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWSLFNTLFMNWCCLGFVAFAYS 311
M K++HEV V+G P TS TT+I + E S PD+VVWSLFNTLFMN+CCLGF+A+AYS
Sbjct: 1 MPKDQHEVVVMGTPHTSTSSTTTIITM-PEISKPDYVVWSLFNTLFMNFCCLGFIAYAYS 59
Query: 312 VKARDRKMVGDIIGAQSYASTAKCLNIWALVLGIFLTI 425
VK+RDRKMVGD+ GAQ++ASTA+CLNI L+L + + I
Sbjct: 60 VKSRDRKMVGDMTGAQAFASTARCLNISCLILSVVMVI 97
>ref|NP_001106186.1| interferon-induced transmembrane protein 1 [Mus musculus].
Length = 106
Score = 131 bits (329), Expect = 9e-31
Identities = 67/108 (62%), Positives = 79/108 (73%)
Frame = +3
Query: 132 MLKEEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWSLFNTLFMNWCCLGFVAFAYS 311
M KE+ EV VLG+P S T IN+ E S PDHVVWSLFNTLFMN+CCLGFVA+AYS
Sbjct: 1 MPKEQQEVVVLGSPHISTSATATTINM-PEISTPDHVVWSLFNTLFMNFCCLGFVAYAYS 59
Query: 312 VKARDRKMVGDIIGAQSYASTAKCLNIWALVLGIFLTIGAVALLVFAC 455
VK+RDRKMVGD GAQ++ASTAKCLNI +L F TI +++ C
Sbjct: 60 VKSRDRKMVGDTTGAQAFASTAKCLNISSL----FFTILTAIVVIVVC 103
>ref|NP_081096.3| interferon-induced transmembrane protein 1 [Mus musculus].
Length = 106
Score = 131 bits (329), Expect = 9e-31
Identities = 67/108 (62%), Positives = 79/108 (73%)
Frame = +3
Query: 132 MLKEEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWSLFNTLFMNWCCLGFVAFAYS 311
M KE+ EV VLG+P S T IN+ E S PDHVVWSLFNTLFMN+CCLGFVA+AYS
Sbjct: 1 MPKEQQEVVVLGSPHISTSATATTINM-PEISTPDHVVWSLFNTLFMNFCCLGFVAYAYS 59
Query: 312 VKARDRKMVGDIIGAQSYASTAKCLNIWALVLGIFLTIGAVALLVFAC 455
VK+RDRKMVGD GAQ++ASTAKCLNI +L F TI +++ C
Sbjct: 60 VKSRDRKMVGDTTGAQAFASTAKCLNISSL----FFTILTAIVVIVVC 103
>ref|NP_001028804.1| interferon induced transmembrane protein 6 [Mus musculus].
Length = 104
Score = 115 bits (289), Expect = 4e-26
Identities = 55/90 (61%), Positives = 68/90 (75%)
Frame = +3
Query: 180 SAPVATTVINIRSETSVPDHVVWSLFNTLFMNWCCLGFVAFAYSVKARDRKMVGDIIGAQ 359
SAPV +TV+ I S+ PDH+ WS FNT+FMN CCLGF+A+ YSVK+RDRKMVGD+ GAQ
Sbjct: 8 SAPVPSTVVCINSDVIQPDHITWSTFNTVFMNGCCLGFIAYIYSVKSRDRKMVGDMTGAQ 67
Query: 360 SYASTAKCLNIWALVLGIFLTIGAVALLVF 449
S+ASTAK LNI ALV+ + I + L F
Sbjct: 68 SHASTAKILNILALVISLIFYIMLIVLYSF 97
>ref|NP_444318.1| interferon-induced transmembrane protein 5 [Mus musculus].
Length = 134
Score = 78.2 bits (191), Expect = 9e-15
Identities = 38/100 (38%), Positives = 64/100 (64%), Gaps = 1/100 (1%)
Frame = +3
Query: 192 ATTVINIRSETSVP-DHVVWSLFNTLFMNWCCLGFVAFAYSVKARDRKMVGDIIGAQSYA 368
A T +++ + P DH++WS+F+T+++N CCLGF+A +SVKARD+KM G++ A+ Y
Sbjct: 22 AHTALSMGTPGPTPRDHMLWSVFSTMYLNLCCLGFLALVHSVKARDQKMAGNLEAARQYG 81
Query: 369 STAKCLNIWALVLGIFLTIGAVALLVFACIAVYEMALQHA 488
S AKC NI A + + + + L+V + + ++A A
Sbjct: 82 SKAKCYNILAAMWTLVPPLLLLGLVVTGALHLSKLAKDSA 121
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 37,552,539
Number of extensions: 1256634
Number of successful extensions: 4900
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 4857
Number of HSP's successfully gapped: 11
Length of query: 316
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 215
Effective length of database: 12,583,923
Effective search space: 2705543445
Effective search space used: 2705543445
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002384
(948 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001188311.1| interferon-induced transmembrane protein 3 [... 252 2e-67
Alignment gi|XP_003354459.1| PREDICTED: interferon-induced transmembrane ... 249 2e-66
Alignment gi|XP_003354458.1| PREDICTED: interferon-induced transmembrane ... 249 2e-66
Alignment gi|XP_003354457.1| PREDICTED: interferon-induced transmembrane ... 249 2e-66
Alignment gi|XP_003354456.1| PREDICTED: interferon-induced transmembrane ... 249 2e-66
Alignment gi|XP_003354463.1| PREDICTED: interferon-induced transmembrane ... 247 6e-66
Alignment gi|XP_003124283.1| PREDICTED: interferon-induced transmembrane ... 229 1e-60
Alignment gi|XP_003353695.1| PREDICTED: interferon-induced transmembrane ... 215 2e-56
Alignment gi|XP_003124278.1| PREDICTED: interferon-induced transmembrane ... 206 2e-53
Alignment gi|XP_003354470.1| PREDICTED: interferon-induced transmembrane ... 176 2e-44
>ref|NP_001188311.1| interferon-induced transmembrane protein 3 [Sus scrofa].
Length = 145
Score = 252 bits (644), Expect = 2e-67
Identities = 121/145 (83%), Positives = 128/145 (88%)
Frame = +3
Query: 72 MNCASQPFFTGAHGGPPTYEMLKEEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWS 251
MNCASQPFFTGAHGGPPTYEMLKEEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWS
Sbjct: 1 MNCASQPFFTGAHGGPPTYEMLKEEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWS 60
Query: 252 LFNTLFMNWCCLGFVAFAYSVKARDRKMVGDIIGAQSYASTAKCLNIWALVLGIFLTIGA 431
LFNTLFMNWCCLGFVAFAYSVKARDRKMVGDIIGAQSYASTAKCLNIWALVLG+ L I
Sbjct: 61 LFNTLFMNWCCLGFVAFAYSVKARDRKMVGDIIGAQSYASTAKCLNIWALVLGLLLIIAF 120
Query: 432 VALLVFACIAVYEMALQHAKSNRGY 506
+ + + +++ LQ K RGY
Sbjct: 121 IIVCTTGSLVIFQAVLQLIKDYRGY 145
>ref|XP_003354459.1| PREDICTED: interferon-induced transmembrane protein 1-like isoform
4 [Sus scrofa].
Length = 125
Score = 249 bits (636), Expect = 2e-66
Identities = 123/125 (98%), Positives = 124/125 (99%)
Frame = +3
Query: 132 MLKEEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWSLFNTLFMNWCCLGFVAFAYS 311
ML+EEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWSLFN LFMNWCCLGFVAFAYS
Sbjct: 1 MLREEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWSLFNALFMNWCCLGFVAFAYS 60
Query: 312 VKARDRKMVGDIIGAQSYASTAKCLNIWALVLGIFLTIGAVALLVFACIAVYEMALQHAK 491
VKARDRKMVGDIIGAQSYASTAKCLNIWALVLGIFLTIGAVALLVFACIAVYEMALQHAK
Sbjct: 61 VKARDRKMVGDIIGAQSYASTAKCLNIWALVLGIFLTIGAVALLVFACIAVYEMALQHAK 120
Query: 492 SNRGY 506
SNRGY
Sbjct: 121 SNRGY 125
>ref|XP_003354458.1| PREDICTED: interferon-induced transmembrane protein 1-like isoform
3 [Sus scrofa].
Length = 125
Score = 249 bits (636), Expect = 2e-66
Identities = 123/125 (98%), Positives = 124/125 (99%)
Frame = +3
Query: 132 MLKEEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWSLFNTLFMNWCCLGFVAFAYS 311
ML+EEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWSLFN LFMNWCCLGFVAFAYS
Sbjct: 1 MLREEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWSLFNALFMNWCCLGFVAFAYS 60
Query: 312 VKARDRKMVGDIIGAQSYASTAKCLNIWALVLGIFLTIGAVALLVFACIAVYEMALQHAK 491
VKARDRKMVGDIIGAQSYASTAKCLNIWALVLGIFLTIGAVALLVFACIAVYEMALQHAK
Sbjct: 61 VKARDRKMVGDIIGAQSYASTAKCLNIWALVLGIFLTIGAVALLVFACIAVYEMALQHAK 120
Query: 492 SNRGY 506
SNRGY
Sbjct: 121 SNRGY 125
>ref|XP_003354457.1| PREDICTED: interferon-induced transmembrane protein 1-like isoform
2 [Sus scrofa].
Length = 125
Score = 249 bits (636), Expect = 2e-66
Identities = 123/125 (98%), Positives = 124/125 (99%)
Frame = +3
Query: 132 MLKEEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWSLFNTLFMNWCCLGFVAFAYS 311
ML+EEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWSLFN LFMNWCCLGFVAFAYS
Sbjct: 1 MLREEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWSLFNALFMNWCCLGFVAFAYS 60
Query: 312 VKARDRKMVGDIIGAQSYASTAKCLNIWALVLGIFLTIGAVALLVFACIAVYEMALQHAK 491
VKARDRKMVGDIIGAQSYASTAKCLNIWALVLGIFLTIGAVALLVFACIAVYEMALQHAK
Sbjct: 61 VKARDRKMVGDIIGAQSYASTAKCLNIWALVLGIFLTIGAVALLVFACIAVYEMALQHAK 120
Query: 492 SNRGY 506
SNRGY
Sbjct: 121 SNRGY 125
>ref|XP_003354456.1| PREDICTED: interferon-induced transmembrane protein 1-like isoform
1 [Sus scrofa].
Length = 125
Score = 249 bits (636), Expect = 2e-66
Identities = 123/125 (98%), Positives = 124/125 (99%)
Frame = +3
Query: 132 MLKEEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWSLFNTLFMNWCCLGFVAFAYS 311
ML+EEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWSLFN LFMNWCCLGFVAFAYS
Sbjct: 1 MLREEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWSLFNALFMNWCCLGFVAFAYS 60
Query: 312 VKARDRKMVGDIIGAQSYASTAKCLNIWALVLGIFLTIGAVALLVFACIAVYEMALQHAK 491
VKARDRKMVGDIIGAQSYASTAKCLNIWALVLGIFLTIGAVALLVFACIAVYEMALQHAK
Sbjct: 61 VKARDRKMVGDIIGAQSYASTAKCLNIWALVLGIFLTIGAVALLVFACIAVYEMALQHAK 120
Query: 492 SNRGY 506
SNRGY
Sbjct: 121 SNRGY 125
>ref|XP_003354463.1| PREDICTED: interferon-induced transmembrane protein 1-like [Sus
scrofa].
Length = 125
Score = 247 bits (631), Expect = 6e-66
Identities = 122/125 (97%), Positives = 123/125 (98%)
Frame = +3
Query: 132 MLKEEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWSLFNTLFMNWCCLGFVAFAYS 311
ML+EEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWSLFN LFMNWCCLGFVAFAYS
Sbjct: 1 MLREEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWSLFNALFMNWCCLGFVAFAYS 60
Query: 312 VKARDRKMVGDIIGAQSYASTAKCLNIWALVLGIFLTIGAVALLVFACIAVYEMALQHAK 491
VKARDRKMVGDI GAQSYASTAKCLNIWALVLGIFLTIGAVALLVFACIAVYEMALQHAK
Sbjct: 61 VKARDRKMVGDITGAQSYASTAKCLNIWALVLGIFLTIGAVALLVFACIAVYEMALQHAK 120
Query: 492 SNRGY 506
SNRGY
Sbjct: 121 SNRGY 125
>ref|XP_003124283.1| PREDICTED: interferon-induced transmembrane protein 1-like [Sus
scrofa].
Length = 124
Score = 229 bits (585), Expect = 1e-60
Identities = 116/125 (92%), Positives = 118/125 (94%)
Frame = +3
Query: 132 MLKEEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWSLFNTLFMNWCCLGFVAFAYS 311
ML+EEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWSLFN LFMNWCCLGFVAFAYS
Sbjct: 1 MLREEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWSLFNALFMNWCCLGFVAFAYS 60
Query: 312 VKARDRKMVGDIIGAQSYASTAKCLNIWALVLGIFLTIGAVALLVFACIAVYEMALQHAK 491
VKARDRKMVGDIIGAQSYASTAKCLNIWALVLGIFLTIGAVALLVFA I Y M L+ AK
Sbjct: 61 VKARDRKMVGDIIGAQSYASTAKCLNIWALVLGIFLTIGAVALLVFAYITAYHM-LERAK 119
Query: 492 SNRGY 506
SNRGY
Sbjct: 120 SNRGY 124
>ref|XP_003353695.1| PREDICTED: interferon-induced transmembrane protein 1-like [Sus
scrofa].
Length = 207
Score = 215 bits (548), Expect = 2e-56
Identities = 106/130 (81%), Positives = 115/130 (88%)
Frame = +3
Query: 117 PPTYEMLKEEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWSLFNTLFMNWCCLGFV 296
P + + +KEE EVA +G P+ SAP+ +TVI I ET DHVVWSLF+TLF+NWCCLGFV
Sbjct: 78 PHSQDTVKEEQEVAEMGPPEGSAPMTSTVITIPRETPHRDHVVWSLFSTLFLNWCCLGFV 137
Query: 297 AFAYSVKARDRKMVGDIIGAQSYASTAKCLNIWALVLGIFLTIGAVALLVFACIAVYEMA 476
AFAYSVKARDRKMVGDI GAQSYASTAKCLNIWALVLGIFLTIGAVALLVFACIAVYEMA
Sbjct: 138 AFAYSVKARDRKMVGDITGAQSYASTAKCLNIWALVLGIFLTIGAVALLVFACIAVYEMA 197
Query: 477 LQHAKSNRGY 506
LQHAKSNRGY
Sbjct: 198 LQHAKSNRGY 207
>ref|XP_003124278.1| PREDICTED: interferon-induced transmembrane protein 1 [Sus scrofa].
Length = 124
Score = 206 bits (524), Expect = 2e-53
Identities = 101/125 (80%), Positives = 109/125 (87%)
Frame = +3
Query: 132 MLKEEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWSLFNTLFMNWCCLGFVAFAYS 311
M+K +HE+ LGAPQTSAPVATTVI I ETSVPDH+VWSLFNTLF+NWCCLGFVAFAYS
Sbjct: 1 MIKSQHEMDGLGAPQTSAPVATTVITIPRETSVPDHIVWSLFNTLFLNWCCLGFVAFAYS 60
Query: 312 VKARDRKMVGDIIGAQSYASTAKCLNIWALVLGIFLTIGAVALLVFACIAVYEMALQHAK 491
VKARDRKMVGDIIGAQSYASTAKCLNIWAL+LG+ LTIGA LLVF I Y M L+ AK
Sbjct: 61 VKARDRKMVGDIIGAQSYASTAKCLNIWALILGLILTIGATVLLVFVYITAYHM-LERAK 119
Query: 492 SNRGY 506
SNRGY
Sbjct: 120 SNRGY 124
>ref|XP_003354470.1| PREDICTED: interferon-induced transmembrane protein 3-like, partial
[Sus scrofa].
Length = 82
Score = 176 bits (445), Expect = 2e-44
Identities = 82/82 (100%), Positives = 82/82 (100%)
Frame = +3
Query: 72 MNCASQPFFTGAHGGPPTYEMLKEEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWS 251
MNCASQPFFTGAHGGPPTYEMLKEEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWS
Sbjct: 1 MNCASQPFFTGAHGGPPTYEMLKEEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWS 60
Query: 252 LFNTLFMNWCCLGFVAFAYSVK 317
LFNTLFMNWCCLGFVAFAYSVK
Sbjct: 61 LFNTLFMNWCCLGFVAFAYSVK 82
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 28,439,659
Number of extensions: 993921
Number of successful extensions: 4185
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 4150
Number of HSP's successfully gapped: 14
Length of query: 316
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 217
Effective length of database: 8,879,129
Effective search space: 1926770993
Effective search space used: 1926770993
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002384
(948 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 737 0.0
Sscrofa_Chr01 737 0.0
>Sscrofa_Chr02
|| Length = 162569375
Score = 737 bits (372), Expect = 0.0
Identities = 375/376 (99%)
Strand = Plus / Plus
Query: 573 ttcctacaggacttgcaaccagggaggcacagattcaagtagcaagagtcccacgtgctc 632
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162096544 ttcctacaggacttgcaaccagggaggcacagattcaagtagcaagagtcccacgtgctc 162096603
Query: 633 tgaggaaagcagagaggcagggctggggaacacccaccaccaagaccttccagagaagtt 692
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162096604 tgaggaaagcagagaggcagggctggggaacacccaccaccaagaccttccagagaagtt 162096663
Query: 693 acaggctcgccttacagacgggggctggtgccagcagagggtcagtcactaggcatccgc 752
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162096664 acaggctcgccttacagacgggggctggtgccagcagagggtcagtcactaggcatccgc 162096723
Query: 753 agctgatcggttgccagacccgggtttccagggagggaagaaaccgagttccaggcggtc 812
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162096724 agctgatcggttgccagacccgggtttccagggagggaagaaaccgagttccaggcggtc 162096783
Query: 813 ccaggatggccagggtgtgagtcagttcatatccccggggcttcctggccccatttcagc 872
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162096784 ccaggatggccagggtgtgagtcagttcatatccccggggcttcctggccccatttcagc 162096843
Query: 873 ccctccggcgcatctgaaggggctgaaatgggtggacctccgtgtgtgcagagtcctcgt 932
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162096844 ccctccggcgcgtctgaaggggctgaaatgggtggacctccgtgtgtgcagagtcctcgt 162096903
Query: 933 gggctccggctcggga 948
||||||||||||||||
Sbjct: 162096904 gggctccggctcggga 162096919
Score = 737 bits (372), Expect = 0.0
Identities = 375/376 (99%)
Strand = Plus / Minus
Query: 573 ttcctacaggacttgcaaccagggaggcacagattcaagtagcaagagtcccacgtgctc 632
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162335514 ttcctacaggacttgcaaccagggaggcacagattcaagtagcaagagtcccacgtgctc 162335455
Query: 633 tgaggaaagcagagaggcagggctggggaacacccaccaccaagaccttccagagaagtt 692
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162335454 tgaggaaagcagagaggcagggctggggaacacccaccaccaagaccttccagagaagtt 162335395
Query: 693 acaggctcgccttacagacgggggctggtgccagcagagggtcagtcactaggcatccgc 752
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162335394 acaggctcgccttacagacgggggctggtgccagcagagggtcagtcactaggcatccgc 162335335
Query: 753 agctgatcggttgccagacccgggtttccagggagggaagaaaccgagttccaggcggtc 812
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162335334 agctgatcggttgccagacccgggtttccagggagggaagaaaccgagttccaggcggtc 162335275
Query: 813 ccaggatggccagggtgtgagtcagttcatatccccggggcttcctggccccatttcagc 872
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162335274 ccaggatggccagggtgtgagtcagttcatatccccggggcttcctggccccatttcagc 162335215
Query: 873 ccctccggcgcatctgaaggggctgaaatgggtggacctccgtgtgtgcagagtcctcgt 932
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162335214 ccctccggcgcgtctgaaggggctgaaatgggtggacctccgtgtgtgcagagtcctcgt 162335155
Query: 933 gggctccggctcggga 948
||||||||||||||||
Sbjct: 162335154 gggctccggctcggga 162335139
Score = 630 bits (318), Expect = e-178
Identities = 318/318 (100%)
Strand = Plus / Minus
Query: 1 aatcgaaactactggggaaacagagcacccctgcacatcccctctccagaccacagcttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162072578 aatcgaaactactggggaaacagagcacccctgcacatcccctctccagaccacagcttc 162072519
Query: 61 tcctgggcaccatgaactgcgcttcccagcccttcttcactggtgcccatggaggacccc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162072518 tcctgggcaccatgaactgcgcttcccagcccttcttcactggtgcccatggaggacccc 162072459
Query: 121 caacatatgagatgctcaaggaggagcacgaggtggccgtgctgggggctccccagacct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162072458 caacatatgagatgctcaaggaggagcacgaggtggccgtgctgggggctccccagacct 162072399
Query: 181 cagcccccgtggccaccacggtgatcaacatccgaagcgagacctccgtgcccgaccacg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162072398 cagcccccgtggccaccacggtgatcaacatccgaagcgagacctccgtgcccgaccacg 162072339
Query: 241 tcgtctggtccctgttcaacaccctcttcatgaactggtgctgcctgggcttcgtggctt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162072338 tcgtctggtccctgttcaacaccctcttcatgaactggtgctgcctgggcttcgtggctt 162072279
Query: 301 tcgcctactccgtgaagg 318
||||||||||||||||||
Sbjct: 162072278 tcgcctactccgtgaagg 162072261
Score = 622 bits (314), Expect = e-176
Identities = 317/318 (99%)
Strand = Plus / Plus
Query: 1 aatcgaaactactggggaaacagagcacccctgcacatcccctctccagaccacagcttc 60
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 162353102 aatcgaaactactggggaaacagagcaccccggcacatcccctctccagaccacagcttc 162353161
Query: 61 tcctgggcaccatgaactgcgcttcccagcccttcttcactggtgcccatggaggacccc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162353162 tcctgggcaccatgaactgcgcttcccagcccttcttcactggtgcccatggaggacccc 162353221
Query: 121 caacatatgagatgctcaaggaggagcacgaggtggccgtgctgggggctccccagacct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162353222 caacatatgagatgctcaaggaggagcacgaggtggccgtgctgggggctccccagacct 162353281
Query: 181 cagcccccgtggccaccacggtgatcaacatccgaagcgagacctccgtgcccgaccacg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162353282 cagcccccgtggccaccacggtgatcaacatccgaagcgagacctccgtgcccgaccacg 162353341
Query: 241 tcgtctggtccctgttcaacaccctcttcatgaactggtgctgcctgggcttcgtggctt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162353342 tcgtctggtccctgttcaacaccctcttcatgaactggtgctgcctgggcttcgtggctt 162353401
Query: 301 tcgcctactccgtgaagg 318
||||||||||||||||||
Sbjct: 162353402 tcgcctactccgtgaagg 162353419
Score = 381 bits (192), Expect = e-103
Identities = 195/196 (99%)
Strand = Plus / Minus
Query: 316 aggcgagggaccggaagatggtgggagacatcattggggcccagagctatgcctccaccg 375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162076993 aggcgagggaccggaagatggtgggagacatcattggggcccagagctatgcctccaccg 162076934
Query: 376 ccaagtgcctgaacatctgggctctggtcctgggcatttttctgaccatcggagccgtcg 435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162076933 ccaagtgcctgaacatctgggctctggtcctgggcatttttctgaccatcggagccgtcg 162076874
Query: 436 ctcttctggtgtttgcatgcatagcagtctatgagatggctttacaacatgcaaagagta 495
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 162076873 ctcttctggtgtttgcatgcatagcagtctacgagatggctttacaacatgcaaagagta 162076814
Query: 496 acagaggctactagca 511
||||||||||||||||
Sbjct: 162076813 acagaggctactagca 162076798
Score = 381 bits (192), Expect = e-103
Identities = 195/196 (99%)
Strand = Plus / Minus
Query: 316 aggcgagggaccggaagatggtgggagacatcattggggcccagagctatgcctccaccg 375
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 162335771 aggcgagggaccggaagatggtgggagacatcactggggcccagagctatgcctccaccg 162335712
Query: 376 ccaagtgcctgaacatctgggctctggtcctgggcatttttctgaccatcggagccgtcg 435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162335711 ccaagtgcctgaacatctgggctctggtcctgggcatttttctgaccatcggagccgtcg 162335652
Query: 436 ctcttctggtgtttgcatgcatagcagtctatgagatggctttacaacatgcaaagagta 495
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162335651 ctcttctggtgtttgcatgcatagcagtctatgagatggctttacaacatgcaaagagta 162335592
Query: 496 acagaggctactagca 511
||||||||||||||||
Sbjct: 162335591 acagaggctactagca 162335576
Score = 381 bits (192), Expect = e-103
Identities = 195/196 (99%)
Strand = Plus / Minus
Query: 316 aggcgagggaccggaagatggtgggagacatcattggggcccagagctatgcctccaccg 375
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 162340035 aggcgagggaccggaagatggtgggagacatcactggggcccagagctatgcctccaccg 162339976
Query: 376 ccaagtgcctgaacatctgggctctggtcctgggcatttttctgaccatcggagccgtcg 435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162339975 ccaagtgcctgaacatctgggctctggtcctgggcatttttctgaccatcggagccgtcg 162339916
Query: 436 ctcttctggtgtttgcatgcatagcagtctatgagatggctttacaacatgcaaagagta 495
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162339915 ctcttctggtgtttgcatgcatagcagtctatgagatggctttacaacatgcaaagagta 162339856
Query: 496 acagaggctactagca 511
||||||||||||||||
Sbjct: 162339855 acagaggctactagca 162339840
Score = 363 bits (183), Expect = 1e-97
Identities = 189/191 (98%)
Strand = Plus / Minus
Query: 128 tgagatgctcaaggaggagcacgaggtggccgtgctgggggctccccagacctcagcccc 187
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162077819 tgagatgctcagggaggagcacgaggtggccgtgctgggggctccccagacctcagcccc 162077760
Query: 188 cgtggccaccacggtgatcaacatccgaagcgagacctccgtgcccgaccacgtcgtctg 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162077759 cgtggccaccacggtgatcaacatccgaagcgagacctccgtgcccgaccacgtcgtctg 162077700
Query: 248 gtccctgttcaacaccctcttcatgaactggtgctgcctgggcttcgtggctttcgccta 307
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162077699 gtccctgttcaacgccctcttcatgaactggtgctgcctgggcttcgtggctttcgccta 162077640
Query: 308 ctccgtgaagg 318
|||||||||||
Sbjct: 162077639 ctccgtgaagg 162077629
Score = 363 bits (183), Expect = 1e-97
Identities = 189/191 (98%)
Strand = Plus / Plus
Query: 128 tgagatgctcaaggaggagcacgaggtggccgtgctgggggctccccagacctcagcccc 187
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162095466 tgagatgctcagggaggagcacgaggtggccgtgctgggggctccccagacctcagcccc 162095525
Query: 188 cgtggccaccacggtgatcaacatccgaagcgagacctccgtgcccgaccacgtcgtctg 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162095526 cgtggccaccacggtgatcaacatccgaagcgagacctccgtgcccgaccacgtcgtctg 162095585
Query: 248 gtccctgttcaacaccctcttcatgaactggtgctgcctgggcttcgtggctttcgccta 307
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162095586 gtccctgttcaacgccctcttcatgaactggtgctgcctgggcttcgtggctttcgccta 162095645
Query: 308 ctccgtgaagg 318
|||||||||||
Sbjct: 162095646 ctccgtgaagg 162095656
Score = 363 bits (183), Expect = 1e-97
Identities = 189/191 (98%)
Strand = Plus / Minus
Query: 128 tgagatgctcaaggaggagcacgaggtggccgtgctgggggctccccagacctcagcccc 187
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162340860 tgagatgctcagggaggagcacgaggtggccgtgctgggggctccccagacctcagcccc 162340801
Query: 188 cgtggccaccacggtgatcaacatccgaagcgagacctccgtgcccgaccacgtcgtctg 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162340800 cgtggccaccacggtgatcaacatccgaagcgagacctccgtgcccgaccacgtcgtctg 162340741
Query: 248 gtccctgttcaacaccctcttcatgaactggtgctgcctgggcttcgtggctttcgccta 307
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162340740 gtccctgttcaacgccctcttcatgaactggtgctgcctgggcttcgtggctttcgccta 162340681
Query: 308 ctccgtgaagg 318
|||||||||||
Sbjct: 162340680 ctccgtgaagg 162340670
Score = 281 bits (142), Expect = 3e-73
Identities = 183/196 (93%), Gaps = 3/196 (1%)
Strand = Plus / Plus
Query: 316 aggcgagggaccggaagatggtgggagacatcattggggcccagagctatgcctccaccg 375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162096290 aggcgagggaccggaagatggtgggagacatcattggggcccagagctatgcctccaccg 162096349
Query: 376 ccaagtgcctgaacatctgggctctggtcctgggcatttttctgaccatcggagccgtcg 435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162096350 ccaagtgcctgaacatctgggctctggtcctgggcatttttctgaccatcggagccgtcg 162096409
Query: 436 ctcttctggtgtttgcatgcatagcagtctatgagatggctttacaacatgcaaagagta 495
|||||||||||||||||| |||| ||| ||| | ||| ||| | | ||||||||||
Sbjct: 162096410 ctcttctggtgtttgcatacataacagcctaccatatg---ttagagcgcgcaaagagta 162096466
Query: 496 acagaggctactagca 511
||||||||||||||||
Sbjct: 162096467 acagaggctactagca 162096482
Score = 274 bits (138), Expect = 8e-71
Identities = 165/174 (94%)
Strand = Plus / Minus
Query: 145 agcacgaggtggccgtgctgggggctccccagacctcagcccccgtggccaccacggtga 204
|||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162100273 agcacgagatggacgggctgggggctccccagacctcagcccccgtggccaccacggtga 162100214
Query: 205 tcaacatccgaagcgagacctccgtgcccgaccacgtcgtctggtccctgttcaacaccc 264
||| ||||| || ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 162100213 tcaccatccccagggagacctccgtgcccgaccacatcgtctggtccctgttcaacaccc 162100154
Query: 265 tcttcatgaactggtgctgcctgggcttcgtggctttcgcctactccgtgaagg 318
||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162100153 tcttcctgaactggtgctgcctgggcttcgtggctttcgcctactccgtgaagg 162100100
Score = 274 bits (138), Expect = 8e-71
Identities = 165/174 (94%)
Strand = Plus / Plus
Query: 145 agcacgaggtggccgtgctgggggctccccagacctcagcccccgtggccaccacggtga 204
|||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162333181 agcacgagatggacgggctgggggctccccagacctcagcccccgtggccaccacggtga 162333240
Query: 205 tcaacatccgaagcgagacctccgtgcccgaccacgtcgtctggtccctgttcaacaccc 264
||| ||||| || ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 162333241 tcaccatccccagggagacctccgtgcccgaccacatcgtctggtccctgttcaacaccc 162333300
Query: 265 tcttcatgaactggtgctgcctgggcttcgtggctttcgcctactccgtgaagg 318
||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162333301 tcttcctgaactggtgctgcctgggcttcgtggctttcgcctactccgtgaagg 162333354
Score = 230 bits (116), Expect = 1e-57
Identities = 152/164 (92%)
Strand = Plus / Minus
Query: 316 aggcgagggaccggaagatggtgggagacatcattggggcccagagctatgcctccaccg 375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162102703 aggcgagggaccggaagatggtgggagacatcattggggcccagagctatgcctccaccg 162102644
Query: 376 ccaagtgcctgaacatctgggctctggtcctgggcatttttctgaccatcggagccgtcg 435
||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |
Sbjct: 162102643 ccaagtgcctgaacatctgggctctggtcctgggcctcattctgaccatcggagccactg 162102584
Query: 436 ctcttctggtgtttgcatgcatagcagtctatgagatggcttta 479
|||||||||||||| || ||| |||| |||||||||||||||
Sbjct: 162102583 ttcttctggtgtttgtatacatggcagcatatgagatggcttta 162102540
Score = 210 bits (106), Expect = 1e-51
Identities = 174/196 (88%), Gaps = 3/196 (1%)
Strand = Plus / Minus
Query: 316 aggcgagggaccggaagatggtgggagacatcattggggcccagagctatgcctccaccg 375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162099479 aggcgagggaccggaagatggtgggagacatcattggggcccagagctatgcctccaccg 162099420
Query: 376 ccaagtgcctgaacatctgggctctggtcctgggcatttttctgaccatcggagccgtcg 435
|||||||||||||||||||||||||| |||||||| | ||||||||||||||||| |
Sbjct: 162099419 ccaagtgcctgaacatctgggctctgatcctgggcctcattctgaccatcggagccactg 162099360
Query: 436 ctcttctggtgtttgcatgcatagcagtctatgagatggctttacaacatgcaaagagta 495
|||||||||||||| || |||| ||| ||| | ||| ||| | | ||||||||||
Sbjct: 162099359 ttcttctggtgtttgtatacataacagcctaccatatg---ttagagcgcgcaaagagta 162099303
Query: 496 acagaggctactagca 511
||||||||||||||||
Sbjct: 162099302 acagaggctactagca 162099287
Score = 131 bits (66), Expect = 8e-28
Identities = 78/82 (95%)
Strand = Plus / Minus
Query: 234 gaccacgtcgtctggtccctgttcaacaccctcttcatgaactggtgctgcctgggcttc 293
||||||||| ||||||| ||||||| |||||||||| |||||||||||||||||||||||
Sbjct: 162210286 gaccacgtcctctggtcgctgttcagcaccctcttcctgaactggtgctgcctgggcttc 162210227
Query: 294 gtggctttcgcctactccgtga 315
||||||||||||||||||||||
Sbjct: 162210226 gtggctttcgcctactccgtga 162210205
>Sscrofa_Chr01
|| Length = 315321322
Score = 737 bits (372), Expect = 0.0
Identities = 375/376 (99%)
Strand = Plus / Plus
Query: 573 ttcctacaggacttgcaaccagggaggcacagattcaagtagcaagagtcccacgtgctc 632
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296331399 ttcctacaggacttgcaaccagggaggcacagattcaagtagcaagagtcccacgtgctc 296331458
Query: 633 tgaggaaagcagagaggcagggctggggaacacccaccaccaagaccttccagagaagtt 692
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296331459 tgaggaaagcagagaggcagggctggggaacacccaccaccaagaccttccagagaagtt 296331518
Query: 693 acaggctcgccttacagacgggggctggtgccagcagagggtcagtcactaggcatccgc 752
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296331519 acaggctcgccttacagacgggggctggtgccagcagagggtcagtcactaggcatccgc 296331578
Query: 753 agctgatcggttgccagacccgggtttccagggagggaagaaaccgagttccaggcggtc 812
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296331579 agctgatcggttgccagacccgggtttccagggagggaagaaaccgagttccaggcggtc 296331638
Query: 813 ccaggatggccagggtgtgagtcagttcatatccccggggcttcctggccccatttcagc 872
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296331639 ccaggatggccagggtgtgagtcagttcatatccccggggcttcctggccccatttcagc 296331698
Query: 873 ccctccggcgcatctgaaggggctgaaatgggtggacctccgtgtgtgcagagtcctcgt 932
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296331699 ccctccggcgcgtctgaaggggctgaaatgggtggacctccgtgtgtgcagagtcctcgt 296331758
Query: 933 gggctccggctcggga 948
||||||||||||||||
Sbjct: 296331759 gggctccggctcggga 296331774
Score = 381 bits (192), Expect = e-103
Identities = 195/196 (99%)
Strand = Plus / Plus
Query: 316 aggcgagggaccggaagatggtgggagacatcattggggcccagagctatgcctccaccg 375
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 296331142 aggcgagggaccggaagatggtgggagacatcactggggcccagagctatgcctccaccg 296331201
Query: 376 ccaagtgcctgaacatctgggctctggtcctgggcatttttctgaccatcggagccgtcg 435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296331202 ccaagtgcctgaacatctgggctctggtcctgggcatttttctgaccatcggagccgtcg 296331261
Query: 436 ctcttctggtgtttgcatgcatagcagtctatgagatggctttacaacatgcaaagagta 495
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296331262 ctcttctggtgtttgcatgcatagcagtctatgagatggctttacaacatgcaaagagta 296331321
Query: 496 acagaggctactagca 511
||||||||||||||||
Sbjct: 296331322 acagaggctactagca 296331337
Score = 149 bits (75), Expect = 3e-33
Identities = 156/183 (85%)
Strand = Plus / Plus
Query: 136 tcaaggaggagcacgaggtggccgtgctgggggctccccagacctcagcccccgtggcca 195
||||||||||||| |||||||||| | ||||| | ||| | ||||| ||| || |||
Sbjct: 296330323 tcaaggaggagcaggaggtggccgagatggggccgcccgaaggttcagctcccatgacca 296330382
Query: 196 ccacggtgatcaacatccgaagcgagacctccgtgcccgaccacgtcgtctggtccctgt 255
||||||||||| ||||| || |||||| || | ||||||||||||||||| ||||
Sbjct: 296330383 gcacggtgatcaccatccccagggagaccccccaccgggaccacgtcgtctggtcgctgt 296330442
Query: 256 tcaacaccctcttcatgaactggtgctgcctgggcttcgtggctttcgcctactccgtga 315
||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296330443 tcagcaccctcttcctgaactggtgctgcctgggcttcgtggctttcgcctactccgtga 296330502
Query: 316 agg 318
|||
Sbjct: 296330503 agg 296330505
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 22,389,496
Number of extensions: 191
Number of successful extensions: 191
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 191
Number of HSP's successfully gapped: 19
Length of query: 948
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 927
Effective length of database: 2,808,413,156
Effective search space: 2603398995612
Effective search space used: 2603398995612
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)