Animal-Genome cDNA 20110601C-002455

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002455
         (2435 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001076935.1| heterogeneous nuclear ribonucleoprotein U-li...   994   0.0  
Alignment   gi|NP_001070388.2| heterogeneous nuclear ribonucleoprotein U [B...   521   e-147
Alignment   gi|NP_001193174.1| heterogeneous nuclear ribonucleoprotein U-li...   438   e-123
Alignment   gi|XP_002699340.1| PREDICTED: heterogeneous nuclear ribonucleop...   438   e-123
Alignment   gi|XP_002688285.1| PREDICTED: heterogeneous nuclear ribonucleop...   356   6e-98
Alignment   gi|XP_001787980.1| PREDICTED: heterogeneous nuclear ribonucleop...   356   6e-98
Alignment   gi|NP_001068936.1| ATP-dependent RNA helicase DDX1 [Bos taurus].     112   2e-24
Alignment   gi|NP_001179993.1| E3 ubiquitin-protein ligase RNF123 [Bos taur...    58   3e-08
Alignment   gi|XP_002697083.1| PREDICTED: ring finger protein 123-like [Bos...    58   3e-08

>ref|NP_001076935.1| heterogeneous nuclear ribonucleoprotein U-like protein 1 [Bos
            taurus].
          Length = 858

 Score =  994 bits (2570), Expect(2) = 0.0
 Identities = 485/502 (96%), Positives = 489/502 (97%)
 Frame = +2

Query: 365  VMDNITRQNQFYETPVIKQENESGYERRPLEMEQQQQAYRPEVKTEMKQEAPTSFLPPEA 544
            VMDNIT QNQFYET VIKQENESGYERRPLE++QQQQAYRPEVKTEMKQEAPTSFLPPEA
Sbjct: 100  VMDNITMQNQFYETQVIKQENESGYERRPLEIDQQQQAYRPEVKTEMKQEAPTSFLPPEA 159

Query: 545  SQLKPDRQQFQSRKRPYEENRGRGYFEHREERRGRSPQPPAXXXXXXXXXTLVAIDTYNC 724
            SQ KPDRQQFQSRKRPYEENRGRGYFEHRE+RRGRSPQPPA         TLVAIDTYNC
Sbjct: 160  SQHKPDRQQFQSRKRPYEENRGRGYFEHREDRRGRSPQPPAEEDEDDFDDTLVAIDTYNC 219

Query: 725  DLHFKVARDRSSGYPLTIEGFAYLWSGARASYGVRRGRVCFEMKINEEISVKHLPSTEPD 904
            DLHFKVARDRSSGYPLTIEGFAYLWSGARASYGVRRGRVCFEMKINEEISVKHLPSTEPD
Sbjct: 220  DLHFKVARDRSSGYPLTIEGFAYLWSGARASYGVRRGRVCFEMKINEEISVKHLPSTEPD 279

Query: 905  PHVVRIGWSLDSCSTQLGEEPFSYGYGGTGKKSTNSRFENYGDKFAENDVIGCFVDFECG 1084
            PHVVRIGWSLDSCSTQLGEEPFSYGYGGTGKKSTNSRFENYGDKFAENDVIGCF DFECG
Sbjct: 280  PHVVRIGWSLDSCSTQLGEEPFSYGYGGTGKKSTNSRFENYGDKFAENDVIGCFADFECG 339

Query: 1085 NDVELSFTKNGKWMGIAFRIQKEALGGQALYPHVLVKNCAVEFNFGQRAEPYCSVLPGFT 1264
            NDVELSFTKNGKWMGIAFRIQKEALGGQALYPHVLVKNCAVEFNFGQRAEPYCSVLPGFT
Sbjct: 340  NDVELSFTKNGKWMGIAFRIQKEALGGQALYPHVLVKNCAVEFNFGQRAEPYCSVLPGFT 399

Query: 1265 FIQHLPLSERIRGTVGPKSKAECEILMMVGLPAAGKTTWAIKHAASNPSKKYNILGTNAI 1444
            FIQHLPLSERIRGTVGPKSKAECEILMMVGLPAAGKTTWAIKHAASNPSKKYNILGTNAI
Sbjct: 400  FIQHLPLSERIRGTVGPKSKAECEILMMVGLPAAGKTTWAIKHAASNPSKKYNILGTNAI 459

Query: 1445 MDKMRVMGLRRQRNYAGRWDVLIQQATQCLNRLIQIAARKKRNYILDQTNVYGSAQRRKM 1624
            MDKMRVMGLRRQRNYAGRWDVLIQQATQCLNRLIQIAARKKRNYILDQTNVYGSAQRRKM
Sbjct: 460  MDKMRVMGLRRQRNYAGRWDVLIQQATQCLNRLIQIAARKKRNYILDQTNVYGSAQRRKM 519

Query: 1625 RPFEGFQRKAIVICPTDEDLKDRTIKRTDEEGKDVPDHAVLEMKANFTLPDVGDFLDEVL 1804
            RPFEGFQRKAIVICPTDEDLKDRTIKRTDEEGKDVPDHAVLEMKANFTLPDVGDFLDEVL
Sbjct: 520  RPFEGFQRKAIVICPTDEDLKDRTIKRTDEEGKDVPDHAVLEMKANFTLPDVGDFLDEVL 579

Query: 1805 FIELQREEADKLVRQYNEEGRK 1870
            FIELQREEADKLVRQYNEEGR+
Sbjct: 580  FIELQREEADKLVRQYNEEGRR 601



 Score = 58.2 bits (139), Expect(2) = 0.0
 Identities = 32/64 (50%), Positives = 34/64 (53%)
 Frame = +3

Query: 174 MDVRRLKVNELREELQRRGLDTRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRPGHN 353
           MDVRRLKVNELREELQRRGLDTRG                              GRPGHN
Sbjct: 1   MDVRRLKVNELREELQRRGLDTRGLKAELAERLQAALEAEEPDDERELEADDEPGRPGHN 60

Query: 354 SEEM 365
           +EE+
Sbjct: 61  NEEV 64



 Score = 59.3 bits (142), Expect = 2e-08
 Identities = 32/58 (55%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
 Frame = +3

Query: 1920 SYSPARNPPGASSYNKNSNIPGSSAN-XXXXXXXXXXXXXXXXXXXXXXXGGYSQGYT 2090
            +YSPARNPPGAS YNKNSNIPGSSAN                        GGYSQGYT
Sbjct: 717  TYSPARNPPGASGYNKNSNIPGSSANTSTPPVSSYSPPQPSYSQPPPYNQGGYSQGYT 774


>ref|NP_001070388.2| heterogeneous nuclear ribonucleoprotein U [Bos taurus].
          Length = 825

 Score =  521 bits (1342), Expect = e-147
 Identities = 253/432 (58%), Positives = 322/432 (74%), Gaps = 3/432 (0%)
 Frame = +2

Query: 584  KRPYEENRGRGYFEHREER---RGRSPQPPAXXXXXXXXXTLVAIDTYNCDLHFKVARDR 754
            KRP E++ GRGYFE+ EE    R +SPQPP          T+V +DTYNCDLHFK++RDR
Sbjct: 247  KRPREDH-GRGYFEYIEENKYSRAKSPQPPVEEEDEHFDDTVVCLDTYNCDLHFKISRDR 305

Query: 755  SSGYPLTIEGFAYLWSGARASYGVRRGRVCFEMKINEEISVKHLPSTEPDPHVVRIGWSL 934
             S   LT+E FA+LW+G RASYGV +G+VCFEMK+ E+I V+HL + + D H VRIGWSL
Sbjct: 306  LSASSLTMESFAFLWAGGRASYGVSKGKVCFEMKVTEKIPVRHLYTKDIDIHEVRIGWSL 365

Query: 935  DSCSTQLGEEPFSYGYGGTGKKSTNSRFENYGDKFAENDVIGCFVDFECGNDVELSFTKN 1114
             +    LGEE FSYGY   G K+ N   E+YG+KF ENDVI CF +FE  ++VELS+ KN
Sbjct: 366  TTSGMLLGEEEFSYGYSLKGIKTCNCETEDYGEKFDENDVITCFANFE-SDEVELSYAKN 424

Query: 1115 GKWMGIAFRIQKEALGGQALYPHVLVKNCAVEFNFGQRAEPYCSVLPGFTFIQHLPLSER 1294
            G+ +GIAF+I KE L G+ L+PHVL  NCAVEFNFGQ+ +PY  +   +TFIQ++PL +R
Sbjct: 425  GQDLGIAFKISKEVLAGRPLFPHVLCHNCAVEFNFGQKEKPYFPIPEDYTFIQNVPLEDR 484

Query: 1295 IRGTVGPKSKAECEILMMVGLPAAGKTTWAIKHAASNPSKKYNILGTNAIMDKMRVMGLR 1474
            +RG  GP+ K +CE++MM+GLP AGKTTW  KHAA NP K YNILGTN IMDKM V G +
Sbjct: 485  VRGPKGPEEKKDCEVVMMIGLPGAGKTTWVTKHAAENPGK-YNILGTNTIMDKMMVAGFK 543

Query: 1475 RQRNYAGRWDVLIQQATQCLNRLIQIAARKKRNYILDQTNVYGSAQRRKMRPFEGFQRKA 1654
            +Q    G+ + L+Q+A QCL + I+IAARKKRN+ILDQTNV  +AQRRKM  F GFQRKA
Sbjct: 544  KQMADTGKLNTLLQRAPQCLGKFIEIAARKKRNFILDQTNVSAAAQRRKMCLFAGFQRKA 603

Query: 1655 IVICPTDEDLKDRTIKRTDEEGKDVPDHAVLEMKANFTLPDVGDFLDEVLFIELQREEAD 1834
            +V+CP DED K RT K+ + EGKD+P+HAVL+MK NFTLP+V +  DE+ ++ELQ+EEA 
Sbjct: 604  VVVCPKDEDYKQRTQKKAEVEGKDLPEHAVLKMKGNFTLPEVAECFDEITYVELQKEEAQ 663

Query: 1835 KLVRQYNEEGRK 1870
            KL+ QY EE +K
Sbjct: 664  KLLEQYKEESKK 675


>ref|NP_001193174.1| heterogeneous nuclear ribonucleoprotein U-like protein 2 [Bos
            taurus].
          Length = 749

 Score =  438 bits (1127), Expect = e-123
 Identities = 219/434 (50%), Positives = 297/434 (68%), Gaps = 4/434 (0%)
 Frame = +2

Query: 581  RKRPYEENRGRGYFEHREER---RGRSPQPPAXXXXXXXXX-TLVAIDTYNCDLHFKVAR 748
            R+R  ++  GR Y+E REE    R +SP PP           TLV +DTY  DLHF+V++
Sbjct: 203  RQRDEKDEHGRAYYEFREEAYHSRSKSPPPPEEEVKDEEEDHTLVNLDTYTSDLHFQVSK 262

Query: 749  DRSSGYPLTIEGFAYLWSGARASYGVRRGRVCFEMKINEEISVKHLPSTEPDPHVVRIGW 928
            DR  G PL  E F  LWSGAR++YGV +G+VCFE K+ + + +K    TE    ++R+GW
Sbjct: 263  DRYGGQPLFSEKFPTLWSGARSTYGVTKGKVCFEAKVTQNLPMKE-GCTEVS--LLRVGW 319

Query: 929  SLDSCSTQLGEEPFSYGYGGTGKKSTNSRFENYGDKFAENDVIGCFVDFECGNDVELSFT 1108
            S+D    QLGE+ FSYG+ G G K+ N +FE +G  F ENDVIGCF +FE   +VELSF+
Sbjct: 320  SVDFSHPQLGEDEFSYGFDGRGLKAENGQFEEFGQTFGENDVIGCFANFEA-EEVELSFS 378

Query: 1109 KNGKWMGIAFRIQKEALGGQALYPHVLVKNCAVEFNFGQRAEPYCSVLPGFTFIQHLPLS 1288
            KNG+ +G+AFRI KE+L  +AL PHVL KNC VE NFGQ+ EP+      F FI  +P+ 
Sbjct: 379  KNGEDLGVAFRISKESLADRALLPHVLCKNCVVELNFGQKEEPFFPPPEEFVFIHAVPVE 438

Query: 1289 ERIRGTVGPKSKAECEILMMVGLPAAGKTTWAIKHAASNPSKKYNILGTNAIMDKMRVMG 1468
            ER+R  V PK+  ECE+++MVGLPA+GKT WA+K+A  NP K+YN+LG   ++++MR+ G
Sbjct: 439  ERVRTAVPPKTIEECEVILMVGLPASGKTQWALKYAKENPEKRYNVLGAETVLNQMRMKG 498

Query: 1469 LRRQRNYAGRWDVLIQQATQCLNRLIQIAARKKRNYILDQTNVYGSAQRRKMRPFEGFQR 1648
            L          D+L+QQA+QCL++L+QIA+R KRN+ILDQ NVY S QRRK+  F+ F R
Sbjct: 499  LEEPEMDPKSRDLLVQQASQCLSKLVQIASRTKRNFILDQCNVYNSGQRRKLLLFKTFSR 558

Query: 1649 KAIVICPTDEDLKDRTIKRTDEEGKDVPDHAVLEMKANFTLPDVGDFLDEVLFIELQREE 1828
            K +V+ P +ED K R   R + EG DVP+  +LEMKANF+LP+  D++DEV + EL++EE
Sbjct: 559  KVVVVVPNEEDWKKRLELRKEVEGDDVPESIMLEMKANFSLPEKCDYMDEVTYGELEKEE 618

Query: 1829 ADKLVRQYNEEGRK 1870
            A  +V +Y EE RK
Sbjct: 619  AQPIVTKYKEEARK 632


>ref|XP_002699340.1| PREDICTED: heterogeneous nuclear ribonucleoprotein U-like [Bos
            taurus].
          Length = 749

 Score =  438 bits (1127), Expect = e-123
 Identities = 219/434 (50%), Positives = 297/434 (68%), Gaps = 4/434 (0%)
 Frame = +2

Query: 581  RKRPYEENRGRGYFEHREER---RGRSPQPPAXXXXXXXXX-TLVAIDTYNCDLHFKVAR 748
            R+R  ++  GR Y+E REE    R +SP PP           TLV +DTY  DLHF+V++
Sbjct: 203  RQRDEKDEHGRAYYEFREEAYHSRSKSPPPPEEEVKDEEEDHTLVNLDTYTSDLHFQVSK 262

Query: 749  DRSSGYPLTIEGFAYLWSGARASYGVRRGRVCFEMKINEEISVKHLPSTEPDPHVVRIGW 928
            DR  G PL  E F  LWSGAR++YGV +G+VCFE K+ + + +K    TE    ++R+GW
Sbjct: 263  DRYGGQPLFSEKFPTLWSGARSTYGVTKGKVCFEAKVTQNLPMKE-GCTEVS--LLRVGW 319

Query: 929  SLDSCSTQLGEEPFSYGYGGTGKKSTNSRFENYGDKFAENDVIGCFVDFECGNDVELSFT 1108
            S+D    QLGE+ FSYG+ G G K+ N +FE +G  F ENDVIGCF +FE   +VELSF+
Sbjct: 320  SVDFSHPQLGEDEFSYGFDGRGLKAENGQFEEFGQTFGENDVIGCFANFEA-EEVELSFS 378

Query: 1109 KNGKWMGIAFRIQKEALGGQALYPHVLVKNCAVEFNFGQRAEPYCSVLPGFTFIQHLPLS 1288
            KNG+ +G+AFRI KE+L  +AL PHVL KNC VE NFGQ+ EP+      F FI  +P+ 
Sbjct: 379  KNGEDLGVAFRISKESLADRALLPHVLCKNCVVELNFGQKEEPFFPPPEEFVFIHAVPVE 438

Query: 1289 ERIRGTVGPKSKAECEILMMVGLPAAGKTTWAIKHAASNPSKKYNILGTNAIMDKMRVMG 1468
            ER+R  V PK+  ECE+++MVGLPA+GKT WA+K+A  NP K+YN+LG   ++++MR+ G
Sbjct: 439  ERVRTAVPPKTIEECEVILMVGLPASGKTQWALKYAKENPEKRYNVLGAETVLNQMRMKG 498

Query: 1469 LRRQRNYAGRWDVLIQQATQCLNRLIQIAARKKRNYILDQTNVYGSAQRRKMRPFEGFQR 1648
            L          D+L+QQA+QCL++L+QIA+R KRN+ILDQ NVY S QRRK+  F+ F R
Sbjct: 499  LEEPEMDPKSRDLLVQQASQCLSKLVQIASRTKRNFILDQCNVYNSGQRRKLLLFKTFSR 558

Query: 1649 KAIVICPTDEDLKDRTIKRTDEEGKDVPDHAVLEMKANFTLPDVGDFLDEVLFIELQREE 1828
            K +V+ P +ED K R   R + EG DVP+  +LEMKANF+LP+  D++DEV + EL++EE
Sbjct: 559  KVVVVVPNEEDWKKRLELRKEVEGDDVPESIMLEMKANFSLPEKCDYMDEVTYGELEKEE 618

Query: 1829 ADKLVRQYNEEGRK 1870
            A  +V +Y EE RK
Sbjct: 619  AQPIVTKYKEEARK 632


>ref|XP_002688285.1| PREDICTED: heterogeneous nuclear ribonucleoprotein U-like 1-like [Bos
            taurus].
          Length = 232

 Score =  356 bits (913), Expect = 6e-98
 Identities = 179/228 (78%), Positives = 187/228 (82%)
 Frame = +2

Query: 386  QNQFYETPVIKQENESGYERRPLEMEQQQQAYRPEVKTEMKQEAPTSFLPPEASQLKPDR 565
            QNQFYET VIKQE ESGY+R+ LEM+QQQQAY PEVKTEMKQEAPTSFLPPEASQ KPDR
Sbjct: 2    QNQFYETQVIKQEKESGYKRKLLEMDQQQQAYCPEVKTEMKQEAPTSFLPPEASQHKPDR 61

Query: 566  QQFQSRKRPYEENRGRGYFEHREERRGRSPQPPAXXXXXXXXXTLVAIDTYNCDLHFKVA 745
            QQFQS KR YEEN+GRGYFEHRE+RRGRS QP A         TLVAIDTYNCDLHFKVA
Sbjct: 62   QQFQSCKRLYEENQGRGYFEHREDRRGRSLQPLAEEDKDDFDDTLVAIDTYNCDLHFKVA 121

Query: 746  RDRSSGYPLTIEGFAYLWSGARASYGVRRGRVCFEMKINEEISVKHLPSTEPDPHVVRIG 925
            RD SSGY L IEGFA+LWSGARASY VRRGRVC                  PDPHVVRIG
Sbjct: 122  RDGSSGYRLMIEGFAHLWSGARASYRVRRGRVC------------------PDPHVVRIG 163

Query: 926  WSLDSCSTQLGEEPFSYGYGGTGKKSTNSRFENYGDKFAENDVIGCFV 1069
            WSLDSCSTQLGEEPFSYGYGG+GKKSTN RFENYGDKFAENDVIGCF+
Sbjct: 164  WSLDSCSTQLGEEPFSYGYGGSGKKSTNGRFENYGDKFAENDVIGCFI 211


>ref|XP_001787980.1| PREDICTED: heterogeneous nuclear ribonucleoprotein U-like 1-like [Bos
            taurus].
          Length = 232

 Score =  356 bits (913), Expect = 6e-98
 Identities = 179/228 (78%), Positives = 187/228 (82%)
 Frame = +2

Query: 386  QNQFYETPVIKQENESGYERRPLEMEQQQQAYRPEVKTEMKQEAPTSFLPPEASQLKPDR 565
            QNQFYET VIKQE ESGY+R+ LEM+QQQQAY PEVKTEMKQEAPTSFLPPEASQ KPDR
Sbjct: 2    QNQFYETQVIKQEKESGYKRKLLEMDQQQQAYCPEVKTEMKQEAPTSFLPPEASQHKPDR 61

Query: 566  QQFQSRKRPYEENRGRGYFEHREERRGRSPQPPAXXXXXXXXXTLVAIDTYNCDLHFKVA 745
            QQFQS KR YEEN+GRGYFEHRE+RRGRS QP A         TLVAIDTYNCDLHFKVA
Sbjct: 62   QQFQSCKRLYEENQGRGYFEHREDRRGRSLQPLAEEDKDDFDDTLVAIDTYNCDLHFKVA 121

Query: 746  RDRSSGYPLTIEGFAYLWSGARASYGVRRGRVCFEMKINEEISVKHLPSTEPDPHVVRIG 925
            RD SSGY L IEGFA+LWSGARASY VRRGRVC                  PDPHVVRIG
Sbjct: 122  RDGSSGYRLMIEGFAHLWSGARASYRVRRGRVC------------------PDPHVVRIG 163

Query: 926  WSLDSCSTQLGEEPFSYGYGGTGKKSTNSRFENYGDKFAENDVIGCFV 1069
            WSLDSCSTQLGEEPFSYGYGG+GKKSTN RFENYGDKFAENDVIGCF+
Sbjct: 164  WSLDSCSTQLGEEPFSYGYGGSGKKSTNGRFENYGDKFAENDVIGCFI 211


>ref|NP_001068936.1| ATP-dependent RNA helicase DDX1 [Bos taurus].
          Length = 740

 Score =  112 bits (280), Expect = 2e-24
 Identities = 59/165 (35%), Positives = 94/165 (56%), Gaps = 6/165 (3%)
 Frame = +2

Query: 749  DRSSGYPLTIEGFAYL------WSGARASYGVRRGRVCFEMKINEEISVKHLPSTEPDPH 910
            DR S + +  +G          W G RA+ G+ +G+  +E+  +             D  
Sbjct: 97   DRGSAFAIGSDGLCCQSREVKEWHGCRATKGLTKGKHYYEVSCH-------------DQG 143

Query: 911  VVRIGWSLDSCSTQLGEEPFSYGYGGTGKKSTNSRFENYGDKFAENDVIGCFVDFECGND 1090
            + R+GWS    S  LG + F +G+GGTGKKS N +F+NYG++F  +D IGC++D + G+ 
Sbjct: 144  LCRVGWSSMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGH- 202

Query: 1091 VELSFTKNGKWMGIAFRIQKEALGGQALYPHVLVKNCAVEFNFGQ 1225
              + F+KNGK +G+AF I    +  QAL+P  ++KN  ++FNFG+
Sbjct: 203  --VKFSKNGKDLGLAFEIPPH-MKNQALFPACVLKNAELKFNFGE 244


>ref|NP_001179993.1| E3 ubiquitin-protein ligase RNF123 [Bos taurus].
          Length = 1313

 Score = 58.2 bits (139), Expect = 3e-08
 Identities = 42/135 (31%), Positives = 64/135 (47%), Gaps = 5/135 (3%)
 Frame = +2

Query: 911  VVRIGWSLDSCSTQ----LGEEPFSYGYGGTGKKSTNSRFENYGDKFAENDVIGCFVDFE 1078
            +++IGW   +C       +G+   SY Y G   +  N    NYG  +A  D++ C +D +
Sbjct: 147  LMQIGWCTINCRFNQEEGVGDTHNSYAYDGNRVRKWNVTTTNYGKAWAAGDIVSCLIDLD 206

Query: 1079 CGNDVELSFTKNGKWMGIAFRIQKEALGGQALYPHV-LVKNCAVEFNFGQRAEPYCSVLP 1255
             G    LSF+ NG  +G AF      L G A +P + L    +V FNFG R  P    + 
Sbjct: 207  EGT---LSFSLNGVSLGTAFENLSRGL-GMAYFPAISLSFKESVAFNFGSR--PLRYPVA 260

Query: 1256 GFTFIQHLPLSERIR 1300
            G+  +Q  P +  +R
Sbjct: 261  GYRPLQDPPSTSLVR 275


>ref|XP_002697083.1| PREDICTED: ring finger protein 123-like [Bos taurus].
          Length = 1313

 Score = 58.2 bits (139), Expect = 3e-08
 Identities = 42/135 (31%), Positives = 64/135 (47%), Gaps = 5/135 (3%)
 Frame = +2

Query: 911  VVRIGWSLDSCSTQ----LGEEPFSYGYGGTGKKSTNSRFENYGDKFAENDVIGCFVDFE 1078
            +++IGW   +C       +G+   SY Y G   +  N    NYG  +A  D++ C +D +
Sbjct: 147  LMQIGWCTINCRFNQEEGVGDTHNSYAYDGNRVRKWNVTTTNYGKAWAAGDIVSCLIDLD 206

Query: 1079 CGNDVELSFTKNGKWMGIAFRIQKEALGGQALYPHV-LVKNCAVEFNFGQRAEPYCSVLP 1255
             G    LSF+ NG  +G AF      L G A +P + L    +V FNFG R  P    + 
Sbjct: 207  EGT---LSFSLNGVSLGTAFENLSRGL-GMAYFPAISLSFKESVAFNFGSR--PLRYPVA 260

Query: 1256 GFTFIQHLPLSERIR 1300
            G+  +Q  P +  +R
Sbjct: 261  GYRPLQDPPSTSLVR 275


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 86,962,134
Number of extensions: 2495818
Number of successful extensions: 10849
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 10707
Number of HSP's successfully gapped: 11
Length of query: 811
Length of database: 17,681,374
Length adjustment: 110
Effective length of query: 701
Effective length of database: 14,041,694
Effective search space: 9843227494
Effective search space used: 9843227494
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002455
         (2435 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_866619.1| PREDICTED: similar to E1B-55kDa-associated prot...   995   0.0  
Alignment   gi|XP_866594.1| PREDICTED: similar to E1B-55kDa-associated prot...   995   0.0  
Alignment   gi|XP_852865.1| PREDICTED: similar to E1B-55kDa-associated prot...   995   0.0  
Alignment   gi|XP_866555.1| PREDICTED: similar to E1B-55kDa-associated prot...   995   0.0  
Alignment   gi|XP_866605.1| PREDICTED: similar to E1B-55kDa-associated prot...   995   0.0  
Alignment   gi|XP_866542.1| PREDICTED: similar to E1B-55kDa-associated prot...   988   0.0  
Alignment   gi|XP_866527.1| PREDICTED: similar to E1B-55kDa-associated prot...   962   0.0  
Alignment   gi|XP_866586.1| PREDICTED: similar to E1B-55kDa-associated prot...   993   0.0  
Alignment   gi|XP_533659.2| PREDICTED: similar to E1B-55kDa-associated prot...   993   0.0  
Alignment   gi|XP_866499.1| PREDICTED: similar to E1B-55kDa-associated prot...   913   0.0  

>ref|XP_866619.1| PREDICTED: similar to E1B-55kDa-associated protein 5 isoform b
            isoform 14 [Canis familiaris].
          Length = 858

 Score =  995 bits (2572), Expect(2) = 0.0
 Identities = 488/502 (97%), Positives = 490/502 (97%)
 Frame = +2

Query: 365  VMDNITRQNQFYETPVIKQENESGYERRPLEMEQQQQAYRPEVKTEMKQEAPTSFLPPEA 544
            VMDNITRQNQFYE+ VIKQENESGYERRPLEMEQQQ AYRPEVKTEMKQEAPTSFLPPEA
Sbjct: 100  VMDNITRQNQFYESQVIKQENESGYERRPLEMEQQQ-AYRPEVKTEMKQEAPTSFLPPEA 158

Query: 545  SQLKPDRQQFQSRKRPYEENRGRGYFEHREERRGRSPQPPAXXXXXXXXXTLVAIDTYNC 724
            SQLKPDRQQFQSRKRPYEENRGRGYFEHRE+RRGRSPQPPA         TLVAIDTYNC
Sbjct: 159  SQLKPDRQQFQSRKRPYEENRGRGYFEHREDRRGRSPQPPAEEDEDDFDDTLVAIDTYNC 218

Query: 725  DLHFKVARDRSSGYPLTIEGFAYLWSGARASYGVRRGRVCFEMKINEEISVKHLPSTEPD 904
            DLHFKVARDRSSGYPLTIEGFAYLWSGARASYGVRRGRVCFEMKINEEISVKHLPSTEPD
Sbjct: 219  DLHFKVARDRSSGYPLTIEGFAYLWSGARASYGVRRGRVCFEMKINEEISVKHLPSTEPD 278

Query: 905  PHVVRIGWSLDSCSTQLGEEPFSYGYGGTGKKSTNSRFENYGDKFAENDVIGCFVDFECG 1084
            PHVVRIGWSLDSCSTQLGEEPFSYGYGGTGKKSTNSRFENYGDKFAENDVIGCF DFECG
Sbjct: 279  PHVVRIGWSLDSCSTQLGEEPFSYGYGGTGKKSTNSRFENYGDKFAENDVIGCFADFECG 338

Query: 1085 NDVELSFTKNGKWMGIAFRIQKEALGGQALYPHVLVKNCAVEFNFGQRAEPYCSVLPGFT 1264
            NDVELSFTKNGKWMGIAFRIQKEALGGQALYPHVLVKNCAVEFNFGQRAEPYCSVLPGFT
Sbjct: 339  NDVELSFTKNGKWMGIAFRIQKEALGGQALYPHVLVKNCAVEFNFGQRAEPYCSVLPGFT 398

Query: 1265 FIQHLPLSERIRGTVGPKSKAECEILMMVGLPAAGKTTWAIKHAASNPSKKYNILGTNAI 1444
            FIQHLPLSERIRGTVGPKSKAECEILMMVGLPAAGKTTWAIKHAASNPSKKYNILGTNAI
Sbjct: 399  FIQHLPLSERIRGTVGPKSKAECEILMMVGLPAAGKTTWAIKHAASNPSKKYNILGTNAI 458

Query: 1445 MDKMRVMGLRRQRNYAGRWDVLIQQATQCLNRLIQIAARKKRNYILDQTNVYGSAQRRKM 1624
            MDKMRVMGLRRQRNYAGRWDVLIQQATQCLNRLIQIAARKKRNYILDQTNVYGSAQRRKM
Sbjct: 459  MDKMRVMGLRRQRNYAGRWDVLIQQATQCLNRLIQIAARKKRNYILDQTNVYGSAQRRKM 518

Query: 1625 RPFEGFQRKAIVICPTDEDLKDRTIKRTDEEGKDVPDHAVLEMKANFTLPDVGDFLDEVL 1804
            RPFEGFQRKAIVICPTDEDLKDRTIKRTDEEGKDVPDHAVLEMKANFTLPDVGDFLDEVL
Sbjct: 519  RPFEGFQRKAIVICPTDEDLKDRTIKRTDEEGKDVPDHAVLEMKANFTLPDVGDFLDEVL 578

Query: 1805 FIELQREEADKLVRQYNEEGRK 1870
            FIELQREEADKLVRQYNEEGRK
Sbjct: 579  FIELQREEADKLVRQYNEEGRK 600



 Score = 58.2 bits (139), Expect(2) = 0.0
 Identities = 32/64 (50%), Positives = 34/64 (53%)
 Frame = +3

Query: 174 MDVRRLKVNELREELQRRGLDTRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRPGHN 353
           MDVRRLKVNELREELQRRGLDTRG                              GRPGHN
Sbjct: 1   MDVRRLKVNELREELQRRGLDTRGLKAELAERLQAALEAEEPDDERELEADDEPGRPGHN 60

Query: 354 SEEM 365
           +EE+
Sbjct: 61  NEEV 64



 Score = 66.6 bits (161), Expect = 1e-10
 Identities = 34/57 (59%), Positives = 34/57 (59%)
 Frame = +3

Query: 1920 SYSPARNPPGASSYNKNSNIPGSSANXXXXXXXXXXXXXXXXXXXXXXXGGYSQGYT 2090
            SYSPARNPPGASSYNKNSNIPGSSAN                       GGYSQGYT
Sbjct: 716  SYSPARNPPGASSYNKNSNIPGSSANTSTPTVSSYSPPQPSYSQPPYNQGGYSQGYT 772


>ref|XP_866594.1| PREDICTED: similar to E1B-55kDa-associated protein 5 isoform b
            isoform 12 [Canis familiaris].
          Length = 856

 Score =  995 bits (2572), Expect(2) = 0.0
 Identities = 488/502 (97%), Positives = 490/502 (97%)
 Frame = +2

Query: 365  VMDNITRQNQFYETPVIKQENESGYERRPLEMEQQQQAYRPEVKTEMKQEAPTSFLPPEA 544
            VMDNITRQNQFYE+ VIKQENESGYERRPLEMEQQQ AYRPEVKTEMKQEAPTSFLPPEA
Sbjct: 100  VMDNITRQNQFYESQVIKQENESGYERRPLEMEQQQ-AYRPEVKTEMKQEAPTSFLPPEA 158

Query: 545  SQLKPDRQQFQSRKRPYEENRGRGYFEHREERRGRSPQPPAXXXXXXXXXTLVAIDTYNC 724
            SQLKPDRQQFQSRKRPYEENRGRGYFEHRE+RRGRSPQPPA         TLVAIDTYNC
Sbjct: 159  SQLKPDRQQFQSRKRPYEENRGRGYFEHREDRRGRSPQPPAEEDEDDFDDTLVAIDTYNC 218

Query: 725  DLHFKVARDRSSGYPLTIEGFAYLWSGARASYGVRRGRVCFEMKINEEISVKHLPSTEPD 904
            DLHFKVARDRSSGYPLTIEGFAYLWSGARASYGVRRGRVCFEMKINEEISVKHLPSTEPD
Sbjct: 219  DLHFKVARDRSSGYPLTIEGFAYLWSGARASYGVRRGRVCFEMKINEEISVKHLPSTEPD 278

Query: 905  PHVVRIGWSLDSCSTQLGEEPFSYGYGGTGKKSTNSRFENYGDKFAENDVIGCFVDFECG 1084
            PHVVRIGWSLDSCSTQLGEEPFSYGYGGTGKKSTNSRFENYGDKFAENDVIGCF DFECG
Sbjct: 279  PHVVRIGWSLDSCSTQLGEEPFSYGYGGTGKKSTNSRFENYGDKFAENDVIGCFADFECG 338

Query: 1085 NDVELSFTKNGKWMGIAFRIQKEALGGQALYPHVLVKNCAVEFNFGQRAEPYCSVLPGFT 1264
            NDVELSFTKNGKWMGIAFRIQKEALGGQALYPHVLVKNCAVEFNFGQRAEPYCSVLPGFT
Sbjct: 339  NDVELSFTKNGKWMGIAFRIQKEALGGQALYPHVLVKNCAVEFNFGQRAEPYCSVLPGFT 398

Query: 1265 FIQHLPLSERIRGTVGPKSKAECEILMMVGLPAAGKTTWAIKHAASNPSKKYNILGTNAI 1444
            FIQHLPLSERIRGTVGPKSKAECEILMMVGLPAAGKTTWAIKHAASNPSKKYNILGTNAI
Sbjct: 399  FIQHLPLSERIRGTVGPKSKAECEILMMVGLPAAGKTTWAIKHAASNPSKKYNILGTNAI 458

Query: 1445 MDKMRVMGLRRQRNYAGRWDVLIQQATQCLNRLIQIAARKKRNYILDQTNVYGSAQRRKM 1624
            MDKMRVMGLRRQRNYAGRWDVLIQQATQCLNRLIQIAARKKRNYILDQTNVYGSAQRRKM
Sbjct: 459  MDKMRVMGLRRQRNYAGRWDVLIQQATQCLNRLIQIAARKKRNYILDQTNVYGSAQRRKM 518

Query: 1625 RPFEGFQRKAIVICPTDEDLKDRTIKRTDEEGKDVPDHAVLEMKANFTLPDVGDFLDEVL 1804
            RPFEGFQRKAIVICPTDEDLKDRTIKRTDEEGKDVPDHAVLEMKANFTLPDVGDFLDEVL
Sbjct: 519  RPFEGFQRKAIVICPTDEDLKDRTIKRTDEEGKDVPDHAVLEMKANFTLPDVGDFLDEVL 578

Query: 1805 FIELQREEADKLVRQYNEEGRK 1870
            FIELQREEADKLVRQYNEEGRK
Sbjct: 579  FIELQREEADKLVRQYNEEGRK 600



 Score = 58.2 bits (139), Expect(2) = 0.0
 Identities = 32/64 (50%), Positives = 34/64 (53%)
 Frame = +3

Query: 174 MDVRRLKVNELREELQRRGLDTRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRPGHN 353
           MDVRRLKVNELREELQRRGLDTRG                              GRPGHN
Sbjct: 1   MDVRRLKVNELREELQRRGLDTRGLKAELAERLQAALEAEEPDDERELEADDEPGRPGHN 60

Query: 354 SEEM 365
           +EE+
Sbjct: 61  NEEV 64



 Score = 66.6 bits (161), Expect = 1e-10
 Identities = 34/57 (59%), Positives = 34/57 (59%)
 Frame = +3

Query: 1920 SYSPARNPPGASSYNKNSNIPGSSANXXXXXXXXXXXXXXXXXXXXXXXGGYSQGYT 2090
            SYSPARNPPGASSYNKNSNIPGSSAN                       GGYSQGYT
Sbjct: 716  SYSPARNPPGASSYNKNSNIPGSSANTSTPTVSSYSPPQPSYSQPPYNQGGYSQGYT 772


>ref|XP_852865.1| PREDICTED: similar to E1B-55kDa-associated protein 5 isoform b
            isoform 2 [Canis familiaris].
          Length = 856

 Score =  995 bits (2572), Expect(2) = 0.0
 Identities = 488/502 (97%), Positives = 490/502 (97%)
 Frame = +2

Query: 365  VMDNITRQNQFYETPVIKQENESGYERRPLEMEQQQQAYRPEVKTEMKQEAPTSFLPPEA 544
            VMDNITRQNQFYE+ VIKQENESGYERRPLEMEQQQ AYRPEVKTEMKQEAPTSFLPPEA
Sbjct: 100  VMDNITRQNQFYESQVIKQENESGYERRPLEMEQQQ-AYRPEVKTEMKQEAPTSFLPPEA 158

Query: 545  SQLKPDRQQFQSRKRPYEENRGRGYFEHREERRGRSPQPPAXXXXXXXXXTLVAIDTYNC 724
            SQLKPDRQQFQSRKRPYEENRGRGYFEHRE+RRGRSPQPPA         TLVAIDTYNC
Sbjct: 159  SQLKPDRQQFQSRKRPYEENRGRGYFEHREDRRGRSPQPPAEEDEDDFDDTLVAIDTYNC 218

Query: 725  DLHFKVARDRSSGYPLTIEGFAYLWSGARASYGVRRGRVCFEMKINEEISVKHLPSTEPD 904
            DLHFKVARDRSSGYPLTIEGFAYLWSGARASYGVRRGRVCFEMKINEEISVKHLPSTEPD
Sbjct: 219  DLHFKVARDRSSGYPLTIEGFAYLWSGARASYGVRRGRVCFEMKINEEISVKHLPSTEPD 278

Query: 905  PHVVRIGWSLDSCSTQLGEEPFSYGYGGTGKKSTNSRFENYGDKFAENDVIGCFVDFECG 1084
            PHVVRIGWSLDSCSTQLGEEPFSYGYGGTGKKSTNSRFENYGDKFAENDVIGCF DFECG
Sbjct: 279  PHVVRIGWSLDSCSTQLGEEPFSYGYGGTGKKSTNSRFENYGDKFAENDVIGCFADFECG 338

Query: 1085 NDVELSFTKNGKWMGIAFRIQKEALGGQALYPHVLVKNCAVEFNFGQRAEPYCSVLPGFT 1264
            NDVELSFTKNGKWMGIAFRIQKEALGGQALYPHVLVKNCAVEFNFGQRAEPYCSVLPGFT
Sbjct: 339  NDVELSFTKNGKWMGIAFRIQKEALGGQALYPHVLVKNCAVEFNFGQRAEPYCSVLPGFT 398

Query: 1265 FIQHLPLSERIRGTVGPKSKAECEILMMVGLPAAGKTTWAIKHAASNPSKKYNILGTNAI 1444
            FIQHLPLSERIRGTVGPKSKAECEILMMVGLPAAGKTTWAIKHAASNPSKKYNILGTNAI
Sbjct: 399  FIQHLPLSERIRGTVGPKSKAECEILMMVGLPAAGKTTWAIKHAASNPSKKYNILGTNAI 458

Query: 1445 MDKMRVMGLRRQRNYAGRWDVLIQQATQCLNRLIQIAARKKRNYILDQTNVYGSAQRRKM 1624
            MDKMRVMGLRRQRNYAGRWDVLIQQATQCLNRLIQIAARKKRNYILDQTNVYGSAQRRKM
Sbjct: 459  MDKMRVMGLRRQRNYAGRWDVLIQQATQCLNRLIQIAARKKRNYILDQTNVYGSAQRRKM 518

Query: 1625 RPFEGFQRKAIVICPTDEDLKDRTIKRTDEEGKDVPDHAVLEMKANFTLPDVGDFLDEVL 1804
            RPFEGFQRKAIVICPTDEDLKDRTIKRTDEEGKDVPDHAVLEMKANFTLPDVGDFLDEVL
Sbjct: 519  RPFEGFQRKAIVICPTDEDLKDRTIKRTDEEGKDVPDHAVLEMKANFTLPDVGDFLDEVL 578

Query: 1805 FIELQREEADKLVRQYNEEGRK 1870
            FIELQREEADKLVRQYNEEGRK
Sbjct: 579  FIELQREEADKLVRQYNEEGRK 600



 Score = 58.2 bits (139), Expect(2) = 0.0
 Identities = 32/64 (50%), Positives = 34/64 (53%)
 Frame = +3

Query: 174 MDVRRLKVNELREELQRRGLDTRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRPGHN 353
           MDVRRLKVNELREELQRRGLDTRG                              GRPGHN
Sbjct: 1   MDVRRLKVNELREELQRRGLDTRGLKAELAERLQAALEAEEPDDERELEADDEPGRPGHN 60

Query: 354 SEEM 365
           +EE+
Sbjct: 61  NEEV 64



 Score = 66.6 bits (161), Expect = 1e-10
 Identities = 34/57 (59%), Positives = 34/57 (59%)
 Frame = +3

Query: 1920 SYSPARNPPGASSYNKNSNIPGSSANXXXXXXXXXXXXXXXXXXXXXXXGGYSQGYT 2090
            SYSPARNPPGASSYNKNSNIPGSSAN                       GGYSQGYT
Sbjct: 716  SYSPARNPPGASSYNKNSNIPGSSANTSTPTVSSYSPPQPSYSQPPYNQGGYSQGYT 772


>ref|XP_866555.1| PREDICTED: similar to E1B-55kDa-associated protein 5 isoform b
            isoform 10 [Canis familiaris].
          Length = 822

 Score =  995 bits (2572), Expect(2) = 0.0
 Identities = 488/502 (97%), Positives = 490/502 (97%)
 Frame = +2

Query: 365  VMDNITRQNQFYETPVIKQENESGYERRPLEMEQQQQAYRPEVKTEMKQEAPTSFLPPEA 544
            VMDNITRQNQFYE+ VIKQENESGYERRPLEMEQQQ AYRPEVKTEMKQEAPTSFLPPEA
Sbjct: 100  VMDNITRQNQFYESQVIKQENESGYERRPLEMEQQQ-AYRPEVKTEMKQEAPTSFLPPEA 158

Query: 545  SQLKPDRQQFQSRKRPYEENRGRGYFEHREERRGRSPQPPAXXXXXXXXXTLVAIDTYNC 724
            SQLKPDRQQFQSRKRPYEENRGRGYFEHRE+RRGRSPQPPA         TLVAIDTYNC
Sbjct: 159  SQLKPDRQQFQSRKRPYEENRGRGYFEHREDRRGRSPQPPAEEDEDDFDDTLVAIDTYNC 218

Query: 725  DLHFKVARDRSSGYPLTIEGFAYLWSGARASYGVRRGRVCFEMKINEEISVKHLPSTEPD 904
            DLHFKVARDRSSGYPLTIEGFAYLWSGARASYGVRRGRVCFEMKINEEISVKHLPSTEPD
Sbjct: 219  DLHFKVARDRSSGYPLTIEGFAYLWSGARASYGVRRGRVCFEMKINEEISVKHLPSTEPD 278

Query: 905  PHVVRIGWSLDSCSTQLGEEPFSYGYGGTGKKSTNSRFENYGDKFAENDVIGCFVDFECG 1084
            PHVVRIGWSLDSCSTQLGEEPFSYGYGGTGKKSTNSRFENYGDKFAENDVIGCF DFECG
Sbjct: 279  PHVVRIGWSLDSCSTQLGEEPFSYGYGGTGKKSTNSRFENYGDKFAENDVIGCFADFECG 338

Query: 1085 NDVELSFTKNGKWMGIAFRIQKEALGGQALYPHVLVKNCAVEFNFGQRAEPYCSVLPGFT 1264
            NDVELSFTKNGKWMGIAFRIQKEALGGQALYPHVLVKNCAVEFNFGQRAEPYCSVLPGFT
Sbjct: 339  NDVELSFTKNGKWMGIAFRIQKEALGGQALYPHVLVKNCAVEFNFGQRAEPYCSVLPGFT 398

Query: 1265 FIQHLPLSERIRGTVGPKSKAECEILMMVGLPAAGKTTWAIKHAASNPSKKYNILGTNAI 1444
            FIQHLPLSERIRGTVGPKSKAECEILMMVGLPAAGKTTWAIKHAASNPSKKYNILGTNAI
Sbjct: 399  FIQHLPLSERIRGTVGPKSKAECEILMMVGLPAAGKTTWAIKHAASNPSKKYNILGTNAI 458

Query: 1445 MDKMRVMGLRRQRNYAGRWDVLIQQATQCLNRLIQIAARKKRNYILDQTNVYGSAQRRKM 1624
            MDKMRVMGLRRQRNYAGRWDVLIQQATQCLNRLIQIAARKKRNYILDQTNVYGSAQRRKM
Sbjct: 459  MDKMRVMGLRRQRNYAGRWDVLIQQATQCLNRLIQIAARKKRNYILDQTNVYGSAQRRKM 518

Query: 1625 RPFEGFQRKAIVICPTDEDLKDRTIKRTDEEGKDVPDHAVLEMKANFTLPDVGDFLDEVL 1804
            RPFEGFQRKAIVICPTDEDLKDRTIKRTDEEGKDVPDHAVLEMKANFTLPDVGDFLDEVL
Sbjct: 519  RPFEGFQRKAIVICPTDEDLKDRTIKRTDEEGKDVPDHAVLEMKANFTLPDVGDFLDEVL 578

Query: 1805 FIELQREEADKLVRQYNEEGRK 1870
            FIELQREEADKLVRQYNEEGRK
Sbjct: 579  FIELQREEADKLVRQYNEEGRK 600



 Score = 58.2 bits (139), Expect(2) = 0.0
 Identities = 32/64 (50%), Positives = 34/64 (53%)
 Frame = +3

Query: 174 MDVRRLKVNELREELQRRGLDTRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRPGHN 353
           MDVRRLKVNELREELQRRGLDTRG                              GRPGHN
Sbjct: 1   MDVRRLKVNELREELQRRGLDTRGLKAELAERLQAALEAEEPDDERELEADDEPGRPGHN 60

Query: 354 SEEM 365
           +EE+
Sbjct: 61  NEEV 64



 Score =  102 bits (255), Expect(2) = 1e-32
 Identities = 53/73 (72%), Positives = 55/73 (75%), Gaps = 1/73 (1%)
 Frame = +2

Query: 1997 YQHPYSQQLQPS-TAELQPATLQPRRLQPGLHSPSASTSTTTCLQLWELRRLQPSPIHPT 2173
            Y  P S    P   AELQPATLQP RLQPGLHS + STSTTTCLQLWEL RLQP  +HPT
Sbjct: 750  YSPPQSPGFPPYFPAELQPATLQPGRLQPGLHSSTTSTSTTTCLQLWELWRLQPGSLHPT 809

Query: 2174 TAPHRTDLPSAQL 2212
            TA H TDLPSAQL
Sbjct: 810  TASHCTDLPSAQL 822



 Score = 57.8 bits (138), Expect(2) = 1e-32
 Identities = 26/26 (100%), Positives = 26/26 (100%)
 Frame = +3

Query: 1920 SYSPARNPPGASSYNKNSNIPGSSAN 1997
            SYSPARNPPGASSYNKNSNIPGSSAN
Sbjct: 716  SYSPARNPPGASSYNKNSNIPGSSAN 741


>ref|XP_866605.1| PREDICTED: similar to E1B-55kDa-associated protein 5 isoform b
            isoform 13 [Canis familiaris].
          Length = 804

 Score =  995 bits (2572), Expect(2) = 0.0
 Identities = 488/502 (97%), Positives = 490/502 (97%)
 Frame = +2

Query: 365  VMDNITRQNQFYETPVIKQENESGYERRPLEMEQQQQAYRPEVKTEMKQEAPTSFLPPEA 544
            VMDNITRQNQFYE+ VIKQENESGYERRPLEMEQQQ AYRPEVKTEMKQEAPTSFLPPEA
Sbjct: 100  VMDNITRQNQFYESQVIKQENESGYERRPLEMEQQQ-AYRPEVKTEMKQEAPTSFLPPEA 158

Query: 545  SQLKPDRQQFQSRKRPYEENRGRGYFEHREERRGRSPQPPAXXXXXXXXXTLVAIDTYNC 724
            SQLKPDRQQFQSRKRPYEENRGRGYFEHRE+RRGRSPQPPA         TLVAIDTYNC
Sbjct: 159  SQLKPDRQQFQSRKRPYEENRGRGYFEHREDRRGRSPQPPAEEDEDDFDDTLVAIDTYNC 218

Query: 725  DLHFKVARDRSSGYPLTIEGFAYLWSGARASYGVRRGRVCFEMKINEEISVKHLPSTEPD 904
            DLHFKVARDRSSGYPLTIEGFAYLWSGARASYGVRRGRVCFEMKINEEISVKHLPSTEPD
Sbjct: 219  DLHFKVARDRSSGYPLTIEGFAYLWSGARASYGVRRGRVCFEMKINEEISVKHLPSTEPD 278

Query: 905  PHVVRIGWSLDSCSTQLGEEPFSYGYGGTGKKSTNSRFENYGDKFAENDVIGCFVDFECG 1084
            PHVVRIGWSLDSCSTQLGEEPFSYGYGGTGKKSTNSRFENYGDKFAENDVIGCF DFECG
Sbjct: 279  PHVVRIGWSLDSCSTQLGEEPFSYGYGGTGKKSTNSRFENYGDKFAENDVIGCFADFECG 338

Query: 1085 NDVELSFTKNGKWMGIAFRIQKEALGGQALYPHVLVKNCAVEFNFGQRAEPYCSVLPGFT 1264
            NDVELSFTKNGKWMGIAFRIQKEALGGQALYPHVLVKNCAVEFNFGQRAEPYCSVLPGFT
Sbjct: 339  NDVELSFTKNGKWMGIAFRIQKEALGGQALYPHVLVKNCAVEFNFGQRAEPYCSVLPGFT 398

Query: 1265 FIQHLPLSERIRGTVGPKSKAECEILMMVGLPAAGKTTWAIKHAASNPSKKYNILGTNAI 1444
            FIQHLPLSERIRGTVGPKSKAECEILMMVGLPAAGKTTWAIKHAASNPSKKYNILGTNAI
Sbjct: 399  FIQHLPLSERIRGTVGPKSKAECEILMMVGLPAAGKTTWAIKHAASNPSKKYNILGTNAI 458

Query: 1445 MDKMRVMGLRRQRNYAGRWDVLIQQATQCLNRLIQIAARKKRNYILDQTNVYGSAQRRKM 1624
            MDKMRVMGLRRQRNYAGRWDVLIQQATQCLNRLIQIAARKKRNYILDQTNVYGSAQRRKM
Sbjct: 459  MDKMRVMGLRRQRNYAGRWDVLIQQATQCLNRLIQIAARKKRNYILDQTNVYGSAQRRKM 518

Query: 1625 RPFEGFQRKAIVICPTDEDLKDRTIKRTDEEGKDVPDHAVLEMKANFTLPDVGDFLDEVL 1804
            RPFEGFQRKAIVICPTDEDLKDRTIKRTDEEGKDVPDHAVLEMKANFTLPDVGDFLDEVL
Sbjct: 519  RPFEGFQRKAIVICPTDEDLKDRTIKRTDEEGKDVPDHAVLEMKANFTLPDVGDFLDEVL 578

Query: 1805 FIELQREEADKLVRQYNEEGRK 1870
            FIELQREEADKLVRQYNEEGRK
Sbjct: 579  FIELQREEADKLVRQYNEEGRK 600



 Score = 58.2 bits (139), Expect(2) = 0.0
 Identities = 32/64 (50%), Positives = 34/64 (53%)
 Frame = +3

Query: 174 MDVRRLKVNELREELQRRGLDTRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRPGHN 353
           MDVRRLKVNELREELQRRGLDTRG                              GRPGHN
Sbjct: 1   MDVRRLKVNELREELQRRGLDTRGLKAELAERLQAALEAEEPDDERELEADDEPGRPGHN 60

Query: 354 SEEM 365
           +EE+
Sbjct: 61  NEEV 64



 Score = 57.8 bits (138), Expect = 5e-08
 Identities = 26/26 (100%), Positives = 26/26 (100%)
 Frame = +3

Query: 1920 SYSPARNPPGASSYNKNSNIPGSSAN 1997
            SYSPARNPPGASSYNKNSNIPGSSAN
Sbjct: 716  SYSPARNPPGASSYNKNSNIPGSSAN 741


>ref|XP_866542.1| PREDICTED: similar to E1B-55kDa-associated protein 5 isoform b
            isoform 9 [Canis familiaris].
          Length = 859

 Score =  988 bits (2554), Expect(2) = 0.0
 Identities = 487/505 (96%), Positives = 490/505 (97%), Gaps = 3/505 (0%)
 Frame = +2

Query: 365  VMDNITRQNQFYETPVIKQENESGYERRPLEMEQQQQAYRPEVKTEMKQEAPTSFLPPEA 544
            VMDNITRQNQFYE+ VIKQENESGYERRPLEMEQQQ AYRPEVKTEMKQEAPTSFLPPEA
Sbjct: 100  VMDNITRQNQFYESQVIKQENESGYERRPLEMEQQQ-AYRPEVKTEMKQEAPTSFLPPEA 158

Query: 545  SQLKPDRQQFQSRKRPYEENRGRGYFEHREER---RGRSPQPPAXXXXXXXXXTLVAIDT 715
            SQLKPDRQQFQSRKRPYEENRGRGYFEHRE+R   +GRSPQPPA         TLVAIDT
Sbjct: 159  SQLKPDRQQFQSRKRPYEENRGRGYFEHREDRSFSQGRSPQPPAEEDEDDFDDTLVAIDT 218

Query: 716  YNCDLHFKVARDRSSGYPLTIEGFAYLWSGARASYGVRRGRVCFEMKINEEISVKHLPST 895
            YNCDLHFKVARDRSSGYPLTIEGFAYLWSGARASYGVRRGRVCFEMKINEEISVKHLPST
Sbjct: 219  YNCDLHFKVARDRSSGYPLTIEGFAYLWSGARASYGVRRGRVCFEMKINEEISVKHLPST 278

Query: 896  EPDPHVVRIGWSLDSCSTQLGEEPFSYGYGGTGKKSTNSRFENYGDKFAENDVIGCFVDF 1075
            EPDPHVVRIGWSLDSCSTQLGEEPFSYGYGGTGKKSTNSRFENYGDKFAENDVIGCF DF
Sbjct: 279  EPDPHVVRIGWSLDSCSTQLGEEPFSYGYGGTGKKSTNSRFENYGDKFAENDVIGCFADF 338

Query: 1076 ECGNDVELSFTKNGKWMGIAFRIQKEALGGQALYPHVLVKNCAVEFNFGQRAEPYCSVLP 1255
            ECGNDVELSFTKNGKWMGIAFRIQKEALGGQALYPHVLVKNCAVEFNFGQRAEPYCSVLP
Sbjct: 339  ECGNDVELSFTKNGKWMGIAFRIQKEALGGQALYPHVLVKNCAVEFNFGQRAEPYCSVLP 398

Query: 1256 GFTFIQHLPLSERIRGTVGPKSKAECEILMMVGLPAAGKTTWAIKHAASNPSKKYNILGT 1435
            GFTFIQHLPLSERIRGTVGPKSKAECEILMMVGLPAAGKTTWAIKHAASNPSKKYNILGT
Sbjct: 399  GFTFIQHLPLSERIRGTVGPKSKAECEILMMVGLPAAGKTTWAIKHAASNPSKKYNILGT 458

Query: 1436 NAIMDKMRVMGLRRQRNYAGRWDVLIQQATQCLNRLIQIAARKKRNYILDQTNVYGSAQR 1615
            NAIMDKMRVMGLRRQRNYAGRWDVLIQQATQCLNRLIQIAARKKRNYILDQTNVYGSAQR
Sbjct: 459  NAIMDKMRVMGLRRQRNYAGRWDVLIQQATQCLNRLIQIAARKKRNYILDQTNVYGSAQR 518

Query: 1616 RKMRPFEGFQRKAIVICPTDEDLKDRTIKRTDEEGKDVPDHAVLEMKANFTLPDVGDFLD 1795
            RKMRPFEGFQRKAIVICPTDEDLKDRTIKRTDEEGKDVPDHAVLEMKANFTLPDVGDFLD
Sbjct: 519  RKMRPFEGFQRKAIVICPTDEDLKDRTIKRTDEEGKDVPDHAVLEMKANFTLPDVGDFLD 578

Query: 1796 EVLFIELQREEADKLVRQYNEEGRK 1870
            EVLFIELQREEADKLVRQYNEEGRK
Sbjct: 579  EVLFIELQREEADKLVRQYNEEGRK 603



 Score = 58.2 bits (139), Expect(2) = 0.0
 Identities = 32/64 (50%), Positives = 34/64 (53%)
 Frame = +3

Query: 174 MDVRRLKVNELREELQRRGLDTRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRPGHN 353
           MDVRRLKVNELREELQRRGLDTRG                              GRPGHN
Sbjct: 1   MDVRRLKVNELREELQRRGLDTRGLKAELAERLQAALEAEEPDDERELEADDEPGRPGHN 60

Query: 354 SEEM 365
           +EE+
Sbjct: 61  NEEV 64



 Score = 66.6 bits (161), Expect = 1e-10
 Identities = 34/57 (59%), Positives = 34/57 (59%)
 Frame = +3

Query: 1920 SYSPARNPPGASSYNKNSNIPGSSANXXXXXXXXXXXXXXXXXXXXXXXGGYSQGYT 2090
            SYSPARNPPGASSYNKNSNIPGSSAN                       GGYSQGYT
Sbjct: 719  SYSPARNPPGASSYNKNSNIPGSSANTSTPTVSSYSPPQPSYSQPPYNQGGYSQGYT 775


>ref|XP_866527.1| PREDICTED: similar to E1B-55kDa-associated protein 5 isoform b
            isoform 8 [Canis familiaris].
          Length = 858

 Score =  962 bits (2487), Expect(2) = 0.0
 Identities = 476/504 (94%), Positives = 481/504 (95%), Gaps = 2/504 (0%)
 Frame = +2

Query: 365  VMDNITRQNQFYETPVIKQENESGYERRPLEMEQQQQAYRPEVKTEMKQEAPTSFLPPEA 544
            VMDNITRQNQFYE+ VIKQENESGYERRPLEMEQQQ AYRPEVKTEMKQEAPTSFLPPEA
Sbjct: 100  VMDNITRQNQFYESQVIKQENESGYERRPLEMEQQQ-AYRPEVKTEMKQEAPTSFLPPEA 158

Query: 545  SQLKPDRQQFQSRKRPYEENRGRGYFEHREERRGRSPQPPAXXXXXXXXXTLVAIDTYNC 724
            SQLKPDRQQFQSRKRPYEENRGRGYFEHRE+RRGRSPQPPA         TLVAIDTYNC
Sbjct: 159  SQLKPDRQQFQSRKRPYEENRGRGYFEHREDRRGRSPQPPAEEDEDDFDDTLVAIDTYNC 218

Query: 725  DLHFKVARDRSSGYPLTIEGFAYLWSGARASYGVRRGRVCFEMKINEEISVKHLPSTEPD 904
            DLHFKVARDRSSGYPLTIEGFAYLWSGARASYGVRRGRVCFEMKINEEISVKHLPSTEPD
Sbjct: 219  DLHFKVARDRSSGYPLTIEGFAYLWSGARASYGVRRGRVCFEMKINEEISVKHLPSTEPD 278

Query: 905  PHVVRIGWSLDSCSTQLGEEPFSYGYGGTGKKSTNSRFENYGDKFAENDVIGCFVDFECG 1084
            PHVVRIGWSLDSCSTQLGEEPFSYGYGGTGKKSTNSRFENYGDKFAENDVIGCF DFECG
Sbjct: 279  PHVVRIGWSLDSCSTQLGEEPFSYGYGGTGKKSTNSRFENYGDKFAENDVIGCFADFECG 338

Query: 1085 NDVELSFTKNGKWMGIAFRIQKEALGGQALYPHVLVKNCAVEFNFGQRAEPYCSVLPGFT 1264
            NDVELSFTKNGKWMGIAFRIQKEALGGQALYPHVLVKNCAVEFNFGQRAEPYCSVLPGFT
Sbjct: 339  NDVELSFTKNGKWMGIAFRIQKEALGGQALYPHVLVKNCAVEFNFGQRAEPYCSVLPGFT 398

Query: 1265 FIQHLPLSERIRGTVGPKSKAECEILMMVGLPAAGKTTWAIKHAASNPSKKYNILGTNAI 1444
            FIQHLPLSERIRGTVGPKSKAECEILMMVGLPAAGKTTWAIKHAASNPSKKYNILGTNAI
Sbjct: 399  FIQHLPLSERIRGTVGPKSKAECEILMMVGLPAAGKTTWAIKHAASNPSKKYNILGTNAI 458

Query: 1445 MDKMRVMGLRRQRNYAGRWDVLIQQATQCLNRLIQIAARKKRNYILDQ--TNVYGSAQRR 1618
            MDKMRVMGLRRQRNYAGRWDVLIQQATQCLNRLIQIAARKKRNYILDQ  T  +    + 
Sbjct: 459  MDKMRVMGLRRQRNYAGRWDVLIQQATQCLNRLIQIAARKKRNYILDQVFTGDHHVPGKG 518

Query: 1619 KMRPFEGFQRKAIVICPTDEDLKDRTIKRTDEEGKDVPDHAVLEMKANFTLPDVGDFLDE 1798
            +  PFEGFQRKAIVICPTDEDLKDRTIKRTDEEGKDVPDHAVLEMKANFTLPDVGDFLDE
Sbjct: 519  RGLPFEGFQRKAIVICPTDEDLKDRTIKRTDEEGKDVPDHAVLEMKANFTLPDVGDFLDE 578

Query: 1799 VLFIELQREEADKLVRQYNEEGRK 1870
            VLFIELQREEADKLVRQYNEEGRK
Sbjct: 579  VLFIELQREEADKLVRQYNEEGRK 602



 Score = 58.2 bits (139), Expect(2) = 0.0
 Identities = 32/64 (50%), Positives = 34/64 (53%)
 Frame = +3

Query: 174 MDVRRLKVNELREELQRRGLDTRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRPGHN 353
           MDVRRLKVNELREELQRRGLDTRG                              GRPGHN
Sbjct: 1   MDVRRLKVNELREELQRRGLDTRGLKAELAERLQAALEAEEPDDERELEADDEPGRPGHN 60

Query: 354 SEEM 365
           +EE+
Sbjct: 61  NEEV 64



 Score = 66.6 bits (161), Expect = 1e-10
 Identities = 34/57 (59%), Positives = 34/57 (59%)
 Frame = +3

Query: 1920 SYSPARNPPGASSYNKNSNIPGSSANXXXXXXXXXXXXXXXXXXXXXXXGGYSQGYT 2090
            SYSPARNPPGASSYNKNSNIPGSSAN                       GGYSQGYT
Sbjct: 718  SYSPARNPPGASSYNKNSNIPGSSANTSTPTVSSYSPPQPSYSQPPYNQGGYSQGYT 774


>ref|XP_866586.1| PREDICTED: similar to E1B-55kDa-associated protein 5 isoform d
            isoform 11 [Canis familiaris].
          Length = 756

 Score =  993 bits (2568), Expect = 0.0
 Identities = 487/501 (97%), Positives = 489/501 (97%)
 Frame = +2

Query: 368  MDNITRQNQFYETPVIKQENESGYERRPLEMEQQQQAYRPEVKTEMKQEAPTSFLPPEAS 547
            MDNITRQNQFYE+ VIKQENESGYERRPLEMEQQQ AYRPEVKTEMKQEAPTSFLPPEAS
Sbjct: 1    MDNITRQNQFYESQVIKQENESGYERRPLEMEQQQ-AYRPEVKTEMKQEAPTSFLPPEAS 59

Query: 548  QLKPDRQQFQSRKRPYEENRGRGYFEHREERRGRSPQPPAXXXXXXXXXTLVAIDTYNCD 727
            QLKPDRQQFQSRKRPYEENRGRGYFEHRE+RRGRSPQPPA         TLVAIDTYNCD
Sbjct: 60   QLKPDRQQFQSRKRPYEENRGRGYFEHREDRRGRSPQPPAEEDEDDFDDTLVAIDTYNCD 119

Query: 728  LHFKVARDRSSGYPLTIEGFAYLWSGARASYGVRRGRVCFEMKINEEISVKHLPSTEPDP 907
            LHFKVARDRSSGYPLTIEGFAYLWSGARASYGVRRGRVCFEMKINEEISVKHLPSTEPDP
Sbjct: 120  LHFKVARDRSSGYPLTIEGFAYLWSGARASYGVRRGRVCFEMKINEEISVKHLPSTEPDP 179

Query: 908  HVVRIGWSLDSCSTQLGEEPFSYGYGGTGKKSTNSRFENYGDKFAENDVIGCFVDFECGN 1087
            HVVRIGWSLDSCSTQLGEEPFSYGYGGTGKKSTNSRFENYGDKFAENDVIGCF DFECGN
Sbjct: 180  HVVRIGWSLDSCSTQLGEEPFSYGYGGTGKKSTNSRFENYGDKFAENDVIGCFADFECGN 239

Query: 1088 DVELSFTKNGKWMGIAFRIQKEALGGQALYPHVLVKNCAVEFNFGQRAEPYCSVLPGFTF 1267
            DVELSFTKNGKWMGIAFRIQKEALGGQALYPHVLVKNCAVEFNFGQRAEPYCSVLPGFTF
Sbjct: 240  DVELSFTKNGKWMGIAFRIQKEALGGQALYPHVLVKNCAVEFNFGQRAEPYCSVLPGFTF 299

Query: 1268 IQHLPLSERIRGTVGPKSKAECEILMMVGLPAAGKTTWAIKHAASNPSKKYNILGTNAIM 1447
            IQHLPLSERIRGTVGPKSKAECEILMMVGLPAAGKTTWAIKHAASNPSKKYNILGTNAIM
Sbjct: 300  IQHLPLSERIRGTVGPKSKAECEILMMVGLPAAGKTTWAIKHAASNPSKKYNILGTNAIM 359

Query: 1448 DKMRVMGLRRQRNYAGRWDVLIQQATQCLNRLIQIAARKKRNYILDQTNVYGSAQRRKMR 1627
            DKMRVMGLRRQRNYAGRWDVLIQQATQCLNRLIQIAARKKRNYILDQTNVYGSAQRRKMR
Sbjct: 360  DKMRVMGLRRQRNYAGRWDVLIQQATQCLNRLIQIAARKKRNYILDQTNVYGSAQRRKMR 419

Query: 1628 PFEGFQRKAIVICPTDEDLKDRTIKRTDEEGKDVPDHAVLEMKANFTLPDVGDFLDEVLF 1807
            PFEGFQRKAIVICPTDEDLKDRTIKRTDEEGKDVPDHAVLEMKANFTLPDVGDFLDEVLF
Sbjct: 420  PFEGFQRKAIVICPTDEDLKDRTIKRTDEEGKDVPDHAVLEMKANFTLPDVGDFLDEVLF 479

Query: 1808 IELQREEADKLVRQYNEEGRK 1870
            IELQREEADKLVRQYNEEGRK
Sbjct: 480  IELQREEADKLVRQYNEEGRK 500



 Score = 66.6 bits (161), Expect = 1e-10
 Identities = 34/57 (59%), Positives = 34/57 (59%)
 Frame = +3

Query: 1920 SYSPARNPPGASSYNKNSNIPGSSANXXXXXXXXXXXXXXXXXXXXXXXGGYSQGYT 2090
            SYSPARNPPGASSYNKNSNIPGSSAN                       GGYSQGYT
Sbjct: 616  SYSPARNPPGASSYNKNSNIPGSSANTSTPTVSSYSPPQPSYSQPPYNQGGYSQGYT 672


>ref|XP_533659.2| PREDICTED: similar to E1B-55kDa-associated protein 5 isoform d
            isoform 1 [Canis familiaris].
          Length = 756

 Score =  993 bits (2568), Expect = 0.0
 Identities = 487/501 (97%), Positives = 489/501 (97%)
 Frame = +2

Query: 368  MDNITRQNQFYETPVIKQENESGYERRPLEMEQQQQAYRPEVKTEMKQEAPTSFLPPEAS 547
            MDNITRQNQFYE+ VIKQENESGYERRPLEMEQQQ AYRPEVKTEMKQEAPTSFLPPEAS
Sbjct: 1    MDNITRQNQFYESQVIKQENESGYERRPLEMEQQQ-AYRPEVKTEMKQEAPTSFLPPEAS 59

Query: 548  QLKPDRQQFQSRKRPYEENRGRGYFEHREERRGRSPQPPAXXXXXXXXXTLVAIDTYNCD 727
            QLKPDRQQFQSRKRPYEENRGRGYFEHRE+RRGRSPQPPA         TLVAIDTYNCD
Sbjct: 60   QLKPDRQQFQSRKRPYEENRGRGYFEHREDRRGRSPQPPAEEDEDDFDDTLVAIDTYNCD 119

Query: 728  LHFKVARDRSSGYPLTIEGFAYLWSGARASYGVRRGRVCFEMKINEEISVKHLPSTEPDP 907
            LHFKVARDRSSGYPLTIEGFAYLWSGARASYGVRRGRVCFEMKINEEISVKHLPSTEPDP
Sbjct: 120  LHFKVARDRSSGYPLTIEGFAYLWSGARASYGVRRGRVCFEMKINEEISVKHLPSTEPDP 179

Query: 908  HVVRIGWSLDSCSTQLGEEPFSYGYGGTGKKSTNSRFENYGDKFAENDVIGCFVDFECGN 1087
            HVVRIGWSLDSCSTQLGEEPFSYGYGGTGKKSTNSRFENYGDKFAENDVIGCF DFECGN
Sbjct: 180  HVVRIGWSLDSCSTQLGEEPFSYGYGGTGKKSTNSRFENYGDKFAENDVIGCFADFECGN 239

Query: 1088 DVELSFTKNGKWMGIAFRIQKEALGGQALYPHVLVKNCAVEFNFGQRAEPYCSVLPGFTF 1267
            DVELSFTKNGKWMGIAFRIQKEALGGQALYPHVLVKNCAVEFNFGQRAEPYCSVLPGFTF
Sbjct: 240  DVELSFTKNGKWMGIAFRIQKEALGGQALYPHVLVKNCAVEFNFGQRAEPYCSVLPGFTF 299

Query: 1268 IQHLPLSERIRGTVGPKSKAECEILMMVGLPAAGKTTWAIKHAASNPSKKYNILGTNAIM 1447
            IQHLPLSERIRGTVGPKSKAECEILMMVGLPAAGKTTWAIKHAASNPSKKYNILGTNAIM
Sbjct: 300  IQHLPLSERIRGTVGPKSKAECEILMMVGLPAAGKTTWAIKHAASNPSKKYNILGTNAIM 359

Query: 1448 DKMRVMGLRRQRNYAGRWDVLIQQATQCLNRLIQIAARKKRNYILDQTNVYGSAQRRKMR 1627
            DKMRVMGLRRQRNYAGRWDVLIQQATQCLNRLIQIAARKKRNYILDQTNVYGSAQRRKMR
Sbjct: 360  DKMRVMGLRRQRNYAGRWDVLIQQATQCLNRLIQIAARKKRNYILDQTNVYGSAQRRKMR 419

Query: 1628 PFEGFQRKAIVICPTDEDLKDRTIKRTDEEGKDVPDHAVLEMKANFTLPDVGDFLDEVLF 1807
            PFEGFQRKAIVICPTDEDLKDRTIKRTDEEGKDVPDHAVLEMKANFTLPDVGDFLDEVLF
Sbjct: 420  PFEGFQRKAIVICPTDEDLKDRTIKRTDEEGKDVPDHAVLEMKANFTLPDVGDFLDEVLF 479

Query: 1808 IELQREEADKLVRQYNEEGRK 1870
            IELQREEADKLVRQYNEEGRK
Sbjct: 480  IELQREEADKLVRQYNEEGRK 500



 Score = 66.6 bits (161), Expect = 1e-10
 Identities = 34/57 (59%), Positives = 34/57 (59%)
 Frame = +3

Query: 1920 SYSPARNPPGASSYNKNSNIPGSSANXXXXXXXXXXXXXXXXXXXXXXXGGYSQGYT 2090
            SYSPARNPPGASSYNKNSNIPGSSAN                       GGYSQGYT
Sbjct: 616  SYSPARNPPGASSYNKNSNIPGSSANTSTPTVSSYSPPQPSYSQPPYNQGGYSQGYT 672


>ref|XP_866499.1| PREDICTED: similar to E1B-55kDa-associated protein 5 isoform b
            isoform 6 [Canis familiaris].
          Length = 572

 Score =  913 bits (2360), Expect(2) = 0.0
 Identities = 446/463 (96%), Positives = 450/463 (97%)
 Frame = +2

Query: 365  VMDNITRQNQFYETPVIKQENESGYERRPLEMEQQQQAYRPEVKTEMKQEAPTSFLPPEA 544
            VMDNITRQNQFYE+ VIKQENESGYERRPLEMEQQQ AYRPEVKTEMKQEAPTSFLPPEA
Sbjct: 100  VMDNITRQNQFYESQVIKQENESGYERRPLEMEQQQ-AYRPEVKTEMKQEAPTSFLPPEA 158

Query: 545  SQLKPDRQQFQSRKRPYEENRGRGYFEHREERRGRSPQPPAXXXXXXXXXTLVAIDTYNC 724
            SQLKPDRQQFQSRKRPYEENRGRGYFEHRE+RRGRSPQPPA         TLVAIDTYNC
Sbjct: 159  SQLKPDRQQFQSRKRPYEENRGRGYFEHREDRRGRSPQPPAEEDEDDFDDTLVAIDTYNC 218

Query: 725  DLHFKVARDRSSGYPLTIEGFAYLWSGARASYGVRRGRVCFEMKINEEISVKHLPSTEPD 904
            DLHFKVARDRSSGYPLTIEGFAYLWSGARASYGVRRGRVCFEMKINEEISVKHLPSTEPD
Sbjct: 219  DLHFKVARDRSSGYPLTIEGFAYLWSGARASYGVRRGRVCFEMKINEEISVKHLPSTEPD 278

Query: 905  PHVVRIGWSLDSCSTQLGEEPFSYGYGGTGKKSTNSRFENYGDKFAENDVIGCFVDFECG 1084
            PHVVRIGWSLDSCSTQLGEEPFSYGYGGTGKKSTNSRFENYGDKFAENDVIGCF DFECG
Sbjct: 279  PHVVRIGWSLDSCSTQLGEEPFSYGYGGTGKKSTNSRFENYGDKFAENDVIGCFADFECG 338

Query: 1085 NDVELSFTKNGKWMGIAFRIQKEALGGQALYPHVLVKNCAVEFNFGQRAEPYCSVLPGFT 1264
            NDVELSFTKNGKWMGIAFRIQKEALGGQALYPHVLVKNCAVEFNFGQRAEPYCSVLPGFT
Sbjct: 339  NDVELSFTKNGKWMGIAFRIQKEALGGQALYPHVLVKNCAVEFNFGQRAEPYCSVLPGFT 398

Query: 1265 FIQHLPLSERIRGTVGPKSKAECEILMMVGLPAAGKTTWAIKHAASNPSKKYNILGTNAI 1444
            FIQHLPLSERIRGTVGPKSKAECEILMMVGLPAAGKTTWAIKHAASNPSKKYNILGTNAI
Sbjct: 399  FIQHLPLSERIRGTVGPKSKAECEILMMVGLPAAGKTTWAIKHAASNPSKKYNILGTNAI 458

Query: 1445 MDKMRVMGLRRQRNYAGRWDVLIQQATQCLNRLIQIAARKKRNYILDQTNVYGSAQRRKM 1624
            MDKMRVMGLRRQRNYAGRWDVLIQQATQCLNRLIQIAARKKRNYILDQTNVYGSAQRRKM
Sbjct: 459  MDKMRVMGLRRQRNYAGRWDVLIQQATQCLNRLIQIAARKKRNYILDQTNVYGSAQRRKM 518

Query: 1625 RPFEGFQRKAIVICPTDEDLKDRTIKRTDEEGKDVPDHAVLEM 1753
            RPFEGFQRKAIVICPTDEDLKDRTIKRTDEEGKDVPDHAV ++
Sbjct: 519  RPFEGFQRKAIVICPTDEDLKDRTIKRTDEEGKDVPDHAVSQV 561



 Score = 58.2 bits (139), Expect(2) = 0.0
 Identities = 32/64 (50%), Positives = 34/64 (53%)
 Frame = +3

Query: 174 MDVRRLKVNELREELQRRGLDTRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRPGHN 353
           MDVRRLKVNELREELQRRGLDTRG                              GRPGHN
Sbjct: 1   MDVRRLKVNELREELQRRGLDTRGLKAELAERLQAALEAEEPDDERELEADDEPGRPGHN 60

Query: 354 SEEM 365
           +EE+
Sbjct: 61  NEEV 64


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 90,578,300
Number of extensions: 2533212
Number of successful extensions: 11384
Number of sequences better than 1.0e-05: 23
Number of HSP's gapped: 11202
Number of HSP's successfully gapped: 47
Length of query: 811
Length of database: 18,874,504
Length adjustment: 111
Effective length of query: 700
Effective length of database: 15,174,208
Effective search space: 10621945600
Effective search space used: 10621945600
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002455
         (2435 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_008971.2| heterogeneous nuclear ribonucleoprotein U-like ...   990   0.0  
Alignment   gi|NP_653333.1| heterogeneous nuclear ribonucleoprotein U-like ...   990   0.0  
Alignment   gi|NP_004492.2| heterogeneous nuclear ribonucleoprotein U isofo...   523   e-148
Alignment   gi|NP_114032.2| heterogeneous nuclear ribonucleoprotein U isofo...   520   e-147
Alignment   gi|NP_001073027.1| heterogeneous nuclear ribonucleoprotein U-li...   432   e-121
Alignment   gi|NP_004930.1| ATP-dependent RNA helicase DDX1 [Homo sapiens].      112   1e-24
Alignment   gi|NP_071347.2| E3 ubiquitin-protein ligase RNF123 [Homo sapien...    60   1e-08

>ref|NP_008971.2| heterogeneous nuclear ribonucleoprotein U-like protein 1 isoform a
            [Homo sapiens].
          Length = 856

 Score =  990 bits (2559), Expect(2) = 0.0
 Identities = 485/501 (96%), Positives = 488/501 (97%)
 Frame = +2

Query: 368  MDNITRQNQFYETPVIKQENESGYERRPLEMEQQQQAYRPEVKTEMKQEAPTSFLPPEAS 547
            MDNITRQNQFY+T VIKQENESGYERRPLEMEQQQ AYRPE+KTEMKQ APTSFLPPEAS
Sbjct: 101  MDNITRQNQFYDTQVIKQENESGYERRPLEMEQQQ-AYRPEMKTEMKQGAPTSFLPPEAS 159

Query: 548  QLKPDRQQFQSRKRPYEENRGRGYFEHREERRGRSPQPPAXXXXXXXXXTLVAIDTYNCD 727
            QLKPDRQQFQSRKRPYEENRGRGYFEHRE+RRGRSPQPPA         TLVAIDTYNCD
Sbjct: 160  QLKPDRQQFQSRKRPYEENRGRGYFEHREDRRGRSPQPPAEEDEDDFDDTLVAIDTYNCD 219

Query: 728  LHFKVARDRSSGYPLTIEGFAYLWSGARASYGVRRGRVCFEMKINEEISVKHLPSTEPDP 907
            LHFKVARDRSSGYPLTIEGFAYLWSGARASYGVRRGRVCFEMKINEEISVKHLPSTEPDP
Sbjct: 220  LHFKVARDRSSGYPLTIEGFAYLWSGARASYGVRRGRVCFEMKINEEISVKHLPSTEPDP 279

Query: 908  HVVRIGWSLDSCSTQLGEEPFSYGYGGTGKKSTNSRFENYGDKFAENDVIGCFVDFECGN 1087
            HVVRIGWSLDSCSTQLGEEPFSYGYGGTGKKSTNSRFENYGDKFAENDVIGCF DFECGN
Sbjct: 280  HVVRIGWSLDSCSTQLGEEPFSYGYGGTGKKSTNSRFENYGDKFAENDVIGCFADFECGN 339

Query: 1088 DVELSFTKNGKWMGIAFRIQKEALGGQALYPHVLVKNCAVEFNFGQRAEPYCSVLPGFTF 1267
            DVELSFTKNGKWMGIAFRIQKEALGGQALYPHVLVKNCAVEFNFGQRAEPYCSVLPGFTF
Sbjct: 340  DVELSFTKNGKWMGIAFRIQKEALGGQALYPHVLVKNCAVEFNFGQRAEPYCSVLPGFTF 399

Query: 1268 IQHLPLSERIRGTVGPKSKAECEILMMVGLPAAGKTTWAIKHAASNPSKKYNILGTNAIM 1447
            IQHLPLSERIRGTVGPKSKAECEILMMVGLPAAGKTTWAIKHAASNPSKKYNILGTNAIM
Sbjct: 400  IQHLPLSERIRGTVGPKSKAECEILMMVGLPAAGKTTWAIKHAASNPSKKYNILGTNAIM 459

Query: 1448 DKMRVMGLRRQRNYAGRWDVLIQQATQCLNRLIQIAARKKRNYILDQTNVYGSAQRRKMR 1627
            DKMRVMGLRRQRNYAGRWDVLIQQATQCLNRLIQIAARKKRNYILDQTNVYGSAQRRKMR
Sbjct: 460  DKMRVMGLRRQRNYAGRWDVLIQQATQCLNRLIQIAARKKRNYILDQTNVYGSAQRRKMR 519

Query: 1628 PFEGFQRKAIVICPTDEDLKDRTIKRTDEEGKDVPDHAVLEMKANFTLPDVGDFLDEVLF 1807
            PFEGFQRKAIVICPTDEDLKDRTIKRTDEEGKDVPDHAVLEMKANFTLPDVGDFLDEVLF
Sbjct: 520  PFEGFQRKAIVICPTDEDLKDRTIKRTDEEGKDVPDHAVLEMKANFTLPDVGDFLDEVLF 579

Query: 1808 IELQREEADKLVRQYNEEGRK 1870
            IELQREEADKLVRQYNEEGRK
Sbjct: 580  IELQREEADKLVRQYNEEGRK 600



 Score = 54.7 bits (130), Expect(2) = 0.0
 Identities = 31/64 (48%), Positives = 33/64 (51%)
 Frame = +3

Query: 174 MDVRRLKVNELREELQRRGLDTRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRPGHN 353
           MDVRRLKVNELREELQRRGLDTRG                              GRPGH 
Sbjct: 1   MDVRRLKVNELREELQRRGLDTRGLKAELAERLQAALEAEEPDDERELDADDEPGRPGHI 60

Query: 354 SEEM 365
           +EE+
Sbjct: 61  NEEV 64



 Score = 65.5 bits (158), Expect = 2e-10
 Identities = 33/57 (57%), Positives = 34/57 (59%)
 Frame = +3

Query: 1920 SYSPARNPPGASSYNKNSNIPGSSANXXXXXXXXXXXXXXXXXXXXXXXGGYSQGYT 2090
            SYSPARNPPGAS+YNKNSNIPGSSAN                       GGYSQGYT
Sbjct: 716  SYSPARNPPGASTYNKNSNIPGSSANTSTPTVSSYSPPQPSYSQPPYNQGGYSQGYT 772


>ref|NP_653333.1| heterogeneous nuclear ribonucleoprotein U-like protein 1 isoform d
            [Homo sapiens].
          Length = 756

 Score =  990 bits (2559), Expect = 0.0
 Identities = 485/501 (96%), Positives = 488/501 (97%)
 Frame = +2

Query: 368  MDNITRQNQFYETPVIKQENESGYERRPLEMEQQQQAYRPEVKTEMKQEAPTSFLPPEAS 547
            MDNITRQNQFY+T VIKQENESGYERRPLEMEQQQ AYRPE+KTEMKQ APTSFLPPEAS
Sbjct: 1    MDNITRQNQFYDTQVIKQENESGYERRPLEMEQQQ-AYRPEMKTEMKQGAPTSFLPPEAS 59

Query: 548  QLKPDRQQFQSRKRPYEENRGRGYFEHREERRGRSPQPPAXXXXXXXXXTLVAIDTYNCD 727
            QLKPDRQQFQSRKRPYEENRGRGYFEHRE+RRGRSPQPPA         TLVAIDTYNCD
Sbjct: 60   QLKPDRQQFQSRKRPYEENRGRGYFEHREDRRGRSPQPPAEEDEDDFDDTLVAIDTYNCD 119

Query: 728  LHFKVARDRSSGYPLTIEGFAYLWSGARASYGVRRGRVCFEMKINEEISVKHLPSTEPDP 907
            LHFKVARDRSSGYPLTIEGFAYLWSGARASYGVRRGRVCFEMKINEEISVKHLPSTEPDP
Sbjct: 120  LHFKVARDRSSGYPLTIEGFAYLWSGARASYGVRRGRVCFEMKINEEISVKHLPSTEPDP 179

Query: 908  HVVRIGWSLDSCSTQLGEEPFSYGYGGTGKKSTNSRFENYGDKFAENDVIGCFVDFECGN 1087
            HVVRIGWSLDSCSTQLGEEPFSYGYGGTGKKSTNSRFENYGDKFAENDVIGCF DFECGN
Sbjct: 180  HVVRIGWSLDSCSTQLGEEPFSYGYGGTGKKSTNSRFENYGDKFAENDVIGCFADFECGN 239

Query: 1088 DVELSFTKNGKWMGIAFRIQKEALGGQALYPHVLVKNCAVEFNFGQRAEPYCSVLPGFTF 1267
            DVELSFTKNGKWMGIAFRIQKEALGGQALYPHVLVKNCAVEFNFGQRAEPYCSVLPGFTF
Sbjct: 240  DVELSFTKNGKWMGIAFRIQKEALGGQALYPHVLVKNCAVEFNFGQRAEPYCSVLPGFTF 299

Query: 1268 IQHLPLSERIRGTVGPKSKAECEILMMVGLPAAGKTTWAIKHAASNPSKKYNILGTNAIM 1447
            IQHLPLSERIRGTVGPKSKAECEILMMVGLPAAGKTTWAIKHAASNPSKKYNILGTNAIM
Sbjct: 300  IQHLPLSERIRGTVGPKSKAECEILMMVGLPAAGKTTWAIKHAASNPSKKYNILGTNAIM 359

Query: 1448 DKMRVMGLRRQRNYAGRWDVLIQQATQCLNRLIQIAARKKRNYILDQTNVYGSAQRRKMR 1627
            DKMRVMGLRRQRNYAGRWDVLIQQATQCLNRLIQIAARKKRNYILDQTNVYGSAQRRKMR
Sbjct: 360  DKMRVMGLRRQRNYAGRWDVLIQQATQCLNRLIQIAARKKRNYILDQTNVYGSAQRRKMR 419

Query: 1628 PFEGFQRKAIVICPTDEDLKDRTIKRTDEEGKDVPDHAVLEMKANFTLPDVGDFLDEVLF 1807
            PFEGFQRKAIVICPTDEDLKDRTIKRTDEEGKDVPDHAVLEMKANFTLPDVGDFLDEVLF
Sbjct: 420  PFEGFQRKAIVICPTDEDLKDRTIKRTDEEGKDVPDHAVLEMKANFTLPDVGDFLDEVLF 479

Query: 1808 IELQREEADKLVRQYNEEGRK 1870
            IELQREEADKLVRQYNEEGRK
Sbjct: 480  IELQREEADKLVRQYNEEGRK 500



 Score = 65.5 bits (158), Expect = 2e-10
 Identities = 33/57 (57%), Positives = 34/57 (59%)
 Frame = +3

Query: 1920 SYSPARNPPGASSYNKNSNIPGSSANXXXXXXXXXXXXXXXXXXXXXXXGGYSQGYT 2090
            SYSPARNPPGAS+YNKNSNIPGSSAN                       GGYSQGYT
Sbjct: 616  SYSPARNPPGASTYNKNSNIPGSSANTSTPTVSSYSPPQPSYSQPPYNQGGYSQGYT 672


>ref|NP_004492.2| heterogeneous nuclear ribonucleoprotein U isoform b [Homo sapiens].
          Length = 806

 Score =  523 bits (1346), Expect = e-148
 Identities = 266/493 (53%), Positives = 340/493 (68%), Gaps = 19/493 (3%)
 Frame = +2

Query: 449  PLEMEQQQQAYRPEVKTEM-KQEAPTSFL-----PPEASQLKPD-------RQQFQSRKR 589
            P   +QQ Q  R   K    K   PTS       PP A Q +          Q+   +KR
Sbjct: 166  PATQQQQPQQQRGAAKEAAGKSSGPTSLFAVTVAPPGARQGQQQAGGDGKTEQKGGDKKR 225

Query: 590  PYE---ENRGRGYFEHREER---RGRSPQPPAXXXXXXXXXTLVAIDTYNCDLHFKVARD 751
              +   E+ GRGYFE+ EE    R +SPQPP          T+V +DTYNCDLHFK++RD
Sbjct: 226  GVKRPREDHGRGYFEYIEENKYSRAKSPQPPVEEEDEHFDDTVVCLDTYNCDLHFKISRD 285

Query: 752  RSSGYPLTIEGFAYLWSGARASYGVRRGRVCFEMKINEEISVKHLPSTEPDPHVVRIGWS 931
            R S   LT+E FA+LW+G RASYGV +G+VCFEMK+ E+I V+HL + + D H VRIGWS
Sbjct: 286  RLSASSLTMESFAFLWAGGRASYGVSKGKVCFEMKVTEKIPVRHLYTKDIDIHEVRIGWS 345

Query: 932  LDSCSTQLGEEPFSYGYGGTGKKSTNSRFENYGDKFAENDVIGCFVDFECGNDVELSFTK 1111
            L +    LGEE FSYGY   G K+ N   E+YG+KF ENDVI CF +FE  ++VELS+ K
Sbjct: 346  LTTSGMLLGEEEFSYGYSLKGIKTCNCETEDYGEKFDENDVITCFANFE-SDEVELSYAK 404

Query: 1112 NGKWMGIAFRIQKEALGGQALYPHVLVKNCAVEFNFGQRAEPYCSVLPGFTFIQHLPLSE 1291
            NG+ +G+AF+I KE L G+ L+PHVL  NCAVEFNFGQ+ +PY  +   +TFIQ++PL +
Sbjct: 405  NGQDLGVAFKISKEVLAGRPLFPHVLCHNCAVEFNFGQKEKPYFPIPEEYTFIQNVPLED 464

Query: 1292 RIRGTVGPKSKAECEILMMVGLPAAGKTTWAIKHAASNPSKKYNILGTNAIMDKMRVMGL 1471
            R+RG  GP+ K +CE++MM+GLP AGKTTW  KHAA NP K YNILGTN IMDKM V G 
Sbjct: 465  RVRGPKGPEEKKDCEVVMMIGLPGAGKTTWVTKHAAENPGK-YNILGTNTIMDKMMVAGF 523

Query: 1472 RRQRNYAGRWDVLIQQATQCLNRLIQIAARKKRNYILDQTNVYGSAQRRKMRPFEGFQRK 1651
            ++Q    G+ + L+Q+A QCL + I+IAARKKRN+ILDQTNV  +AQRRKM  F GFQRK
Sbjct: 524  KKQMADTGKLNTLLQRAPQCLGKFIEIAARKKRNFILDQTNVSAAAQRRKMCLFAGFQRK 583

Query: 1652 AIVICPTDEDLKDRTIKRTDEEGKDVPDHAVLEMKANFTLPDVGDFLDEVLFIELQREEA 1831
            A+V+CP DED K RT K+ + EGKD+P+HAVL+MK NFTLP+V +  DE+ ++ELQ+EEA
Sbjct: 584  AVVVCPKDEDYKQRTQKKAEVEGKDLPEHAVLKMKGNFTLPEVAECFDEITYVELQKEEA 643

Query: 1832 DKLVRQYNEEGRK 1870
             KL+ QY EE +K
Sbjct: 644  QKLLEQYKEESKK 656


>ref|NP_114032.2| heterogeneous nuclear ribonucleoprotein U isoform a [Homo sapiens].
          Length = 825

 Score =  520 bits (1340), Expect = e-147
 Identities = 252/432 (58%), Positives = 322/432 (74%), Gaps = 3/432 (0%)
 Frame = +2

Query: 584  KRPYEENRGRGYFEHREER---RGRSPQPPAXXXXXXXXXTLVAIDTYNCDLHFKVARDR 754
            KRP E++ GRGYFE+ EE    R +SPQPP          T+V +DTYNCDLHFK++RDR
Sbjct: 247  KRPREDH-GRGYFEYIEENKYSRAKSPQPPVEEEDEHFDDTVVCLDTYNCDLHFKISRDR 305

Query: 755  SSGYPLTIEGFAYLWSGARASYGVRRGRVCFEMKINEEISVKHLPSTEPDPHVVRIGWSL 934
             S   LT+E FA+LW+G RASYGV +G+VCFEMK+ E+I V+HL + + D H VRIGWSL
Sbjct: 306  LSASSLTMESFAFLWAGGRASYGVSKGKVCFEMKVTEKIPVRHLYTKDIDIHEVRIGWSL 365

Query: 935  DSCSTQLGEEPFSYGYGGTGKKSTNSRFENYGDKFAENDVIGCFVDFECGNDVELSFTKN 1114
             +    LGEE FSYGY   G K+ N   E+YG+KF ENDVI CF +FE  ++VELS+ KN
Sbjct: 366  TTSGMLLGEEEFSYGYSLKGIKTCNCETEDYGEKFDENDVITCFANFE-SDEVELSYAKN 424

Query: 1115 GKWMGIAFRIQKEALGGQALYPHVLVKNCAVEFNFGQRAEPYCSVLPGFTFIQHLPLSER 1294
            G+ +G+AF+I KE L G+ L+PHVL  NCAVEFNFGQ+ +PY  +   +TFIQ++PL +R
Sbjct: 425  GQDLGVAFKISKEVLAGRPLFPHVLCHNCAVEFNFGQKEKPYFPIPEEYTFIQNVPLEDR 484

Query: 1295 IRGTVGPKSKAECEILMMVGLPAAGKTTWAIKHAASNPSKKYNILGTNAIMDKMRVMGLR 1474
            +RG  GP+ K +CE++MM+GLP AGKTTW  KHAA NP K YNILGTN IMDKM V G +
Sbjct: 485  VRGPKGPEEKKDCEVVMMIGLPGAGKTTWVTKHAAENPGK-YNILGTNTIMDKMMVAGFK 543

Query: 1475 RQRNYAGRWDVLIQQATQCLNRLIQIAARKKRNYILDQTNVYGSAQRRKMRPFEGFQRKA 1654
            +Q    G+ + L+Q+A QCL + I+IAARKKRN+ILDQTNV  +AQRRKM  F GFQRKA
Sbjct: 544  KQMADTGKLNTLLQRAPQCLGKFIEIAARKKRNFILDQTNVSAAAQRRKMCLFAGFQRKA 603

Query: 1655 IVICPTDEDLKDRTIKRTDEEGKDVPDHAVLEMKANFTLPDVGDFLDEVLFIELQREEAD 1834
            +V+CP DED K RT K+ + EGKD+P+HAVL+MK NFTLP+V +  DE+ ++ELQ+EEA 
Sbjct: 604  VVVCPKDEDYKQRTQKKAEVEGKDLPEHAVLKMKGNFTLPEVAECFDEITYVELQKEEAQ 663

Query: 1835 KLVRQYNEEGRK 1870
            KL+ QY EE +K
Sbjct: 664  KLLEQYKEESKK 675


>ref|NP_001073027.1| heterogeneous nuclear ribonucleoprotein U-like protein 2 [Homo
            sapiens].
          Length = 747

 Score =  432 bits (1110), Expect = e-121
 Identities = 216/434 (49%), Positives = 295/434 (67%), Gaps = 4/434 (0%)
 Frame = +2

Query: 581  RKRPYEENRGRGYFEHREER---RGRSPQPPAXXXXXXXXX-TLVAIDTYNCDLHFKVAR 748
            R+R  ++  GR Y+E REE    R +SP PP           TLV +DTY  DLHF+V++
Sbjct: 202  RQRDEKDEHGRAYYEFREEAYHSRSKSPLPPEEEAKDEEEDQTLVNLDTYTSDLHFQVSK 261

Query: 749  DRSSGYPLTIEGFAYLWSGARASYGVRRGRVCFEMKINEEISVKHLPSTEPDPHVVRIGW 928
            DR  G PL  E F  LWSGAR++YGV +G+VCFE K+ + + +K    TE    ++R+GW
Sbjct: 262  DRYGGQPLFSEKFPTLWSGARSTYGVTKGKVCFEAKVTQNLPMKE-GCTEVS--LLRVGW 318

Query: 929  SLDSCSTQLGEEPFSYGYGGTGKKSTNSRFENYGDKFAENDVIGCFVDFECGNDVELSFT 1108
            S+D    QLGE+ FSYG+ G G K+ N +FE +G  F ENDVIGCF +FE   +VELSF+
Sbjct: 319  SVDFSRPQLGEDEFSYGFDGRGLKAENGQFEEFGQTFGENDVIGCFANFET-EEVELSFS 377

Query: 1109 KNGKWMGIAFRIQKEALGGQALYPHVLVKNCAVEFNFGQRAEPYCSVLPGFTFIQHLPLS 1288
            KNG+ +G+AF I K++L  +AL PHVL KNC VE NFGQ+ EP+      F FI  +P+ 
Sbjct: 378  KNGEDLGVAFWISKDSLADRALLPHVLCKNCVVELNFGQKEEPFFPPPEEFVFIHAVPVE 437

Query: 1289 ERIRGTVGPKSKAECEILMMVGLPAAGKTTWAIKHAASNPSKKYNILGTNAIMDKMRVMG 1468
            ER+R  V PK+  ECE+++MVGLP +GKT WA+K+A  NP K+YN+LG   ++++MR+ G
Sbjct: 438  ERVRTAVPPKTIEECEVILMVGLPGSGKTQWALKYAKENPEKRYNVLGAETVLNQMRMKG 497

Query: 1469 LRRQRNYAGRWDVLIQQATQCLNRLIQIAARKKRNYILDQTNVYGSAQRRKMRPFEGFQR 1648
            L          D+L+QQA+QCL++L+QIA+R KRN+ILDQ NVY S QRRK+  F+ F R
Sbjct: 498  LEEPEMDPKSRDLLVQQASQCLSKLVQIASRTKRNFILDQCNVYNSGQRRKLLLFKTFSR 557

Query: 1649 KAIVICPTDEDLKDRTIKRTDEEGKDVPDHAVLEMKANFTLPDVGDFLDEVLFIELQREE 1828
            K +V+ P +ED K R   R + EG DVP+  +LEMKANF+LP+  D++DEV + EL++EE
Sbjct: 558  KVVVVVPNEEDWKKRLELRKEVEGDDVPESIMLEMKANFSLPEKCDYMDEVTYGELEKEE 617

Query: 1829 ADKLVRQYNEEGRK 1870
            A  +V +Y EE RK
Sbjct: 618  AQPIVTKYKEEARK 631


>ref|NP_004930.1| ATP-dependent RNA helicase DDX1 [Homo sapiens].
          Length = 740

 Score =  112 bits (281), Expect = 1e-24
 Identities = 59/165 (35%), Positives = 94/165 (56%), Gaps = 6/165 (3%)
 Frame = +2

Query: 749  DRSSGYPLTIEGFAYL------WSGARASYGVRRGRVCFEMKINEEISVKHLPSTEPDPH 910
            DR S + +  +G          W G RA+ G+ +G+  +E+  +             D  
Sbjct: 97   DRGSAFAIGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCH-------------DQG 143

Query: 911  VVRIGWSLDSCSTQLGEEPFSYGYGGTGKKSTNSRFENYGDKFAENDVIGCFVDFECGND 1090
            + R+GWS    S  LG + F +G+GGTGKKS N +F+NYG++F  +D IGC++D + G+ 
Sbjct: 144  LCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGH- 202

Query: 1091 VELSFTKNGKWMGIAFRIQKEALGGQALYPHVLVKNCAVEFNFGQ 1225
              + F+KNGK +G+AF I    +  QAL+P  ++KN  ++FNFG+
Sbjct: 203  --VKFSKNGKDLGLAFEIPPH-MKNQALFPACVLKNAELKFNFGE 244


>ref|NP_071347.2| E3 ubiquitin-protein ligase RNF123 [Homo sapiens].
          Length = 1314

 Score = 59.7 bits (143), Expect = 1e-08
 Identities = 43/135 (31%), Positives = 64/135 (47%), Gaps = 5/135 (3%)
 Frame = +2

Query: 911  VVRIGWSLDSCSTQ----LGEEPFSYGYGGTGKKSTNSRFENYGDKFAENDVIGCFVDFE 1078
            +++IGW   SC       +G+   SY Y G   +  N    NYG  +A  D++ C +D +
Sbjct: 146  LMQIGWCTISCRFNQEEGVGDTHNSYAYDGNRVRKWNVTTTNYGKAWAAGDIVSCLIDLD 205

Query: 1079 CGNDVELSFTKNGKWMGIAFRIQKEALGGQALYPHV-LVKNCAVEFNFGQRAEPYCSVLP 1255
             G    LSF  NG  +G AF      L G A +P + L    +V FNFG R  P    + 
Sbjct: 206  DGT---LSFCLNGVSLGTAFENLSRGL-GMAYFPAISLSFKESVAFNFGSR--PLRYPVA 259

Query: 1256 GFTFIQHLPLSERIR 1300
            G+  +Q  P ++ +R
Sbjct: 260  GYRPLQDPPSADLVR 274


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 88,703,676
Number of extensions: 2481199
Number of successful extensions: 10900
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 10743
Number of HSP's successfully gapped: 10
Length of query: 811
Length of database: 18,297,164
Length adjustment: 111
Effective length of query: 700
Effective length of database: 14,638,160
Effective search space: 10246712000
Effective search space used: 10246712000
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002455
         (2435 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_659171.1| heterogeneous nuclear ribonucleoprotein U-like ...   983   0.0  
Alignment   gi|NP_058085.2| heterogeneous nuclear ribonucleoprotein U [Mus ...   516   e-146
Alignment   gi|NP_835190.1| heterogeneous nuclear ribonucleoprotein U-like ...   445   e-134
Alignment   gi|NP_001074665.1| heterogeneous nuclear ribonucleoprotein U-li...   435   e-122
Alignment   gi|NP_598801.1| ATP-dependent RNA helicase DDX1 [Mus musculus].      110   4e-24
Alignment   gi|NP_115932.1| E3 ubiquitin-protein ligase RNF123 [Mus musculu...    60   6e-09

>ref|NP_659171.1| heterogeneous nuclear ribonucleoprotein U-like protein 1 isoform 1
            [Mus musculus].
          Length = 859

 Score =  983 bits (2542), Expect(2) = 0.0
 Identities = 477/502 (95%), Positives = 485/502 (96%)
 Frame = +2

Query: 365  VMDNITRQNQFYETPVIKQENESGYERRPLEMEQQQQAYRPEVKTEMKQEAPTSFLPPEA 544
            VMDNITRQNQFYETPVIKQENES Y+RRPL+ME QQQ Y PE+KTEMKQEAP SFLPPEA
Sbjct: 100  VMDNITRQNQFYETPVIKQENESSYDRRPLDMEPQQQVYHPELKTEMKQEAPPSFLPPEA 159

Query: 545  SQLKPDRQQFQSRKRPYEENRGRGYFEHREERRGRSPQPPAXXXXXXXXXTLVAIDTYNC 724
            SQLK DR QFQ+RKRP+EENRGRGYFEHRE+RRGRSPQPPA         TLVAIDTYNC
Sbjct: 160  SQLKTDRPQFQNRKRPFEENRGRGYFEHREDRRGRSPQPPAEEDEDDFDDTLVAIDTYNC 219

Query: 725  DLHFKVARDRSSGYPLTIEGFAYLWSGARASYGVRRGRVCFEMKINEEISVKHLPSTEPD 904
            DLHFKVARDRSSGYPLTIEGFAYLWSGARASYGVRRGRVCFEMKINEEISVKHLPSTEPD
Sbjct: 220  DLHFKVARDRSSGYPLTIEGFAYLWSGARASYGVRRGRVCFEMKINEEISVKHLPSTEPD 279

Query: 905  PHVVRIGWSLDSCSTQLGEEPFSYGYGGTGKKSTNSRFENYGDKFAENDVIGCFVDFECG 1084
            PHVVRIGWSLDSCSTQLGEEPFSYGYGGTGKKSTNSRFENYGDKFAENDVIGCF DFECG
Sbjct: 280  PHVVRIGWSLDSCSTQLGEEPFSYGYGGTGKKSTNSRFENYGDKFAENDVIGCFADFECG 339

Query: 1085 NDVELSFTKNGKWMGIAFRIQKEALGGQALYPHVLVKNCAVEFNFGQRAEPYCSVLPGFT 1264
            NDVELSFTKNGKWMGIAFRIQKEALGGQALYPHVLVKNCAVEFNFGQRAEPYCSVLPGFT
Sbjct: 340  NDVELSFTKNGKWMGIAFRIQKEALGGQALYPHVLVKNCAVEFNFGQRAEPYCSVLPGFT 399

Query: 1265 FIQHLPLSERIRGTVGPKSKAECEILMMVGLPAAGKTTWAIKHAASNPSKKYNILGTNAI 1444
            FIQHLPLSERIRGT+GPKSKAECEILMMVGLPAAGKTTWAIKHAASNPSKKYNILGTNAI
Sbjct: 400  FIQHLPLSERIRGTIGPKSKAECEILMMVGLPAAGKTTWAIKHAASNPSKKYNILGTNAI 459

Query: 1445 MDKMRVMGLRRQRNYAGRWDVLIQQATQCLNRLIQIAARKKRNYILDQTNVYGSAQRRKM 1624
            MDKMRVMGLRRQRNYAGRWDVLIQQATQCLNRLIQIAARKKRNYILDQTNVYGSAQRRKM
Sbjct: 460  MDKMRVMGLRRQRNYAGRWDVLIQQATQCLNRLIQIAARKKRNYILDQTNVYGSAQRRKM 519

Query: 1625 RPFEGFQRKAIVICPTDEDLKDRTIKRTDEEGKDVPDHAVLEMKANFTLPDVGDFLDEVL 1804
            RPFEGFQRKAIVICPTDEDLKDRT+KRTDEEGKDVPDHAVLEMKANFTLPDVGDFLDEVL
Sbjct: 520  RPFEGFQRKAIVICPTDEDLKDRTVKRTDEEGKDVPDHAVLEMKANFTLPDVGDFLDEVL 579

Query: 1805 FIELQREEADKLVRQYNEEGRK 1870
            FIELQREEADKLVRQYNEEGRK
Sbjct: 580  FIELQREEADKLVRQYNEEGRK 601



 Score = 55.5 bits (132), Expect(2) = 0.0
 Identities = 31/64 (48%), Positives = 33/64 (51%)
 Frame = +3

Query: 174 MDVRRLKVNELREELQRRGLDTRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRPGHN 353
           MDVRRLKVNELREELQRRGLDTRG                              G PGHN
Sbjct: 1   MDVRRLKVNELREELQRRGLDTRGLKAELAERLLAALEAEEPEDERELEADDDPGLPGHN 60

Query: 354 SEEM 365
           +EE+
Sbjct: 61  NEEV 64



 Score = 65.5 bits (158), Expect = 2e-10
 Identities = 33/57 (57%), Positives = 34/57 (59%)
 Frame = +3

Query: 1920 SYSPARNPPGASSYNKNSNIPGSSANXXXXXXXXXXXXXXXXXXXXXXXGGYSQGYT 2090
            SYSPARNPPGASSYNKNSNIPGSSAN                       GGY+QGYT
Sbjct: 719  SYSPARNPPGASSYNKNSNIPGSSANTSTPTVSSYTPPQPSYSQPPYNQGGYTQGYT 775


>ref|NP_058085.2| heterogeneous nuclear ribonucleoprotein U [Mus musculus].
          Length = 800

 Score =  516 bits (1328), Expect = e-146
 Identities = 251/432 (58%), Positives = 320/432 (74%), Gaps = 3/432 (0%)
 Frame = +2

Query: 584  KRPYEENRGRGYFEHREER---RGRSPQPPAXXXXXXXXXTLVAIDTYNCDLHFKVARDR 754
            KRP E++ GRGYFE+ EE    R +SPQPP          T+V +DTYNCDLHFK++RDR
Sbjct: 223  KRPREDH-GRGYFEYIEENKYSRAKSPQPPVEEEDEHFDDTVVCLDTYNCDLHFKISRDR 281

Query: 755  SSGYPLTIEGFAYLWSGARASYGVRRGRVCFEMKINEEISVKHLPSTEPDPHVVRIGWSL 934
             S   LT+E FA+LW+G RASYGV +G+VCFEMK+ E+I V+HL + + D H VRIGWSL
Sbjct: 282  LSASSLTMESFAFLWAGGRASYGVSKGKVCFEMKVTEKIPVRHLYTKDIDIHEVRIGWSL 341

Query: 935  DSCSTQLGEEPFSYGYGGTGKKSTNSRFENYGDKFAENDVIGCFVDFECGNDVELSFTKN 1114
             +    LGEE FSYGY   G K+ N   E+YG+KF ENDVI CF +FE  ++VELS+ KN
Sbjct: 342  TTSGMLLGEEEFSYGYSLKGIKTCNCETEDYGEKFDENDVITCFANFET-DEVELSYAKN 400

Query: 1115 GKWMGIAFRIQKEALGGQALYPHVLVKNCAVEFNFGQRAEPYCSVLPGFTFIQHLPLSER 1294
            G+ +G+AF+I KE L  + L+PHVL  NCAVEFNFGQ+ +PY  +    TFIQ++PL +R
Sbjct: 401  GQDLGVAFKISKEVLADRPLFPHVLCHNCAVEFNFGQKEKPYFPIPEDCTFIQNVPLEDR 460

Query: 1295 IRGTVGPKSKAECEILMMVGLPAAGKTTWAIKHAASNPSKKYNILGTNAIMDKMRVMGLR 1474
            +RG  GP+ K +CE++MM+GLP AGKTTW  KHAA NP K YNILGTN IMDKM V G +
Sbjct: 461  VRGPKGPEEKKDCEVVMMIGLPGAGKTTWVTKHAAENPGK-YNILGTNTIMDKMMVAGFK 519

Query: 1475 RQRNYAGRWDVLIQQATQCLNRLIQIAARKKRNYILDQTNVYGSAQRRKMRPFEGFQRKA 1654
            +Q    G+ + L+Q+A QCL + I+IAARKKRN+ILDQTNV  +AQRRKM  F GFQRKA
Sbjct: 520  KQMADTGKLNTLLQRAPQCLGKFIEIAARKKRNFILDQTNVSAAAQRRKMCLFAGFQRKA 579

Query: 1655 IVICPTDEDLKDRTIKRTDEEGKDVPDHAVLEMKANFTLPDVGDFLDEVLFIELQREEAD 1834
            +V+CP DED K RT K+ + EGKD+P+HAVL+MK NFTLP+V +  DE+ ++ELQ+EEA 
Sbjct: 580  VVVCPKDEDYKQRTQKKAEVEGKDLPEHAVLKMKGNFTLPEVAECFDEITYVELQKEEAQ 639

Query: 1835 KLVRQYNEEGRK 1870
            KL+ QY EE +K
Sbjct: 640  KLLEQYKEESKK 651


>ref|NP_835190.1| heterogeneous nuclear ribonucleoprotein U-like protein 1 isoform 2
            [Mus musculus].
          Length = 340

 Score =  445 bits (1144), Expect(2) = e-134
 Identities = 213/238 (89%), Positives = 219/238 (92%)
 Frame = +2

Query: 365  VMDNITRQNQFYETPVIKQENESGYERRPLEMEQQQQAYRPEVKTEMKQEAPTSFLPPEA 544
            VMDNITRQNQFYETPVIKQENES Y+RRPL+ME QQQ Y PE+KTEMKQEAP SFLPPEA
Sbjct: 100  VMDNITRQNQFYETPVIKQENESSYDRRPLDMEPQQQVYHPELKTEMKQEAPPSFLPPEA 159

Query: 545  SQLKPDRQQFQSRKRPYEENRGRGYFEHREERRGRSPQPPAXXXXXXXXXTLVAIDTYNC 724
            SQLK DR QFQ+RKRP+EENRGRGYFEHRE+RRGRSPQPPA         TLVAIDTYNC
Sbjct: 160  SQLKTDRPQFQNRKRPFEENRGRGYFEHREDRRGRSPQPPAEEDEDDFDDTLVAIDTYNC 219

Query: 725  DLHFKVARDRSSGYPLTIEGFAYLWSGARASYGVRRGRVCFEMKINEEISVKHLPSTEPD 904
            DLHFKVARDRSSGYPLTIEGFAYLWSGARASYGVRRGRVCFEMKINEEISVKHLPSTEPD
Sbjct: 220  DLHFKVARDRSSGYPLTIEGFAYLWSGARASYGVRRGRVCFEMKINEEISVKHLPSTEPD 279

Query: 905  PHVVRIGWSLDSCSTQLGEEPFSYGYGGTGKKSTNSRFENYGDKFAENDVIGCFVDFE 1078
            PHVVRIGWSLDSCSTQLGEEPFSYGYGGTGKKSTNSRFENYGDKFAENDVIGCF   E
Sbjct: 280  PHVVRIGWSLDSCSTQLGEEPFSYGYGGTGKKSTNSRFENYGDKFAENDVIGCFAVLE 337



 Score = 55.5 bits (132), Expect(2) = e-134
 Identities = 31/64 (48%), Positives = 33/64 (51%)
 Frame = +3

Query: 174 MDVRRLKVNELREELQRRGLDTRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRPGHN 353
           MDVRRLKVNELREELQRRGLDTRG                              G PGHN
Sbjct: 1   MDVRRLKVNELREELQRRGLDTRGLKAELAERLLAALEAEEPEDERELEADDDPGLPGHN 60

Query: 354 SEEM 365
           +EE+
Sbjct: 61  NEEV 64


>ref|NP_001074665.1| heterogeneous nuclear ribonucleoprotein U-like protein 2 [Mus
            musculus].
          Length = 745

 Score =  435 bits (1118), Expect = e-122
 Identities = 216/434 (49%), Positives = 296/434 (68%), Gaps = 4/434 (0%)
 Frame = +2

Query: 581  RKRPYEENRGRGYFEHREER---RGRSPQPPAXXXXXXXXX-TLVAIDTYNCDLHFKVAR 748
            R+R  ++  GR Y+E REE    R +SP PP           TLV +DTY  DLHF++++
Sbjct: 200  RQRDEKDEHGRAYYEFREEAYHSRSKSPPPPEEEAKDEEEDQTLVNLDTYTSDLHFQISK 259

Query: 749  DRSSGYPLTIEGFAYLWSGARASYGVRRGRVCFEMKINEEISVKHLPSTEPDPHVVRIGW 928
            DR  G PL  E F  LWSGAR++YGV +G+VCFE K+ + + +K    TE    ++R+GW
Sbjct: 260  DRYGGQPLFSEKFPTLWSGARSTYGVTKGKVCFEAKVTQNLPMKE-GCTEVS--LLRVGW 316

Query: 929  SLDSCSTQLGEEPFSYGYGGTGKKSTNSRFENYGDKFAENDVIGCFVDFECGNDVELSFT 1108
            S+D   +QLGE+ FSYG+ G G K+ N +FE +G  F ENDVIGCF +FE   +VELSF+
Sbjct: 317  SVDFSCSQLGEDEFSYGFDGRGLKAENGQFEEFGQTFGENDVIGCFANFET-EEVELSFS 375

Query: 1109 KNGKWMGIAFRIQKEALGGQALYPHVLVKNCAVEFNFGQRAEPYCSVLPGFTFIQHLPLS 1288
            KNG+ +G+AFRI KE+L  +AL PHVL KNC VE NFGQ+ EP+      F FI  +P+ 
Sbjct: 376  KNGEDLGVAFRISKESLADRALLPHVLCKNCVVELNFGQKEEPFFPPPEEFVFIHAVPVE 435

Query: 1289 ERIRGTVGPKSKAECEILMMVGLPAAGKTTWAIKHAASNPSKKYNILGTNAIMDKMRVMG 1468
            ER+R  V PK+  ECE+++MVGLP +GKT WA+K+A  NP ++YN+LG   ++ +MR+ G
Sbjct: 436  ERVRTAVPPKTIEECEVILMVGLPGSGKTQWALKYAKDNPERRYNVLGAETVLTQMRMKG 495

Query: 1469 LRRQRNYAGRWDVLIQQATQCLNRLIQIAARKKRNYILDQTNVYGSAQRRKMRPFEGFQR 1648
            L          D+L+QQA+QCL++L+QIA+R KRN+ILDQ NVY S QRRK+  F+ F R
Sbjct: 496  LEEPEMDPKSRDLLVQQASQCLSKLVQIASRSKRNFILDQCNVYNSGQRRKLLLFKTFSR 555

Query: 1649 KAIVICPTDEDLKDRTIKRTDEEGKDVPDHAVLEMKANFTLPDVGDFLDEVLFIELQREE 1828
            K +V+ P +ED K R   R + EG DVP+  +LEMKANF+LP+  D++DEV + EL++EE
Sbjct: 556  KVVVVVPNEEDWKRRLELRKEVEGDDVPESIMLEMKANFSLPEKCDYMDEVTYGELEKEE 615

Query: 1829 ADKLVRQYNEEGRK 1870
            A  +V +Y EE RK
Sbjct: 616  AQPIVTKYKEEARK 629


>ref|NP_598801.1| ATP-dependent RNA helicase DDX1 [Mus musculus].
          Length = 740

 Score =  110 bits (276), Expect = 4e-24
 Identities = 58/165 (35%), Positives = 93/165 (56%), Gaps = 6/165 (3%)
 Frame = +2

Query: 749  DRSSGYPLTIEGFAYL------WSGARASYGVRRGRVCFEMKINEEISVKHLPSTEPDPH 910
            DR S + +  +G          W G R + G+ +G+  +E+  +             D  
Sbjct: 97   DRGSAFAIGSDGLCCQSREVKEWHGCRGTRGLLKGKHYYEVSCH-------------DQG 143

Query: 911  VVRIGWSLDSCSTQLGEEPFSYGYGGTGKKSTNSRFENYGDKFAENDVIGCFVDFECGND 1090
            + R+GWS    S  LG + F +G+GGTGKKS N +F+NYG++F  +D IGC++D + G+ 
Sbjct: 144  LCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGH- 202

Query: 1091 VELSFTKNGKWMGIAFRIQKEALGGQALYPHVLVKNCAVEFNFGQ 1225
              + F+KNGK +G+AF I    +  QAL+P  ++KN  ++FNFG+
Sbjct: 203  --VKFSKNGKDLGLAFEIPAH-IKNQALFPACVLKNAELKFNFGE 244


>ref|NP_115932.1| E3 ubiquitin-protein ligase RNF123 [Mus musculus].
          Length = 1314

 Score = 60.5 bits (145), Expect = 6e-09
 Identities = 43/135 (31%), Positives = 64/135 (47%), Gaps = 5/135 (3%)
 Frame = +2

Query: 911  VVRIGWSLDSCSTQ----LGEEPFSYGYGGTGKKSTNSRFENYGDKFAENDVIGCFVDFE 1078
            +++IGW   +C       +G+   SY Y G   +  N    NYG  +A  D++ C +D +
Sbjct: 146  LMQIGWCTINCRFNQEEGVGDTHNSYAYDGNRVRKWNVTTTNYGKAWAAGDIVSCLIDLD 205

Query: 1079 CGNDVELSFTKNGKWMGIAFRIQKEALGGQALYPHV-LVKNCAVEFNFGQRAEPYCSVLP 1255
             G    LSF  NG  +G AF      L G A +P + L    +V FNFG R  P    + 
Sbjct: 206  DGT---LSFCLNGVSLGTAFENLSRGL-GMAYFPAISLSFKESVAFNFGSR--PLRYPVA 259

Query: 1256 GFTFIQHLPLSERIR 1300
            GF  +Q  P ++ +R
Sbjct: 260  GFRPLQDPPFADLVR 274


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 74,773,283
Number of extensions: 2052695
Number of successful extensions: 8850
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 8710
Number of HSP's successfully gapped: 9
Length of query: 811
Length of database: 15,617,559
Length adjustment: 110
Effective length of query: 701
Effective length of database: 12,313,599
Effective search space: 8631832899
Effective search space used: 8631832899
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002455
         (2435 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_003130615.2| PREDICTED: heterogeneous nuclear ribonucleop...   518   e-147
Alignment   gi|XP_003353867.1| PREDICTED: heterogeneous nuclear ribonucleop...   434   e-121
Alignment   gi|XP_003355981.1| PREDICTED: heterogeneous nuclear ribonucleop...   171   2e-42
Alignment   gi|XP_003354965.1| PREDICTED: ATP-dependent RNA helicase DDX1-l...   112   9e-25
Alignment   gi|XP_003132264.1| PREDICTED: e3 ubiquitin-protein ligase RNF12...    59   2e-08

>ref|XP_003130615.2| PREDICTED: heterogeneous nuclear ribonucleoprotein U [Sus scrofa].
          Length = 963

 Score =  518 bits (1333), Expect = e-147
 Identities = 252/432 (58%), Positives = 321/432 (74%), Gaps = 3/432 (0%)
 Frame = +2

Query: 584  KRPYEENRGRGYFEHREER---RGRSPQPPAXXXXXXXXXTLVAIDTYNCDLHFKVARDR 754
            KRP E++ GRGYFE+ EE    R +SPQPP          T+V +DTYNCDLHFK++RDR
Sbjct: 247  KRPREDH-GRGYFEYIEENKYSRAKSPQPPVEEEDEHFDDTVVCLDTYNCDLHFKISRDR 305

Query: 755  SSGYPLTIEGFAYLWSGARASYGVRRGRVCFEMKINEEISVKHLPSTEPDPHVVRIGWSL 934
             S   LT+E FA+LW+G RASYGV +G+VCFEMK+ E+I V+HL + + D H VRIGWSL
Sbjct: 306  LSASSLTMESFAFLWAGGRASYGVSKGKVCFEMKVTEKIPVRHLYTKDIDIHEVRIGWSL 365

Query: 935  DSCSTQLGEEPFSYGYGGTGKKSTNSRFENYGDKFAENDVIGCFVDFECGNDVELSFTKN 1114
             +    LGEE FSYGY   G K+ N   E+YG+KF ENDVI CF +FE  ++VELS+ KN
Sbjct: 366  TTSGMLLGEEEFSYGYSLKGIKTCNCETEDYGEKFDENDVITCFANFE-SDEVELSYAKN 424

Query: 1115 GKWMGIAFRIQKEALGGQALYPHVLVKNCAVEFNFGQRAEPYCSVLPGFTFIQHLPLSER 1294
            G+ +GIAF+I KE L  + L+PHVL  NCAVEFNFGQ+ +PY  +   +TFIQ++PL +R
Sbjct: 425  GQDLGIAFKISKEVLAERPLFPHVLCHNCAVEFNFGQKEKPYFPIPEEYTFIQNVPLEDR 484

Query: 1295 IRGTVGPKSKAECEILMMVGLPAAGKTTWAIKHAASNPSKKYNILGTNAIMDKMRVMGLR 1474
            +RG  GP+ K +CE++MM+GLP AGKTTW  KHAA NP K YNILGTN IMDKM V G +
Sbjct: 485  VRGPKGPEEKKDCEVVMMIGLPGAGKTTWVTKHAAENPGK-YNILGTNTIMDKMMVAGFK 543

Query: 1475 RQRNYAGRWDVLIQQATQCLNRLIQIAARKKRNYILDQTNVYGSAQRRKMRPFEGFQRKA 1654
            +Q    G+ + L+Q+A QCL + I+IAARKKRN+ILDQTNV  +AQRRKM  F GFQRKA
Sbjct: 544  KQMADTGKLNTLLQRAPQCLGKFIEIAARKKRNFILDQTNVSAAAQRRKMCLFAGFQRKA 603

Query: 1655 IVICPTDEDLKDRTIKRTDEEGKDVPDHAVLEMKANFTLPDVGDFLDEVLFIELQREEAD 1834
            +V+CP DED K RT K+ + EGKD+P+HAVL+MK NFTLP+V +  DE+ ++ELQ+EEA 
Sbjct: 604  VVVCPKDEDYKQRTQKKAEVEGKDLPEHAVLKMKGNFTLPEVAECFDEITYVELQKEEAQ 663

Query: 1835 KLVRQYNEEGRK 1870
            KL+ QY EE +K
Sbjct: 664  KLLEQYKEESKK 675


>ref|XP_003353867.1| PREDICTED: heterogeneous nuclear ribonucleoprotein U-like protein 2
            [Sus scrofa].
          Length = 747

 Score =  434 bits (1115), Expect = e-121
 Identities = 217/434 (50%), Positives = 295/434 (67%), Gaps = 4/434 (0%)
 Frame = +2

Query: 581  RKRPYEENRGRGYFEHREER---RGRSPQPPAXXXXXXXXX-TLVAIDTYNCDLHFKVAR 748
            R+R  ++  GR Y+E REE    R +SP PP           TLV +DTY  DLHF+V++
Sbjct: 203  RQRDEKDEHGRAYYEFREEAYHSRSKSPPPPEEEAKDEEEDQTLVNLDTYTSDLHFQVSK 262

Query: 749  DRSSGYPLTIEGFAYLWSGARASYGVRRGRVCFEMKINEEISVKHLPSTEPDPHVVRIGW 928
            DR  G PL  E F  LWSGAR++YGV +G+VCFE K+ + + +K    TE    ++R+GW
Sbjct: 263  DRYGGQPLFSEKFPTLWSGARSTYGVTKGKVCFEAKVTQNLPMKE-GCTEVS--LLRVGW 319

Query: 929  SLDSCSTQLGEEPFSYGYGGTGKKSTNSRFENYGDKFAENDVIGCFVDFECGNDVELSFT 1108
            S+D    QLGE+ FSYG+ G G K+ N +FE +G  F ENDVIGCF +FE   +VELSF+
Sbjct: 320  SVDFSHPQLGEDEFSYGFDGRGLKAENGQFEEFGQTFGENDVIGCFANFEA-EEVELSFS 378

Query: 1109 KNGKWMGIAFRIQKEALGGQALYPHVLVKNCAVEFNFGQRAEPYCSVLPGFTFIQHLPLS 1288
            KNG+ +G+AFRI KE+L  +AL PHVL KNC VE NFGQ+ EP+      F FI  +P+ 
Sbjct: 379  KNGEDLGVAFRISKESLADRALLPHVLCKNCVVELNFGQKEEPFFPPPEEFVFIHAVPVE 438

Query: 1289 ERIRGTVGPKSKAECEILMMVGLPAAGKTTWAIKHAASNPSKKYNILGTNAIMDKMRVMG 1468
            ER+R  V PK+  ECE+++MVGLP +GKT WA+K+A  N  K+YN+LG   ++++MR+ G
Sbjct: 439  ERVRTAVPPKTIEECEVILMVGLPGSGKTQWALKYAKENAEKRYNVLGAETVLNQMRMKG 498

Query: 1469 LRRQRNYAGRWDVLIQQATQCLNRLIQIAARKKRNYILDQTNVYGSAQRRKMRPFEGFQR 1648
            L          D+L+QQA+QCL++L+QIA+R KRN+ILDQ NVY S QRRK+  F+ F R
Sbjct: 499  LEEPEMDPKSRDLLVQQASQCLSKLVQIASRTKRNFILDQCNVYNSGQRRKLLLFKTFSR 558

Query: 1649 KAIVICPTDEDLKDRTIKRTDEEGKDVPDHAVLEMKANFTLPDVGDFLDEVLFIELQREE 1828
            K +V+ P +ED K R   R + EG DVP+  +LEMKANF+LP+  D++DEV + EL++EE
Sbjct: 559  KVVVVVPNEEDWKKRLELRKEVEGDDVPESIMLEMKANFSLPEKCDYMDEVTYGELEKEE 618

Query: 1829 ADKLVRQYNEEGRK 1870
            A  +V +Y EE RK
Sbjct: 619  AQPIVTKYKEEARK 632


>ref|XP_003355981.1| PREDICTED: heterogeneous nuclear ribonucleoprotein U-like protein
            1-like [Sus scrofa].
          Length = 240

 Score =  171 bits (432), Expect = 2e-42
 Identities = 83/83 (100%), Positives = 83/83 (100%)
 Frame = +2

Query: 1622 MRPFEGFQRKAIVICPTDEDLKDRTIKRTDEEGKDVPDHAVLEMKANFTLPDVGDFLDEV 1801
            MRPFEGFQRKAIVICPTDEDLKDRTIKRTDEEGKDVPDHAVLEMKANFTLPDVGDFLDEV
Sbjct: 1    MRPFEGFQRKAIVICPTDEDLKDRTIKRTDEEGKDVPDHAVLEMKANFTLPDVGDFLDEV 60

Query: 1802 LFIELQREEADKLVRQYNEEGRK 1870
            LFIELQREEADKLVRQYNEEGRK
Sbjct: 61   LFIELQREEADKLVRQYNEEGRK 83



 Score = 57.8 bits (138), Expect = 3e-08
 Identities = 26/26 (100%), Positives = 26/26 (100%)
 Frame = +3

Query: 1920 SYSPARNPPGASSYNKNSNIPGSSAN 1997
            SYSPARNPPGASSYNKNSNIPGSSAN
Sbjct: 199  SYSPARNPPGASSYNKNSNIPGSSAN 224


>ref|XP_003354965.1| PREDICTED: ATP-dependent RNA helicase DDX1-like [Sus scrofa].
          Length = 707

 Score =  112 bits (280), Expect = 9e-25
 Identities = 59/165 (35%), Positives = 94/165 (56%), Gaps = 6/165 (3%)
 Frame = +2

Query: 749  DRSSGYPLTIEGFAYL------WSGARASYGVRRGRVCFEMKINEEISVKHLPSTEPDPH 910
            DR S + +  +G          W G RA+ G+ +G+  +E+  +             D  
Sbjct: 97   DRGSAFAIGSDGLCCQSREVKEWHGCRATKGLTKGKHYYEVSCH-------------DQG 143

Query: 911  VVRIGWSLDSCSTQLGEEPFSYGYGGTGKKSTNSRFENYGDKFAENDVIGCFVDFECGND 1090
            + R+GWS    S  LG + F +G+GGTGKKS N +F+NYG++F  +D IGC++D + G+ 
Sbjct: 144  LCRVGWSSMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGH- 202

Query: 1091 VELSFTKNGKWMGIAFRIQKEALGGQALYPHVLVKNCAVEFNFGQ 1225
              + F+KNGK +G+AF I    +  QAL+P  ++KN  ++FNFG+
Sbjct: 203  --VKFSKNGKDLGLAFEIPPH-MKNQALFPACVLKNAELKFNFGE 244


>ref|XP_003132264.1| PREDICTED: e3 ubiquitin-protein ligase RNF123 [Sus scrofa].
          Length = 1314

 Score = 58.5 bits (140), Expect = 2e-08
 Identities = 42/135 (31%), Positives = 64/135 (47%), Gaps = 5/135 (3%)
 Frame = +2

Query: 911  VVRIGWSLDSCSTQ----LGEEPFSYGYGGTGKKSTNSRFENYGDKFAENDVIGCFVDFE 1078
            +++IGW   +C       +G+   SY Y G   +  N    NYG  +A  D++ C +D +
Sbjct: 146  LMQIGWCTINCRFNQEEGVGDTHNSYAYDGNRVRKWNVTTTNYGKAWAAGDIVSCLIDLD 205

Query: 1079 CGNDVELSFTKNGKWMGIAFRIQKEALGGQALYPHV-LVKNCAVEFNFGQRAEPYCSVLP 1255
             G    LSF  NG  +G AF      L G A +P + L    +V FNFG R  P    + 
Sbjct: 206  DGT---LSFCLNGVSLGTAFENLSRGL-GMAYFPAISLSFKESVAFNFGSR--PLRYPVA 259

Query: 1256 GFTFIQHLPLSERIR 1300
            G+  +Q  P ++ +R
Sbjct: 260  GYRPLQDPPRADLVR 274


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 56,481,652
Number of extensions: 1658164
Number of successful extensions: 6774
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 6685
Number of HSP's successfully gapped: 6
Length of query: 811
Length of database: 11,343,932
Length adjustment: 107
Effective length of query: 704
Effective length of database: 8,679,953
Effective search space: 6110686912
Effective search space used: 6110686912
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002455
         (2435 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr06                                                         531   e-148

>Sscrofa_Chr06 
||          Length = 157765593

 Score =  531 bits (268), Expect = e-148
 Identities = 268/268 (100%)
 Strand = Plus / Plus

                                                                            
Query: 1069     ggactttgaatgtggaaatgacgtggaactttccttcaccaaaaatggaaagtggatggg 1128
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45095685 ggactttgaatgtggaaatgacgtggaactttccttcaccaaaaatggaaagtggatggg 45095744

                                                                            
Query: 1129     cattgccttccgaatccagaaggaagctttagggggccaggccctctaccctcatgtcct 1188
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45095745 cattgccttccgaatccagaaggaagctttagggggccaggccctctaccctcatgtcct 45095804

                                                                            
Query: 1189     ggtcaagaattgcgcagtagagttcaacttcgggcagagggcggaaccctactgttctgt 1248
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45095805 ggtcaagaattgcgcagtagagttcaacttcgggcagagggcggaaccctactgttctgt 45095864

                                                                            
Query: 1249     tctcccaggcttcactttcatccagcaccttcccctgagcgagcgaatcaggggcaccgt 1308
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45095865 tctcccaggcttcactttcatccagcaccttcccctgagcgagcgaatcaggggcaccgt 45095924

                                            
Query: 1309     tggaccaaagagcaaggcagagtgtgag 1336
                ||||||||||||||||||||||||||||
Sbjct: 45095925 tggaccaaagagcaaggcagagtgtgag 45095952



 Score =  367 bits (185), Expect = 2e-98
 Identities = 188/189 (99%)
 Strand = Plus / Plus

                                                                            
Query: 174      atggatgtgcgccgtctgaaggtgaacgaacttcgcgaggaactgcagcgccgcggcctg 233
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45075622 atggatgtgcgccgtctgaaggtgaacgaacttcgcgaggaactgcagcgccgcggcctg 45075681

                                                                            
Query: 234      gacactcgtggcctcaaggccgagcttgctgagcggctgcaggcggcgctggaggccgag 293
                ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45075682 gacactcttggcctcaaggccgagcttgctgagcggctgcaggcggcgctggaggccgag 45075741

                                                                            
Query: 294      gagcccgacgacgagcgggagctcgaggccgacgacgaaccggggcgacctgggcacaac 353
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45075742 gagcccgacgacgagcgggagctcgaggccgacgacgaaccggggcgacctgggcacaac 45075801

                         
Query: 354      agcgaggag 362
                |||||||||
Sbjct: 45075802 agcgaggag 45075810



 Score =  365 bits (184), Expect = 8e-98
 Identities = 205/211 (97%), Gaps = 1/211 (0%)
 Strand = Plus / Plus

                                                                            
Query: 2226     cagtatgcccagcagtggaaccagtactatcagaaccagggccagtggacgccatactac 2285
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45109900 cagtatgcccagcagtggaaccagtactatcagaaccagggccagtggacgccatactac 45109959

                                                                            
Query: 2286     gggaactacgactatgggagctactctgggaacacacaggggggcnacagcacacagtag 2345
                |||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||
Sbjct: 45109960 gggaactacgactatgggagctactctgggaacacacaggggggcacaagcacacagtag 45110019

                                                                            
Query: 2346     cagtgtgtcctgagggcccctcccggcttcctccaccagcgcccaccttgggccccctcg 2405
                |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 45110020 cagtgtgtcctgggggcccctcccggcttcctccaccagcgcccaccttggcccccctcg 45110079

                                               
Query: 2406     tcca-ccccactgggtcccgtggtgctgggg 2435
                |||| ||||||||||||||||||||||||||
Sbjct: 45110080 tccacccccactgggtcccgtggtgctgggg 45110110



 Score =  339 bits (171), Expect = 4e-90
 Identities = 171/171 (100%)
 Strand = Plus / Plus

                                                                            
Query: 1587     agacaaatgtttatgggtcagcccagagacgaaaaatgagaccatttgaaggcttccagc 1646
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45105330 agacaaatgtttatgggtcagcccagagacgaaaaatgagaccatttgaaggcttccagc 45105389

                                                                            
Query: 1647     gcaaagctattgtaatttgtcccactgatgaggacctcaaagaccgaacaataaagcgga 1706
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45105390 gcaaagctattgtaatttgtcccactgatgaggacctcaaagaccgaacaataaagcgga 45105449

                                                                   
Query: 1707     ccgatgaagaagggaaggacgtcccagatcatgcggtcctggaaatgaaag 1757
                |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45105450 ccgatgaagaagggaaggacgtcccagatcatgcggtcctggaaatgaaag 45105500



 Score =  311 bits (157), Expect = 1e-81
 Identities = 157/157 (100%)
 Strand = Plus / Plus

                                                                            
Query: 487      agaagtgaagacagagatgaagcaagaagcacccaccagtttcctcccacctgaagcatc 546
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45082151 agaagtgaagacagagatgaagcaagaagcacccaccagtttcctcccacctgaagcatc 45082210

                                                                            
Query: 547      tcaactcaaaccagacagacagcagttccagagtcgcaagaggccttatgaagaaaaccg 606
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45082211 tcaactcaaaccagacagacagcagttccagagtcgcaagaggccttatgaagaaaaccg 45082270

                                                     
Query: 607      gggaagggggtacttcgagcaccgagaggagaggagg 643
                |||||||||||||||||||||||||||||||||||||
Sbjct: 45082271 gggaagggggtacttcgagcaccgagaggagaggagg 45082307



 Score =  291 bits (147), Expect = 9e-76
 Identities = 150/151 (99%)
 Strand = Plus / Plus

                                                                            
Query: 1886     acagccaccaccacagcagcctccaccgccacccagctacagccctgctcggaatccccc 1945
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45107609 acagccaccaccacagcagcctccaccgccacccagctacagccctgctcggaatccccc 45107668

                                                                            
Query: 1946     aggggctagcagctacaacaagaacagcaacatccctggttcaagcgccaataccagcac 2005
                |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45107669 aggggccagcagctacaacaagaacagcaacatccctggttcaagcgccaataccagcac 45107728

                                               
Query: 2006     ccctacagtcagcagctacagccctccacag 2036
                |||||||||||||||||||||||||||||||
Sbjct: 45107729 ccctacagtcagcagctacagccctccacag 45107759



 Score =  278 bits (140), Expect = 1e-71
 Identities = 140/140 (100%)
 Strand = Plus / Plus

                                                                            
Query: 717      ataactgcgaccttcacttcaaggtggcccgagacaggagtagtggctaccctctcacaa 776
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45086703 ataactgcgaccttcacttcaaggtggcccgagacaggagtagtggctaccctctcacaa 45086762

                                                                            
Query: 777      ttgaaggttttgcatacctatggtcaggagcccgtgccagctacggggtcagaaggggcc 836
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45086763 ttgaaggttttgcatacctatggtcaggagcccgtgccagctacggggtcagaaggggcc 45086822

                                    
Query: 837      gtgtgtgctttgagatgaag 856
                ||||||||||||||||||||
Sbjct: 45086823 gtgtgtgctttgagatgaag 45086842



 Score =  254 bits (128), Expect = 2e-64
 Identities = 128/128 (100%)
 Strand = Plus / Plus

                                                                            
Query: 361      agatgtcatggacaatattaccaggcagaaccaattctatgagacaccggtcatcaaaca 420
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45079592 agatgtcatggacaatattaccaggcagaaccaattctatgagacaccggtcatcaaaca 45079651

                                                                            
Query: 421      agaaaacgagtcaggctacgagaggagaccattggaaatggagcaacagcagcaggccta 480
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45079652 agaaaacgagtcaggctacgagaggagaccattggaaatggagcaacagcagcaggccta 45079711

                        
Query: 481      tcgcccag 488
                ||||||||
Sbjct: 45079712 tcgcccag 45079719



 Score =  238 bits (120), Expect = 1e-59
 Identities = 120/120 (100%)
 Strand = Plus / Plus

                                                                            
Query: 1756     agccaacttcacgttgccagatgttggggacttcctggatgaggttctgttcattgagct 1815
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45106110 agccaacttcacgttgccagatgttggggacttcctggatgaggttctgttcattgagct 45106169

                                                                            
Query: 1816     gcagcgggaggaagcagacaagctggtgaggcaatacaacgaggaaggccgcaaggctgg 1875
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45106170 gcagcgggaggaagcagacaagctggtgaggcaatacaacgaggaaggccgcaaggctgg 45106229



 Score =  234 bits (118), Expect = 2e-58
 Identities = 118/118 (100%)
 Strand = Plus / Plus

                                                                            
Query: 2034     cagccgagttacagccagccaccctacaaccaaggaggttacagccagggctacacagcc 2093
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45109167 cagccgagttacagccagccaccctacaaccaaggaggttacagccagggctacacagcc 45109226

                                                                          
Query: 2094     cctccgcctccacctccaccaccacctgcctacaactatgggagctacggcggctaca 2151
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45109227 cctccgcctccacctccaccaccacctgcctacaactatgggagctacggcggctaca 45109284



 Score =  230 bits (116), Expect = 3e-57
 Identities = 116/116 (100%)
 Strand = Plus / Plus

                                                                            
Query: 955      aggcgaagagcctttctcctatggctatggaggcactgggaagaagtccaccaacagccg 1014
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45091097 aggcgaagagcctttctcctatggctatggaggcactgggaagaagtccaccaacagccg 45091156

                                                                        
Query: 1015     gtttgaaaactacggagacaagttcgcagagaatgatgtgattggctgctttgtgg 1070
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45091157 gtttgaaaactacggagacaagttcgcagagaatgatgtgattggctgctttgtgg 45091212



 Score =  204 bits (103), Expect = 2e-49
 Identities = 103/103 (100%)
 Strand = Plus / Plus

                                                                            
Query: 855      agatcaatgaggaaatctctgtcaagcaccttccgtctacagagcctgacccccatgttg 914
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45088952 agatcaatgaggaaatctctgtcaagcaccttccgtctacagagcctgacccccatgttg 45089011

                                                           
Query: 915      tccgtattggttggtccctggactcctgcagcactcagctagg 957
                |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45089012 tccgtattggttggtccctggactcctgcagcactcagctagg 45089054



 Score =  151 bits (76), Expect = 2e-33
 Identities = 76/76 (100%)
 Strand = Plus / Plus

                                                                            
Query: 641      aggggccgatctcctcagcctcccgctgaagaggatgaagatgactttgacgacactctt 700
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45084643 aggggccgatctcctcagcctcccgctgaagaggatgaagatgactttgacgacactctt 45084702

                                
Query: 701      gttgccatcgacacat 716
                ||||||||||||||||
Sbjct: 45084703 gttgccatcgacacat 45084718



 Score =  115 bits (58), Expect = 1e-22
 Identities = 80/90 (88%)
 Strand = Plus / Plus

                                                                            
Query: 41       attttgagccgccgccgccattggagtgggggnnnnnnnntttcccccttcgcctcctga 100
                ||||||||||||||||||| ||||||||||||        ||||||||||||||||||||
Sbjct: 45075492 attttgagccgccgccgcctttggagtgggggcccccccctttcccccttcgcctcctga 45075551

                                              
Query: 101      caggaaaggtttaagggggacagagccctg 130
                ||||||||| ||||||||||||||||||||
Sbjct: 45075552 caggaaagggttaagggggacagagccctg 45075581


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 59,304,593
Number of extensions: 447
Number of successful extensions: 447
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 446
Number of HSP's successfully gapped: 14
Length of query: 2435
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 2413
Effective length of database: 2,808,408,574
Effective search space: 6776689889062
Effective search space used: 6776689889062
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)