Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002527
(1175 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001070450.1| ubiquitin-like protein ATG12 [Bos taurus]. 218 6e-57
Alignment gi|XP_002693131.1| PREDICTED: autophagy-related protein 12-like... 118 1e-26
Alignment gi|XP_002701363.1| PREDICTED: autophagy-related protein 12-like... 118 1e-26
>ref|NP_001070450.1| ubiquitin-like protein ATG12 [Bos taurus].
Length = 140
Score = 218 bits (556), Expect = 6e-57
Identities = 111/140 (79%), Positives = 113/140 (80%)
Frame = +2
Query: 194 MAEEPESALQLPPATAAEGDGXXXXXXXXXXXXXXXXXXXXXGTEEPAGDTKKKIDILLK 373
MAEE ESALQLPP+TA E + GTEEP GDTKKKIDILLK
Sbjct: 1 MAEEQESALQLPPSTAPEAEVPTEVSPETATPEPPSSAAVSPGTEEPVGDTKKKIDILLK 60
Query: 374 AVGDTPIMKTKKWAVERTRTIQGLIDFIKKFLKLVASEQLFIYVNQSFAPSPDQEVGTLY 553
AVGDTPIMKTKKWAVERTRTIQGL DFIKKFLKLVASEQLFIYVNQSFAPSPDQEVGTLY
Sbjct: 61 AVGDTPIMKTKKWAVERTRTIQGLFDFIKKFLKLVASEQLFIYVNQSFAPSPDQEVGTLY 120
Query: 554 ECFGSDGKLVLHYCKSQAWG 613
ECFGSDGKLVLHYCKSQAWG
Sbjct: 121 ECFGSDGKLVLHYCKSQAWG 140
>ref|XP_002693131.1| PREDICTED: autophagy-related protein 12-like [Bos taurus].
Length = 99
Score = 118 bits (295), Expect = 1e-26
Identities = 66/100 (66%), Positives = 70/100 (70%)
Frame = +2
Query: 194 MAEEPESALQLPPATAAEGDGXXXXXXXXXXXXXXXXXXXXXGTEEPAGDTKKKIDILLK 373
MAEE SALQ PP+TA E +G GTEEP DTKKK +ILLK
Sbjct: 1 MAEE--SALQFPPSTAPEAEGPKEVSPETATPEPTSSATVSLGTEEPVADTKKKSNILLK 58
Query: 374 AVGDTPIMKTKKWAVERTRTIQGLIDFIKKFLKLVASEQL 493
AVGDT IMKTKKWAVERT+TIQGLIDFIKKFLKLVASEQL
Sbjct: 59 AVGDTTIMKTKKWAVERTQTIQGLIDFIKKFLKLVASEQL 98
>ref|XP_002701363.1| PREDICTED: autophagy-related protein 12-like [Bos taurus].
Length = 99
Score = 118 bits (295), Expect = 1e-26
Identities = 66/100 (66%), Positives = 70/100 (70%)
Frame = +2
Query: 194 MAEEPESALQLPPATAAEGDGXXXXXXXXXXXXXXXXXXXXXGTEEPAGDTKKKIDILLK 373
MAEE SALQ PP+TA E +G GTEEP DTKKK +ILLK
Sbjct: 1 MAEE--SALQFPPSTAPEAEGPKEVSPETATPEPTSSATVSLGTEEPVADTKKKSNILLK 58
Query: 374 AVGDTPIMKTKKWAVERTRTIQGLIDFIKKFLKLVASEQL 493
AVGDT IMKTKKWAVERT+TIQGLIDFIKKFLKLVASEQL
Sbjct: 59 AVGDTTIMKTKKWAVERTQTIQGLIDFIKKFLKLVASEQL 98
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 38,035,625
Number of extensions: 949316
Number of successful extensions: 4324
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4240
Number of HSP's successfully gapped: 3
Length of query: 391
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 287
Effective length of database: 14,240,222
Effective search space: 4086943714
Effective search space used: 4086943714
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002527
(1175 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_531866.2| PREDICTED: similar to Autophagy protein 12-like... 227 1e-59
Alignment gi|XP_858695.1| PREDICTED: similar to autophagy-related 12-like... 91 2e-18
>ref|XP_531866.2| PREDICTED: similar to Autophagy protein 12-like (APG12-like)
(ATG12) isoform 1 [Canis familiaris].
Length = 140
Score = 227 bits (579), Expect = 1e-59
Identities = 114/140 (81%), Positives = 117/140 (83%)
Frame = +2
Query: 194 MAEEPESALQLPPATAAEGDGXXXXXXXXXXXXXXXXXXXXXGTEEPAGDTKKKIDILLK 373
MAEE ES LQLPP+TAAEG+G GTEEPAGDTKKKID+LLK
Sbjct: 1 MAEESESGLQLPPSTAAEGEGPTEVSPETATPEPPSSAAVSPGTEEPAGDTKKKIDVLLK 60
Query: 374 AVGDTPIMKTKKWAVERTRTIQGLIDFIKKFLKLVASEQLFIYVNQSFAPSPDQEVGTLY 553
AVGDTPIMKTKKWAVERTRTIQGLIDFIKKFLKLVASEQLFIYVNQSFAPSPDQEVGTLY
Sbjct: 61 AVGDTPIMKTKKWAVERTRTIQGLIDFIKKFLKLVASEQLFIYVNQSFAPSPDQEVGTLY 120
Query: 554 ECFGSDGKLVLHYCKSQAWG 613
ECFGSDGKLVLHYCKSQAWG
Sbjct: 121 ECFGSDGKLVLHYCKSQAWG 140
>ref|XP_858695.1| PREDICTED: similar to autophagy-related 12-like isoform 2 [Canis
familiaris].
Length = 52
Score = 90.9 bits (224), Expect = 2e-18
Identities = 40/40 (100%), Positives = 40/40 (100%)
Frame = +2
Query: 494 FIYVNQSFAPSPDQEVGTLYECFGSDGKLVLHYCKSQAWG 613
FIYVNQSFAPSPDQEVGTLYECFGSDGKLVLHYCKSQAWG
Sbjct: 13 FIYVNQSFAPSPDQEVGTLYECFGSDGKLVLHYCKSQAWG 52
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 39,680,636
Number of extensions: 980808
Number of successful extensions: 4212
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4145
Number of HSP's successfully gapped: 2
Length of query: 391
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 286
Effective length of database: 15,374,224
Effective search space: 4397028064
Effective search space used: 4397028064
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002527
(1175 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_004698.3| ubiquitin-like protein ATG12 [Homo sapiens]. 221 8e-58
>ref|NP_004698.3| ubiquitin-like protein ATG12 [Homo sapiens].
Length = 140
Score = 221 bits (564), Expect = 8e-58
Identities = 112/140 (80%), Positives = 115/140 (82%)
Frame = +2
Query: 194 MAEEPESALQLPPATAAEGDGXXXXXXXXXXXXXXXXXXXXXGTEEPAGDTKKKIDILLK 373
MAEEP+S LQLP + AA G+G GTEEPAGDTKKKIDILLK
Sbjct: 1 MAEEPQSVLQLPTSIAAGGEGLTDVSPETTTPEPPSSAAVSPGTEEPAGDTKKKIDILLK 60
Query: 374 AVGDTPIMKTKKWAVERTRTIQGLIDFIKKFLKLVASEQLFIYVNQSFAPSPDQEVGTLY 553
AVGDTPIMKTKKWAVERTRTIQGLIDFIKKFLKLVASEQLFIYVNQSFAPSPDQEVGTLY
Sbjct: 61 AVGDTPIMKTKKWAVERTRTIQGLIDFIKKFLKLVASEQLFIYVNQSFAPSPDQEVGTLY 120
Query: 554 ECFGSDGKLVLHYCKSQAWG 613
ECFGSDGKLVLHYCKSQAWG
Sbjct: 121 ECFGSDGKLVLHYCKSQAWG 140
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 39,051,292
Number of extensions: 967943
Number of successful extensions: 4376
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4293
Number of HSP's successfully gapped: 1
Length of query: 391
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 286
Effective length of database: 14,835,944
Effective search space: 4243079984
Effective search space used: 4243079984
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002527
(1175 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_080493.2| ubiquitin-like protein ATG12 [Mus musculus]. 206 3e-53
>ref|NP_080493.2| ubiquitin-like protein ATG12 [Mus musculus].
Length = 141
Score = 206 bits (524), Expect = 3e-53
Identities = 107/141 (75%), Positives = 110/141 (78%), Gaps = 1/141 (0%)
Frame = +2
Query: 194 MAEEPESALQLPPA-TAAEGDGXXXXXXXXXXXXXXXXXXXXXGTEEPAGDTKKKIDILL 370
M+E+ E LQLP A A G+ GTEEP GDTKKKIDILL
Sbjct: 1 MSEDSEVVLQLPSAPVGAGGESLPELSPETATPEPPSSAAVSPGTEEPPGDTKKKIDILL 60
Query: 371 KAVGDTPIMKTKKWAVERTRTIQGLIDFIKKFLKLVASEQLFIYVNQSFAPSPDQEVGTL 550
KAVGDTPIMKTKKWAVERTRTIQGLIDFIKKFLKLVASEQLFIYVNQSFAPSPDQEVGTL
Sbjct: 61 KAVGDTPIMKTKKWAVERTRTIQGLIDFIKKFLKLVASEQLFIYVNQSFAPSPDQEVGTL 120
Query: 551 YECFGSDGKLVLHYCKSQAWG 613
YECFGSDGKLVLHYCKSQAWG
Sbjct: 121 YECFGSDGKLVLHYCKSQAWG 141
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 33,355,529
Number of extensions: 820862
Number of successful extensions: 3418
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3326
Number of HSP's successfully gapped: 1
Length of query: 391
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 288
Effective length of database: 12,523,851
Effective search space: 3606869088
Effective search space used: 3606869088
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002527
(1175 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001177211.1| autophagy-related protein 12 [Sus scrofa]. 235 4e-62
>ref|NP_001177211.1| autophagy-related protein 12 [Sus scrofa].
Length = 140
Score = 235 bits (599), Expect = 4e-62
Identities = 119/140 (85%), Positives = 119/140 (85%)
Frame = +2
Query: 194 MAEEPESALQLPPATAAEGDGXXXXXXXXXXXXXXXXXXXXXGTEEPAGDTKKKIDILLK 373
MAEEPESALQLPPATAAEGDG GTEEPAGDTKKKIDILLK
Sbjct: 1 MAEEPESALQLPPATAAEGDGPTEVSPETATPEPPSSASVSPGTEEPAGDTKKKIDILLK 60
Query: 374 AVGDTPIMKTKKWAVERTRTIQGLIDFIKKFLKLVASEQLFIYVNQSFAPSPDQEVGTLY 553
AVGDTPIMKTKKWAVERTRTIQGLIDFIKKFLKLVASEQLFIYVNQSFAPSPDQEVGTLY
Sbjct: 61 AVGDTPIMKTKKWAVERTRTIQGLIDFIKKFLKLVASEQLFIYVNQSFAPSPDQEVGTLY 120
Query: 554 ECFGSDGKLVLHYCKSQAWG 613
ECFGSDGKLVLHYCKSQAWG
Sbjct: 121 ECFGSDGKLVLHYCKSQAWG 140
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 24,443,400
Number of extensions: 609302
Number of successful extensions: 2728
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2670
Number of HSP's successfully gapped: 1
Length of query: 391
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 290
Effective length of database: 8,829,335
Effective search space: 2560507150
Effective search space used: 2560507150
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002527
(1175 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 1146 0.0
>Sscrofa_Chr02
|| Length = 162569375
Score = 1146 bits (578), Expect = 0.0
Identities = 609/621 (98%), Gaps = 1/621 (0%)
Strand = Plus / Minus
Query: 555 agtgttttggcagtgatggtaaactggtcctgcattactgcaaatctcaggcttggggat 614
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124835901 agtgttttggcagtgatggtaaactggtcctgcattactgcaaatctcaggcttggggat 124835842
Query: 615 gaactacagaggaacagatctcactaacttaaatctacacaaaggaagcagctctgaaca 674
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124835841 gaactacagaggaacagatctcactaacttaaatctacacaaaggaagcagctctgaaca 124835782
Query: 675 gttttgatctcatggcaagagacatagatgtaatctattcagcatgtatctgctgtgacc 734
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124835781 gttttgatctcatggcaagagacatagatgtaatctattcagcatgtatctgctgtgacc 124835722
Query: 735 catgtttatacatttttaaaaatccacagagtagatgaacctacaaaaatgtcatttgtg 794
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124835721 catgtttatacatttttaaaaatccacagagtagatgaacctacaaaaatgtcatttgtg 124835662
Query: 795 ttactacacaaatcatcataaaaggttgacattagagtatactcattactacagctattg 854
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124835661 ttactacacaaatcatcataaaaggttgacattagagtatactcattactacagctattg 124835602
Query: 855 cttcagagctgcctccaaggtattgaaaaaggagactaagattatgtaaagctgctttta 914
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124835601 cttcagagctgcctccaaggtattgaaaaaggagactaagattatgtaaagctgctttta 124835542
Query: 915 ttaccacttctcaaaatgactgaaattgtttactcataaaattagtattcctgctgannn 974
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124835541 ttaccacttctcaaaatgactgaaattgtttactcataaaattagtattcctgctgattt 124835482
Query: 975 nnnnnncccttcactataaaagtcaacttactaaagttttctttggggacttattcaggg 1034
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124835481 ttttttcccttcactataaaagtcaacttactaaagttttctttggggacttattcaggg 124835422
Query: 1035 aaattcattttatttgaggtatgggatacgccttttcacatttacttttctatctacatt 1094
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124835421 aaattcattttatttgaggtatgggatacgccttttcacatttacttttctatctacatt 124835362
Query: 1095 gctggccttattgcctttacttaggccagcagagggcaacctagctggcagaaagagcta 1154
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124835361 gctggctttattgcc-ttacttaggccagcagagggcaacctagctggcagaaagagcta 124835303
Query: 1155 ggcagttgggttttacatttt 1175
||||||| |||||||||||||
Sbjct: 124835302 ggcagtttggttttacatttt 124835282
Score = 654 bits (330), Expect = 0.0
Identities = 343/346 (99%), Gaps = 1/346 (0%)
Strand = Plus / Minus
Query: 4 agcagttgcgttatcaacggtcagaggactgcagcagcttggacataggggaccaggctg 63
|||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||
Sbjct: 124851472 agcagttgcgttatca-cggtcagaagactgcagcaggttggacataggggaccaggctg 124851414
Query: 64 caatactgactttcgtagtaggttggatacccgcctactccggcgccttcctagcgactc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124851413 caatactgactttcgtagtaggttggatacccgcctactccggcgccttcctagcgactc 124851354
Query: 124 tcaccagctcaaagcccgcccacgacgcgcgcggagcgaccacttccgccctcacctctc 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124851353 tcaccagctcaaagcccgcccacgacgcgcgcggagcgaccacttccgccctcacctctc 124851294
Query: 184 tcggtgcaagatggcagaggagccggagtctgcgctgcagctcccgcccgcaactgctgc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124851293 tcggtgcaagatggcagaggagccggagtctgcgctgcagctcccgcccgcaactgctgc 124851234
Query: 244 tgagggcgatggacctacggaggtctccccagaaactgccactccggaacccccttcttc 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124851233 tgagggcgatggacctacggaggtctccccagaaactgccactccggaacccccttcttc 124851174
Query: 304 cgcttcagtttcccccggaacagaagaacctgccggtgacaccaag 349
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124851173 cgcttcagtttcccccggaacagaagaacctgccggtgacaccaag 124851128
Score = 272 bits (137), Expect = 4e-70
Identities = 137/137 (100%)
Strand = Plus / Minus
Query: 357 ttgacatcctactaaaggctgtgggagacacacctataatgaaaacaaagaaatgggctg 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124841592 ttgacatcctactaaaggctgtgggagacacacctataatgaaaacaaagaaatgggctg 124841533
Query: 417 tagagcgaacccgaaccatccaaggactcattgacttcatcaaaaagtttcttaaacttg 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124841532 tagagcgaacccgaaccatccaaggactcattgacttcatcaaaaagtttcttaaacttg 124841473
Query: 477 tggcttcagaacagttg 493
|||||||||||||||||
Sbjct: 124841472 tggcttcagaacagttg 124841456
Score = 127 bits (64), Expect = 1e-26
Identities = 64/64 (100%)
Strand = Plus / Minus
Query: 493 gtttatttatgtgaatcagtcctttgccccctctccagaccaggaagttggaaccctcta 552
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124836876 gtttatttatgtgaatcagtcctttgccccctctccagaccaggaagttggaaccctcta 124836817
Query: 553 tgag 556
||||
Sbjct: 124836816 tgag 124836813
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 38,957,636
Number of extensions: 311
Number of successful extensions: 311
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 310
Number of HSP's successfully gapped: 5
Length of query: 1175
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1154
Effective length of database: 2,808,413,156
Effective search space: 3240908782024
Effective search space used: 3240908782024
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)