Animal-Genome cDNA 20110601C-002623


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002623
         (1727 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001095800.1| mRNA-decapping enzyme 1A [Bos taurus].            850   0.0  
Alignment   gi|NP_001029639.1| mRNA-decapping enzyme 1B [Bos taurus].            216   5e-56

>ref|NP_001095800.1| mRNA-decapping enzyme 1A [Bos taurus].
          Length = 579

 Score =  850 bits (2195), Expect = 0.0
 Identities = 444/522 (85%), Positives = 451/522 (86%)
 Frame = +1

Query: 109  MESLSRAGQEMSLAALKQHDPYITSIADLTGQVALYTFCPKANQWEKTDIEGTLFVYRRS 288
            MESLSRAGQEMSLAALKQHDPYITSIADLTGQVALYTFCPKANQWEKTDIEGTLFVYRRS
Sbjct: 1    MESLSRAGQEMSLAALKQHDPYITSIADLTGQVALYTFCPKANQWEKTDIEGTLFVYRRS 60

Query: 289  ASPYHGFTIVNRLNMHNLVEPVNKDLEFQLHEPFLLYRNASLSIYSIWFYDKNDCHRIAK 468
            ASPYHGFTIVNRLNMHNLVEPVNKDLEFQLHEPFLLYRNASLSIYSIWFYDKNDCHRIAK
Sbjct: 61   ASPYHGFTIVNRLNMHNLVEPVNKDLEFQLHEPFLLYRNASLSIYSIWFYDKNDCHRIAK 120

Query: 469  LMADVVEEETRRSQQAARDKQSPNQANGCSDHRPIDILEMLSRAKDEYERNQMGDSNISS 648
            LMADVVEEETRRSQQAARDKQSP+QANGCSDHRPIDILEMLSRAKDEYERNQMGDSNISS
Sbjct: 121  LMADVVEEETRRSQQAARDKQSPSQANGCSDHRPIDILEMLSRAKDEYERNQMGDSNISS 180

Query: 649  PGLQPSTQISNLGSTETLEETPSGLQDKSALSGHKHLTVEELFGTSLPKEQPTVVGLESE 828
            PGLQPSTQISNLGSTETLEETPSGLQDKSA SGHKHLTVEELFGTSL KEQP VVGL+SE
Sbjct: 181  PGLQPSTQISNLGSTETLEETPSGLQDKSAPSGHKHLTVEELFGTSLSKEQPAVVGLDSE 240

Query: 829  EVEKLPGDDSQKXXXXXXXXXXXXXXXXXXXXNMGIRPAAHHSVQPEVTTPVLITPASIT 1008
            EVEKLPGD SQK                    N+G+ PAAH SVQPEVTT VLITPASIT
Sbjct: 241  EVEKLPGDASQK-EPNSFLPFSFEPGGAPQSENLGVHPAAHPSVQPEVTTLVLITPASIT 299

Query: 1009 QSSEKQAPSYAIPLHPVLSPTLPAEASTAQAPPSLPRSTTMMQAVKTTPRQRSPLSSQPV 1188
            QSSEKQAPSYAIPLH VLSP+LPAEAST QAPPSLPR TTMMQ VKT PRQRSPL SQPV
Sbjct: 300  QSSEKQAPSYAIPLHSVLSPSLPAEASTGQAPPSLPRKTTMMQTVKTAPRQRSPLLSQPV 359

Query: 1189 PEXXXXXXXXXXXPFRAPLNVTNTASTSLPSVDLLQKLRLTQQHDQIQTQSLGKGAVAPS 1368
            PE           PFRAPL+VTNT S SLPSVDLLQKLRLT QHDQIQ QSLGKGA APS
Sbjct: 360  PELSHASLTASQSPFRAPLSVTNTTSPSLPSVDLLQKLRLTPQHDQIQPQSLGKGAAAPS 419

Query: 1369 FSPAAGQLATPESFIEPPPKTAAARASASLSNMVLAPLQSMQQNQDPEVFAQPKVLSSAI 1548
            FSPAAGQLATPESFIEP PK  AARA ASLSNMVLAPLQSMQQNQDPEVFAQPKVLSSAI
Sbjct: 420  FSPAAGQLATPESFIEPSPKATAARAPASLSNMVLAPLQSMQQNQDPEVFAQPKVLSSAI 479

Query: 1549 PVAGPXXXXXXXXXXXXXXXXPSVFQQTVTKSSDLERKASSP 1674
            PVA                  PSVFQQTVT+SSDLERKASSP
Sbjct: 480  PVASSPLVPATTSAAPSVLLSPSVFQQTVTRSSDLERKASSP 521


>ref|NP_001029639.1| mRNA-decapping enzyme 1B [Bos taurus].
          Length = 581

 Score =  216 bits (550), Expect = 5e-56
 Identities = 168/508 (33%), Positives = 240/508 (47%), Gaps = 42/508 (8%)
 Frame = +1

Query: 130  GQEMSLAALKQHDPYITSIADLTGQVALYTFCPKANQWEKTDIEGTLFVYRRSASPYHGF 309
            G+++SLAAL++HDPYI+ I D+  QVALYTF  +AN+WEKTD+EGTLFVY RSASP HGF
Sbjct: 11   GRDISLAALRRHDPYISRIVDVASQVALYTFGHRANEWEKTDVEGTLFVYSRSASPKHGF 70

Query: 310  TIVNRLNMHNLVEPVNKDLEFQLHEPFLLYRNASLSIYSIWFYDKNDCHRIAKLMADVVE 489
            TI+NRL+M N  EP+ KDL+F L +PFLLYRNA LSIY IWFYDK +C RIA+LM ++ +
Sbjct: 71   TIMNRLSMENRTEPITKDLDFLLQDPFLLYRNARLSIYGIWFYDKEECQRIAELMKNLTQ 130

Query: 490  EETRRSQQAARDKQSPNQANGCSDHRPIDILEMLSRAKDEY-------ERNQMGDSNI-- 642
             E  ++        SP  + G  + +  DIL ML++AKDEY       E  Q+  S+   
Sbjct: 131  YEQLKAHHGTGAGASP-VSLGSGEGKEADILRMLTKAKDEYTKCKTCSEPKQISSSSAIH 189

Query: 643  SSPGLQPSTQISNLGSTETLEETPSGLQDKSALSGHKHLTVEELFG--TSLPKEQ----P 804
             +P L     +   GS +     P    D       +HL++  LFG     P ++    P
Sbjct: 190  DNPNLIKPIPVKPSGSRQQRGPRPGQTSDPEP----QHLSLTALFGKQDKAPCQEATGPP 245

Query: 805  TVVGLESEEVEKLP---------GDDSQKXXXXXXXXXXXXXXXXXXXXNMGIRPAAHHS 957
              + L+ ++ EK P           +  +                    +M ++P A   
Sbjct: 246  QTLPLQQQQPEKFPMRQGVVRSLSYEEPRRPSPPVDKQLCPAIQKLMVRSMDLQPLAELP 305

Query: 958  VQPEVTTPVLITPASITQSSEKQAPSYAIPLHPVL-------------SPTLPAEASTAQ 1098
                 T  +    A   Q+   ++ + A P    L              P  PA AS+A 
Sbjct: 306  ESRPCTDALRAACAGPAQTGSPRSHALAAPGTQKLLQVQSIPGAENRCEPGAPAPASSAT 365

Query: 1099 APPSLPRSTTMMQAV-KTTPRQRSPLSSQPVPEXXXXXXXXXXXPFRAPLNVTNTASTSL 1275
             P SL + T +  A+   TP  R+    +P P            P   P +   T    +
Sbjct: 366  TPVSLAQPTRLSSALPPQTPGPRA--LPRPAP------------PGPGPGHQPVTGPGEV 411

Query: 1276 PSVDLLQKLRLTQQHDQIQTQSLGKGAVAPSFSPA--AGQLATP-ESFIEPPPKT-AAAR 1443
               +LL++L+  QQ  Q+     G+ A+A  F  A  + +   P E + +PPP T   A 
Sbjct: 412  SPRELLRRLQAVQQEQQLPAP--GRPALAAKFPTATLSTRARNPLEPWRDPPPSTEQPAP 469

Query: 1444 ASASLSNMVLAPLQSMQQNQDPEVFAQP 1527
                LS   +    +      P VFAQP
Sbjct: 470  LLQVLSPQRIPAAATPPPLMSPLVFAQP 497


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.314    0.128    0.369 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 68,194,281
Number of extensions: 1916219
Number of successful extensions: 7655
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 7568
Number of HSP's successfully gapped: 2
Length of query: 575
Length of database: 17,681,374
Length adjustment: 108
Effective length of query: 467
Effective length of database: 14,107,870
Effective search space: 6588375290
Effective search space used: 6588375290
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 36 (18.5 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002623
         (1727 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_849483.1| PREDICTED: similar to decapping enzyme isoform ...   841   0.0  
Alignment   gi|XP_534931.2| PREDICTED: similar to decapping enzyme Dcp1b [C...   206   4e-53
Alignment   gi|XP_858819.1| PREDICTED: similar to MAD homolog 4 interacting...   102   1e-21

>ref|XP_849483.1| PREDICTED: similar to decapping enzyme isoform 1 [Canis familiaris].
          Length = 554

 Score =  841 bits (2173), Expect = 0.0
 Identities = 434/537 (80%), Positives = 451/537 (83%)
 Frame = +1

Query: 109  MESLSRAGQEMSLAALKQHDPYITSIADLTGQVALYTFCPKANQWEKTDIEGTLFVYRRS 288
            MESLSRAGQEMSLAALKQHDPYITSIADLTGQVALYTFCPKANQWEKTDIEGTLFVYRRS
Sbjct: 1    MESLSRAGQEMSLAALKQHDPYITSIADLTGQVALYTFCPKANQWEKTDIEGTLFVYRRS 60

Query: 289  ASPYHGFTIVNRLNMHNLVEPVNKDLEFQLHEPFLLYRNASLSIYSIWFYDKNDCHRIAK 468
            ASPYHGFTIVNRLNMHNLVEPVNKDLEFQLHEPFLLYRNASLSIYSIWFYDKNDCHRIAK
Sbjct: 61   ASPYHGFTIVNRLNMHNLVEPVNKDLEFQLHEPFLLYRNASLSIYSIWFYDKNDCHRIAK 120

Query: 469  LMADVVEEETRRSQQAARDKQSPNQANGCSDHRPIDILEMLSRAKDEYERNQMGDSNISS 648
            LMADVVEEETRRSQQAARDKQSP+QANGCSDHRPIDILEMLSRAKDEYERNQMGDSNISS
Sbjct: 121  LMADVVEEETRRSQQAARDKQSPSQANGCSDHRPIDILEMLSRAKDEYERNQMGDSNISS 180

Query: 649  PGLQPSTQISNLGSTETLEETPSGLQDKSALSGHKHLTVEELFGTSLPKEQPTVVGLESE 828
            PGLQPSTQ+SNLGSTETLEE PSG QDKSA SGHKHLTVEELFGTSLPKEQP V+GL+SE
Sbjct: 181  PGLQPSTQLSNLGSTETLEEMPSGSQDKSAPSGHKHLTVEELFGTSLPKEQPAVMGLDSE 240

Query: 829  EVEKLPGDDSQKXXXXXXXXXXXXXXXXXXXXNMGIRPAAHHSVQPEVTTPVLITPASIT 1008
            EVEKLPGD SQK                    N+G+RPAAHH V PEV  PVLITPASIT
Sbjct: 241  EVEKLPGDASQKESSSLLPFSFEQSGGVPPSENLGVRPAAHHPVPPEVPAPVLITPASIT 300

Query: 1009 QSSEKQAPSYAIPLHPVLSPTLPAEASTAQAPPSLPRSTTMMQAVKTTPRQRSPLSSQPV 1188
            QS EKQAP YA+PL PVLSPTLPA+A TAQ PPSLPR+ T+MQAVKTTPRQRSPL +QPV
Sbjct: 301  QSGEKQAPGYAVPLRPVLSPTLPADAPTAQVPPSLPRNATIMQAVKTTPRQRSPLLTQPV 360

Query: 1189 PEXXXXXXXXXXXPFRAPLNVTNTASTSLPSVDLLQKLRLTQQHDQIQTQSLGKGAVAPS 1368
            PE           PFRAPL+VTNTA TSLPSVDLLQKLRLT QHDQIQTQSLGKGA+APS
Sbjct: 361  PELSHTNLTATQSPFRAPLSVTNTAGTSLPSVDLLQKLRLTPQHDQIQTQSLGKGALAPS 420

Query: 1369 FSPAAGQLATPESFIEPPPKTAAARASASLSNMVLAPLQSMQQNQDPEVFAQPKVLSSAI 1548
            FSPAAGQLATPESFIEPPPKTAAARASASLSNMVLAPLQSMQQNQDP+VFAQPKVLSSA 
Sbjct: 421  FSPAAGQLATPESFIEPPPKTAAARASASLSNMVLAPLQSMQQNQDPDVFAQPKVLSSA- 479

Query: 1549 PVAGPXXXXXXXXXXXXXXXXPSVFQQTVTKSSDLERKASSPFSSHCWNIRKSKKAF 1719
                P                P  F     K      K+  PFS+ CWNIRKS+KAF
Sbjct: 480  SCHRPHTGYCNNHGSVFSPAVPECFPTDSHKVHRPREKSKRPFSTDCWNIRKSEKAF 536


>ref|XP_534931.2| PREDICTED: similar to decapping enzyme Dcp1b [Canis familiaris].
          Length = 612

 Score =  206 bits (525), Expect = 4e-53
 Identities = 178/532 (33%), Positives = 243/532 (45%), Gaps = 66/532 (12%)
 Frame = +1

Query: 130  GQEMSLAALKQHDPYITSIADLTGQVALYTFCPKANQWEKTDIEGTLFVYRRSASPYHGF 309
            G+++SLAAL++HDPYI  I D+  QVALYTF  +AN+WEKTD+EGTLFVY RSASP HGF
Sbjct: 13   GRDISLAALQRHDPYINRIVDVASQVALYTFGHRANEWEKTDVEGTLFVYTRSASPKHGF 72

Query: 310  TIVNRLNMHNLVEPVNKDLEFQLHEPFLLYRNASLSIYSIWFYDKNDCHRIAKLMADVVE 489
            TI+NRL+M N  EP+ KDL+FQL +PFLLYRNA LSIY IWFYDK +C RIA+LM ++ +
Sbjct: 73   TIMNRLSMENRTEPITKDLDFQLQDPFLLYRNARLSIYGIWFYDKEECQRIAELMKNLTQ 132

Query: 490  EETRRSQQAARDKQSPNQANGCSDHRPIDILEMLSRAKDEY-------ERNQMGDSN--I 642
             E  ++ Q      SP   N   + + +DIL ML++AKDEY       E  Q+  S+   
Sbjct: 133  YEQLKAHQGTGAGNSPMILNS-GEGKEVDILRMLTKAKDEYTKCKTCSEPKQITSSSAIY 191

Query: 643  SSPGLQPSTQISNLGSTETLEETPSGLQDKSALSGHKHLTVEELFGTS------------ 786
             +P L     +    + +     P+   D       +HL++  LFG              
Sbjct: 192  DNPNLIKPIPVKPSENQQQRVPRPNQTLDSEC----QHLSLTALFGKQDKSPCQEAVGSP 247

Query: 787  ----------LPKEQPTVVGLESEEVEK-LPGDDSQ--KXXXXXXXXXXXXXXXXXXXXN 927
                      LP  Q  V  L  EE  +  P  + Q                       N
Sbjct: 248  QTIHQQQQQPLPMRQGVVRSLSYEEPRRHSPPSEKQLCPAIQKLMVRSADLHPLSELPEN 307

Query: 928  MGIRPAAHHS--------VQP----EVTTPVLITPASITQSSEKQAPSYAIPLHPVLSPT 1071
               R  + HS        VQP     V T   +   S TQS  ++  S   P +    P+
Sbjct: 308  RPCRNGSTHSAGEVFLGPVQPGSPHSVGTSQHVQSTSRTQSLLEKLQSAPRPANK-YDPS 366

Query: 1072 LPAEASTAQAPPSLPRSTTMMQAVKTTP-------RQRSPLSSQPVPEXXXXXXXXXXXP 1230
             PA AS+  A PSL  STT+  A    P        Q    +    P+           P
Sbjct: 367  TPAPASS--AAPSL--STTVPTAAPGAPVKGLAAQAQVGYFNGSLTPQTLGHQTYGKEQP 422

Query: 1231 FR----APLNVTNTASTSLPS-VDLLQKLRLTQQHDQIQTQSLGKGAVAPSFSPAAGQLA 1395
                   PL+   T+S+ + S  +LL+KL++ QQ  Q+   +  + A+A  F        
Sbjct: 423  THPRPTLPLSGNQTSSSGVISPQELLKKLQIVQQEQQLHASN--RPALAAKFPVVTQSSR 480

Query: 1396 TP---ESFIEPPPKTAAARASASLSN-----MVLAPLQSMQQNQDPEVFAQP 1527
            T    ES+++  P T         ++       LAP   M     P VF QP
Sbjct: 481  TGKALESWMDKTPSTEKQTPLFQATSPPHVPATLAPSLLM----SPMVFTQP 528


>ref|XP_858819.1| PREDICTED: similar to MAD homolog 4 interacting transcription
           coactivator 1 isoform 2 [Canis familiaris].
          Length = 57

 Score =  102 bits (254), Expect = 1e-21
 Identities = 48/48 (100%), Positives = 48/48 (100%)
 Frame = +1

Query: 139 MSLAALKQHDPYITSIADLTGQVALYTFCPKANQWEKTDIEGTLFVYR 282
           MSLAALKQHDPYITSIADLTGQVALYTFCPKANQWEKTDIEGTLFVYR
Sbjct: 1   MSLAALKQHDPYITSIADLTGQVALYTFCPKANQWEKTDIEGTLFVYR 48


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.314    0.128    0.369 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 70,994,249
Number of extensions: 1959407
Number of successful extensions: 8065
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 8000
Number of HSP's successfully gapped: 3
Length of query: 575
Length of database: 18,874,504
Length adjustment: 108
Effective length of query: 467
Effective length of database: 15,274,216
Effective search space: 7133058872
Effective search space used: 7133058872
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 36 (18.5 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002623
         (1727 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_060873.4| mRNA-decapping enzyme 1A [Homo sapiens].             845   0.0  
Alignment   gi|NP_689853.3| mRNA-decapping enzyme 1B [Homo sapiens].             198   1e-50

>ref|NP_060873.4| mRNA-decapping enzyme 1A [Homo sapiens].
          Length = 582

 Score =  845 bits (2184), Expect = 0.0
 Identities = 437/524 (83%), Positives = 453/524 (86%), Gaps = 2/524 (0%)
 Frame = +1

Query: 109  MESLSRAGQEMSLAALKQHDPYITSIADLTGQVALYTFCPKANQWEKTDIEGTLFVYRRS 288
            ME+LSRAGQEMSLAALKQHDPYITSIADLTGQVALYTFCPKANQWEKTDIEGTLFVYRRS
Sbjct: 1    MEALSRAGQEMSLAALKQHDPYITSIADLTGQVALYTFCPKANQWEKTDIEGTLFVYRRS 60

Query: 289  ASPYHGFTIVNRLNMHNLVEPVNKDLEFQLHEPFLLYRNASLSIYSIWFYDKNDCHRIAK 468
            ASPYHGFTIVNRLNMHNLVEPVNKDLEFQLHEPFLLYRNASLSIYSIWFYDKNDCHRIAK
Sbjct: 61   ASPYHGFTIVNRLNMHNLVEPVNKDLEFQLHEPFLLYRNASLSIYSIWFYDKNDCHRIAK 120

Query: 469  LMADVVEEETRRSQQAARDKQSPNQANGCSDHRPIDILEMLSRAKDEYERNQMGDSNISS 648
            LMADVVEEETRRSQQAARDKQSP+QANGCSDHRPIDILEMLSRAKDEYERNQMGDSNISS
Sbjct: 121  LMADVVEEETRRSQQAARDKQSPSQANGCSDHRPIDILEMLSRAKDEYERNQMGDSNISS 180

Query: 649  PGLQPSTQISNLGSTETLEETPSGLQDKSALSGHKHLTVEELFGTSLPKEQPTVVGLESE 828
            PGLQPSTQ+SNLGSTETLEE PSG QDKSA SGHKHLTVEELFGTSLPKEQP VVGL+SE
Sbjct: 181  PGLQPSTQLSNLGSTETLEEMPSGSQDKSAPSGHKHLTVEELFGTSLPKEQPAVVGLDSE 240

Query: 829  EVEKLPGDDSQKXXXXXXXXXXXXXXXXXXXXNMGIRPAAHHSVQPEVTTPVLITPASIT 1008
            E+E+LPGD SQK                     +G+  AAHHSVQPE+TTPVLITPASIT
Sbjct: 241  EMERLPGDASQKEPNSFLPFPFEQLGGAPQSETLGVPSAAHHSVQPEITTPVLITPASIT 300

Query: 1009 QSSEKQAPSYAIPLHPVLSPTLPAEASTAQAPPSLPRSTTMMQAVKTTPRQRSPLSSQPV 1188
            QS+EK AP+Y IPL PVLSPTLPAEA TAQ PPSLPR++TMMQAVKTTPRQRSPL +QPV
Sbjct: 301  QSNEKHAPTYTIPLSPVLSPTLPAEAPTAQVPPSLPRNSTMMQAVKTTPRQRSPLLNQPV 360

Query: 1189 PEXXXXXXXXXXXPFRAPLNVTNTASTSLPSVDLLQKLRLTQQHDQIQTQSLGKGAVAPS 1368
            PE           PFRAPLNVTNTA TSLPSVDLLQKLRLT QHDQIQTQ LGKGA+  S
Sbjct: 361  PELSHASLIANQSPFRAPLNVTNTAGTSLPSVDLLQKLRLTPQHDQIQTQPLGKGAMVAS 420

Query: 1369 FSPAAGQLATPESFIEPPPKTAAAR--ASASLSNMVLAPLQSMQQNQDPEVFAQPKVLSS 1542
            FSPAAGQLATPESFIEPP KTAAAR  ASASLSNMVLAPLQSMQQNQDPEVF QPKVLSS
Sbjct: 421  FSPAAGQLATPESFIEPPSKTAAARVAASASLSNMVLAPLQSMQQNQDPEVFVQPKVLSS 480

Query: 1543 AIPVAGPXXXXXXXXXXXXXXXXPSVFQQTVTKSSDLERKASSP 1674
            AIPVAG                 PSVFQQTVT+SSDLERKASSP
Sbjct: 481  AIPVAGAPLVTATTTAVSSVLLAPSVFQQTVTRSSDLERKASSP 524


>ref|NP_689853.3| mRNA-decapping enzyme 1B [Homo sapiens].
          Length = 617

 Score =  198 bits (504), Expect = 1e-50
 Identities = 96/163 (58%), Positives = 122/163 (74%)
 Frame = +1

Query: 130 GQEMSLAALKQHDPYITSIADLTGQVALYTFCPKANQWEKTDIEGTLFVYRRSASPYHGF 309
           G+++SLAAL++HDPYI  I D+  QVALYTF  +AN+WEKTD+EGTLFVY RSASP HGF
Sbjct: 13  GRDISLAALQRHDPYINRIVDVASQVALYTFGHRANEWEKTDVEGTLFVYTRSASPKHGF 72

Query: 310 TIVNRLNMHNLVEPVNKDLEFQLHEPFLLYRNASLSIYSIWFYDKNDCHRIAKLMADVVE 489
           TI+NRL+M N  EP+ KDL+FQL +PFLLYRNA LSIY IWFYDK +C RIA+LM ++ +
Sbjct: 73  TIMNRLSMENRTEPITKDLDFQLQDPFLLYRNARLSIYGIWFYDKEECQRIAELMKNLTQ 132

Query: 490 EETRRSQQAARDKQSPNQANGCSDHRPIDILEMLSRAKDEYER 618
            E  ++ Q      SP   N   + + +DIL ML +AKDEY +
Sbjct: 133 YEQLKAHQGTGAGISPVILNS-GEGKEVDILRMLIKAKDEYTK 174


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.314    0.128    0.369 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 69,831,154
Number of extensions: 1939967
Number of successful extensions: 8102
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 7993
Number of HSP's successfully gapped: 2
Length of query: 575
Length of database: 18,297,164
Length adjustment: 108
Effective length of query: 467
Effective length of database: 14,737,052
Effective search space: 6882203284
Effective search space used: 6882203284
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 36 (18.5 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002623
         (1727 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_598522.3| mRNA-decapping enzyme 1A [Mus musculus].             812   0.0  
Alignment   gi|NP_001028551.2| mRNA-decapping enzyme 1B [Mus musculus].          197   3e-50

>ref|NP_598522.3| mRNA-decapping enzyme 1A [Mus musculus].
          Length = 602

 Score =  812 bits (2097), Expect(2) = 0.0
 Identities = 426/545 (78%), Positives = 453/545 (83%), Gaps = 3/545 (0%)
 Frame = +1

Query: 49   MALSCTRLRPR*RG*ALEFKMESLSRAGQEMSLAALKQHDPYITSIADLTGQVALYTFCP 228
            MALSC+ +RPR RG AL  KME LSRA QEMSLAALKQHDPYITSIADLTGQVALYTFCP
Sbjct: 1    MALSCSTVRPRRRGSALRSKMELLSRAEQEMSLAALKQHDPYITSIADLTGQVALYTFCP 60

Query: 229  KANQWEKTDIEGTLFVYRRSASPYHGFTIVNRLNMHNLVEPVNKDLEFQLHEPFLLYRNA 408
            KANQWEKTDIEGTLFVYRRSASPYHGFTIVNRLNMHNLVEPVNKDLEFQLHEPFLLYRNA
Sbjct: 61   KANQWEKTDIEGTLFVYRRSASPYHGFTIVNRLNMHNLVEPVNKDLEFQLHEPFLLYRNA 120

Query: 409  SLSIYSIWFYDKNDCHRIAKLMADVVEEETRRSQQAARDKQSPNQANGCSDHRPIDILEM 588
            SLSIYSIWFYDKNDCHRIAKLMADVVEEETRRSQQAARDKQSP+QANGCSD RPIDILEM
Sbjct: 121  SLSIYSIWFYDKNDCHRIAKLMADVVEEETRRSQQAARDKQSPSQANGCSDQRPIDILEM 180

Query: 589  LSRAKDEYERNQMGDSNISSPGLQPSTQISNLGSTETLEETPSGLQDKSALSGHKHLTVE 768
            LSRAKDEYERNQMG SNISSPGLQPSTQ+SNLGSTETLEETPSG QDKSA SGHKHLTVE
Sbjct: 181  LSRAKDEYERNQMGGSNISSPGLQPSTQLSNLGSTETLEETPSGSQDKSAPSGHKHLTVE 240

Query: 769  ELFGTSLPKEQPTVVGLESEEVEKLPGDDSQKXXXXXXXXXXXXXXXXXXXXNMGIRPAA 948
            ELFGTSLPKEQPT +GLESE+ +KL GD SQK                    N+GI  AA
Sbjct: 241  ELFGTSLPKEQPTAMGLESEDTDKLLGDASQKEPSSFLPFPFEQSGGAPQSENLGIHSAA 300

Query: 949  HHSVQPEVTTPVLITPASITQSSEKQAPSYAIPLHPVLSPTLPAEASTAQAPPSLPRSTT 1128
            HH+VQPEV+TPVLITPASI QS +K  PSY +PL PVLSPTLPAEA T Q  P LPR++T
Sbjct: 301  HHTVQPEVSTPVLITPASIAQSGDKHPPSYTLPLSPVLSPTLPAEAPTTQV-PHLPRNST 359

Query: 1129 MMQAVKTTPRQRSPLSSQPVPEXXXXXXXXXXXPFRAPLNVTNTASTSLPSVDLLQKLRL 1308
            M+QAVKTTPRQ+SPL +QPVPE           PFRAP+++ N A T+LPSVDLLQKLRL
Sbjct: 360  MIQAVKTTPRQKSPLLNQPVPELSHSSLVASQSPFRAPVSLANPAGTALPSVDLLQKLRL 419

Query: 1309 TQQHDQIQTQSLGKGAVAPSFSPAAGQLATPESFIEPPPKTAAARA--SASLSNMVLAP- 1479
            T QHDQIQ Q LGKG +APSFS AAGQLATPESFIEP  KTAAARA  SASLSNMVLAP 
Sbjct: 420  TPQHDQIQAQPLGKGTMAPSFSSAAGQLATPESFIEPSSKTAAARAAVSASLSNMVLAPT 479

Query: 1480 LQSMQQNQDPEVFAQPKVLSSAIPVAGPXXXXXXXXXXXXXXXXPSVFQQTVTKSSDLER 1659
            LQSMQQNQDPEVF+QPKVL SAIP+AG                 PSVFQQTV +++DLER
Sbjct: 480  LQSMQQNQDPEVFSQPKVLPSAIPIAGSPLVPATTTAVSSVLLSPSVFQQTVPRAADLER 539

Query: 1660 KASSP 1674
            KASSP
Sbjct: 540  KASSP 544



 Score = 29.6 bits (65), Expect(2) = 0.0
 Identities = 13/19 (68%), Positives = 16/19 (84%)
 Frame = +2

Query: 1661 KQAPLSPLTVGTSENQRKP 1717
            K +  SPLTVGT+E+QRKP
Sbjct: 540  KASSPSPLTVGTAESQRKP 558


>ref|NP_001028551.2| mRNA-decapping enzyme 1B [Mus musculus].
          Length = 578

 Score =  197 bits (500), Expect = 3e-50
 Identities = 109/226 (48%), Positives = 143/226 (63%), Gaps = 9/226 (3%)
 Frame = +1

Query: 130 GQEMSLAALKQHDPYITSIADLTGQVALYTFCPKANQWEKTDIEGTLFVYRRSASPYHGF 309
           G ++SLAAL++HDPYI+ I D+  QVALYTF  +AN+WEKT +EGTLFVY RSASP HGF
Sbjct: 13  GHDISLAALRRHDPYISRIVDVASQVALYTFGHRANEWEKTGVEGTLFVYTRSASPKHGF 72

Query: 310 TIVNRLNMHNLVEPVNKDLEFQLHEPFLLYRNASLSIYSIWFYDKNDCHRIAKLMADVVE 489
           TI+NRL+M N  EP+ KDL+FQL  PFLLYRN +LSIY IWFYDK +C RIAKLM ++ +
Sbjct: 73  TIMNRLSMENRTEPITKDLDFQLQNPFLLYRNGTLSIYGIWFYDKEECQRIAKLMKNLTQ 132

Query: 490 EETRRSQQAARDKQSPNQANGCSDHRPIDILEMLSRAKDEY-------ERNQMGDSN--I 642
            E  ++   A    SP   +   + + +DIL+ML++AKDEY       E  QM +S+   
Sbjct: 133 SEQLKACHGA--GSSPVTLSS-GEGQEVDILQMLTKAKDEYTKCKTCSEPKQMTNSSAIC 189

Query: 643 SSPGLQPSTQISNLGSTETLEETPSGLQDKSALSGHKHLTVEELFG 780
            +P L     +    S       PS   D       +HL++  LFG
Sbjct: 190 DNPKLIKPVPVRPSSSQRLQGPAPSKTSDPEP----QHLSLTALFG 231


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.314    0.128    0.369 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 59,260,532
Number of extensions: 1634200
Number of successful extensions: 6403
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 6330
Number of HSP's successfully gapped: 3
Length of query: 575
Length of database: 15,617,559
Length adjustment: 107
Effective length of query: 468
Effective length of database: 12,403,707
Effective search space: 5804934876
Effective search space used: 5804934876
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 36 (18.5 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002623
         (1727 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_003358514.1| PREDICTED: mRNA-decapping enzyme 1A isoform ...   914   0.0  
Alignment   gi|XP_003358515.1| PREDICTED: mRNA-decapping enzyme 1A isoform ...   821   0.0  
Alignment   gi|XP_003355657.1| PREDICTED: mRNA-decapping enzyme 1B-like [Su...   202   4e-52

>ref|XP_003358514.1| PREDICTED: mRNA-decapping enzyme 1A isoform 1 [Sus scrofa].
          Length = 580

 Score =  914 bits (2362), Expect = 0.0
 Identities = 472/522 (90%), Positives = 474/522 (90%)
 Frame = +1

Query: 109  MESLSRAGQEMSLAALKQHDPYITSIADLTGQVALYTFCPKANQWEKTDIEGTLFVYRRS 288
            MESLSRAGQEMSLAALKQHDPYITSIADLTGQVALYTFCPKANQWEKTDIEGTLFVYRRS
Sbjct: 1    MESLSRAGQEMSLAALKQHDPYITSIADLTGQVALYTFCPKANQWEKTDIEGTLFVYRRS 60

Query: 289  ASPYHGFTIVNRLNMHNLVEPVNKDLEFQLHEPFLLYRNASLSIYSIWFYDKNDCHRIAK 468
            ASPYHGFTIVNRLNMHNLVEPVNKDLEFQLHEPFLLYRNASLSIYSIWFYDKNDCHRIAK
Sbjct: 61   ASPYHGFTIVNRLNMHNLVEPVNKDLEFQLHEPFLLYRNASLSIYSIWFYDKNDCHRIAK 120

Query: 469  LMADVVEEETRRSQQAARDKQSPNQANGCSDHRPIDILEMLSRAKDEYERNQMGDSNISS 648
            LMADV+EEETRRSQQAARDKQSPNQANGCSDHRPIDILEMLSRAKDEYERNQMGDSNISS
Sbjct: 121  LMADVLEEETRRSQQAARDKQSPNQANGCSDHRPIDILEMLSRAKDEYERNQMGDSNISS 180

Query: 649  PGLQPSTQISNLGSTETLEETPSGLQDKSALSGHKHLTVEELFGTSLPKEQPTVVGLESE 828
            PGLQPSTQISNLGSTETLEETPSGLQDKSALSGHKHLTVEELFGTSLPKEQPTVVGLESE
Sbjct: 181  PGLQPSTQISNLGSTETLEETPSGLQDKSALSGHKHLTVEELFGTSLPKEQPTVVGLESE 240

Query: 829  EVEKLPGDDSQKXXXXXXXXXXXXXXXXXXXXNMGIRPAAHHSVQPEVTTPVLITPASIT 1008
            EVEKLPGD SQK                    NMGIRPAAHHSVQPEVTTPVLITPASIT
Sbjct: 241  EVEKLPGDASQKEPSSFLPFSFEPSGGGPQSENMGIRPAAHHSVQPEVTTPVLITPASIT 300

Query: 1009 QSSEKQAPSYAIPLHPVLSPTLPAEASTAQAPPSLPRSTTMMQAVKTTPRQRSPLSSQPV 1188
            QSSEKQAPSYAIPLHPVLSPTLPAEASTAQAPPSLPRSTTMMQAVKTTPRQRSPLSSQPV
Sbjct: 301  QSSEKQAPSYAIPLHPVLSPTLPAEASTAQAPPSLPRSTTMMQAVKTTPRQRSPLSSQPV 360

Query: 1189 PEXXXXXXXXXXXPFRAPLNVTNTASTSLPSVDLLQKLRLTQQHDQIQTQSLGKGAVAPS 1368
            PE           PFRAPLNVTNTASTSLPSVDLLQKLRLTQQHDQIQTQSLGKGAVAPS
Sbjct: 361  PELSQASLAASQSPFRAPLNVTNTASTSLPSVDLLQKLRLTQQHDQIQTQSLGKGAVAPS 420

Query: 1369 FSPAAGQLATPESFIEPPPKTAAARASASLSNMVLAPLQSMQQNQDPEVFAQPKVLSSAI 1548
            FSPAAGQLATPESFIEPPPKTAAARASASLSNMVLAPLQSMQQNQDPEVFAQPKVLSSAI
Sbjct: 421  FSPAAGQLATPESFIEPPPKTAAARASASLSNMVLAPLQSMQQNQDPEVFAQPKVLSSAI 480

Query: 1549 PVAGPXXXXXXXXXXXXXXXXPSVFQQTVTKSSDLERKASSP 1674
            PVAGP                PSVFQQTVT+SSDLERKASSP
Sbjct: 481  PVAGPALVTATTSAVSSVLLSPSVFQQTVTRSSDLERKASSP 522


>ref|XP_003358515.1| PREDICTED: mRNA-decapping enzyme 1A isoform 2 [Sus scrofa].
          Length = 542

 Score =  821 bits (2121), Expect = 0.0
 Identities = 434/522 (83%), Positives = 436/522 (83%)
 Frame = +1

Query: 109  MESLSRAGQEMSLAALKQHDPYITSIADLTGQVALYTFCPKANQWEKTDIEGTLFVYRRS 288
            MESLSRAGQEMSLAALKQHDPYITSIADLTGQVALYTFCPKANQWEKTDIEGTLFVYRRS
Sbjct: 1    MESLSRAGQEMSLAALKQHDPYITSIADLTGQVALYTFCPKANQWEKTDIEGTLFVYRRS 60

Query: 289  ASPYHGFTIVNRLNMHNLVEPVNKDLEFQLHEPFLLYRNASLSIYSIWFYDKNDCHRIAK 468
            ASPYHGFTIVNRLNMHNLVEPVNKDLEFQLHEPFLLYRNASLSIYSIWFYDKNDCHRIAK
Sbjct: 61   ASPYHGFTIVNRLNMHNLVEPVNKDLEFQLHEPFLLYRNASLSIYSIWFYDKNDCHRIAK 120

Query: 469  LMADVVEEETRRSQQAARDKQSPNQANGCSDHRPIDILEMLSRAKDEYERNQMGDSNISS 648
            LMADV+EEETRRSQQAARDKQSPNQANGCSDHRPIDILEMLSRAKDEYER          
Sbjct: 121  LMADVLEEETRRSQQAARDKQSPNQANGCSDHRPIDILEMLSRAKDEYER---------- 170

Query: 649  PGLQPSTQISNLGSTETLEETPSGLQDKSALSGHKHLTVEELFGTSLPKEQPTVVGLESE 828
                                        SALSGHKHLTVEELFGTSLPKEQPTVVGLESE
Sbjct: 171  ----------------------------SALSGHKHLTVEELFGTSLPKEQPTVVGLESE 202

Query: 829  EVEKLPGDDSQKXXXXXXXXXXXXXXXXXXXXNMGIRPAAHHSVQPEVTTPVLITPASIT 1008
            EVEKLPGD SQK                    NMGIRPAAHHSVQPEVTTPVLITPASIT
Sbjct: 203  EVEKLPGDASQKEPSSFLPFSFEPSGGGPQSENMGIRPAAHHSVQPEVTTPVLITPASIT 262

Query: 1009 QSSEKQAPSYAIPLHPVLSPTLPAEASTAQAPPSLPRSTTMMQAVKTTPRQRSPLSSQPV 1188
            QSSEKQAPSYAIPLHPVLSPTLPAEASTAQAPPSLPRSTTMMQAVKTTPRQRSPLSSQPV
Sbjct: 263  QSSEKQAPSYAIPLHPVLSPTLPAEASTAQAPPSLPRSTTMMQAVKTTPRQRSPLSSQPV 322

Query: 1189 PEXXXXXXXXXXXPFRAPLNVTNTASTSLPSVDLLQKLRLTQQHDQIQTQSLGKGAVAPS 1368
            PE           PFRAPLNVTNTASTSLPSVDLLQKLRLTQQHDQIQTQSLGKGAVAPS
Sbjct: 323  PELSQASLAASQSPFRAPLNVTNTASTSLPSVDLLQKLRLTQQHDQIQTQSLGKGAVAPS 382

Query: 1369 FSPAAGQLATPESFIEPPPKTAAARASASLSNMVLAPLQSMQQNQDPEVFAQPKVLSSAI 1548
            FSPAAGQLATPESFIEPPPKTAAARASASLSNMVLAPLQSMQQNQDPEVFAQPKVLSSAI
Sbjct: 383  FSPAAGQLATPESFIEPPPKTAAARASASLSNMVLAPLQSMQQNQDPEVFAQPKVLSSAI 442

Query: 1549 PVAGPXXXXXXXXXXXXXXXXPSVFQQTVTKSSDLERKASSP 1674
            PVAGP                PSVFQQTVT+SSDLERKASSP
Sbjct: 443  PVAGPALVTATTSAVSSVLLSPSVFQQTVTRSSDLERKASSP 484


>ref|XP_003355657.1| PREDICTED: mRNA-decapping enzyme 1B-like [Sus scrofa].
          Length = 559

 Score =  202 bits (515), Expect = 4e-52
 Identities = 148/446 (33%), Positives = 215/446 (48%), Gaps = 22/446 (4%)
 Frame = +1

Query: 130  GQEMSLAALKQHDPYITSIADLTGQVALYTFCPKANQWEKTDIEGTLFVYRRSASPYHGF 309
            G+++SLAAL++HDPYI+ I D+  QVALYTF  +AN+WEKTD+EGTLFVY RSASP HGF
Sbjct: 12   GRDISLAALRRHDPYISHIVDVASQVALYTFGHRANEWEKTDVEGTLFVYTRSASPKHGF 71

Query: 310  TIVNRLNMHNLVEPVNKDLEFQLHEPFLLYRNASLSIYSIWFYDKNDCHRIAKLMADVVE 489
            TI+NRL+M N  EP+ KDL+F L +PFLLYRNA LSIY IWFYDK +C RIA+LM ++ +
Sbjct: 72   TIMNRLSMENRTEPITKDLDFLLQDPFLLYRNARLSIYGIWFYDKEECQRIAELMKNLTQ 131

Query: 490  EETRRSQQ-----AARDKQSPNQANGCSDHRPIDILEMLSRAKDEY-------ERNQMGD 633
             E  ++       AA     P    G  + R +DIL ML++A+DEY       E  Q+  
Sbjct: 132  YEQLKAHHGTGAGAAARAGGPTMTLGSGESREVDILRMLTKARDEYTKCKTCSEPKQITS 191

Query: 634  SN--ISSPGLQPSTQISNLGSTETLEETPSGLQDKSALSGHKHLTVEELFGTSLPKEQPT 807
            S+   ++P L     +   G+ +     PS   D       +HL++  LFG     +Q  
Sbjct: 192  SSAIYNNPNLIKPIPVKPSGNRQQRIPQPSQTLDPEP----QHLSLMALFG-----KQDK 242

Query: 808  VVGLESEEVEKLPGDDSQKXXXXXXXXXXXXXXXXXXXXNMGIRPAAHHSVQPEVTTPVL 987
             V  ++    + P    Q+                    +M       HS   E      
Sbjct: 243  AVCQQTVGPPQTPHQQLQQ-------EKGVQQGQQGVVHSMSYEDPRRHSPLVEKQ---- 291

Query: 988  ITPASITQSSEKQAPSYAIPLHPVLSPTLPAEASTAQAPP-------SLPRSTTMMQAVK 1146
            + PA I +   + A  + +   P   P    E+ T  A P         PR+  +++ ++
Sbjct: 292  LCPA-IQKLMVRSADLHPLSELPENQPCRDGESCTGAAQPGSPCSTLGAPRTQNLLEKLQ 350

Query: 1147 TTPRQRSPLS-SQPVPEXXXXXXXXXXXPFRAPLNVTNTASTSLPSVDLLQKLRLTQQHD 1323
            ++PR  S    + P P            P      V    S+ +   +LL+KL+  QQ  
Sbjct: 351  SSPRTASRCDPAAPAPSSSATTPAAPAPPVPGSQAV---GSSEVSPRELLRKLQGAQQEP 407

Query: 1324 QIQTQSLGKGAVAPSFSPAAGQLATP 1401
             + +    + A+A  F  A      P
Sbjct: 408  PVPS----RPALAAKFPLATSSARAP 429


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.314    0.128    0.369 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 43,957,471
Number of extensions: 1232407
Number of successful extensions: 5098
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 5060
Number of HSP's successfully gapped: 4
Length of query: 575
Length of database: 11,343,932
Length adjustment: 104
Effective length of query: 471
Effective length of database: 8,754,644
Effective search space: 4123437324
Effective search space used: 4123437324
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 35 (18.1 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002623
         (1727 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr13                                                        1441   0.0  

>Sscrofa_Chr13 
||          Length = 218635234

 Score = 1441 bits (727), Expect = 0.0
 Identities = 746/755 (98%)
 Strand = Plus / Minus

                                                                            
Query: 731      agtctgctctttccggacacaaacatctgacggtggaagaattatttggaacctctttac 790
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38472118 agtctgctctttccggacacaaacatctgacggtggaagaattatttggaacctctttac 38472059

                                                                            
Query: 791      caaaggaacagccaacagttgtgggtctggagtcagaagaagtggagaaactaccaggag 850
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38472058 caaaggaacagccaacagttgtgggtctggagtcagaagaagtggagaaactaccaggag 38471999

                                                                            
Query: 851      atgactcccagaaagagcccagctcattcctaccattttcctttgagccttcaggagggg 910
                ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38471998 atgcctcccagaaagagcccagctcattcctaccattttcctttgagccttcaggagggg 38471939

                                                                            
Query: 911      gccctcagtcagaaaacatgggcatccgtcctgctgcccaccactcagtgcaacctgaag 970
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38471938 gccctcagtcagaaaacatgggcatccgtcctgctgcccaccactcagtgcaacctgaag 38471879

                                                                            
Query: 971      tcaccaccccggtgctaatcactcctgcctccatcacacagtctagtgaaaagcaggccc 1030
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38471878 tcaccaccccggtgctaatcactcctgcctccatcacacagtctagtgaaaagcaggccc 38471819

                                                                            
Query: 1031     caagctatgcgatcccgttgcaccctgtgctcagtcccactctaccagcagaagcttcta 1090
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38471818 caagctatgcgatcccgttgcaccctgtgctcagtcccactctaccagcagaagcttcta 38471759

                                                                            
Query: 1091     ctgcacaggctcctcccagcttaccccgaagcaccaccatgatgcaggcagtgaagacca 1150
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38471758 ctgcacaggctcctcccagcttaccccgaagcaccaccatgatgcaggcagtgaagacca 38471699

                                                                            
Query: 1151     cgcctagacaaaggtctccactctcgagtcagccagtccctgagctgagccaggccagtc 1210
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38471698 cgcctagacaaaggtctccactctcgagtcagccagtccctgagctgagccaggccagtc 38471639

                                                                            
Query: 1211     tggctgccagccagagcccattcagggccccactgaacgtgacaaacacagctagtacat 1270
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38471638 tggctgccagccagagcccattcagggccccactgaacgtgacaaacacagctagtacat 38471579

                                                                            
Query: 1271     ccctcccaagtgttgatcttctccagaaactcaggttgacccaacagcatgaccaaatac 1330
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38471578 ccctcccaagtgttgatcttctccagaaactcaggttgacccaacagcatgaccaaatac 38471519

                                                                            
Query: 1331     agacacagtcacttgggaaaggtgcagtggcacccagcttttctccagcagctggccagc 1390
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38471518 agacacagtcacttgggaaaggtgcagtggcacccagcttttctccagcagctggccagc 38471459

                                                                            
Query: 1391     tggccacacctgagagcttcatagagnnnnnnnntaaaacagcagcagcaagagcctcag 1450
                ||||||||||||||||||||||||||        ||||||||||||||||||||||||||
Sbjct: 38471458 tggccacacctgagagcttcatagagcctccccctaaaacagcagcagcaagagcctcag 38471399

                                                   
Query: 1451     cctccctcagcaacatggtgcttgctccccttcag 1485
                |||||||||||||||||||||||||||||||||||
Sbjct: 38471398 cctccctcagcaacatggtgcttgctccccttcag 38471364



 Score =  484 bits (244), Expect = e-134
 Identities = 244/244 (100%)
 Strand = Plus / Minus

                                                                            
Query: 1        agagacggaagttaaggacgctgacgcagctgggggaactttgcctcgatggcactttcc 60
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38525387 agagacggaagttaaggacgctgacgcagctgggggaactttgcctcgatggcactttcc 38525328

                                                                            
Query: 61       tgtacgcgactccgcccccgctaaaggggctaggctctggaattcaagatggagtcgctg 120
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38525327 tgtacgcgactccgcccccgctaaaggggctaggctctggaattcaagatggagtcgctg 38525268

                                                                            
Query: 121      agtcgagctgggcaggagatgagcctagcggccctgaagcaacacgacccctacatcacc 180
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38525267 agtcgagctgggcaggagatgagcctagcggccctgaagcaacacgacccctacatcacc 38525208

                                                                            
Query: 181      agcatcgcagatctcacgggccaagtcgcgttgtacaccttctgccccaaggccaaccag 240
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38525207 agcatcgcagatctcacgggccaagtcgcgttgtacaccttctgccccaaggccaaccag 38525148

                    
Query: 241      tggg 244
                ||||
Sbjct: 38525147 tggg 38525144



 Score =  295 bits (149), Expect = 4e-77
 Identities = 172/177 (97%), Gaps = 2/177 (1%)
 Strand = Plus / Minus

                                                                            
Query: 1551     ggtggcaggccccgcactggttactgcaacaacctcagcagtgtcctcagtcctgctctc 1610
                |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 38466722 ggtggcaggccccgcactggttactgcaacaacctcagcagtgtcctcggtcctgctctc 38466663

                                                                            
Query: 1611     tccaagtgttttccagcagacagtcacaaagtcctcagacctggagaggaaagcaagctc 1670
                ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 38466662 tccaagtgttttccagcagacagtcacaaggtcctcagacctggagaggaaagcaagctc 38466603

                                                                         
Query: 1671     ccctttctcctctcactgttggaacatcagaaaatcaaagaaagcctttccattatc 1727
                ||| ||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct: 38466602 ccc-ttctcctctcactgttggaacatcagaaaatcagagaaagcc-ttccattatc 38466548



 Score =  268 bits (135), Expect = 9e-69
 Identities = 138/139 (99%)
 Strand = Plus / Minus

                                                                            
Query: 480      cgtggtagaagaagagacacggcggtcccagcaagcagctcgggataagcagagtcccaa 539
                |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38483464 cgtgttagaagaagagacacggcggtcccagcaagcagctcgggataagcagagtcccaa 38483405

                                                                            
Query: 540      ccaggccaatggctgcagtgaccacaggcccatcgacatcctggagatgctaagcagagc 599
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38483404 ccaggccaatggctgcagtgaccacaggcccatcgacatcctggagatgctaagcagagc 38483345

                                   
Query: 600      caaggatgagtatgagagg 618
                |||||||||||||||||||
Sbjct: 38483344 caaggatgagtatgagagg 38483326



 Score =  260 bits (131), Expect = 2e-66
 Identities = 131/131 (100%)
 Strand = Plus / Minus

                                                                            
Query: 282      aaggtcagcttcaccttaccatggttttaccattgtgaatcgactgaatatgcacaattt 341
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38518735 aaggtcagcttcaccttaccatggttttaccattgtgaatcgactgaatatgcacaattt 38518676

                                                                            
Query: 342      agttgaaccagtgaataaagatttggaatttcagctccatgaaccatttcttctatatag 401
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38518675 agttgaaccagtgaataaagatttggaatttcagctccatgaaccatttcttctatatag 38518616

                           
Query: 402      aaatgcaagct 412
                |||||||||||
Sbjct: 38518615 aaatgcaagct 38518605



 Score =  228 bits (115), Expect = 8e-57
 Identities = 115/115 (100%)
 Strand = Plus / Minus

                                                                            
Query: 618      gaatcagatgggtgactcaaatatctccagccctgggttacagccaagcactcagatctc 677
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38481633 gaatcagatgggtgactcaaatatctccagccctgggttacagccaagcactcagatctc 38481574

                                                                       
Query: 678      caatctgggaagcactgagactctggaagagacaccatctgggttacaagataag 732
                |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38481573 caatctgggaagcactgagactctggaagagacaccatctgggttacaagataag 38481519



 Score =  141 bits (71), Expect = 1e-30
 Identities = 71/71 (100%)
 Strand = Plus / Minus

                                                                            
Query: 1483     cagtctatgcagcaaaaccaggatcctgaagtttttgcccagcctaaggtgttatccagt 1542
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38469266 cagtctatgcagcaaaaccaggatcctgaagtttttgcccagcctaaggtgttatccagt 38469207

                           
Query: 1543     gccatcccggt 1553
                |||||||||||
Sbjct: 38469206 gccatcccggt 38469196



 Score =  133 bits (67), Expect = 4e-28
 Identities = 67/67 (100%)
 Strand = Plus / Minus

                                                                            
Query: 413      tgtcaatatacagtatctggttttatgacaagaatgactgtcaccggatagccaaactca 472
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38489768 tgtcaatatacagtatctggttttatgacaagaatgactgtcaccggatagccaaactca 38489709

                       
Query: 473      tggccga 479
                |||||||
Sbjct: 38489708 tggccga 38489702



 Score = 91.7 bits (46), Expect = 1e-15
 Identities = 49/50 (98%)
 Strand = Plus / Minus

                                                                  
Query: 243      ggagaagactgatatagaagggaccttatttgtatatcgaaggtcagctt 292
                |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 38521678 ggagaagactgatatagaagggaccttatttgtatatcgaaggtaagctt 38521629


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 51,408,464
Number of extensions: 330
Number of successful extensions: 330
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 329
Number of HSP's successfully gapped: 10
Length of query: 1727
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1705
Effective length of database: 2,808,408,574
Effective search space: 4788336618670
Effective search space used: 4788336618670
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)