Animal-Genome cDNA 20110601C-002451


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002451
         (1376 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001179665.1| alpha-galactosidase A [Bos taurus].               665   0.0  
Alignment   gi|XP_002699865.1| PREDICTED: alpha-galactosidase A-like [Bos t...   665   0.0  
Alignment   gi|NP_001039814.1| alpha-N-acetylgalactosaminidase precursor [B...   370   e-102
Alignment   gi|XP_002707955.1| PREDICTED: alpha-galactosidase A-like [Bos t...   257   1e-68

>ref|NP_001179665.1| alpha-galactosidase A [Bos taurus].
          Length = 439

 Score =  665 bits (1715), Expect = 0.0
 Identities = 308/360 (85%), Positives = 336/360 (93%)
 Frame = +1

Query: 295  VMTATMKPVSRVRRLGYVLPFCFLAQVLWGVPGARALNNGLARTPTMGWLHWERFMCNVD 474
            +MTATMKPVSRV RLG VL FCF   V +G+P A  L+NGLA TPTMGWLHWERFMCNV+
Sbjct: 1    MMTATMKPVSRVLRLGCVLAFCFQVLVPYGLPRAWGLDNGLAMTPTMGWLHWERFMCNVN 60

Query: 475  CQEDPDSCISEKLFRQIAELMASDGWKDAGYEYLCIDDCWMAPKRDSQGRLQADPKRFPG 654
            CQE+PDSCISEKLF QIAE+MASDGWKD GYEY+CIDDCWMAP+RDS+GRLQADPKRFPG
Sbjct: 61   CQEEPDSCISEKLFLQIAEIMASDGWKDVGYEYICIDDCWMAPERDSKGRLQADPKRFPG 120

Query: 655  GIRRLADYVHSKGLKLGIYADVGNKTCAGFPGSFGYYDIDAKTFAEWGVDLLKFDGCYCD 834
            GI RLADYVHSKGLKLGIYADVGNKTCAGFPGSFGYYDIDA+TFA+WGVDLLKFDGCYCD
Sbjct: 121  GIHRLADYVHSKGLKLGIYADVGNKTCAGFPGSFGYYDIDAQTFADWGVDLLKFDGCYCD 180

Query: 835  SVKHLADGYKQMSLALNRTGRSIVYSCEWPLYMQPFFKPNYTEIREYCNHWRNFADIYDS 1014
            S++HLA+GYKQMSLALNRTGRSIVYSCEWPLY+ P FKPNYTEIREYCNHWRNFADIYDS
Sbjct: 181  SIQHLAEGYKQMSLALNRTGRSIVYSCEWPLYVWPIFKPNYTEIREYCNHWRNFADIYDS 240

Query: 1015 WQSIKNILDWTSSNQEKIVPVAGPGGWNDPDMLVIGNFGLSWNQEVTQMALWAIMAAPLL 1194
            W+SI+  LDWTSSNQ+ IVPVAGPGGWNDPDMLVIGNFGLS +Q++TQMALWAIMAAPLL
Sbjct: 241  WESIRKTLDWTSSNQKIIVPVAGPGGWNDPDMLVIGNFGLSRDQQITQMALWAIMAAPLL 300

Query: 1195 MSNDLRHISPKAKALLQDKDVIAINXDPLGKQGHRLRKDXHFEVWERPLLNLAWAVAMVN 1374
            MSNDLRHISP+AKALLQDKDVIAIN D LGKQG+ LRK+ +FE+WERPLLNLAWAVA+VN
Sbjct: 301  MSNDLRHISPEAKALLQDKDVIAINQDRLGKQGYWLRKEDNFEMWERPLLNLAWAVAIVN 360


>ref|XP_002699865.1| PREDICTED: alpha-galactosidase A-like [Bos taurus].
          Length = 439

 Score =  665 bits (1715), Expect = 0.0
 Identities = 308/360 (85%), Positives = 336/360 (93%)
 Frame = +1

Query: 295  VMTATMKPVSRVRRLGYVLPFCFLAQVLWGVPGARALNNGLARTPTMGWLHWERFMCNVD 474
            +MTATMKPVSRV RLG VL FCF   V +G+P A  L+NGLA TPTMGWLHWERFMCNV+
Sbjct: 1    MMTATMKPVSRVLRLGCVLAFCFQVLVPYGLPRAWGLDNGLAMTPTMGWLHWERFMCNVN 60

Query: 475  CQEDPDSCISEKLFRQIAELMASDGWKDAGYEYLCIDDCWMAPKRDSQGRLQADPKRFPG 654
            CQE+PDSCISEKLF QIAE+MASDGWKD GYEY+CIDDCWMAP+RDS+GRLQADPKRFPG
Sbjct: 61   CQEEPDSCISEKLFLQIAEIMASDGWKDVGYEYICIDDCWMAPERDSKGRLQADPKRFPG 120

Query: 655  GIRRLADYVHSKGLKLGIYADVGNKTCAGFPGSFGYYDIDAKTFAEWGVDLLKFDGCYCD 834
            GI RLADYVHSKGLKLGIYADVGNKTCAGFPGSFGYYDIDA+TFA+WGVDLLKFDGCYCD
Sbjct: 121  GIHRLADYVHSKGLKLGIYADVGNKTCAGFPGSFGYYDIDAQTFADWGVDLLKFDGCYCD 180

Query: 835  SVKHLADGYKQMSLALNRTGRSIVYSCEWPLYMQPFFKPNYTEIREYCNHWRNFADIYDS 1014
            S++HLA+GYKQMSLALNRTGRSIVYSCEWPLY+ P FKPNYTEIREYCNHWRNFADIYDS
Sbjct: 181  SIQHLAEGYKQMSLALNRTGRSIVYSCEWPLYVWPIFKPNYTEIREYCNHWRNFADIYDS 240

Query: 1015 WQSIKNILDWTSSNQEKIVPVAGPGGWNDPDMLVIGNFGLSWNQEVTQMALWAIMAAPLL 1194
            W+SI+  LDWTSSNQ+ IVPVAGPGGWNDPDMLVIGNFGLS +Q++TQMALWAIMAAPLL
Sbjct: 241  WESIRKTLDWTSSNQKIIVPVAGPGGWNDPDMLVIGNFGLSRDQQITQMALWAIMAAPLL 300

Query: 1195 MSNDLRHISPKAKALLQDKDVIAINXDPLGKQGHRLRKDXHFEVWERPLLNLAWAVAMVN 1374
            MSNDLRHISP+AKALLQDKDVIAIN D LGKQG+ LRK+ +FE+WERPLLNLAWAVA+VN
Sbjct: 301  MSNDLRHISPEAKALLQDKDVIAINQDRLGKQGYWLRKEDNFEMWERPLLNLAWAVAIVN 360


>ref|NP_001039814.1| alpha-N-acetylgalactosaminidase precursor [Bos taurus].
          Length = 411

 Score =  370 bits (949), Expect = e-102
 Identities = 183/325 (56%), Positives = 230/325 (70%), Gaps = 5/325 (1%)
 Frame = +1

Query: 403  LNNGLARTPTMGWLHWERFMCNVDCQEDPDSCISEKLFRQIAELMASDGWKDAGYEYLCI 582
            L NGL R P MGWL WERF CN+DC EDP +CISE+LF ++A+ +A DGW+D GY YL I
Sbjct: 18   LENGLLRKPPMGWLAWERFRCNIDCSEDPKNCISEQLFMEMADRLAQDGWRDLGYVYLNI 77

Query: 583  DDCWMAPKRDSQGRLQADPKRFPGGIRRLADYVHSKGLKLGIYADVGNKTCAGFPGS-FG 759
            DDCW+   RD++G L  D KRFP GI  LADY HS GLKLGIY D+GN TC G+PG+   
Sbjct: 78   DDCWIGG-RDAKGNLVPDRKRFPHGIAFLADYAHSLGLKLGIYEDLGNFTCMGYPGTTLD 136

Query: 760  YYDIDAKTFAEWGVDLLKFDGCYCDSVKHLADGYKQMSLALNRTGRSIVYSCEWPLY--- 930
                DA+TFAEW VD+LK DGCY  + +  A+GY +M+ ALN TGR I +SC WP Y   
Sbjct: 137  KVVQDAQTFAEWKVDMLKLDGCY-STPQERAEGYPKMAAALNATGRPIAFSCSWPAYEGG 195

Query: 931  MQPFFKPNYTEIREYCNHWRNFADIYDSWQSIKNILDWTSSNQEKIVPVAGPGGWNDPDM 1110
            + P  K NYT + + CN WRNF DI DSW+S+ ++LDW  ++Q+ + P+AGPG WNDPDM
Sbjct: 196  LPP--KVNYTLLADICNLWRNFDDIQDSWRSVLSVLDWFVTHQDVLQPIAGPGHWNDPDM 253

Query: 1111 LVIGNFGLSWNQEVTQMALWAIMAAPLLMSNDLRHISPKAKALLQDKDVIAINXDPLGKQ 1290
            L+IGNFGLS+ Q   QMALW ++AAPL MS DLR IS +   +LQ+  +I IN DPLG Q
Sbjct: 254  LLIGNFGLSFEQAQAQMALWTVLAAPLFMSTDLRTISAQNMDILQNPLMIKINQDPLGIQ 313

Query: 1291 GHRLRKD-XHFEVWERPLLNLAWAV 1362
            G R+ K+  H EV+ RPL + A A+
Sbjct: 314  GRRILKEKSHIEVYLRPLASEASAI 338


>ref|XP_002707955.1| PREDICTED: alpha-galactosidase A-like [Bos taurus].
          Length = 226

 Score =  257 bits (657), Expect = 1e-68
 Identities = 120/142 (84%), Positives = 132/142 (92%)
 Frame = +1

Query: 949  PNYTEIREYCNHWRNFADIYDSWQSIKNILDWTSSNQEKIVPVAGPGGWNDPDMLVIGNF 1128
            PNYTEIREYCNHWRNFADIYDSW+SI+  LDWTSSNQ+ IVPVAGPGGWNDPDMLVIGNF
Sbjct: 6    PNYTEIREYCNHWRNFADIYDSWESIRKTLDWTSSNQKIIVPVAGPGGWNDPDMLVIGNF 65

Query: 1129 GLSWNQEVTQMALWAIMAAPLLMSNDLRHISPKAKALLQDKDVIAINXDPLGKQGHRLRK 1308
            GLS +Q++TQMALWAIMAAPLLMSNDLRHISP+AKALL DKDVIAIN D LGKQG+ L K
Sbjct: 66   GLSRDQQITQMALWAIMAAPLLMSNDLRHISPEAKALLHDKDVIAINQDRLGKQGYWLTK 125

Query: 1309 DXHFEVWERPLLNLAWAVAMVN 1374
            + +FE+WERPLLNLAWAVA+VN
Sbjct: 126  EDNFEMWERPLLNLAWAVAIVN 147


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 55,023,562
Number of extensions: 1535286
Number of successful extensions: 4315
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 4301
Number of HSP's successfully gapped: 4
Length of query: 458
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 352
Effective length of database: 14,174,046
Effective search space: 4989264192
Effective search space used: 4989264192
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002451
         (1376 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_538109.2| PREDICTED: similar to Alpha-galactosidase A pre...   646   0.0  
Alignment   gi|XP_538347.2| PREDICTED: similar to Alpha-N-acetylgalactosami...   370   e-102

>ref|XP_538109.2| PREDICTED: similar to Alpha-galactosidase A precursor (Melibiase)
            (Alpha-D-galactoside galactohydrolase)
            (Alpha-D-galactosidase A) (Agalsidase alfa) [Canis
            familiaris].
          Length = 420

 Score =  646 bits (1666), Expect = 0.0
 Identities = 299/355 (84%), Positives = 330/355 (92%)
 Frame = +1

Query: 310  MKPVSRVRRLGYVLPFCFLAQVLWGVPGARALNNGLARTPTMGWLHWERFMCNVDCQEDP 489
            MK  S++ +  ++L   FLA VLW VPGARAL+NGLA TPTMGWLHWERFMCNVDCQE+P
Sbjct: 1    MKLKSQLLQPCFLLALRFLALVLWSVPGARALDNGLAMTPTMGWLHWERFMCNVDCQEEP 60

Query: 490  DSCISEKLFRQIAELMASDGWKDAGYEYLCIDDCWMAPKRDSQGRLQADPKRFPGGIRRL 669
            DSCISEKLF Q+AELM SDGWKDAGY+YLCIDDCWMAPKRDS+GRLQADPKRFP GI+ L
Sbjct: 61   DSCISEKLFMQMAELMDSDGWKDAGYKYLCIDDCWMAPKRDSKGRLQADPKRFPNGIQSL 120

Query: 670  ADYVHSKGLKLGIYADVGNKTCAGFPGSFGYYDIDAKTFAEWGVDLLKFDGCYCDSVKHL 849
            A+YVHSKGLKLGIYADVGNKTCAGFPGSFG+YDIDAKTFA+WGVDLLKFDGCYCDSV+HL
Sbjct: 121  ANYVHSKGLKLGIYADVGNKTCAGFPGSFGHYDIDAKTFADWGVDLLKFDGCYCDSVEHL 180

Query: 850  ADGYKQMSLALNRTGRSIVYSCEWPLYMQPFFKPNYTEIREYCNHWRNFADIYDSWQSIK 1029
             +GYK+MSLALNRTGRSIVYSCEWPLYM PF +PNYTEIR+YCNHWRNF D+YDSWQSIK
Sbjct: 181  ENGYKRMSLALNRTGRSIVYSCEWPLYMWPFHEPNYTEIRQYCNHWRNFQDVYDSWQSIK 240

Query: 1030 NILDWTSSNQEKIVPVAGPGGWNDPDMLVIGNFGLSWNQEVTQMALWAIMAAPLLMSNDL 1209
            +IL WTSSNQ++IV VAGPGGWNDPDMLVIGNFGLSW+Q+VTQMALWAIMAAPLLMSNDL
Sbjct: 241  SILAWTSSNQKRIVHVAGPGGWNDPDMLVIGNFGLSWDQQVTQMALWAIMAAPLLMSNDL 300

Query: 1210 RHISPKAKALLQDKDVIAINXDPLGKQGHRLRKDXHFEVWERPLLNLAWAVAMVN 1374
            RHISP+AKALLQ+KDVIAIN DPLGKQG+RLRK+ + EVWERPL +LAWAVAMVN
Sbjct: 301  RHISPQAKALLQNKDVIAINQDPLGKQGYRLRKEDNIEVWERPLTDLAWAVAMVN 355


>ref|XP_538347.2| PREDICTED: similar to Alpha-N-acetylgalactosaminidase precursor
            (Alpha-galactosidase B) [Canis familiaris].
          Length = 411

 Score =  370 bits (951), Expect = e-102
 Identities = 192/344 (55%), Positives = 234/344 (68%), Gaps = 5/344 (1%)
 Frame = +1

Query: 346  VLPFCFLAQVLWGVPGARALNNGLARTPTMGWLHWERFMCNVDCQEDPDSCISEKLFRQI 525
            V+    +AQVL        L NGL R P MGWL WERF CN DC EDP +CISE+LF ++
Sbjct: 6    VVLLALVAQVL-------VLENGLLRKPPMGWLAWERFRCNTDCDEDPKNCISERLFLEM 58

Query: 526  AELMASDGWKDAGYEYLCIDDCWMAPKRDSQGRLQADPKRFPGGIRRLADYVHSKGLKLG 705
            A+ +A DGW+D GY YL IDDCW+   RD++G L  DPKRFP GI  LADY HS GLKLG
Sbjct: 59   ADHLAQDGWRDLGYTYLNIDDCWIGG-RDAKGHLIPDPKRFPNGIAFLADYAHSLGLKLG 117

Query: 706  IYADVGNKTCAGFPGSFGYYDI-DAKTFAEWGVDLLKFDGCYCDSVKHLADGYKQMSLAL 882
            IY D+GN TC G+PG+     I DA+TFAEW VD+LK DGC+  + +  A GY  M+ AL
Sbjct: 118  IYEDMGNFTCMGYPGTTLDKVIQDAQTFAEWKVDMLKLDGCF-STPEERAKGYPMMAAAL 176

Query: 883  NRTGRSIVYSCEWPLY---MQPFFKPNYTEIREYCNHWRNFADIYDSWQSIKNILDWTSS 1053
            N TGR I +SC WP Y   + P  K NYT + E CN WRN+ DI DSW S+ +ILDW   
Sbjct: 177  NATGRPIAFSCSWPAYEGGLPP--KVNYTLLTEICNVWRNYDDIQDSWSSVLSILDWFVD 234

Query: 1054 NQEKIVPVAGPGGWNDPDMLVIGNFGLSWNQEVTQMALWAIMAAPLLMSNDLRHISPKAK 1233
            NQ+ + PVAGPG WNDPDML+IGNFGLS+ Q   QMALW ++AAPL MS DLR IS +  
Sbjct: 235  NQDILQPVAGPGHWNDPDMLLIGNFGLSFEQARAQMALWTVLAAPLFMSTDLRTISAQNM 294

Query: 1234 ALLQDKDVIAINXDPLGKQGHRLRKD-XHFEVWERPLLNLAWAV 1362
             +LQ+  +I IN DPLG QG R+ K+  H EV+ RPL + A A+
Sbjct: 295  DILQNPLMIKINQDPLGIQGRRILKEKFHIEVFMRPLASEASAL 338


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 57,441,005
Number of extensions: 1587469
Number of successful extensions: 4526
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4521
Number of HSP's successfully gapped: 2
Length of query: 458
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 352
Effective length of database: 15,340,888
Effective search space: 5399992576
Effective search space used: 5399992576
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002451
         (1376 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_000160.1| alpha-galactosidase A precursor [Homo sapiens].      642   0.0  
Alignment   gi|NP_000253.1| alpha-N-acetylgalactosaminidase precursor [Homo...   369   e-102

>ref|NP_000160.1| alpha-galactosidase A precursor [Homo sapiens].
          Length = 429

 Score =  642 bits (1656), Expect = 0.0
 Identities = 295/346 (85%), Positives = 323/346 (93%)
 Frame = +1

Query: 337  LGYVLPFCFLAQVLWGVPGARALNNGLARTPTMGWLHWERFMCNVDCQEDPDSCISEKLF 516
            LG  L   FLA V W +PGARAL+NGLARTPTMGWLHWERFMCN+DCQE+PDSCISEKLF
Sbjct: 10   LGCALALRFLALVSWDIPGARALDNGLARTPTMGWLHWERFMCNLDCQEEPDSCISEKLF 69

Query: 517  RQIAELMASDGWKDAGYEYLCIDDCWMAPKRDSQGRLQADPKRFPGGIRRLADYVHSKGL 696
             ++AELM S+GWKDAGYEYLCIDDCWMAP+RDS+GRLQADP+RFP GIR+LA+YVHSKGL
Sbjct: 70   MEMAELMVSEGWKDAGYEYLCIDDCWMAPQRDSEGRLQADPQRFPHGIRQLANYVHSKGL 129

Query: 697  KLGIYADVGNKTCAGFPGSFGYYDIDAKTFAEWGVDLLKFDGCYCDSVKHLADGYKQMSL 876
            KLGIYADVGNKTCAGFPGSFGYYDIDA+TFA+WGVDLLKFDGCYCDS+++LADGYK MSL
Sbjct: 130  KLGIYADVGNKTCAGFPGSFGYYDIDAQTFADWGVDLLKFDGCYCDSLENLADGYKHMSL 189

Query: 877  ALNRTGRSIVYSCEWPLYMQPFFKPNYTEIREYCNHWRNFADIYDSWQSIKNILDWTSSN 1056
            ALNRTGRSIVYSCEWPLYM PF KPNYTEIR+YCNHWRNFADI DSW+SIK+ILDWTS N
Sbjct: 190  ALNRTGRSIVYSCEWPLYMWPFQKPNYTEIRQYCNHWRNFADIDDSWKSIKSILDWTSFN 249

Query: 1057 QEKIVPVAGPGGWNDPDMLVIGNFGLSWNQEVTQMALWAIMAAPLLMSNDLRHISPKAKA 1236
            QE+IV VAGPGGWNDPDMLVIGNFGLSWNQ+VTQMALWAIMAAPL MSNDLRHISP+AKA
Sbjct: 250  QERIVDVAGPGGWNDPDMLVIGNFGLSWNQQVTQMALWAIMAAPLFMSNDLRHISPQAKA 309

Query: 1237 LLQDKDVIAINXDPLGKQGHRLRKDXHFEVWERPLLNLAWAVAMVN 1374
            LLQDKDVIAIN DPLGKQG++LR+  +FEVWERPL  LAWAVAM+N
Sbjct: 310  LLQDKDVIAINQDPLGKQGYQLRQGDNFEVWERPLSGLAWAVAMIN 355


>ref|NP_000253.1| alpha-N-acetylgalactosaminidase precursor [Homo sapiens].
          Length = 411

 Score =  369 bits (948), Expect = e-102
 Identities = 185/325 (56%), Positives = 231/325 (71%), Gaps = 5/325 (1%)
 Frame = +1

Query: 403  LNNGLARTPTMGWLHWERFMCNVDCQEDPDSCISEKLFRQIAELMASDGWKDAGYEYLCI 582
            L+NGL +TP MGWL WERF CN++C EDP +CISE+LF ++A+ MA DGW+D GY YL I
Sbjct: 18   LDNGLLQTPPMGWLAWERFRCNINCDEDPKNCISEQLFMEMADRMAQDGWRDMGYTYLNI 77

Query: 583  DDCWMAPKRDSQGRLQADPKRFPGGIRRLADYVHSKGLKLGIYADVGNKTCAGFPGS-FG 759
            DDCW+   RD+ GRL  DPKRFP GI  LADYVHS GLKLGIYAD+GN TC G+PG+   
Sbjct: 78   DDCWIGG-RDASGRLMPDPKRFPHGIPFLADYVHSLGLKLGIYADMGNFTCMGYPGTTLD 136

Query: 760  YYDIDAKTFAEWGVDLLKFDGCYCDSVKHLADGYKQMSLALNRTGRSIVYSCEWPLY--- 930
                DA+TFAEW VD+LK DGC+  + +  A GY +M+ ALN TGR I +SC WP Y   
Sbjct: 137  KVVQDAQTFAEWKVDMLKLDGCF-STPEERAQGYPKMAAALNATGRPIAFSCSWPAYEGG 195

Query: 931  MQPFFKPNYTEIREYCNHWRNFADIYDSWQSIKNILDWTSSNQEKIVPVAGPGGWNDPDM 1110
            + P  + NY+ + + CN WRN+ DI DSW S+ +IL+W   +Q+ + PVAGPG WNDPDM
Sbjct: 196  LPP--RVNYSLLADICNLWRNYDDIQDSWWSVLSILNWFVEHQDILQPVAGPGHWNDPDM 253

Query: 1111 LVIGNFGLSWNQEVTQMALWAIMAAPLLMSNDLRHISPKAKALLQDKDVIAINXDPLGKQ 1290
            L+IGNFGLS  Q   QMALW ++AAPLLMS DLR IS +   +LQ+  +I IN DPLG Q
Sbjct: 254  LLIGNFGLSLEQSRAQMALWTVLAAPLLMSTDLRTISAQNMDILQNPLMIKINQDPLGIQ 313

Query: 1291 GHRLRKDXH-FEVWERPLLNLAWAV 1362
            G R+ K+    EV+ RPL N A A+
Sbjct: 314  GRRIHKEKSLIEVYMRPLSNKASAL 338


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 56,424,101
Number of extensions: 1568941
Number of successful extensions: 4492
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4486
Number of HSP's successfully gapped: 2
Length of query: 458
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 352
Effective length of database: 14,802,980
Effective search space: 5210648960
Effective search space used: 5210648960
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002451
         (1376 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_038491.2| alpha-galactosidase A [Mus musculus].                604   e-173
Alignment   gi|NP_032695.3| alpha-N-acetylgalactosaminidase precursor [Mus ...   384   e-107

>ref|NP_038491.2| alpha-galactosidase A [Mus musculus].
          Length = 421

 Score =  604 bits (1558), Expect = e-173
 Identities = 279/355 (78%), Positives = 314/355 (88%)
 Frame = +1

Query: 310  MKPVSRVRRLGYVLPFCFLAQVLWGVPGARALNNGLARTPTMGWLHWERFMCNVDCQEDP 489
            MK +SR  RL   L  C LA V W + G RAL+NGLARTPTMGWLHWERFMCN+DCQE+P
Sbjct: 3    MKLLSRDTRLVCELALCPLALVFWSILGVRALDNGLARTPTMGWLHWERFMCNLDCQEEP 62

Query: 490  DSCISEKLFRQIAELMASDGWKDAGYEYLCIDDCWMAPKRDSQGRLQADPKRFPGGIRRL 669
            D+CISE+LF Q+AELM SDGW+DAGY+YLCIDDCWMAP+RDS+GRLQADP+RFP GI+ L
Sbjct: 63   DACISEQLFMQMAELMVSDGWRDAGYDYLCIDDCWMAPERDSKGRLQADPQRFPSGIKHL 122

Query: 670  ADYVHSKGLKLGIYADVGNKTCAGFPGSFGYYDIDAKTFAEWGVDLLKFDGCYCDSVKHL 849
            A+YVHSKGLKLGIYADVGNKTCAGFPGSFG YDIDA+TFA+WGVDLLKFDGC+CDSV  L
Sbjct: 123  ANYVHSKGLKLGIYADVGNKTCAGFPGSFGSYDIDAQTFADWGVDLLKFDGCHCDSVVSL 182

Query: 850  ADGYKQMSLALNRTGRSIVYSCEWPLYMQPFFKPNYTEIREYCNHWRNFADIYDSWQSIK 1029
             +GYK M+LALNRTGRSIVYSCEWPLY++PF KPNYT+I+ YCNHWRNF D+YDSW+SIK
Sbjct: 183  ENGYKYMALALNRTGRSIVYSCEWPLYLRPFHKPNYTDIQYYCNHWRNFDDVYDSWESIK 242

Query: 1030 NILDWTSSNQEKIVPVAGPGGWNDPDMLVIGNFGLSWNQEVTQMALWAIMAAPLLMSNDL 1209
            NIL WT   Q++IV VAGPG WNDPDMLVIGNFGLSW+Q+VTQMALWAIMAAPLLMSNDL
Sbjct: 243  NILSWTVVYQKEIVEVAGPGSWNDPDMLVIGNFGLSWDQQVTQMALWAIMAAPLLMSNDL 302

Query: 1210 RHISPKAKALLQDKDVIAINXDPLGKQGHRLRKDXHFEVWERPLLNLAWAVAMVN 1374
            R IS +AKALLQ+KDVIAIN DPLGKQG+  RK+ H EVWERPL NLAWAVA+ N
Sbjct: 303  RQISSQAKALLQNKDVIAINQDPLGKQGYCFRKENHIEVWERPLSNLAWAVAVRN 357


>ref|NP_032695.3| alpha-N-acetylgalactosaminidase precursor [Mus musculus].
          Length = 415

 Score =  384 bits (986), Expect = e-107
 Identities = 194/344 (56%), Positives = 241/344 (70%), Gaps = 5/344 (1%)
 Frame = +1

Query: 346  VLPFCFLAQVLWGVPGARALNNGLARTPTMGWLHWERFMCNVDCQEDPDSCISEKLFRQI 525
            VL    +AQVL        L NGL RTP MGWL WERF CN+DC EDP +CISE+LF ++
Sbjct: 6    VLLLALVAQVLM-------LENGLLRTPPMGWLAWERFRCNIDCVEDPKNCISERLFMEM 58

Query: 526  AELMASDGWKDAGYEYLCIDDCWMAPKRDSQGRLQADPKRFPGGIRRLADYVHSKGLKLG 705
            A+ +A DGW+D GY YL IDDCW+   RD+ GRL  DPKRFP GI  LADY HS GLKLG
Sbjct: 59   ADRLAQDGWRDLGYVYLNIDDCWIGG-RDASGRLIPDPKRFPHGIAFLADYAHSLGLKLG 117

Query: 706  IYADVGNKTCAGFPGS-FGYYDIDAKTFAEWGVDLLKFDGCYCDSVKHLADGYKQMSLAL 882
            IY D+G  TC G+PG+     ++DA+TFAEW VD+LK DGC+  S +  A+GY +M+ AL
Sbjct: 118  IYEDMGKMTCMGYPGTTLDKVELDAETFAEWKVDMLKLDGCFSSS-RERAEGYPKMAAAL 176

Query: 883  NRTGRSIVYSCEWPLY---MQPFFKPNYTEIREYCNHWRNFADIYDSWQSIKNILDWTSS 1053
            N TGR I +SC WP Y   + P  K NYTE+   CN WRN+ DI DSW+S+ +ILDW   
Sbjct: 177  NATGRPIAFSCSWPAYEGGLPP--KVNYTEVSRVCNLWRNYKDIQDSWKSVLSILDWFVR 234

Query: 1054 NQEKIVPVAGPGGWNDPDMLVIGNFGLSWNQEVTQMALWAIMAAPLLMSNDLRHISPKAK 1233
            +Q+ + PVAGPG WNDPDML+IGNFGLS+++   QMALW ++AAPLLMS DLR ISP+  
Sbjct: 235  HQDVLQPVAGPGHWNDPDMLLIGNFGLSFDESRAQMALWTVLAAPLLMSTDLRTISPQNM 294

Query: 1234 ALLQDKDVIAINXDPLGKQGHR-LRKDXHFEVWERPLLNLAWAV 1362
             +LQ+  +I IN DPLG QG R L+   H EV++R L N A A+
Sbjct: 295  DILQNPLMIKINQDPLGIQGRRILKSKSHIEVFKRYLSNQASAL 338


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 47,833,600
Number of extensions: 1317332
Number of successful extensions: 3719
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3711
Number of HSP's successfully gapped: 2
Length of query: 458
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 353
Effective length of database: 12,463,779
Effective search space: 4399713987
Effective search space used: 4399713987
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002451
         (1376 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001171396.1| alpha-galactosidase A [Sus scrofa].               758   0.0  
Alignment   gi|NP_001116694.1| alpha-N-acetylgalactosaminidase [Sus scrofa].     365   e-101

>ref|NP_001171396.1| alpha-galactosidase A [Sus scrofa].
          Length = 433

 Score =  758 bits (1957), Expect = 0.0
 Identities = 353/359 (98%), Positives = 357/359 (99%)
 Frame = +1

Query: 298  MTATMKPVSRVRRLGYVLPFCFLAQVLWGVPGARALNNGLARTPTMGWLHWERFMCNVDC 477
            MTATMKPVSRVRRLGYVLPFCFLAQVLWGVPGARALNNGLARTPTMGWLHWERFMCNVDC
Sbjct: 1    MTATMKPVSRVRRLGYVLPFCFLAQVLWGVPGARALNNGLARTPTMGWLHWERFMCNVDC 60

Query: 478  QEDPDSCISEKLFRQIAELMASDGWKDAGYEYLCIDDCWMAPKRDSQGRLQADPKRFPGG 657
            QEDPDSCISEKLFRQIAELMASDGWKDAGYEYLCIDDCWMAPKRDSQGRLQADPKRFPGG
Sbjct: 61   QEDPDSCISEKLFRQIAELMASDGWKDAGYEYLCIDDCWMAPKRDSQGRLQADPKRFPGG 120

Query: 658  IRRLADYVHSKGLKLGIYADVGNKTCAGFPGSFGYYDIDAKTFAEWGVDLLKFDGCYCDS 837
            IRRLADYVHSKGLKLGIYADVGNKTCAGFPGSFGYYDIDAKTFAEWGVDLLKFDGCYCDS
Sbjct: 121  IRRLADYVHSKGLKLGIYADVGNKTCAGFPGSFGYYDIDAKTFAEWGVDLLKFDGCYCDS 180

Query: 838  VKHLADGYKQMSLALNRTGRSIVYSCEWPLYMQPFFKPNYTEIREYCNHWRNFADIYDSW 1017
            +KHLADGYKQMSLALNRTGRSIVYSCEWPLYMQPFFKPNYTEIREYCNHWRNFADIYDSW
Sbjct: 181  IKHLADGYKQMSLALNRTGRSIVYSCEWPLYMQPFFKPNYTEIREYCNHWRNFADIYDSW 240

Query: 1018 QSIKNILDWTSSNQEKIVPVAGPGGWNDPDMLVIGNFGLSWNQEVTQMALWAIMAAPLLM 1197
            QSIKNILDWTSSNQEKIVPVAGPGGWNDPDMLVIGNFGLSWNQ+VTQMALWAIMAAPLLM
Sbjct: 241  QSIKNILDWTSSNQEKIVPVAGPGGWNDPDMLVIGNFGLSWNQQVTQMALWAIMAAPLLM 300

Query: 1198 SNDLRHISPKAKALLQDKDVIAINXDPLGKQGHRLRKDXHFEVWERPLLNLAWAVAMVN 1374
            SNDLRHISP+AKALLQDKDVIAIN DPLGKQGHRLRKD +FEVWERPLLNLAWAVAMVN
Sbjct: 301  SNDLRHISPEAKALLQDKDVIAINQDPLGKQGHRLRKDNNFEVWERPLLNLAWAVAMVN 359


>ref|NP_001116694.1| alpha-N-acetylgalactosaminidase [Sus scrofa].
          Length = 411

 Score =  365 bits (936), Expect = e-101
 Identities = 182/325 (56%), Positives = 229/325 (70%), Gaps = 5/325 (1%)
 Frame = +1

Query: 403  LNNGLARTPTMGWLHWERFMCNVDCQEDPDSCISEKLFRQIAELMASDGWKDAGYEYLCI 582
            L NGL R P MGWL WERF CN+DC EDP +CISE+LF ++A+ +A DGW+D GY YL I
Sbjct: 18   LENGLLRKPPMGWLGWERFRCNIDCDEDPKNCISERLFMEMADRLAQDGWRDLGYVYLNI 77

Query: 583  DDCWMAPKRDSQGRLQADPKRFPGGIRRLADYVHSKGLKLGIYADVGNKTCAGFPGS-FG 759
            DDCW+   RD++G L  DPKRFP GI  LADY HS GLKLGIY D+G+ TC G+PG+   
Sbjct: 78   DDCWIGG-RDAKGNLMPDPKRFPHGIAFLADYAHSLGLKLGIYDDLGSFTCMGYPGTTLD 136

Query: 760  YYDIDAKTFAEWGVDLLKFDGCYCDSVKHLADGYKQMSLALNRTGRSIVYSCEWPLY--- 930
                DA TFAEW VD+L  DGC+  + K  ADGY +M+ ALN TGR I +SC WP Y   
Sbjct: 137  KVVHDAHTFAEWKVDMLNLDGCF-STHKERADGYPKMAAALNATGRPIAFSCSWPAYEGG 195

Query: 931  MQPFFKPNYTEIREYCNHWRNFADIYDSWQSIKNILDWTSSNQEKIVPVAGPGGWNDPDM 1110
            + P  + NY+ + + CN WRN+ DI DSW S+ +ILDW  ++Q+ + PVAGPG WNDPDM
Sbjct: 196  LPP--RVNYSLLADICNLWRNYDDIQDSWWSVLSILDWFVAHQDILQPVAGPGHWNDPDM 253

Query: 1111 LVIGNFGLSWNQEVTQMALWAIMAAPLLMSNDLRHISPKAKALLQDKDVIAINXDPLGKQ 1290
            L+IGNFGLS+ Q  +QMALW ++AAPL MS DLR IS +   +LQ+  +I IN DPLG Q
Sbjct: 254  LLIGNFGLSFEQAQSQMALWTVLAAPLFMSTDLRTISAQNVDILQNTLMIKINQDPLGIQ 313

Query: 1291 GHRLRKDXHF-EVWERPLLNLAWAV 1362
            G R+ K+  F +V+ RPL N A A+
Sbjct: 314  GRRVLKEKSFIDVFMRPLANEACAL 338


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 35,464,004
Number of extensions: 989383
Number of successful extensions: 2822
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2818
Number of HSP's successfully gapped: 2
Length of query: 458
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 356
Effective length of database: 8,804,438
Effective search space: 3134379928
Effective search space used: 3134379928
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002451
         (1376 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GL896183.1| Sus scrofa unplaced genomic scaffold chrU_scaffol...   989   0.0  

>gb|GL896183.1| Sus scrofa unplaced genomic scaffold chrU_scaffold549
          Length = 126171

 Score =  989 bits (499), Expect = 0.0
 Identities = 502/503 (99%)
 Strand = Plus / Minus

                                                                         
Query: 1     ctgctcggctctaccgcgggatcattaaagtgccgcacttccttctggtatgacaatagg 60
             ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82728 ctgctcggctctaccccgggatcattaaagtgccgcacttccttctggtatgacaatagg 82669

                                                                         
Query: 61    gcgggtcgatattcagaaaaagatggtatggttggtggcggggcgtcttctctgactggt 120
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82668 gcgggtcgatattcagaaaaagatggtatggttggtggcggggcgtcttctctgactggt 82609

                                                                         
Query: 121   tattggtccgcctctggggataaccatcccagttgccggagaaacagtttcgtcattgct 180
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82608 tattggtccgcctctggggataaccatcccagttgccggagaaacagtttcgtcattgct 82549

                                                                         
Query: 181   taacaactcaccgatgattgggtaggcgagcgaagttgggttccgcgggccgcctccgcc 240
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82548 taacaactcaccgatgattgggtaggcgagcgaagttgggttccgcgggccgcctccgcc 82489

                                                                         
Query: 241   tttttagcccttaagaacctagaagcccaggtgactcctggagatctctgttgcgtgatg 300
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82488 tttttagcccttaagaacctagaagcccaggtgactcctggagatctctgttgcgtgatg 82429

                                                                         
Query: 301   acagctacgatgaagccggtgagcagggtccggcggctgggctacgtgctgccattttgc 360
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82428 acagctacgatgaagccggtgagcagggtccggcggctgggctacgtgctgccattttgc 82369

                                                                         
Query: 361   ttcctggcccaggttctctggggcgtcccaggggcccgggccctgaacaacggcttggcg 420
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82368 ttcctggcccaggttctctggggcgtcccaggggcccgggccctgaacaacggcttggcg 82309

                                                                         
Query: 421   aggacccctaccatgggctggctgcactgggagcgcttcatgtgcaatgtggactgtcaa 480
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82308 aggacccctaccatgggctggctgcactgggagcgcttcatgtgcaatgtggactgtcaa 82249

                                    
Query: 481   gaagatccggattcctgtatcag 503
             |||||||||||||||||||||||
Sbjct: 82248 gaagatccggattcctgtatcag 82226



 Score =  391 bits (197), Expect = e-106
 Identities = 199/200 (99%)
 Strand = Plus / Minus

                                                                         
Query: 1110  gctggtgattggcaactttggcctcagctggaatcaggaggtaactcagatggccctctg 1169
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75622 gctggtgattggcaactttggcctcagctggaatcaggaggtaactcagatggccctctg 75563

                                                                         
Query: 1170  ggctatcatggctgctccattactcatgtccaatgacctccgacacatcagccccaaagc 1229
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75562 ggctatcatggctgctccattactcatgtccaatgacctccgacacatcagccccaaagc 75503

                                                                         
Query: 1230  caaagctcttcttcaggataaagatgtaatagccatcaaccnagaccccctgggcaagca 1289
             ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 75502 caaagctcttcttcaggataaagatgtaatagccatcaaccaagaccccctgggcaagca 75443

                                 
Query: 1290  ggggcaccggctcagaaagg 1309
             ||||||||||||||||||||
Sbjct: 75442 ggggcaccggctcagaaagg 75423



 Score =  359 bits (181), Expect = 3e-96
 Identities = 181/181 (100%)
 Strand = Plus / Minus

                                                                         
Query: 500   tcagcgagaagctcttccggcagatagctgagctcatggcctcagatggctggaaggatg 559
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79956 tcagcgagaagctcttccggcagatagctgagctcatggcctcagatggctggaaggatg 79897

                                                                         
Query: 560   caggttatgagtacctatgcattgatgactgttggatggctcccaaaagggattcccaag 619
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79896 caggttatgagtacctatgcattgatgactgttggatggctcccaaaagggattcccaag 79837

                                                                         
Query: 620   gcagacttcaggcagaccctaaacgctttcctggtgggatccgccgcctagccgattatg 679
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79836 gcagacttcaggcagaccctaaacgctttcctggtgggatccgccgcctagccgattatg 79777

              
Query: 680   t 680
             |
Sbjct: 79776 t 79776



 Score =  357 bits (180), Expect = 1e-95
 Identities = 180/180 (100%)
 Strand = Plus / Minus

                                                                         
Query: 679   gtccacagcaaaggactgaagctagggatttatgcagatgttggaaataaaacctgtgct 738
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78490 gtccacagcaaaggactgaagctagggatttatgcagatgttggaaataaaacctgtgct 78431

                                                                         
Query: 739   ggcttccctggcagttttggttactatgacattgatgccaagacctttgctgagtgggga 798
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78430 ggcttccctggcagttttggttactatgacattgatgccaagacctttgctgagtgggga 78371

                                                                         
Query: 799   gttgatctgctcaaattcgatggttgttactgtgacagtgtaaaacatttggcagacggt 858
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78370 gttgatctgctcaaattcgatggttgttactgtgacagtgtaaaacatttggcagacggt 78311



 Score =  325 bits (164), Expect = 4e-86
 Identities = 164/164 (100%)
 Strand = Plus / Minus

                                                                         
Query: 947   agcccaattacaccgaaatccgagagtactgcaatcactggagaaattttgctgacattt 1006
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75993 agcccaattacaccgaaatccgagagtactgcaatcactggagaaattttgctgacattt 75934

                                                                         
Query: 1007  atgattcctggcaaagtataaagaatattttggactggacatcttctaaccaggagaaaa 1066
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75933 atgattcctggcaaagtataaagaatattttggactggacatcttctaaccaggagaaaa 75874

                                                         
Query: 1067  ttgttcctgttgcaggaccagggggttggaatgatccagatatg 1110
             ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75873 ttgttcctgttgcaggaccagggggttggaatgatccagatatg 75830



 Score =  184 bits (93), Expect = 9e-44
 Identities = 93/93 (100%)
 Strand = Plus / Minus

                                                                         
Query: 856   ggttataagcaaatgtccttggccctgaacaggactggcagaagcattgtgtactcctgt 915
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77470 ggttataagcaaatgtccttggccctgaacaggactggcagaagcattgtgtactcctgt 77411

                                              
Query: 916   gagtggcccctttatatgcagcccttttttaag 948
             |||||||||||||||||||||||||||||||||
Sbjct: 77410 gagtggcccctttatatgcagcccttttttaag 77378



 Score =  125 bits (63), Expect = 7e-26
 Identities = 68/70 (97%)
 Strand = Plus / Minus

                                                                         
Query: 1307  aggacaancactttgaagtgtgggaaaggcctctcttgaacttagcctgggctgtggcta 1366
             |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75068 aggacaacaactttgaagtgtgggaaaggcctctcttgaacttagcctgggctgtggcta 75009

                       
Query: 1367  tggtaaacct 1376
             ||||||||||
Sbjct: 75008 tggtaaacct 74999


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 38,732,996
Number of extensions: 180
Number of successful extensions: 180
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 180
Number of HSP's successfully gapped: 7
Length of query: 1376
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1355
Effective length of database: 2,808,413,156
Effective search space: 3805399826380
Effective search space used: 3805399826380
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)