Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002604
(1163 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001033143.1| SWI/SNF-related matrix-associated actin-depe... 488 e-138
Alignment gi|XP_002688984.1| PREDICTED: high mobility group 20 B-like [Bo... 236 3e-62
Alignment gi|NP_001069105.1| high mobility group protein 20A [Bos taurus]. 224 9e-59
Alignment gi|XP_002688460.1| PREDICTED: high-mobility group 20A-like [Bos... 94 2e-19
Alignment gi|NP_001092586.1| SWI/SNF-related matrix-associated actin-depe... 64 2e-10
Alignment gi|NP_001095566.1| thymocyte selection-associated high mobility... 62 1e-09
Alignment gi|NP_001069753.1| high mobility group protein B3 isoform 1 [Bo... 60 3e-09
Alignment gi|NP_001106728.1| high mobility group protein B3 isoform 2 [Bo... 60 3e-09
Alignment gi|NP_001032705.1| high mobility group protein B2 [Bos taurus]. 60 4e-09
Alignment gi|XP_002686711.1| PREDICTED: high-mobility group box 2-like [B... 60 4e-09
>ref|NP_001033143.1| SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily E member 1-related [Bos taurus].
Length = 317
Score = 488 bits (1255), Expect = e-138
Identities = 252/317 (79%), Positives = 254/317 (80%)
Frame = +3
Query: 87 MSHGPKQPGAAAASASGKTPGQHGGFVVAVKQERIEGPRAGEKGSHEEEPVXXXXXXXXX 266
MSHGPKQPGAA+A ASGK PGQHG FVVAVKQER EGPRAGEKGSHEEEPV
Sbjct: 1 MSHGPKQPGAASAPASGKAPGQHGSFVVAVKQERGEGPRAGEKGSHEEEPVKKRGWPKGK 60
Query: 267 XXXXILPNGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPAEKQRYL 446
ILPNGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPAEKQRYL
Sbjct: 61 KRKKILPNGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPAEKQRYL 120
Query: 447 DEAEREKQQYMKELRAYQQSEAYKMCTXXXXXXXXXXXDSGSGLMNTLLNGHKGGDCDGF 626
DEAEREKQQYMKELRAYQQSEAYKMC DS SGLMNTLLNGHKGGDCDGF
Sbjct: 121 DEAEREKQQYMKELRAYQQSEAYKMCAEKIQEKKIKKEDSSSGLMNTLLNGHKGGDCDGF 180
Query: 627 STFDVPIFTEEFLDQNKAREAELRRLRKMNVAFEEQNAVLQRHTQSMSSXXXXXXXXXXX 806
STFDVPIFTEEFLDQNKAREAELRRLRKMNVAFEEQNAVLQRHTQSMSS
Sbjct: 181 STFDVPIFTEEFLDQNKAREAELRRLRKMNVAFEEQNAVLQRHTQSMSSARERLEQELAL 240
Query: 807 XXXXXXXXXXXXXXXXXXXXXSFASLPVPGTGETPTLSTLDFYMARLHGAIERDPAQHEK 986
SFASLPVPGTGETPTLSTLDFYMARLHGAIERDPAQHEK
Sbjct: 241 EERRTLALQQQLQAVRQALTASFASLPVPGTGETPTLSTLDFYMARLHGAIERDPAQHEK 300
Query: 987 LIVRXQEILAQVASEHL 1037
LIVR +EILAQVASEHL
Sbjct: 301 LIVRIKEILAQVASEHL 317
>ref|XP_002688984.1| PREDICTED: high mobility group 20 B-like [Bos taurus].
Length = 160
Score = 236 bits (602), Expect = 3e-62
Identities = 124/158 (78%), Positives = 125/158 (79%)
Frame = +3
Query: 564 SGSGLMNTLLNGHKGGDCDGFSTFDVPIFTEEFLDQNKAREAELRRLRKMNVAFEEQNAV 743
SGSGLMNTLLNGHKGGDCDGFSTFDVPIFTEEFLDQNKAREAELRRLRKMNVAFEEQNAV
Sbjct: 3 SGSGLMNTLLNGHKGGDCDGFSTFDVPIFTEEFLDQNKAREAELRRLRKMNVAFEEQNAV 62
Query: 744 LQRHTQSMSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSFASLPVPGTGETPTLST 923
LQRHTQSMSS SFASLPVPGTGETPTLST
Sbjct: 63 LQRHTQSMSSARERLEQELALEERRTLALQQQLQAVRQALTASFASLPVPGTGETPTLST 122
Query: 924 LDFYMARLHGAIERDPAQHEKLIVRXQEILAQVASEHL 1037
LDFYMARLHGAIERDPAQHEKLIVR +EILAQVASEHL
Sbjct: 123 LDFYMARLHGAIERDPAQHEKLIVRIKEILAQVASEHL 160
>ref|NP_001069105.1| high mobility group protein 20A [Bos taurus].
Length = 347
Score = 224 bits (572), Expect = 9e-59
Identities = 113/242 (46%), Positives = 150/242 (61%)
Frame = +3
Query: 288 NGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPAEKQRYLDEAEREK 467
N PK+P+TGYVRF+NERREQ+R + P++PFPEIT+MLG EWSKL P EKQRYLDEA+R+K
Sbjct: 101 NAPKSPLTGYVRFMNERREQLRAKRPEVPFPEITRMLGNEWSKLPPEEKQRYLDEADRDK 160
Query: 468 QQYMKELRAYQQSEAYKMCTXXXXXXXXXXXDSGSGLMNTLLNGHKGGDCDGFSTFDVPI 647
++YMKEL YQ++EAYK+ + + K + S FD+PI
Sbjct: 161 ERYMKELEQYQKTEAYKVFSRKTQDRQKGKSHRQDAARQATHDHEKEAEVKERSVFDIPI 220
Query: 648 FTEEFLDQNKAREAELRRLRKMNVAFEEQNAVLQRHTQSMSSXXXXXXXXXXXXXXXXXX 827
FTEEFL+ +KAREAELR+LRK N+ FEE+NA LQ+H +SM +
Sbjct: 221 FTEEFLNHSKAREAELRQLRKSNMEFEERNAALQKHVESMRTAVEKLEVDVIQERSRNTV 280
Query: 828 XXXXXXXXXXXXXXSFASLPVPGTGETPTLSTLDFYMARLHGAIERDPAQHEKLIVRXQE 1007
SFAS+P+PG+GETPT+ T+D YM RLH I +P +E I +E
Sbjct: 281 LQQHLETLRQVLTSSFASMPLPGSGETPTVDTIDSYMNRLHSIILANPQDNENFIATVRE 340
Query: 1008 IL 1013
++
Sbjct: 341 VV 342
>ref|XP_002688460.1| PREDICTED: high-mobility group 20A-like [Bos taurus].
Length = 363
Score = 94.0 bits (232), Expect = 2e-19
Identities = 41/68 (60%), Positives = 55/68 (80%)
Frame = +3
Query: 315 YVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPAEKQRYLDEAEREKQQYMKELRA 494
Y FLNE+R Q+R +HP LPFPEITKML A+W+ L +KQRY+ EA+ +KQ+Y++EL+A
Sbjct: 82 YTIFLNEQRSQLRAQHPSLPFPEITKMLAAQWAHLPQEKKQRYVCEADEDKQRYIRELQA 141
Query: 495 YQQSEAYK 518
YQ SEAY+
Sbjct: 142 YQNSEAYR 149
>ref|NP_001092586.1| SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin e1 [Bos taurus].
Length = 415
Score = 64.3 bits (155), Expect = 2e-10
Identities = 30/77 (38%), Positives = 45/77 (58%)
Frame = +3
Query: 285 PNGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPAEKQRYLDEAERE 464
P P P+ Y+R+ + +Q++ +PDL EI K++G W L EKQ YL+E E E
Sbjct: 63 PKPPDKPLMPYMRYSRKVWDQVKASNPDLKLWEIGKIIGGMWRDLTDEEKQEYLNEYEAE 122
Query: 465 KQQYMKELRAYQQSEAY 515
K +Y + ++AY S AY
Sbjct: 123 KIEYNESMKAYHNSPAY 139
>ref|NP_001095566.1| thymocyte selection-associated high mobility group box protein TOX
[Bos taurus].
Length = 527
Score = 62.0 bits (149), Expect = 1e-09
Identities = 39/160 (24%), Positives = 73/160 (45%)
Frame = +3
Query: 27 SVAAAERSGKVSFEVRPGAAMSHGPKQPGAAAASASGKTPGQHGGFVVAVKQERIEGPRA 206
++ ++ S ++ V G+ + P PG+ +A+ S + A K E A
Sbjct: 181 TINQSQLSAQLGLNVGGGSVPHNSPSPPGSKSATPSPSSSVHEDEGDDASKINGGEKRPA 240
Query: 207 GEKGSHEEEPVXXXXXXXXXXXXXILPNGPKAPVTGYVRFLNERREQIRTRHPDLPFPEI 386
+ G + P PN P+ PV+ Y F + + I+ ++P+ F E+
Sbjct: 241 SDMGKKPKTPKKKKKKD---------PNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEV 291
Query: 387 TKMLGAEWSKLQPAEKQRYLDEAEREKQQYMKELRAYQQS 506
+K++ + W L +KQ Y + E K++Y+K+L AY+ S
Sbjct: 292 SKIVASMWDGLGEEQKQVYKKKTEAAKKEYLKQLAAYRAS 331
>ref|NP_001069753.1| high mobility group protein B3 isoform 1 [Bos taurus].
Length = 236
Score = 60.5 bits (145), Expect = 3e-09
Identities = 25/72 (34%), Positives = 46/72 (63%)
Frame = +3
Query: 285 PNGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPAEKQRYLDEAERE 464
PN PK P +G+ F +E R +I++ +P + ++ K LG W+ L +EKQ Y+++A +
Sbjct: 126 PNAPKRPPSGFFLFCSEFRPKIKSANPGISIGDVAKKLGEMWNNLSDSEKQPYINKAAKL 185
Query: 465 KQQYMKELRAYQ 500
K++Y K++ Y+
Sbjct: 186 KEKYEKDVADYK 197
>ref|NP_001106728.1| high mobility group protein B3 isoform 2 [Bos taurus].
Length = 200
Score = 60.5 bits (145), Expect = 3e-09
Identities = 25/72 (34%), Positives = 46/72 (63%)
Frame = +3
Query: 285 PNGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPAEKQRYLDEAERE 464
PN PK P +G+ F +E R +I++ +P + ++ K LG W+ L +EKQ Y+++A +
Sbjct: 90 PNAPKRPPSGFFLFCSEFRPKIKSANPGISIGDVAKKLGEMWNNLSDSEKQPYINKAAKL 149
Query: 465 KQQYMKELRAYQ 500
K++Y K++ Y+
Sbjct: 150 KEKYEKDVADYK 161
>ref|NP_001032705.1| high mobility group protein B2 [Bos taurus].
Length = 209
Score = 60.1 bits (144), Expect = 4e-09
Identities = 30/81 (37%), Positives = 47/81 (58%), Gaps = 3/81 (3%)
Frame = +3
Query: 285 PNGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPAEKQRYLDEAERE 464
PN PK P + + F +E R +I++ HP L + K LG WS+ +KQ Y +A +
Sbjct: 92 PNAPKRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 151
Query: 465 KQQYMKELRAYQ---QSEAYK 518
K++Y K++ AY+ +SEA K
Sbjct: 152 KEKYEKDIAAYRAKGKSEAGK 172
Score = 49.7 bits (117), Expect = 5e-06
Identities = 22/73 (30%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Frame = +3
Query: 285 PNGPKAPVTGYVRFLNERREQIRTRHPD--LPFPEITKMLGAEWSKLQPAEKQRYLDEAE 458
PN P+ ++ Y F+ RE+ + +HPD + F E +K W + EK ++ D A+
Sbjct: 6 PNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMAK 65
Query: 459 REKQQYMKELRAY 497
+K +Y +E++ Y
Sbjct: 66 SDKARYDREMKNY 78
>ref|XP_002686711.1| PREDICTED: high-mobility group box 2-like [Bos taurus].
Length = 283
Score = 60.1 bits (144), Expect = 4e-09
Identities = 30/81 (37%), Positives = 47/81 (58%), Gaps = 3/81 (3%)
Frame = +3
Query: 285 PNGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPAEKQRYLDEAERE 464
PN PK P + + F +E R +I++ HP L + K LG WS+ +KQ Y +A +
Sbjct: 166 PNAPKRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 225
Query: 465 KQQYMKELRAYQ---QSEAYK 518
K++Y K++ AY+ +SEA K
Sbjct: 226 KEKYEKDIAAYRAKGKSEAGK 246
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 38,992,302
Number of extensions: 1033212
Number of successful extensions: 5696
Number of sequences better than 1.0e-05: 35
Number of HSP's gapped: 5671
Number of HSP's successfully gapped: 36
Length of query: 387
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 283
Effective length of database: 14,240,222
Effective search space: 4029982826
Effective search space used: 4029982826
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002604
(1163 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_854847.1| PREDICTED: similar to SWI/SNF-related matrix-as... 419 e-117
Alignment gi|XP_867224.1| PREDICTED: similar to high-mobility group 20A i... 227 2e-59
Alignment gi|XP_867235.1| PREDICTED: similar to high-mobility group 20A i... 224 1e-58
Alignment gi|XP_544786.2| PREDICTED: similar to high-mobility group 20A i... 224 2e-58
Alignment gi|XP_853367.1| PREDICTED: similar to high-mobility group 20A i... 224 2e-58
Alignment gi|XP_867217.1| PREDICTED: similar to high-mobility group 20A i... 221 1e-57
Alignment gi|XP_537645.2| PREDICTED: similar to SWI/SNF-related matrix-as... 64 2e-10
Alignment gi|XP_863005.1| PREDICTED: similar to SWI/SNF-related matrix-as... 64 2e-10
Alignment gi|XP_851010.1| PREDICTED: similar to SWI/SNF-related matrix-as... 64 2e-10
Alignment gi|XP_543194.2| PREDICTED: similar to high-mobility group box 2... 60 4e-09
>ref|XP_854847.1| PREDICTED: similar to SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily E member
1-related (SMARCE1-related protein) (HMG domain protein
HMG20B) (Structural DNA-binding protein BRAF35)
(BRCA2-associated factor 35) (Sox-like tr... [Canis
familiaris].
Length = 306
Score = 419 bits (1076), Expect = e-117
Identities = 223/314 (71%), Positives = 228/314 (72%), Gaps = 1/314 (0%)
Frame = +3
Query: 87 MSHGPKQPGAAAASASGKTPGQHGGFVVAVKQERIEGPRAGEKGSHEEEPVXXXXXXXXX 266
MSHG KQPGAAAA A GK PG HGGFVVAVKQER EGPRAGEKGSHEEEPV
Sbjct: 1 MSHGSKQPGAAAAPAGGKAPGPHGGFVVAVKQERGEGPRAGEKGSHEEEPVKKRGWPKGK 60
Query: 267 XXXXILPNGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPAEKQRYL 446
ILPNGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPAEKQRYL
Sbjct: 61 KRKKILPNGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPAEKQRYL 120
Query: 447 DEAEREKQQYMKELRAYQQSEAYKMCTXXXXXXXXXXXDSGSGLMNTLLNGHKGGDCDGF 626
DEAEREKQQYMKELRAYQQSEAYKMCT DSGSGLMNTLLNGHKGGDCDGF
Sbjct: 121 DEAEREKQQYMKELRAYQQSEAYKMCTEKIQEKKIKKEDSGSGLMNTLLNGHKGGDCDGF 180
Query: 627 STFDVPIFTEEFLDQNKAREAELRRLRKMNVAFEE-QNAVLQRHTQSMSSXXXXXXXXXX 803
STFDVPIFTEEFLDQNKAREAE+RRLRKMNVAFEE + + H + S
Sbjct: 181 STFDVPIFTEEFLDQNKAREAEMRRLRKMNVAFEEKRRRAAEAHAEHSS----------- 229
Query: 804 XXXXXXXXXXXXXXXXXXXXXXSFASLPVPGTGETPTLSTLDFYMARLHGAIERDPAQHE 983
TPTL TLDFYMARLHGAIERDPAQHE
Sbjct: 230 ----------------------------------TPTLGTLDFYMARLHGAIERDPAQHE 255
Query: 984 KLIVRXQEILAQVA 1025
KLIVR +EILAQVA
Sbjct: 256 KLIVRIKEILAQVA 269
>ref|XP_867224.1| PREDICTED: similar to high-mobility group 20A isoform 4 [Canis
familiaris].
Length = 351
Score = 227 bits (578), Expect = 2e-59
Identities = 116/246 (47%), Positives = 156/246 (63%), Gaps = 4/246 (1%)
Frame = +3
Query: 288 NGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPAEKQRYLDEAEREK 467
N PK+P+TGYVRF+NERREQ+R + P++PFPEIT+MLG EWSKL P EKQRYLDEA+R+K
Sbjct: 101 NAPKSPLTGYVRFMNERREQLRAKRPEVPFPEITRMLGNEWSKLPPEEKQRYLDEADRDK 160
Query: 468 QQYMKELRAYQQSEAYKMCTXXXXXXXXXXXDSGSGLMNTLLNG----HKGGDCDGFSTF 635
++YMKEL YQ++EAYK+ + + + + +LNG K + S F
Sbjct: 161 ERYMKELEQYQKTEAYKVFSRKTQDRQKGKSHRQAKIRSCILNGLSHPAKETEVKERSVF 220
Query: 636 DVPIFTEEFLDQNKAREAELRRLRKMNVAFEEQNAVLQRHTQSMSSXXXXXXXXXXXXXX 815
D+PIFTEEFL+ +KAREAELR+LRK N+ FEE+NA LQ+H +SM +
Sbjct: 221 DIPIFTEEFLNHSKAREAELRQLRKSNMEFEERNAALQKHVESMRTAVEKLEVDVIQERS 280
Query: 816 XXXXXXXXXXXXXXXXXXSFASLPVPGTGETPTLSTLDFYMARLHGAIERDPAQHEKLIV 995
SFAS+P+PG+GETPT+ T+D YM RLH I +P +E I
Sbjct: 281 RNTVLQQHLETLRQVLTSSFASMPLPGSGETPTVDTIDSYMNRLHSIILANPQDNENFIA 340
Query: 996 RXQEIL 1013
+E++
Sbjct: 341 TVREVV 346
>ref|XP_867235.1| PREDICTED: similar to high-mobility group 20A isoform 5 [Canis
familiaris].
Length = 353
Score = 224 bits (571), Expect = 1e-58
Identities = 115/248 (46%), Positives = 153/248 (61%), Gaps = 6/248 (2%)
Frame = +3
Query: 288 NGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPAEKQRYLDEAEREK 467
N PK+P+TGYVRF+NERREQ+R + P++PFPEIT+MLG EWSKL P EKQRYLDEA+R+K
Sbjct: 101 NAPKSPLTGYVRFMNERREQLRAKRPEVPFPEITRMLGNEWSKLPPEEKQRYLDEADRDK 160
Query: 468 QQYMKELRAYQQSEAYKMCTXXXXXXXXXXXDSGSGLMNTLLN------GHKGGDCDGFS 629
++YMKEL YQ++EAYK+ + G+ +N K + S
Sbjct: 161 ERYMKELEQYQKTEAYKVFSRKTQDRQKGKSHRQDGVRGKRINCFVTLDSQKETEVKERS 220
Query: 630 TFDVPIFTEEFLDQNKAREAELRRLRKMNVAFEEQNAVLQRHTQSMSSXXXXXXXXXXXX 809
FD+PIFTEEFL+ +KAREAELR+LRK N+ FEE+NA LQ+H +SM +
Sbjct: 221 VFDIPIFTEEFLNHSKAREAELRQLRKSNMEFEERNAALQKHVESMRTAVEKLEVDVIQE 280
Query: 810 XXXXXXXXXXXXXXXXXXXXSFASLPVPGTGETPTLSTLDFYMARLHGAIERDPAQHEKL 989
SFAS+P+PG+GETPT+ T+D YM RLH I +P +E
Sbjct: 281 RSRNTVLQQHLETLRQVLTSSFASMPLPGSGETPTVDTIDSYMNRLHSIILANPQDNENF 340
Query: 990 IVRXQEIL 1013
I +E++
Sbjct: 341 IATVREVV 348
>ref|XP_544786.2| PREDICTED: similar to high-mobility group 20A isoform 1 [Canis
familiaris].
Length = 347
Score = 224 bits (570), Expect = 2e-58
Identities = 113/242 (46%), Positives = 150/242 (61%)
Frame = +3
Query: 288 NGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPAEKQRYLDEAEREK 467
N PK+P+TGYVRF+NERREQ+R + P++PFPEIT+MLG EWSKL P EKQRYLDEA+R+K
Sbjct: 101 NAPKSPLTGYVRFMNERREQLRAKRPEVPFPEITRMLGNEWSKLPPEEKQRYLDEADRDK 160
Query: 468 QQYMKELRAYQQSEAYKMCTXXXXXXXXXXXDSGSGLMNTLLNGHKGGDCDGFSTFDVPI 647
++YMKEL YQ++EAYK+ + + K + S FD+PI
Sbjct: 161 ERYMKELEQYQKTEAYKVFSRKTQDRQKGKSHRQDAARQATHDHEKETEVKERSVFDIPI 220
Query: 648 FTEEFLDQNKAREAELRRLRKMNVAFEEQNAVLQRHTQSMSSXXXXXXXXXXXXXXXXXX 827
FTEEFL+ +KAREAELR+LRK N+ FEE+NA LQ+H +SM +
Sbjct: 221 FTEEFLNHSKAREAELRQLRKSNMEFEERNAALQKHVESMRTAVEKLEVDVIQERSRNTV 280
Query: 828 XXXXXXXXXXXXXXSFASLPVPGTGETPTLSTLDFYMARLHGAIERDPAQHEKLIVRXQE 1007
SFAS+P+PG+GETPT+ T+D YM RLH I +P +E I +E
Sbjct: 281 LQQHLETLRQVLTSSFASMPLPGSGETPTVDTIDSYMNRLHSIILANPQDNENFIATVRE 340
Query: 1008 IL 1013
++
Sbjct: 341 VV 342
>ref|XP_853367.1| PREDICTED: similar to high-mobility group 20A isoform 2 [Canis
familiaris].
Length = 347
Score = 224 bits (570), Expect = 2e-58
Identities = 113/242 (46%), Positives = 150/242 (61%)
Frame = +3
Query: 288 NGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPAEKQRYLDEAEREK 467
N PK+P+TGYVRF+NERREQ+R + P++PFPEIT+MLG EWSKL P EKQRYLDEA+R+K
Sbjct: 101 NAPKSPLTGYVRFMNERREQLRAKRPEVPFPEITRMLGNEWSKLPPEEKQRYLDEADRDK 160
Query: 468 QQYMKELRAYQQSEAYKMCTXXXXXXXXXXXDSGSGLMNTLLNGHKGGDCDGFSTFDVPI 647
++YMKEL YQ++EAYK+ + + K + S FD+PI
Sbjct: 161 ERYMKELEQYQKTEAYKVFSRKTQDRQKGKSHRQDAARQATHDHEKETEVKERSVFDIPI 220
Query: 648 FTEEFLDQNKAREAELRRLRKMNVAFEEQNAVLQRHTQSMSSXXXXXXXXXXXXXXXXXX 827
FTEEFL+ +KAREAELR+LRK N+ FEE+NA LQ+H +SM +
Sbjct: 221 FTEEFLNHSKAREAELRQLRKSNMEFEERNAALQKHVESMRTAVEKLEVDVIQERSRNTV 280
Query: 828 XXXXXXXXXXXXXXSFASLPVPGTGETPTLSTLDFYMARLHGAIERDPAQHEKLIVRXQE 1007
SFAS+P+PG+GETPT+ T+D YM RLH I +P +E I +E
Sbjct: 281 LQQHLETLRQVLTSSFASMPLPGSGETPTVDTIDSYMNRLHSIILANPQDNENFIATVRE 340
Query: 1008 IL 1013
++
Sbjct: 341 VV 342
>ref|XP_867217.1| PREDICTED: similar to high-mobility group 20A isoform 3 [Canis
familiaris].
Length = 351
Score = 221 bits (563), Expect = 1e-57
Identities = 117/248 (47%), Positives = 154/248 (62%), Gaps = 6/248 (2%)
Frame = +3
Query: 288 NGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPAEKQRYLDEAEREK 467
N PK+P+TGYVRF+NERREQ+R + P++PFPEIT+MLG EWSKL P EKQRYLDEA+R+K
Sbjct: 101 NAPKSPLTGYVRFMNERREQLRAKRPEVPFPEITRMLGNEWSKLPPEEKQRYLDEADRDK 160
Query: 468 QQYMKELRAYQQSEAYKMCTXXXXXXXXXXXDSGSGLMNTL------LNGHKGGDCDGFS 629
++YMKEL YQ++EAYK+ + S L+ L L K + S
Sbjct: 161 ERYMKELEQYQKTEAYKVFS--RKTQDRQKGKSHRSLLKVLTVCSANLEWTKETEVKERS 218
Query: 630 TFDVPIFTEEFLDQNKAREAELRRLRKMNVAFEEQNAVLQRHTQSMSSXXXXXXXXXXXX 809
FD+PIFTEEFL+ +KAREAELR+LRK N+ FEE+NA LQ+H +SM +
Sbjct: 219 VFDIPIFTEEFLNHSKAREAELRQLRKSNMEFEERNAALQKHVESMRTAVEKLEVDVIQE 278
Query: 810 XXXXXXXXXXXXXXXXXXXXSFASLPVPGTGETPTLSTLDFYMARLHGAIERDPAQHEKL 989
SFAS+P+PG+GETPT+ T+D YM RLH I +P +E
Sbjct: 279 RSRNTVLQQHLETLRQVLTSSFASMPLPGSGETPTVDTIDSYMNRLHSIILANPQDNENF 338
Query: 990 IVRXQEIL 1013
I +E++
Sbjct: 339 IATVREVV 346
>ref|XP_537645.2| PREDICTED: similar to SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin e1 isoform 1
[Canis familiaris].
Length = 435
Score = 64.3 bits (155), Expect = 2e-10
Identities = 30/77 (38%), Positives = 45/77 (58%)
Frame = +3
Query: 285 PNGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPAEKQRYLDEAERE 464
P P P+ Y+R+ + +Q++ +PDL EI K++G W L EKQ YL+E E E
Sbjct: 63 PKPPDKPLMPYMRYSRKVWDQVKASNPDLKLWEIGKIIGGMWRDLTDEEKQEYLNEYEAE 122
Query: 465 KQQYMKELRAYQQSEAY 515
K +Y + ++AY S AY
Sbjct: 123 KIEYNESMKAYHNSPAY 139
>ref|XP_863005.1| PREDICTED: similar to SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin e1 isoform 8
[Canis familiaris].
Length = 376
Score = 64.3 bits (155), Expect = 2e-10
Identities = 30/77 (38%), Positives = 45/77 (58%)
Frame = +3
Query: 285 PNGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPAEKQRYLDEAERE 464
P P P+ Y+R+ + +Q++ +PDL EI K++G W L EKQ YL+E E E
Sbjct: 28 PKPPDKPLMPYMRYSRKVWDQVKASNPDLKLWEIGKIIGGMWRDLTDEEKQEYLNEYEAE 87
Query: 465 KQQYMKELRAYQQSEAY 515
K +Y + ++AY S AY
Sbjct: 88 KIEYNESMKAYHNSPAY 104
>ref|XP_851010.1| PREDICTED: similar to SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin e1 isoform 2
[Canis familiaris].
Length = 411
Score = 64.3 bits (155), Expect = 2e-10
Identities = 30/77 (38%), Positives = 45/77 (58%)
Frame = +3
Query: 285 PNGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPAEKQRYLDEAERE 464
P P P+ Y+R+ + +Q++ +PDL EI K++G W L EKQ YL+E E E
Sbjct: 63 PKPPDKPLMPYMRYSRKVWDQVKASNPDLKLWEIGKIIGGMWRDLTDEEKQEYLNEYEAE 122
Query: 465 KQQYMKELRAYQQSEAY 515
K +Y + ++AY S AY
Sbjct: 123 KIEYNESMKAYHNSPAY 139
>ref|XP_543194.2| PREDICTED: similar to high-mobility group box 2 isoform 1 [Canis
familiaris].
Length = 210
Score = 60.1 bits (144), Expect = 4e-09
Identities = 30/81 (37%), Positives = 47/81 (58%), Gaps = 3/81 (3%)
Frame = +3
Query: 285 PNGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPAEKQRYLDEAERE 464
PN PK P + + F +E R +I++ HP L + K LG WS+ +KQ Y +A +
Sbjct: 92 PNAPKRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 151
Query: 465 KQQYMKELRAYQ---QSEAYK 518
K++Y K++ AY+ +SEA K
Sbjct: 152 KEKYEKDIAAYRAKGKSEAGK 172
Score = 49.7 bits (117), Expect = 5e-06
Identities = 22/73 (30%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Frame = +3
Query: 285 PNGPKAPVTGYVRFLNERREQIRTRHPD--LPFPEITKMLGAEWSKLQPAEKQRYLDEAE 458
PN P+ ++ Y F+ RE+ + +HPD + F E +K W + EK ++ D A+
Sbjct: 6 PNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMAK 65
Query: 459 REKQQYMKELRAY 497
+K +Y +E++ Y
Sbjct: 66 SDKARYDREMKNY 78
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 40,714,284
Number of extensions: 1068382
Number of successful extensions: 5881
Number of sequences better than 1.0e-05: 41
Number of HSP's gapped: 5841
Number of HSP's successfully gapped: 46
Length of query: 387
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 282
Effective length of database: 15,374,224
Effective search space: 4335531168
Effective search space used: 4335531168
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002604
(1163 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_006330.2| SWI/SNF-related matrix-associated actin-depende... 487 e-137
Alignment gi|NP_060670.1| high mobility group protein 20A [Homo sapiens]. 224 2e-58
Alignment gi|NP_003070.3| SWI/SNF-related matrix-associated actin-depende... 64 2e-10
Alignment gi|NP_001124161.1| high mobility group protein B2 [Homo sapiens]. 60 4e-09
Alignment gi|NP_002120.1| high mobility group protein B2 [Homo sapiens]. 60 4e-09
Alignment gi|NP_001124160.1| high mobility group protein B2 [Homo sapiens]. 60 4e-09
Alignment gi|NP_005333.2| high mobility group protein B3 [Homo sapiens]. 60 5e-09
Alignment gi|NP_055544.1| thymocyte selection-associated high mobility gr... 59 1e-08
Alignment gi|NP_055643.1| TOX high mobility group box family member 4 [Ho... 58 2e-08
Alignment gi|NP_001139660.1| TOX high mobility group box family member 3 ... 58 2e-08
>ref|NP_006330.2| SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily E member 1-related [Homo sapiens].
Length = 317
Score = 487 bits (1253), Expect = e-137
Identities = 251/317 (79%), Positives = 252/317 (79%)
Frame = +3
Query: 87 MSHGPKQPGAAAASASGKTPGQHGGFVVAVKQERIEGPRAGEKGSHEEEPVXXXXXXXXX 266
MSHGPKQPGAAAA A GK PGQHGGFVV VKQER EGPRAGEKGSHEEEPV
Sbjct: 1 MSHGPKQPGAAAAPAGGKAPGQHGGFVVTVKQERGEGPRAGEKGSHEEEPVKKRGWPKGK 60
Query: 267 XXXXILPNGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPAEKQRYL 446
ILPNGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQP EKQRYL
Sbjct: 61 KRKKILPNGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPTEKQRYL 120
Query: 447 DEAEREKQQYMKELRAYQQSEAYKMCTXXXXXXXXXXXDSGSGLMNTLLNGHKGGDCDGF 626
DEAEREKQQYMKELRAYQQSEAYKMCT DS SGLMNTLLNGHKGGDCDGF
Sbjct: 121 DEAEREKQQYMKELRAYQQSEAYKMCTEKIQEKKIKKEDSSSGLMNTLLNGHKGGDCDGF 180
Query: 627 STFDVPIFTEEFLDQNKAREAELRRLRKMNVAFEEQNAVLQRHTQSMSSXXXXXXXXXXX 806
STFDVPIFTEEFLDQNKAREAELRRLRKMNVAFEEQNAVLQRHTQSMSS
Sbjct: 181 STFDVPIFTEEFLDQNKAREAELRRLRKMNVAFEEQNAVLQRHTQSMSSARERLEQELAL 240
Query: 807 XXXXXXXXXXXXXXXXXXXXXSFASLPVPGTGETPTLSTLDFYMARLHGAIERDPAQHEK 986
SFASLPVPGTGETPTL TLDFYMARLHGAIERDPAQHEK
Sbjct: 241 EERRTLALQQQLQAVRQALTASFASLPVPGTGETPTLGTLDFYMARLHGAIERDPAQHEK 300
Query: 987 LIVRXQEILAQVASEHL 1037
LIVR +EILAQVASEHL
Sbjct: 301 LIVRIKEILAQVASEHL 317
>ref|NP_060670.1| high mobility group protein 20A [Homo sapiens].
Length = 347
Score = 224 bits (570), Expect = 2e-58
Identities = 113/242 (46%), Positives = 150/242 (61%)
Frame = +3
Query: 288 NGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPAEKQRYLDEAEREK 467
N PK+P+TGYVRF+NERREQ+R + P++PFPEIT+MLG EWSKL P EKQRYLDEA+R+K
Sbjct: 101 NAPKSPLTGYVRFMNERREQLRAKRPEVPFPEITRMLGNEWSKLPPEEKQRYLDEADRDK 160
Query: 468 QQYMKELRAYQQSEAYKMCTXXXXXXXXXXXDSGSGLMNTLLNGHKGGDCDGFSTFDVPI 647
++YMKEL YQ++EAYK+ + + K + S FD+PI
Sbjct: 161 ERYMKELEQYQKTEAYKVFSRKTQDRQKGKSHRQDAARQATHDHEKETEVKERSVFDIPI 220
Query: 648 FTEEFLDQNKAREAELRRLRKMNVAFEEQNAVLQRHTQSMSSXXXXXXXXXXXXXXXXXX 827
FTEEFL+ +KAREAELR+LRK N+ FEE+NA LQ+H +SM +
Sbjct: 221 FTEEFLNHSKAREAELRQLRKSNMEFEERNAALQKHVESMRTAVEKLEVDVIQERSRNTV 280
Query: 828 XXXXXXXXXXXXXXSFASLPVPGTGETPTLSTLDFYMARLHGAIERDPAQHEKLIVRXQE 1007
SFAS+P+PG+GETPT+ T+D YM RLH I +P +E I +E
Sbjct: 281 LQQHLETLRQVLTSSFASMPLPGSGETPTVDTIDSYMNRLHSIILANPQDNENFIATVRE 340
Query: 1008 IL 1013
++
Sbjct: 341 VV 342
>ref|NP_003070.3| SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily E member 1 [Homo sapiens].
Length = 411
Score = 64.3 bits (155), Expect = 2e-10
Identities = 30/77 (38%), Positives = 45/77 (58%)
Frame = +3
Query: 285 PNGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPAEKQRYLDEAERE 464
P P P+ Y+R+ + +Q++ +PDL EI K++G W L EKQ YL+E E E
Sbjct: 63 PKPPDKPLMPYMRYSRKVWDQVKASNPDLKLWEIGKIIGGMWRDLTDEEKQEYLNEYEAE 122
Query: 465 KQQYMKELRAYQQSEAY 515
K +Y + ++AY S AY
Sbjct: 123 KIEYNESMKAYHNSPAY 139
>ref|NP_001124161.1| high mobility group protein B2 [Homo sapiens].
Length = 209
Score = 60.1 bits (144), Expect = 4e-09
Identities = 30/81 (37%), Positives = 47/81 (58%), Gaps = 3/81 (3%)
Frame = +3
Query: 285 PNGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPAEKQRYLDEAERE 464
PN PK P + + F +E R +I++ HP L + K LG WS+ +KQ Y +A +
Sbjct: 92 PNAPKRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 151
Query: 465 KQQYMKELRAYQ---QSEAYK 518
K++Y K++ AY+ +SEA K
Sbjct: 152 KEKYEKDIAAYRAKGKSEAGK 172
Score = 49.7 bits (117), Expect = 5e-06
Identities = 22/73 (30%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Frame = +3
Query: 285 PNGPKAPVTGYVRFLNERREQIRTRHPD--LPFPEITKMLGAEWSKLQPAEKQRYLDEAE 458
PN P+ ++ Y F+ RE+ + +HPD + F E +K W + EK ++ D A+
Sbjct: 6 PNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMAK 65
Query: 459 REKQQYMKELRAY 497
+K +Y +E++ Y
Sbjct: 66 SDKARYDREMKNY 78
>ref|NP_002120.1| high mobility group protein B2 [Homo sapiens].
Length = 209
Score = 60.1 bits (144), Expect = 4e-09
Identities = 30/81 (37%), Positives = 47/81 (58%), Gaps = 3/81 (3%)
Frame = +3
Query: 285 PNGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPAEKQRYLDEAERE 464
PN PK P + + F +E R +I++ HP L + K LG WS+ +KQ Y +A +
Sbjct: 92 PNAPKRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 151
Query: 465 KQQYMKELRAYQ---QSEAYK 518
K++Y K++ AY+ +SEA K
Sbjct: 152 KEKYEKDIAAYRAKGKSEAGK 172
Score = 49.7 bits (117), Expect = 5e-06
Identities = 22/73 (30%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Frame = +3
Query: 285 PNGPKAPVTGYVRFLNERREQIRTRHPD--LPFPEITKMLGAEWSKLQPAEKQRYLDEAE 458
PN P+ ++ Y F+ RE+ + +HPD + F E +K W + EK ++ D A+
Sbjct: 6 PNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMAK 65
Query: 459 REKQQYMKELRAY 497
+K +Y +E++ Y
Sbjct: 66 SDKARYDREMKNY 78
>ref|NP_001124160.1| high mobility group protein B2 [Homo sapiens].
Length = 209
Score = 60.1 bits (144), Expect = 4e-09
Identities = 30/81 (37%), Positives = 47/81 (58%), Gaps = 3/81 (3%)
Frame = +3
Query: 285 PNGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPAEKQRYLDEAERE 464
PN PK P + + F +E R +I++ HP L + K LG WS+ +KQ Y +A +
Sbjct: 92 PNAPKRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 151
Query: 465 KQQYMKELRAYQ---QSEAYK 518
K++Y K++ AY+ +SEA K
Sbjct: 152 KEKYEKDIAAYRAKGKSEAGK 172
Score = 49.7 bits (117), Expect = 5e-06
Identities = 22/73 (30%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Frame = +3
Query: 285 PNGPKAPVTGYVRFLNERREQIRTRHPD--LPFPEITKMLGAEWSKLQPAEKQRYLDEAE 458
PN P+ ++ Y F+ RE+ + +HPD + F E +K W + EK ++ D A+
Sbjct: 6 PNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMAK 65
Query: 459 REKQQYMKELRAY 497
+K +Y +E++ Y
Sbjct: 66 SDKARYDREMKNY 78
>ref|NP_005333.2| high mobility group protein B3 [Homo sapiens].
Length = 200
Score = 59.7 bits (143), Expect = 5e-09
Identities = 25/72 (34%), Positives = 45/72 (62%)
Frame = +3
Query: 285 PNGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPAEKQRYLDEAERE 464
PN PK P +G+ F +E R +I++ +P + ++ K LG W+ L +EKQ Y+ +A +
Sbjct: 90 PNAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLNDSEKQPYITKAAKL 149
Query: 465 KQQYMKELRAYQ 500
K++Y K++ Y+
Sbjct: 150 KEKYEKDVADYK 161
>ref|NP_055544.1| thymocyte selection-associated high mobility group box protein TOX
[Homo sapiens].
Length = 526
Score = 58.5 bits (140), Expect = 1e-08
Identities = 25/74 (33%), Positives = 45/74 (60%)
Frame = +3
Query: 285 PNGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPAEKQRYLDEAERE 464
PN P+ PV+ Y F + + I+ ++P+ F E++K++ + W L +KQ Y + E
Sbjct: 258 PNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDGLGEEQKQVYKKKTEAA 317
Query: 465 KQQYMKELRAYQQS 506
K++Y+K+L AY+ S
Sbjct: 318 KKEYLKQLAAYRAS 331
>ref|NP_055643.1| TOX high mobility group box family member 4 [Homo sapiens].
Length = 621
Score = 57.8 bits (138), Expect = 2e-08
Identities = 24/75 (32%), Positives = 45/75 (60%)
Frame = +3
Query: 285 PNGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPAEKQRYLDEAERE 464
PN P+ PV+ Y F + + I+ ++P+ F E++K++ + W L +KQ Y + E
Sbjct: 220 PNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDSLGEEQKQVYKRKTEAA 279
Query: 465 KQQYMKELRAYQQSE 509
K++Y+K L AY+ ++
Sbjct: 280 KKEYLKALAAYKDNQ 294
>ref|NP_001139660.1| TOX high mobility group box family member 3 isoform 2 [Homo
sapiens].
Length = 571
Score = 57.8 bits (138), Expect = 2e-08
Identities = 25/74 (33%), Positives = 44/74 (59%)
Frame = +3
Query: 285 PNGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPAEKQRYLDEAERE 464
PN P+ PV+ Y F + + I+ ++P+ F E++K++ + W L +KQ Y + E
Sbjct: 247 PNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDSLGEEQKQVYKRKTEAA 306
Query: 465 KQQYMKELRAYQQS 506
K++Y+K L AY+ S
Sbjct: 307 KKEYLKALAAYRAS 320
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 39,757,053
Number of extensions: 1031062
Number of successful extensions: 5621
Number of sequences better than 1.0e-05: 29
Number of HSP's gapped: 5590
Number of HSP's successfully gapped: 33
Length of query: 387
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 283
Effective length of database: 14,868,908
Effective search space: 4207900964
Effective search space used: 4207900964
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002604
(1163 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001156638.1| SWI/SNF-related matrix-associated actin-depe... 465 e-131
Alignment gi|NP_001156637.1| SWI/SNF-related matrix-associated actin-depe... 465 e-131
Alignment gi|NP_034570.1| SWI/SNF-related matrix-associated actin-depende... 465 e-131
Alignment gi|NP_080088.1| high mobility group protein 20A [Mus musculus]. 221 6e-58
Alignment gi|NP_065643.1| SWI/SNF-related matrix-associated actin-depende... 64 2e-10
Alignment gi|NP_032278.1| high mobility group protein B2 [Mus musculus]. 59 6e-09
Alignment gi|NP_663757.3| thymocyte selection-associated high mobility gr... 59 6e-09
Alignment gi|NP_032279.1| high mobility group protein B3 [Mus musculus]. 58 1e-08
Alignment gi|NP_001092269.1| TOX high mobility group box family member 2 ... 58 1e-08
Alignment gi|NP_075923.2| TOX high mobility group box family member 4 [Mu... 58 2e-08
>ref|NP_001156638.1| SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily E member 1-related [Mus musculus].
Length = 317
Score = 465 bits (1196), Expect = e-131
Identities = 240/317 (75%), Positives = 247/317 (77%)
Frame = +3
Query: 87 MSHGPKQPGAAAASASGKTPGQHGGFVVAVKQERIEGPRAGEKGSHEEEPVXXXXXXXXX 266
MSHGP+QPGAA A A GKTPGQHG FVVAVKQER EG RAGEKG EEEPV
Sbjct: 1 MSHGPRQPGAATAPAGGKTPGQHGAFVVAVKQERSEGSRAGEKGPQEEEPVKKRGWPKGK 60
Query: 267 XXXXILPNGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPAEKQRYL 446
ILPNGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPAEKQRYL
Sbjct: 61 KRKKILPNGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPAEKQRYL 120
Query: 447 DEAEREKQQYMKELRAYQQSEAYKMCTXXXXXXXXXXXDSGSGLMNTLLNGHKGGDCDGF 626
DEAE+EKQQY+KEL AYQQSEAYK+CT DS SGLMNTLLNGHKG DCDGF
Sbjct: 121 DEAEKEKQQYLKELWAYQQSEAYKVCTEKIQENKIKKEDSSSGLMNTLLNGHKGVDCDGF 180
Query: 627 STFDVPIFTEEFLDQNKAREAELRRLRKMNVAFEEQNAVLQRHTQSMSSXXXXXXXXXXX 806
STFDVPIFTEEFLDQNKAREAELRRLRKMNVAFEEQNAVLQRHTQSMSS
Sbjct: 181 STFDVPIFTEEFLDQNKAREAELRRLRKMNVAFEEQNAVLQRHTQSMSSARERLEQELAL 240
Query: 807 XXXXXXXXXXXXXXXXXXXXXSFASLPVPGTGETPTLSTLDFYMARLHGAIERDPAQHEK 986
SFASLPVPGTGETPTL TLDFYMARLHGAIERDPAQHE+
Sbjct: 241 EERRTLALQQQLQAVRQALTASFASLPVPGTGETPTLGTLDFYMARLHGAIERDPAQHER 300
Query: 987 LIVRXQEILAQVASEHL 1037
LI R +EILA+VASEHL
Sbjct: 301 LIARVKEILARVASEHL 317
>ref|NP_001156637.1| SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily E member 1-related [Mus musculus].
Length = 317
Score = 465 bits (1196), Expect = e-131
Identities = 240/317 (75%), Positives = 247/317 (77%)
Frame = +3
Query: 87 MSHGPKQPGAAAASASGKTPGQHGGFVVAVKQERIEGPRAGEKGSHEEEPVXXXXXXXXX 266
MSHGP+QPGAA A A GKTPGQHG FVVAVKQER EG RAGEKG EEEPV
Sbjct: 1 MSHGPRQPGAATAPAGGKTPGQHGAFVVAVKQERSEGSRAGEKGPQEEEPVKKRGWPKGK 60
Query: 267 XXXXILPNGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPAEKQRYL 446
ILPNGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPAEKQRYL
Sbjct: 61 KRKKILPNGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPAEKQRYL 120
Query: 447 DEAEREKQQYMKELRAYQQSEAYKMCTXXXXXXXXXXXDSGSGLMNTLLNGHKGGDCDGF 626
DEAE+EKQQY+KEL AYQQSEAYK+CT DS SGLMNTLLNGHKG DCDGF
Sbjct: 121 DEAEKEKQQYLKELWAYQQSEAYKVCTEKIQENKIKKEDSSSGLMNTLLNGHKGVDCDGF 180
Query: 627 STFDVPIFTEEFLDQNKAREAELRRLRKMNVAFEEQNAVLQRHTQSMSSXXXXXXXXXXX 806
STFDVPIFTEEFLDQNKAREAELRRLRKMNVAFEEQNAVLQRHTQSMSS
Sbjct: 181 STFDVPIFTEEFLDQNKAREAELRRLRKMNVAFEEQNAVLQRHTQSMSSARERLEQELAL 240
Query: 807 XXXXXXXXXXXXXXXXXXXXXSFASLPVPGTGETPTLSTLDFYMARLHGAIERDPAQHEK 986
SFASLPVPGTGETPTL TLDFYMARLHGAIERDPAQHE+
Sbjct: 241 EERRTLALQQQLQAVRQALTASFASLPVPGTGETPTLGTLDFYMARLHGAIERDPAQHER 300
Query: 987 LIVRXQEILAQVASEHL 1037
LI R +EILA+VASEHL
Sbjct: 301 LIARVKEILARVASEHL 317
>ref|NP_034570.1| SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily E member 1-related [Mus musculus].
Length = 317
Score = 465 bits (1196), Expect = e-131
Identities = 240/317 (75%), Positives = 247/317 (77%)
Frame = +3
Query: 87 MSHGPKQPGAAAASASGKTPGQHGGFVVAVKQERIEGPRAGEKGSHEEEPVXXXXXXXXX 266
MSHGP+QPGAA A A GKTPGQHG FVVAVKQER EG RAGEKG EEEPV
Sbjct: 1 MSHGPRQPGAATAPAGGKTPGQHGAFVVAVKQERSEGSRAGEKGPQEEEPVKKRGWPKGK 60
Query: 267 XXXXILPNGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPAEKQRYL 446
ILPNGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPAEKQRYL
Sbjct: 61 KRKKILPNGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPAEKQRYL 120
Query: 447 DEAEREKQQYMKELRAYQQSEAYKMCTXXXXXXXXXXXDSGSGLMNTLLNGHKGGDCDGF 626
DEAE+EKQQY+KEL AYQQSEAYK+CT DS SGLMNTLLNGHKG DCDGF
Sbjct: 121 DEAEKEKQQYLKELWAYQQSEAYKVCTEKIQENKIKKEDSSSGLMNTLLNGHKGVDCDGF 180
Query: 627 STFDVPIFTEEFLDQNKAREAELRRLRKMNVAFEEQNAVLQRHTQSMSSXXXXXXXXXXX 806
STFDVPIFTEEFLDQNKAREAELRRLRKMNVAFEEQNAVLQRHTQSMSS
Sbjct: 181 STFDVPIFTEEFLDQNKAREAELRRLRKMNVAFEEQNAVLQRHTQSMSSARERLEQELAL 240
Query: 807 XXXXXXXXXXXXXXXXXXXXXSFASLPVPGTGETPTLSTLDFYMARLHGAIERDPAQHEK 986
SFASLPVPGTGETPTL TLDFYMARLHGAIERDPAQHE+
Sbjct: 241 EERRTLALQQQLQAVRQALTASFASLPVPGTGETPTLGTLDFYMARLHGAIERDPAQHER 300
Query: 987 LIVRXQEILAQVASEHL 1037
LI R +EILA+VASEHL
Sbjct: 301 LIARVKEILARVASEHL 317
>ref|NP_080088.1| high mobility group protein 20A [Mus musculus].
Length = 346
Score = 221 bits (564), Expect = 6e-58
Identities = 112/242 (46%), Positives = 149/242 (61%)
Frame = +3
Query: 288 NGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPAEKQRYLDEAEREK 467
N PK+P+TGYVRF+NERREQ+R + P++PFPEIT+MLG EWSKL P EKQRYLDEA+R+K
Sbjct: 100 NAPKSPLTGYVRFMNERREQLRAKRPEVPFPEITRMLGNEWSKLPPEEKQRYLDEADRDK 159
Query: 468 QQYMKELRAYQQSEAYKMCTXXXXXXXXXXXDSGSGLMNTLLNGHKGGDCDGFSTFDVPI 647
++YMKEL YQ++EAYK+ + + K + S FD+PI
Sbjct: 160 ERYMKELEQYQKTEAYKVFSRKTQDRQKGKSHRQDAARQATHDHEKETEVKERSVFDIPI 219
Query: 648 FTEEFLDQNKAREAELRRLRKMNVAFEEQNAVLQRHTQSMSSXXXXXXXXXXXXXXXXXX 827
FTEEFL+ +KAREAELR+LRK N+ FEE+NA LQ+H +SM +
Sbjct: 220 FTEEFLNHSKAREAELRQLRKSNMEFEERNAALQKHVESMRTAVEKLEVDVIQERSRNTV 279
Query: 828 XXXXXXXXXXXXXXSFASLPVPGTGETPTLSTLDFYMARLHGAIERDPAQHEKLIVRXQE 1007
SFAS+P+PG+GE PT+ T+D YM RLH I +P +E I +E
Sbjct: 280 LQQHLETLRQMLTSSFASMPLPGSGEIPTVDTIDSYMNRLHSIILANPQDNENFIATVRE 339
Query: 1008 IL 1013
++
Sbjct: 340 VV 341
>ref|NP_065643.1| SWI/SNF-related matrix-associated actin-dependent regulator
chromatin subfamily E member 1 [Mus musculus].
Length = 411
Score = 64.3 bits (155), Expect = 2e-10
Identities = 30/77 (38%), Positives = 45/77 (58%)
Frame = +3
Query: 285 PNGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPAEKQRYLDEAERE 464
P P P+ Y+R+ + +Q++ +PDL EI K++G W L EKQ YL+E E E
Sbjct: 63 PKPPDKPLMPYMRYSRKVWDQVKASNPDLKLWEIGKIIGGMWRDLTDEEKQEYLNEYEAE 122
Query: 465 KQQYMKELRAYQQSEAY 515
K +Y + ++AY S AY
Sbjct: 123 KIEYNESMKAYHNSPAY 139
>ref|NP_032278.1| high mobility group protein B2 [Mus musculus].
Length = 210
Score = 59.3 bits (142), Expect = 6e-09
Identities = 30/81 (37%), Positives = 46/81 (56%), Gaps = 3/81 (3%)
Frame = +3
Query: 285 PNGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPAEKQRYLDEAERE 464
PN PK P + + F +E R +I+ HP L + K LG WS+ +KQ Y +A +
Sbjct: 92 PNAPKRPPSAFFLFCSENRPKIKIEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 151
Query: 465 KQQYMKELRAYQ---QSEAYK 518
K++Y K++ AY+ +SEA K
Sbjct: 152 KEKYEKDIAAYRAKGKSEAGK 172
Score = 49.3 bits (116), Expect = 6e-06
Identities = 22/73 (30%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Frame = +3
Query: 285 PNGPKAPVTGYVRFLNERREQIRTRHPD--LPFPEITKMLGAEWSKLQPAEKQRYLDEAE 458
PN P+ ++ Y F+ RE+ + +HPD + F E +K W + EK ++ D A+
Sbjct: 6 PNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDLAK 65
Query: 459 REKQQYMKELRAY 497
+K +Y +E++ Y
Sbjct: 66 SDKARYDREMKNY 78
>ref|NP_663757.3| thymocyte selection-associated high mobility group box protein TOX
[Mus musculus].
Length = 526
Score = 59.3 bits (142), Expect = 6e-09
Identities = 27/81 (33%), Positives = 47/81 (58%)
Frame = +3
Query: 285 PNGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPAEKQRYLDEAERE 464
PN P+ PV+ Y F + + I+ ++P+ F E++K++ + W L +KQ Y + E
Sbjct: 258 PNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDGLGEEQKQVYKKKTEAA 317
Query: 465 KQQYMKELRAYQQSEAYKMCT 527
K++Y+K+L AY+ S K T
Sbjct: 318 KKEYLKQLAAYRASLVSKSYT 338
>ref|NP_032279.1| high mobility group protein B3 [Mus musculus].
Length = 200
Score = 58.2 bits (139), Expect = 1e-08
Identities = 25/72 (34%), Positives = 44/72 (61%)
Frame = +3
Query: 285 PNGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPAEKQRYLDEAERE 464
PN PK P +G+ F +E R +I++ +P + ++ K LG W+ L EKQ Y+ +A +
Sbjct: 90 PNAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLSDNEKQPYVTKAAKL 149
Query: 465 KQQYMKELRAYQ 500
K++Y K++ Y+
Sbjct: 150 KEKYEKDVADYK 161
>ref|NP_001092269.1| TOX high mobility group box family member 2 [Mus musculus].
Length = 522
Score = 58.2 bits (139), Expect = 1e-08
Identities = 36/145 (24%), Positives = 67/145 (46%), Gaps = 3/145 (2%)
Frame = +3
Query: 81 AAMSHG-PKQPGAAAA--SASGKTPGQHGGFVVAVKQERIEGPRAGEKGSHEEEPVXXXX 251
+ ++HG P PG+ +A S S T + + E+ G+K + ++
Sbjct: 191 SGIAHGSPSPPGSKSATPSPSSSTQEEESDAHFKISGEKRPSVDPGKKAKNPKKKKKKD- 249
Query: 252 XXXXXXXXXILPNGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPAE 431
PN P+ PV+ Y F + + I+ ++P F +++K++ + W L +
Sbjct: 250 -----------PNEPQKPVSAYALFFRDTQAAIKGQNPSATFGDVSKIVASMWDSLGEEQ 298
Query: 432 KQRYLDEAEREKQQYMKELRAYQQS 506
KQ Y + E K++Y+K L AY+ S
Sbjct: 299 KQAYKRKTEAAKKEYLKALAAYRAS 323
>ref|NP_075923.2| TOX high mobility group box family member 4 [Mus musculus].
Length = 619
Score = 57.8 bits (138), Expect = 2e-08
Identities = 24/75 (32%), Positives = 45/75 (60%)
Frame = +3
Query: 285 PNGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPAEKQRYLDEAERE 464
PN P+ PV+ Y F + + I+ ++P+ F E++K++ + W L +KQ Y + E
Sbjct: 220 PNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDSLGEEQKQVYKRKTEAA 279
Query: 465 KQQYMKELRAYQQSE 509
K++Y+K L AY+ ++
Sbjct: 280 KKEYLKALAAYKDNQ 294
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 33,350,229
Number of extensions: 841268
Number of successful extensions: 4323
Number of sequences better than 1.0e-05: 32
Number of HSP's gapped: 4295
Number of HSP's successfully gapped: 34
Length of query: 387
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 284
Effective length of database: 12,523,851
Effective search space: 3556773684
Effective search space used: 3556773684
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002604
(1163 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003361233.1| PREDICTED: high mobility group protein 20A i... 224 5e-59
Alignment gi|XP_003361232.1| PREDICTED: high mobility group protein 20A i... 224 5e-59
Alignment gi|XP_003356721.1| PREDICTED: high mobility group protein 20A-l... 224 5e-59
Alignment gi|XP_003131515.1| PREDICTED: SWI/SNF-related matrix-associated... 64 1e-10
Alignment gi|XP_003357285.1| PREDICTED: putative upstream-binding factor ... 62 8e-10
Alignment gi|XP_003129795.1| PREDICTED: putative upstream-binding factor ... 61 1e-09
Alignment gi|XP_003135516.1| PREDICTED: high mobility group protein B3-li... 60 2e-09
Alignment gi|NP_999228.1| high mobility group protein B2 [Sus scrofa]. 59 4e-09
Alignment gi|XP_001928498.3| PREDICTED: thymocyte selection-associated hi... 59 7e-09
Alignment gi|XP_003356765.1| PREDICTED: TOX high mobility group box famil... 58 1e-08
>ref|XP_003361233.1| PREDICTED: high mobility group protein 20A isoform 2 [Sus scrofa].
Length = 347
Score = 224 bits (572), Expect = 5e-59
Identities = 113/242 (46%), Positives = 150/242 (61%)
Frame = +3
Query: 288 NGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPAEKQRYLDEAEREK 467
N PK+P+TGYVRF+NERREQ+R + P++PFPEIT+MLG EWSKL P EKQRYLDEA+R+K
Sbjct: 101 NAPKSPLTGYVRFMNERREQLRAKRPEVPFPEITRMLGNEWSKLPPEEKQRYLDEADRDK 160
Query: 468 QQYMKELRAYQQSEAYKMCTXXXXXXXXXXXDSGSGLMNTLLNGHKGGDCDGFSTFDVPI 647
++YMKEL YQ++EAYK+ + + K + S FD+PI
Sbjct: 161 ERYMKELEQYQKTEAYKVFSRKTQDRQKGKSHRQDAARQATHDHEKEAEVKERSVFDIPI 220
Query: 648 FTEEFLDQNKAREAELRRLRKMNVAFEEQNAVLQRHTQSMSSXXXXXXXXXXXXXXXXXX 827
FTEEFL+ +KAREAELR+LRK N+ FEE+NA LQ+H +SM +
Sbjct: 221 FTEEFLNHSKAREAELRQLRKSNMEFEERNAALQKHVESMRTAVEKLEVDVIQERSRNTV 280
Query: 828 XXXXXXXXXXXXXXSFASLPVPGTGETPTLSTLDFYMARLHGAIERDPAQHEKLIVRXQE 1007
SFAS+P+PG+GETPT+ T+D YM RLH I +P +E I +E
Sbjct: 281 LQQHLETLRQVLTSSFASMPLPGSGETPTVDTIDSYMNRLHSIILANPQDNENFIATVRE 340
Query: 1008 IL 1013
++
Sbjct: 341 VV 342
>ref|XP_003361232.1| PREDICTED: high mobility group protein 20A isoform 1 [Sus scrofa].
Length = 347
Score = 224 bits (572), Expect = 5e-59
Identities = 113/242 (46%), Positives = 150/242 (61%)
Frame = +3
Query: 288 NGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPAEKQRYLDEAEREK 467
N PK+P+TGYVRF+NERREQ+R + P++PFPEIT+MLG EWSKL P EKQRYLDEA+R+K
Sbjct: 101 NAPKSPLTGYVRFMNERREQLRAKRPEVPFPEITRMLGNEWSKLPPEEKQRYLDEADRDK 160
Query: 468 QQYMKELRAYQQSEAYKMCTXXXXXXXXXXXDSGSGLMNTLLNGHKGGDCDGFSTFDVPI 647
++YMKEL YQ++EAYK+ + + K + S FD+PI
Sbjct: 161 ERYMKELEQYQKTEAYKVFSRKTQDRQKGKSHRQDAARQATHDHEKEAEVKERSVFDIPI 220
Query: 648 FTEEFLDQNKAREAELRRLRKMNVAFEEQNAVLQRHTQSMSSXXXXXXXXXXXXXXXXXX 827
FTEEFL+ +KAREAELR+LRK N+ FEE+NA LQ+H +SM +
Sbjct: 221 FTEEFLNHSKAREAELRQLRKSNMEFEERNAALQKHVESMRTAVEKLEVDVIQERSRNTV 280
Query: 828 XXXXXXXXXXXXXXSFASLPVPGTGETPTLSTLDFYMARLHGAIERDPAQHEKLIVRXQE 1007
SFAS+P+PG+GETPT+ T+D YM RLH I +P +E I +E
Sbjct: 281 LQQHLETLRQVLTSSFASMPLPGSGETPTVDTIDSYMNRLHSIILANPQDNENFIATVRE 340
Query: 1008 IL 1013
++
Sbjct: 341 VV 342
>ref|XP_003356721.1| PREDICTED: high mobility group protein 20A-like [Sus scrofa].
Length = 347
Score = 224 bits (572), Expect = 5e-59
Identities = 113/242 (46%), Positives = 150/242 (61%)
Frame = +3
Query: 288 NGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPAEKQRYLDEAEREK 467
N PK+P+TGYVRF+NERREQ+R + P++PFPEIT+MLG EWSKL P EKQRYLDEA+R+K
Sbjct: 101 NAPKSPLTGYVRFMNERREQLRAKRPEVPFPEITRMLGNEWSKLPPEEKQRYLDEADRDK 160
Query: 468 QQYMKELRAYQQSEAYKMCTXXXXXXXXXXXDSGSGLMNTLLNGHKGGDCDGFSTFDVPI 647
++YMKEL YQ++EAYK+ + + K + S FD+PI
Sbjct: 161 ERYMKELEQYQKTEAYKVFSRKTQDRQKGKSHRQDAARQATHDHEKEAEVKERSVFDIPI 220
Query: 648 FTEEFLDQNKAREAELRRLRKMNVAFEEQNAVLQRHTQSMSSXXXXXXXXXXXXXXXXXX 827
FTEEFL+ +KAREAELR+LRK N+ FEE+NA LQ+H +SM +
Sbjct: 221 FTEEFLNHSKAREAELRQLRKSNMEFEERNAALQKHVESMRTAVEKLEVDVIQERSRNTV 280
Query: 828 XXXXXXXXXXXXXXSFASLPVPGTGETPTLSTLDFYMARLHGAIERDPAQHEKLIVRXQE 1007
SFAS+P+PG+GETPT+ T+D YM RLH I +P +E I +E
Sbjct: 281 LQQHLETLRQVLTSSFASMPLPGSGETPTVDTIDSYMNRLHSIILANPQDNENFIATVRE 340
Query: 1008 IL 1013
++
Sbjct: 341 VV 342
>ref|XP_003131515.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
regulator chromatin subfamily E member 1-like [Sus
scrofa].
Length = 194
Score = 64.3 bits (155), Expect = 1e-10
Identities = 30/77 (38%), Positives = 45/77 (58%)
Frame = +3
Query: 285 PNGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPAEKQRYLDEAERE 464
P P P+ Y+R+ + +Q++ +PDL EI K++G W L EKQ YL+E E E
Sbjct: 63 PKPPDKPLMPYMRYSRKVWDQVKASNPDLKLWEIGKIIGGMWRDLTDEEKQEYLNEYEAE 122
Query: 465 KQQYMKELRAYQQSEAY 515
K +Y + ++AY S AY
Sbjct: 123 KIEYNESMKAYHNSPAY 139
>ref|XP_003357285.1| PREDICTED: putative upstream-binding factor 1-like protein 3/5-like
[Sus scrofa].
Length = 496
Score = 61.6 bits (148), Expect = 8e-10
Identities = 26/73 (35%), Positives = 45/73 (61%)
Frame = +3
Query: 285 PNGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPAEKQRYLDEAERE 464
P+ PK P+T Y+RF E R Q +HP L E+TK+L E+ KL K +Y + ++E
Sbjct: 191 PDFPKKPLTSYIRFFTEMRPQYLQKHPQLSNQELTKVLSEEYKKLPEQMKLKYTQDFQKE 250
Query: 465 KQQYMKELRAYQQ 503
KQ++ +++ +++
Sbjct: 251 KQEFEEKMAQFKE 263
>ref|XP_003129795.1| PREDICTED: putative upstream-binding factor 1-like protein 3/5-like
[Sus scrofa].
Length = 404
Score = 61.2 bits (147), Expect = 1e-09
Identities = 26/73 (35%), Positives = 45/73 (61%)
Frame = +3
Query: 285 PNGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPAEKQRYLDEAERE 464
P+ PK P+T Y+RF E R Q +HP L E+TK+L E+ KL K +Y + ++E
Sbjct: 97 PDFPKKPLTSYIRFFTEMRPQYLQKHPQLSNQELTKVLSEEYKKLPEQMKLKYTQDFQKE 156
Query: 465 KQQYMKELRAYQQ 503
KQ++ +++ +++
Sbjct: 157 KQEFEEKVAQFKE 169
>ref|XP_003135516.1| PREDICTED: high mobility group protein B3-like [Sus scrofa].
Length = 202
Score = 60.5 bits (145), Expect = 2e-09
Identities = 25/72 (34%), Positives = 46/72 (63%)
Frame = +3
Query: 285 PNGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPAEKQRYLDEAERE 464
PN PK P +G+ F +E R +I++ +P + ++ K LG W+ L +EKQ Y+++A +
Sbjct: 90 PNAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLSDSEKQPYINKAAKL 149
Query: 465 KQQYMKELRAYQ 500
K++Y K++ Y+
Sbjct: 150 KEKYEKDVADYK 161
>ref|NP_999228.1| high mobility group protein B2 [Sus scrofa].
Length = 210
Score = 59.3 bits (142), Expect = 4e-09
Identities = 26/72 (36%), Positives = 42/72 (58%)
Frame = +3
Query: 285 PNGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPAEKQRYLDEAERE 464
PN PK P + + F +E R +I++ HP L + K LG WS+ +KQ Y +A +
Sbjct: 92 PNAPKRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 151
Query: 465 KQQYMKELRAYQ 500
K++Y K++ AY+
Sbjct: 152 KEKYEKDIAAYR 163
Score = 49.7 bits (117), Expect = 3e-06
Identities = 22/73 (30%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Frame = +3
Query: 285 PNGPKAPVTGYVRFLNERREQIRTRHPD--LPFPEITKMLGAEWSKLQPAEKQRYLDEAE 458
PN P+ ++ Y F+ RE+ + +HPD + F E +K W + EK ++ D A+
Sbjct: 6 PNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMAK 65
Query: 459 REKQQYMKELRAY 497
+K +Y +E++ Y
Sbjct: 66 SDKARYDREMKNY 78
>ref|XP_001928498.3| PREDICTED: thymocyte selection-associated high mobility group box
protein TOX [Sus scrofa].
Length = 527
Score = 58.5 bits (140), Expect = 7e-09
Identities = 25/74 (33%), Positives = 45/74 (60%)
Frame = +3
Query: 285 PNGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPAEKQRYLDEAERE 464
PN P+ PV+ Y F + + I+ ++P+ F E++K++ + W L +KQ Y + E
Sbjct: 258 PNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDGLGEEQKQVYKKKTEAA 317
Query: 465 KQQYMKELRAYQQS 506
K++Y+K+L AY+ S
Sbjct: 318 KKEYLKQLAAYRAS 331
>ref|XP_003356765.1| PREDICTED: TOX high mobility group box family member 4 isoform 2
[Sus scrofa].
Length = 597
Score = 57.8 bits (138), Expect = 1e-08
Identities = 24/75 (32%), Positives = 45/75 (60%)
Frame = +3
Query: 285 PNGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPAEKQRYLDEAERE 464
PN P+ PV+ Y F + + I+ ++P+ F E++K++ + W L +KQ Y + E
Sbjct: 197 PNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDSLGEEQKQVYKRKTEAA 256
Query: 465 KQQYMKELRAYQQSE 509
K++Y+K L AY+ ++
Sbjct: 257 KKEYLKALAAYKDNQ 271
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 25,244,728
Number of extensions: 668941
Number of successful extensions: 3733
Number of sequences better than 1.0e-05: 24
Number of HSP's gapped: 3702
Number of HSP's successfully gapped: 25
Length of query: 387
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 286
Effective length of database: 8,829,335
Effective search space: 2525189810
Effective search space used: 2525189810
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002604
(1163 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 216 2e-53
>Sscrofa_Chr02
|| Length = 162569375
Score = 216 bits (109), Expect = 2e-53
Identities = 109/109 (100%)
Strand = Plus / Minus
Query: 125 gtcggcgagcggtaagactccaggacagcacgggggattcgtggttgctgtcaagcaaga 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75665921 gtcggcgagcggtaagactccaggacagcacgggggattcgtggttgctgtcaagcaaga 75665862
Query: 185 gcgcatcgagggcccgcgggcaggagagaaggggtcccacgaggaggag 233
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75665861 gcgcatcgagggcccgcgggcaggagagaaggggtcccacgaggaggag 75665813
Score = 141 bits (71), Expect = 1e-30
Identities = 71/71 (100%)
Strand = Plus / Minus
Query: 1 ggggcgggcttggagcggttggttggagcgtcgcagcagccgagaggtccgggaaagttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75666761 ggggcgggcttggagcggttggttggagcgtcgcagcagccgagaggtccgggaaagttt 75666702
Query: 61 ctttcgaggtg 71
|||||||||||
Sbjct: 75666701 ctttcgaggtg 75666691
Score = 123 bits (62), Expect = 2e-25
Identities = 65/66 (98%)
Strand = Plus / Minus
Query: 61 ctttcgaggtgcggccgggagcggccatgtcccacggccccaagcagcccggcgcggctg 120
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75666435 ctttccaggtgcggccgggagcggccatgtcccacggccccaagcagcccggcgcggctg 75666376
Query: 121 ccgcgt 126
||||||
Sbjct: 75666375 ccgcgt 75666370
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 24,979,271
Number of extensions: 167
Number of successful extensions: 167
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 167
Number of HSP's successfully gapped: 3
Length of query: 1163
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1142
Effective length of database: 2,808,413,156
Effective search space: 3207207824152
Effective search space used: 3207207824152
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)