Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002623
(1727 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001095800.1| mRNA-decapping enzyme 1A [Bos taurus]. 850 0.0
Alignment gi|NP_001029639.1| mRNA-decapping enzyme 1B [Bos taurus]. 216 5e-56
>ref|NP_001095800.1| mRNA-decapping enzyme 1A [Bos taurus].
Length = 579
Score = 850 bits (2195), Expect = 0.0
Identities = 444/522 (85%), Positives = 451/522 (86%)
Frame = +1
Query: 109 MESLSRAGQEMSLAALKQHDPYITSIADLTGQVALYTFCPKANQWEKTDIEGTLFVYRRS 288
MESLSRAGQEMSLAALKQHDPYITSIADLTGQVALYTFCPKANQWEKTDIEGTLFVYRRS
Sbjct: 1 MESLSRAGQEMSLAALKQHDPYITSIADLTGQVALYTFCPKANQWEKTDIEGTLFVYRRS 60
Query: 289 ASPYHGFTIVNRLNMHNLVEPVNKDLEFQLHEPFLLYRNASLSIYSIWFYDKNDCHRIAK 468
ASPYHGFTIVNRLNMHNLVEPVNKDLEFQLHEPFLLYRNASLSIYSIWFYDKNDCHRIAK
Sbjct: 61 ASPYHGFTIVNRLNMHNLVEPVNKDLEFQLHEPFLLYRNASLSIYSIWFYDKNDCHRIAK 120
Query: 469 LMADVVEEETRRSQQAARDKQSPNQANGCSDHRPIDILEMLSRAKDEYERNQMGDSNISS 648
LMADVVEEETRRSQQAARDKQSP+QANGCSDHRPIDILEMLSRAKDEYERNQMGDSNISS
Sbjct: 121 LMADVVEEETRRSQQAARDKQSPSQANGCSDHRPIDILEMLSRAKDEYERNQMGDSNISS 180
Query: 649 PGLQPSTQISNLGSTETLEETPSGLQDKSALSGHKHLTVEELFGTSLPKEQPTVVGLESE 828
PGLQPSTQISNLGSTETLEETPSGLQDKSA SGHKHLTVEELFGTSL KEQP VVGL+SE
Sbjct: 181 PGLQPSTQISNLGSTETLEETPSGLQDKSAPSGHKHLTVEELFGTSLSKEQPAVVGLDSE 240
Query: 829 EVEKLPGDDSQKXXXXXXXXXXXXXXXXXXXXNMGIRPAAHHSVQPEVTTPVLITPASIT 1008
EVEKLPGD SQK N+G+ PAAH SVQPEVTT VLITPASIT
Sbjct: 241 EVEKLPGDASQK-EPNSFLPFSFEPGGAPQSENLGVHPAAHPSVQPEVTTLVLITPASIT 299
Query: 1009 QSSEKQAPSYAIPLHPVLSPTLPAEASTAQAPPSLPRSTTMMQAVKTTPRQRSPLSSQPV 1188
QSSEKQAPSYAIPLH VLSP+LPAEAST QAPPSLPR TTMMQ VKT PRQRSPL SQPV
Sbjct: 300 QSSEKQAPSYAIPLHSVLSPSLPAEASTGQAPPSLPRKTTMMQTVKTAPRQRSPLLSQPV 359
Query: 1189 PEXXXXXXXXXXXPFRAPLNVTNTASTSLPSVDLLQKLRLTQQHDQIQTQSLGKGAVAPS 1368
PE PFRAPL+VTNT S SLPSVDLLQKLRLT QHDQIQ QSLGKGA APS
Sbjct: 360 PELSHASLTASQSPFRAPLSVTNTTSPSLPSVDLLQKLRLTPQHDQIQPQSLGKGAAAPS 419
Query: 1369 FSPAAGQLATPESFIEPPPKTAAARASASLSNMVLAPLQSMQQNQDPEVFAQPKVLSSAI 1548
FSPAAGQLATPESFIEP PK AARA ASLSNMVLAPLQSMQQNQDPEVFAQPKVLSSAI
Sbjct: 420 FSPAAGQLATPESFIEPSPKATAARAPASLSNMVLAPLQSMQQNQDPEVFAQPKVLSSAI 479
Query: 1549 PVAGPXXXXXXXXXXXXXXXXPSVFQQTVTKSSDLERKASSP 1674
PVA PSVFQQTVT+SSDLERKASSP
Sbjct: 480 PVASSPLVPATTSAAPSVLLSPSVFQQTVTRSSDLERKASSP 521
>ref|NP_001029639.1| mRNA-decapping enzyme 1B [Bos taurus].
Length = 581
Score = 216 bits (550), Expect = 5e-56
Identities = 168/508 (33%), Positives = 240/508 (47%), Gaps = 42/508 (8%)
Frame = +1
Query: 130 GQEMSLAALKQHDPYITSIADLTGQVALYTFCPKANQWEKTDIEGTLFVYRRSASPYHGF 309
G+++SLAAL++HDPYI+ I D+ QVALYTF +AN+WEKTD+EGTLFVY RSASP HGF
Sbjct: 11 GRDISLAALRRHDPYISRIVDVASQVALYTFGHRANEWEKTDVEGTLFVYSRSASPKHGF 70
Query: 310 TIVNRLNMHNLVEPVNKDLEFQLHEPFLLYRNASLSIYSIWFYDKNDCHRIAKLMADVVE 489
TI+NRL+M N EP+ KDL+F L +PFLLYRNA LSIY IWFYDK +C RIA+LM ++ +
Sbjct: 71 TIMNRLSMENRTEPITKDLDFLLQDPFLLYRNARLSIYGIWFYDKEECQRIAELMKNLTQ 130
Query: 490 EETRRSQQAARDKQSPNQANGCSDHRPIDILEMLSRAKDEY-------ERNQMGDSNI-- 642
E ++ SP + G + + DIL ML++AKDEY E Q+ S+
Sbjct: 131 YEQLKAHHGTGAGASP-VSLGSGEGKEADILRMLTKAKDEYTKCKTCSEPKQISSSSAIH 189
Query: 643 SSPGLQPSTQISNLGSTETLEETPSGLQDKSALSGHKHLTVEELFG--TSLPKEQ----P 804
+P L + GS + P D +HL++ LFG P ++ P
Sbjct: 190 DNPNLIKPIPVKPSGSRQQRGPRPGQTSDPEP----QHLSLTALFGKQDKAPCQEATGPP 245
Query: 805 TVVGLESEEVEKLP---------GDDSQKXXXXXXXXXXXXXXXXXXXXNMGIRPAAHHS 957
+ L+ ++ EK P + + +M ++P A
Sbjct: 246 QTLPLQQQQPEKFPMRQGVVRSLSYEEPRRPSPPVDKQLCPAIQKLMVRSMDLQPLAELP 305
Query: 958 VQPEVTTPVLITPASITQSSEKQAPSYAIPLHPVL-------------SPTLPAEASTAQ 1098
T + A Q+ ++ + A P L P PA AS+A
Sbjct: 306 ESRPCTDALRAACAGPAQTGSPRSHALAAPGTQKLLQVQSIPGAENRCEPGAPAPASSAT 365
Query: 1099 APPSLPRSTTMMQAV-KTTPRQRSPLSSQPVPEXXXXXXXXXXXPFRAPLNVTNTASTSL 1275
P SL + T + A+ TP R+ +P P P P + T +
Sbjct: 366 TPVSLAQPTRLSSALPPQTPGPRA--LPRPAP------------PGPGPGHQPVTGPGEV 411
Query: 1276 PSVDLLQKLRLTQQHDQIQTQSLGKGAVAPSFSPA--AGQLATP-ESFIEPPPKT-AAAR 1443
+LL++L+ QQ Q+ G+ A+A F A + + P E + +PPP T A
Sbjct: 412 SPRELLRRLQAVQQEQQLPAP--GRPALAAKFPTATLSTRARNPLEPWRDPPPSTEQPAP 469
Query: 1444 ASASLSNMVLAPLQSMQQNQDPEVFAQP 1527
LS + + P VFAQP
Sbjct: 470 LLQVLSPQRIPAAATPPPLMSPLVFAQP 497
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.314 0.128 0.369
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 68,194,281
Number of extensions: 1916219
Number of successful extensions: 7655
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 7568
Number of HSP's successfully gapped: 2
Length of query: 575
Length of database: 17,681,374
Length adjustment: 108
Effective length of query: 467
Effective length of database: 14,107,870
Effective search space: 6588375290
Effective search space used: 6588375290
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002623
(1727 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_849483.1| PREDICTED: similar to decapping enzyme isoform ... 841 0.0
Alignment gi|XP_534931.2| PREDICTED: similar to decapping enzyme Dcp1b [C... 206 4e-53
Alignment gi|XP_858819.1| PREDICTED: similar to MAD homolog 4 interacting... 102 1e-21
>ref|XP_849483.1| PREDICTED: similar to decapping enzyme isoform 1 [Canis familiaris].
Length = 554
Score = 841 bits (2173), Expect = 0.0
Identities = 434/537 (80%), Positives = 451/537 (83%)
Frame = +1
Query: 109 MESLSRAGQEMSLAALKQHDPYITSIADLTGQVALYTFCPKANQWEKTDIEGTLFVYRRS 288
MESLSRAGQEMSLAALKQHDPYITSIADLTGQVALYTFCPKANQWEKTDIEGTLFVYRRS
Sbjct: 1 MESLSRAGQEMSLAALKQHDPYITSIADLTGQVALYTFCPKANQWEKTDIEGTLFVYRRS 60
Query: 289 ASPYHGFTIVNRLNMHNLVEPVNKDLEFQLHEPFLLYRNASLSIYSIWFYDKNDCHRIAK 468
ASPYHGFTIVNRLNMHNLVEPVNKDLEFQLHEPFLLYRNASLSIYSIWFYDKNDCHRIAK
Sbjct: 61 ASPYHGFTIVNRLNMHNLVEPVNKDLEFQLHEPFLLYRNASLSIYSIWFYDKNDCHRIAK 120
Query: 469 LMADVVEEETRRSQQAARDKQSPNQANGCSDHRPIDILEMLSRAKDEYERNQMGDSNISS 648
LMADVVEEETRRSQQAARDKQSP+QANGCSDHRPIDILEMLSRAKDEYERNQMGDSNISS
Sbjct: 121 LMADVVEEETRRSQQAARDKQSPSQANGCSDHRPIDILEMLSRAKDEYERNQMGDSNISS 180
Query: 649 PGLQPSTQISNLGSTETLEETPSGLQDKSALSGHKHLTVEELFGTSLPKEQPTVVGLESE 828
PGLQPSTQ+SNLGSTETLEE PSG QDKSA SGHKHLTVEELFGTSLPKEQP V+GL+SE
Sbjct: 181 PGLQPSTQLSNLGSTETLEEMPSGSQDKSAPSGHKHLTVEELFGTSLPKEQPAVMGLDSE 240
Query: 829 EVEKLPGDDSQKXXXXXXXXXXXXXXXXXXXXNMGIRPAAHHSVQPEVTTPVLITPASIT 1008
EVEKLPGD SQK N+G+RPAAHH V PEV PVLITPASIT
Sbjct: 241 EVEKLPGDASQKESSSLLPFSFEQSGGVPPSENLGVRPAAHHPVPPEVPAPVLITPASIT 300
Query: 1009 QSSEKQAPSYAIPLHPVLSPTLPAEASTAQAPPSLPRSTTMMQAVKTTPRQRSPLSSQPV 1188
QS EKQAP YA+PL PVLSPTLPA+A TAQ PPSLPR+ T+MQAVKTTPRQRSPL +QPV
Sbjct: 301 QSGEKQAPGYAVPLRPVLSPTLPADAPTAQVPPSLPRNATIMQAVKTTPRQRSPLLTQPV 360
Query: 1189 PEXXXXXXXXXXXPFRAPLNVTNTASTSLPSVDLLQKLRLTQQHDQIQTQSLGKGAVAPS 1368
PE PFRAPL+VTNTA TSLPSVDLLQKLRLT QHDQIQTQSLGKGA+APS
Sbjct: 361 PELSHTNLTATQSPFRAPLSVTNTAGTSLPSVDLLQKLRLTPQHDQIQTQSLGKGALAPS 420
Query: 1369 FSPAAGQLATPESFIEPPPKTAAARASASLSNMVLAPLQSMQQNQDPEVFAQPKVLSSAI 1548
FSPAAGQLATPESFIEPPPKTAAARASASLSNMVLAPLQSMQQNQDP+VFAQPKVLSSA
Sbjct: 421 FSPAAGQLATPESFIEPPPKTAAARASASLSNMVLAPLQSMQQNQDPDVFAQPKVLSSA- 479
Query: 1549 PVAGPXXXXXXXXXXXXXXXXPSVFQQTVTKSSDLERKASSPFSSHCWNIRKSKKAF 1719
P P F K K+ PFS+ CWNIRKS+KAF
Sbjct: 480 SCHRPHTGYCNNHGSVFSPAVPECFPTDSHKVHRPREKSKRPFSTDCWNIRKSEKAF 536
>ref|XP_534931.2| PREDICTED: similar to decapping enzyme Dcp1b [Canis familiaris].
Length = 612
Score = 206 bits (525), Expect = 4e-53
Identities = 178/532 (33%), Positives = 243/532 (45%), Gaps = 66/532 (12%)
Frame = +1
Query: 130 GQEMSLAALKQHDPYITSIADLTGQVALYTFCPKANQWEKTDIEGTLFVYRRSASPYHGF 309
G+++SLAAL++HDPYI I D+ QVALYTF +AN+WEKTD+EGTLFVY RSASP HGF
Sbjct: 13 GRDISLAALQRHDPYINRIVDVASQVALYTFGHRANEWEKTDVEGTLFVYTRSASPKHGF 72
Query: 310 TIVNRLNMHNLVEPVNKDLEFQLHEPFLLYRNASLSIYSIWFYDKNDCHRIAKLMADVVE 489
TI+NRL+M N EP+ KDL+FQL +PFLLYRNA LSIY IWFYDK +C RIA+LM ++ +
Sbjct: 73 TIMNRLSMENRTEPITKDLDFQLQDPFLLYRNARLSIYGIWFYDKEECQRIAELMKNLTQ 132
Query: 490 EETRRSQQAARDKQSPNQANGCSDHRPIDILEMLSRAKDEY-------ERNQMGDSN--I 642
E ++ Q SP N + + +DIL ML++AKDEY E Q+ S+
Sbjct: 133 YEQLKAHQGTGAGNSPMILNS-GEGKEVDILRMLTKAKDEYTKCKTCSEPKQITSSSAIY 191
Query: 643 SSPGLQPSTQISNLGSTETLEETPSGLQDKSALSGHKHLTVEELFGTS------------ 786
+P L + + + P+ D +HL++ LFG
Sbjct: 192 DNPNLIKPIPVKPSENQQQRVPRPNQTLDSEC----QHLSLTALFGKQDKSPCQEAVGSP 247
Query: 787 ----------LPKEQPTVVGLESEEVEK-LPGDDSQ--KXXXXXXXXXXXXXXXXXXXXN 927
LP Q V L EE + P + Q N
Sbjct: 248 QTIHQQQQQPLPMRQGVVRSLSYEEPRRHSPPSEKQLCPAIQKLMVRSADLHPLSELPEN 307
Query: 928 MGIRPAAHHS--------VQP----EVTTPVLITPASITQSSEKQAPSYAIPLHPVLSPT 1071
R + HS VQP V T + S TQS ++ S P + P+
Sbjct: 308 RPCRNGSTHSAGEVFLGPVQPGSPHSVGTSQHVQSTSRTQSLLEKLQSAPRPANK-YDPS 366
Query: 1072 LPAEASTAQAPPSLPRSTTMMQAVKTTP-------RQRSPLSSQPVPEXXXXXXXXXXXP 1230
PA AS+ A PSL STT+ A P Q + P+ P
Sbjct: 367 TPAPASS--AAPSL--STTVPTAAPGAPVKGLAAQAQVGYFNGSLTPQTLGHQTYGKEQP 422
Query: 1231 FR----APLNVTNTASTSLPS-VDLLQKLRLTQQHDQIQTQSLGKGAVAPSFSPAAGQLA 1395
PL+ T+S+ + S +LL+KL++ QQ Q+ + + A+A F
Sbjct: 423 THPRPTLPLSGNQTSSSGVISPQELLKKLQIVQQEQQLHASN--RPALAAKFPVVTQSSR 480
Query: 1396 TP---ESFIEPPPKTAAARASASLSN-----MVLAPLQSMQQNQDPEVFAQP 1527
T ES+++ P T ++ LAP M P VF QP
Sbjct: 481 TGKALESWMDKTPSTEKQTPLFQATSPPHVPATLAPSLLM----SPMVFTQP 528
>ref|XP_858819.1| PREDICTED: similar to MAD homolog 4 interacting transcription
coactivator 1 isoform 2 [Canis familiaris].
Length = 57
Score = 102 bits (254), Expect = 1e-21
Identities = 48/48 (100%), Positives = 48/48 (100%)
Frame = +1
Query: 139 MSLAALKQHDPYITSIADLTGQVALYTFCPKANQWEKTDIEGTLFVYR 282
MSLAALKQHDPYITSIADLTGQVALYTFCPKANQWEKTDIEGTLFVYR
Sbjct: 1 MSLAALKQHDPYITSIADLTGQVALYTFCPKANQWEKTDIEGTLFVYR 48
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.314 0.128 0.369
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 70,994,249
Number of extensions: 1959407
Number of successful extensions: 8065
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 8000
Number of HSP's successfully gapped: 3
Length of query: 575
Length of database: 18,874,504
Length adjustment: 108
Effective length of query: 467
Effective length of database: 15,274,216
Effective search space: 7133058872
Effective search space used: 7133058872
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002623
(1727 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_060873.4| mRNA-decapping enzyme 1A [Homo sapiens]. 845 0.0
Alignment gi|NP_689853.3| mRNA-decapping enzyme 1B [Homo sapiens]. 198 1e-50
>ref|NP_060873.4| mRNA-decapping enzyme 1A [Homo sapiens].
Length = 582
Score = 845 bits (2184), Expect = 0.0
Identities = 437/524 (83%), Positives = 453/524 (86%), Gaps = 2/524 (0%)
Frame = +1
Query: 109 MESLSRAGQEMSLAALKQHDPYITSIADLTGQVALYTFCPKANQWEKTDIEGTLFVYRRS 288
ME+LSRAGQEMSLAALKQHDPYITSIADLTGQVALYTFCPKANQWEKTDIEGTLFVYRRS
Sbjct: 1 MEALSRAGQEMSLAALKQHDPYITSIADLTGQVALYTFCPKANQWEKTDIEGTLFVYRRS 60
Query: 289 ASPYHGFTIVNRLNMHNLVEPVNKDLEFQLHEPFLLYRNASLSIYSIWFYDKNDCHRIAK 468
ASPYHGFTIVNRLNMHNLVEPVNKDLEFQLHEPFLLYRNASLSIYSIWFYDKNDCHRIAK
Sbjct: 61 ASPYHGFTIVNRLNMHNLVEPVNKDLEFQLHEPFLLYRNASLSIYSIWFYDKNDCHRIAK 120
Query: 469 LMADVVEEETRRSQQAARDKQSPNQANGCSDHRPIDILEMLSRAKDEYERNQMGDSNISS 648
LMADVVEEETRRSQQAARDKQSP+QANGCSDHRPIDILEMLSRAKDEYERNQMGDSNISS
Sbjct: 121 LMADVVEEETRRSQQAARDKQSPSQANGCSDHRPIDILEMLSRAKDEYERNQMGDSNISS 180
Query: 649 PGLQPSTQISNLGSTETLEETPSGLQDKSALSGHKHLTVEELFGTSLPKEQPTVVGLESE 828
PGLQPSTQ+SNLGSTETLEE PSG QDKSA SGHKHLTVEELFGTSLPKEQP VVGL+SE
Sbjct: 181 PGLQPSTQLSNLGSTETLEEMPSGSQDKSAPSGHKHLTVEELFGTSLPKEQPAVVGLDSE 240
Query: 829 EVEKLPGDDSQKXXXXXXXXXXXXXXXXXXXXNMGIRPAAHHSVQPEVTTPVLITPASIT 1008
E+E+LPGD SQK +G+ AAHHSVQPE+TTPVLITPASIT
Sbjct: 241 EMERLPGDASQKEPNSFLPFPFEQLGGAPQSETLGVPSAAHHSVQPEITTPVLITPASIT 300
Query: 1009 QSSEKQAPSYAIPLHPVLSPTLPAEASTAQAPPSLPRSTTMMQAVKTTPRQRSPLSSQPV 1188
QS+EK AP+Y IPL PVLSPTLPAEA TAQ PPSLPR++TMMQAVKTTPRQRSPL +QPV
Sbjct: 301 QSNEKHAPTYTIPLSPVLSPTLPAEAPTAQVPPSLPRNSTMMQAVKTTPRQRSPLLNQPV 360
Query: 1189 PEXXXXXXXXXXXPFRAPLNVTNTASTSLPSVDLLQKLRLTQQHDQIQTQSLGKGAVAPS 1368
PE PFRAPLNVTNTA TSLPSVDLLQKLRLT QHDQIQTQ LGKGA+ S
Sbjct: 361 PELSHASLIANQSPFRAPLNVTNTAGTSLPSVDLLQKLRLTPQHDQIQTQPLGKGAMVAS 420
Query: 1369 FSPAAGQLATPESFIEPPPKTAAAR--ASASLSNMVLAPLQSMQQNQDPEVFAQPKVLSS 1542
FSPAAGQLATPESFIEPP KTAAAR ASASLSNMVLAPLQSMQQNQDPEVF QPKVLSS
Sbjct: 421 FSPAAGQLATPESFIEPPSKTAAARVAASASLSNMVLAPLQSMQQNQDPEVFVQPKVLSS 480
Query: 1543 AIPVAGPXXXXXXXXXXXXXXXXPSVFQQTVTKSSDLERKASSP 1674
AIPVAG PSVFQQTVT+SSDLERKASSP
Sbjct: 481 AIPVAGAPLVTATTTAVSSVLLAPSVFQQTVTRSSDLERKASSP 524
>ref|NP_689853.3| mRNA-decapping enzyme 1B [Homo sapiens].
Length = 617
Score = 198 bits (504), Expect = 1e-50
Identities = 96/163 (58%), Positives = 122/163 (74%)
Frame = +1
Query: 130 GQEMSLAALKQHDPYITSIADLTGQVALYTFCPKANQWEKTDIEGTLFVYRRSASPYHGF 309
G+++SLAAL++HDPYI I D+ QVALYTF +AN+WEKTD+EGTLFVY RSASP HGF
Sbjct: 13 GRDISLAALQRHDPYINRIVDVASQVALYTFGHRANEWEKTDVEGTLFVYTRSASPKHGF 72
Query: 310 TIVNRLNMHNLVEPVNKDLEFQLHEPFLLYRNASLSIYSIWFYDKNDCHRIAKLMADVVE 489
TI+NRL+M N EP+ KDL+FQL +PFLLYRNA LSIY IWFYDK +C RIA+LM ++ +
Sbjct: 73 TIMNRLSMENRTEPITKDLDFQLQDPFLLYRNARLSIYGIWFYDKEECQRIAELMKNLTQ 132
Query: 490 EETRRSQQAARDKQSPNQANGCSDHRPIDILEMLSRAKDEYER 618
E ++ Q SP N + + +DIL ML +AKDEY +
Sbjct: 133 YEQLKAHQGTGAGISPVILNS-GEGKEVDILRMLIKAKDEYTK 174
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.314 0.128 0.369
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 69,831,154
Number of extensions: 1939967
Number of successful extensions: 8102
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 7993
Number of HSP's successfully gapped: 2
Length of query: 575
Length of database: 18,297,164
Length adjustment: 108
Effective length of query: 467
Effective length of database: 14,737,052
Effective search space: 6882203284
Effective search space used: 6882203284
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002623
(1727 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_598522.3| mRNA-decapping enzyme 1A [Mus musculus]. 812 0.0
Alignment gi|NP_001028551.2| mRNA-decapping enzyme 1B [Mus musculus]. 197 3e-50
>ref|NP_598522.3| mRNA-decapping enzyme 1A [Mus musculus].
Length = 602
Score = 812 bits (2097), Expect(2) = 0.0
Identities = 426/545 (78%), Positives = 453/545 (83%), Gaps = 3/545 (0%)
Frame = +1
Query: 49 MALSCTRLRPR*RG*ALEFKMESLSRAGQEMSLAALKQHDPYITSIADLTGQVALYTFCP 228
MALSC+ +RPR RG AL KME LSRA QEMSLAALKQHDPYITSIADLTGQVALYTFCP
Sbjct: 1 MALSCSTVRPRRRGSALRSKMELLSRAEQEMSLAALKQHDPYITSIADLTGQVALYTFCP 60
Query: 229 KANQWEKTDIEGTLFVYRRSASPYHGFTIVNRLNMHNLVEPVNKDLEFQLHEPFLLYRNA 408
KANQWEKTDIEGTLFVYRRSASPYHGFTIVNRLNMHNLVEPVNKDLEFQLHEPFLLYRNA
Sbjct: 61 KANQWEKTDIEGTLFVYRRSASPYHGFTIVNRLNMHNLVEPVNKDLEFQLHEPFLLYRNA 120
Query: 409 SLSIYSIWFYDKNDCHRIAKLMADVVEEETRRSQQAARDKQSPNQANGCSDHRPIDILEM 588
SLSIYSIWFYDKNDCHRIAKLMADVVEEETRRSQQAARDKQSP+QANGCSD RPIDILEM
Sbjct: 121 SLSIYSIWFYDKNDCHRIAKLMADVVEEETRRSQQAARDKQSPSQANGCSDQRPIDILEM 180
Query: 589 LSRAKDEYERNQMGDSNISSPGLQPSTQISNLGSTETLEETPSGLQDKSALSGHKHLTVE 768
LSRAKDEYERNQMG SNISSPGLQPSTQ+SNLGSTETLEETPSG QDKSA SGHKHLTVE
Sbjct: 181 LSRAKDEYERNQMGGSNISSPGLQPSTQLSNLGSTETLEETPSGSQDKSAPSGHKHLTVE 240
Query: 769 ELFGTSLPKEQPTVVGLESEEVEKLPGDDSQKXXXXXXXXXXXXXXXXXXXXNMGIRPAA 948
ELFGTSLPKEQPT +GLESE+ +KL GD SQK N+GI AA
Sbjct: 241 ELFGTSLPKEQPTAMGLESEDTDKLLGDASQKEPSSFLPFPFEQSGGAPQSENLGIHSAA 300
Query: 949 HHSVQPEVTTPVLITPASITQSSEKQAPSYAIPLHPVLSPTLPAEASTAQAPPSLPRSTT 1128
HH+VQPEV+TPVLITPASI QS +K PSY +PL PVLSPTLPAEA T Q P LPR++T
Sbjct: 301 HHTVQPEVSTPVLITPASIAQSGDKHPPSYTLPLSPVLSPTLPAEAPTTQV-PHLPRNST 359
Query: 1129 MMQAVKTTPRQRSPLSSQPVPEXXXXXXXXXXXPFRAPLNVTNTASTSLPSVDLLQKLRL 1308
M+QAVKTTPRQ+SPL +QPVPE PFRAP+++ N A T+LPSVDLLQKLRL
Sbjct: 360 MIQAVKTTPRQKSPLLNQPVPELSHSSLVASQSPFRAPVSLANPAGTALPSVDLLQKLRL 419
Query: 1309 TQQHDQIQTQSLGKGAVAPSFSPAAGQLATPESFIEPPPKTAAARA--SASLSNMVLAP- 1479
T QHDQIQ Q LGKG +APSFS AAGQLATPESFIEP KTAAARA SASLSNMVLAP
Sbjct: 420 TPQHDQIQAQPLGKGTMAPSFSSAAGQLATPESFIEPSSKTAAARAAVSASLSNMVLAPT 479
Query: 1480 LQSMQQNQDPEVFAQPKVLSSAIPVAGPXXXXXXXXXXXXXXXXPSVFQQTVTKSSDLER 1659
LQSMQQNQDPEVF+QPKVL SAIP+AG PSVFQQTV +++DLER
Sbjct: 480 LQSMQQNQDPEVFSQPKVLPSAIPIAGSPLVPATTTAVSSVLLSPSVFQQTVPRAADLER 539
Query: 1660 KASSP 1674
KASSP
Sbjct: 540 KASSP 544
Score = 29.6 bits (65), Expect(2) = 0.0
Identities = 13/19 (68%), Positives = 16/19 (84%)
Frame = +2
Query: 1661 KQAPLSPLTVGTSENQRKP 1717
K + SPLTVGT+E+QRKP
Sbjct: 540 KASSPSPLTVGTAESQRKP 558
>ref|NP_001028551.2| mRNA-decapping enzyme 1B [Mus musculus].
Length = 578
Score = 197 bits (500), Expect = 3e-50
Identities = 109/226 (48%), Positives = 143/226 (63%), Gaps = 9/226 (3%)
Frame = +1
Query: 130 GQEMSLAALKQHDPYITSIADLTGQVALYTFCPKANQWEKTDIEGTLFVYRRSASPYHGF 309
G ++SLAAL++HDPYI+ I D+ QVALYTF +AN+WEKT +EGTLFVY RSASP HGF
Sbjct: 13 GHDISLAALRRHDPYISRIVDVASQVALYTFGHRANEWEKTGVEGTLFVYTRSASPKHGF 72
Query: 310 TIVNRLNMHNLVEPVNKDLEFQLHEPFLLYRNASLSIYSIWFYDKNDCHRIAKLMADVVE 489
TI+NRL+M N EP+ KDL+FQL PFLLYRN +LSIY IWFYDK +C RIAKLM ++ +
Sbjct: 73 TIMNRLSMENRTEPITKDLDFQLQNPFLLYRNGTLSIYGIWFYDKEECQRIAKLMKNLTQ 132
Query: 490 EETRRSQQAARDKQSPNQANGCSDHRPIDILEMLSRAKDEY-------ERNQMGDSN--I 642
E ++ A SP + + + +DIL+ML++AKDEY E QM +S+
Sbjct: 133 SEQLKACHGA--GSSPVTLSS-GEGQEVDILQMLTKAKDEYTKCKTCSEPKQMTNSSAIC 189
Query: 643 SSPGLQPSTQISNLGSTETLEETPSGLQDKSALSGHKHLTVEELFG 780
+P L + S PS D +HL++ LFG
Sbjct: 190 DNPKLIKPVPVRPSSSQRLQGPAPSKTSDPEP----QHLSLTALFG 231
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.314 0.128 0.369
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 59,260,532
Number of extensions: 1634200
Number of successful extensions: 6403
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 6330
Number of HSP's successfully gapped: 3
Length of query: 575
Length of database: 15,617,559
Length adjustment: 107
Effective length of query: 468
Effective length of database: 12,403,707
Effective search space: 5804934876
Effective search space used: 5804934876
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002623
(1727 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003358514.1| PREDICTED: mRNA-decapping enzyme 1A isoform ... 914 0.0
Alignment gi|XP_003358515.1| PREDICTED: mRNA-decapping enzyme 1A isoform ... 821 0.0
Alignment gi|XP_003355657.1| PREDICTED: mRNA-decapping enzyme 1B-like [Su... 202 4e-52
>ref|XP_003358514.1| PREDICTED: mRNA-decapping enzyme 1A isoform 1 [Sus scrofa].
Length = 580
Score = 914 bits (2362), Expect = 0.0
Identities = 472/522 (90%), Positives = 474/522 (90%)
Frame = +1
Query: 109 MESLSRAGQEMSLAALKQHDPYITSIADLTGQVALYTFCPKANQWEKTDIEGTLFVYRRS 288
MESLSRAGQEMSLAALKQHDPYITSIADLTGQVALYTFCPKANQWEKTDIEGTLFVYRRS
Sbjct: 1 MESLSRAGQEMSLAALKQHDPYITSIADLTGQVALYTFCPKANQWEKTDIEGTLFVYRRS 60
Query: 289 ASPYHGFTIVNRLNMHNLVEPVNKDLEFQLHEPFLLYRNASLSIYSIWFYDKNDCHRIAK 468
ASPYHGFTIVNRLNMHNLVEPVNKDLEFQLHEPFLLYRNASLSIYSIWFYDKNDCHRIAK
Sbjct: 61 ASPYHGFTIVNRLNMHNLVEPVNKDLEFQLHEPFLLYRNASLSIYSIWFYDKNDCHRIAK 120
Query: 469 LMADVVEEETRRSQQAARDKQSPNQANGCSDHRPIDILEMLSRAKDEYERNQMGDSNISS 648
LMADV+EEETRRSQQAARDKQSPNQANGCSDHRPIDILEMLSRAKDEYERNQMGDSNISS
Sbjct: 121 LMADVLEEETRRSQQAARDKQSPNQANGCSDHRPIDILEMLSRAKDEYERNQMGDSNISS 180
Query: 649 PGLQPSTQISNLGSTETLEETPSGLQDKSALSGHKHLTVEELFGTSLPKEQPTVVGLESE 828
PGLQPSTQISNLGSTETLEETPSGLQDKSALSGHKHLTVEELFGTSLPKEQPTVVGLESE
Sbjct: 181 PGLQPSTQISNLGSTETLEETPSGLQDKSALSGHKHLTVEELFGTSLPKEQPTVVGLESE 240
Query: 829 EVEKLPGDDSQKXXXXXXXXXXXXXXXXXXXXNMGIRPAAHHSVQPEVTTPVLITPASIT 1008
EVEKLPGD SQK NMGIRPAAHHSVQPEVTTPVLITPASIT
Sbjct: 241 EVEKLPGDASQKEPSSFLPFSFEPSGGGPQSENMGIRPAAHHSVQPEVTTPVLITPASIT 300
Query: 1009 QSSEKQAPSYAIPLHPVLSPTLPAEASTAQAPPSLPRSTTMMQAVKTTPRQRSPLSSQPV 1188
QSSEKQAPSYAIPLHPVLSPTLPAEASTAQAPPSLPRSTTMMQAVKTTPRQRSPLSSQPV
Sbjct: 301 QSSEKQAPSYAIPLHPVLSPTLPAEASTAQAPPSLPRSTTMMQAVKTTPRQRSPLSSQPV 360
Query: 1189 PEXXXXXXXXXXXPFRAPLNVTNTASTSLPSVDLLQKLRLTQQHDQIQTQSLGKGAVAPS 1368
PE PFRAPLNVTNTASTSLPSVDLLQKLRLTQQHDQIQTQSLGKGAVAPS
Sbjct: 361 PELSQASLAASQSPFRAPLNVTNTASTSLPSVDLLQKLRLTQQHDQIQTQSLGKGAVAPS 420
Query: 1369 FSPAAGQLATPESFIEPPPKTAAARASASLSNMVLAPLQSMQQNQDPEVFAQPKVLSSAI 1548
FSPAAGQLATPESFIEPPPKTAAARASASLSNMVLAPLQSMQQNQDPEVFAQPKVLSSAI
Sbjct: 421 FSPAAGQLATPESFIEPPPKTAAARASASLSNMVLAPLQSMQQNQDPEVFAQPKVLSSAI 480
Query: 1549 PVAGPXXXXXXXXXXXXXXXXPSVFQQTVTKSSDLERKASSP 1674
PVAGP PSVFQQTVT+SSDLERKASSP
Sbjct: 481 PVAGPALVTATTSAVSSVLLSPSVFQQTVTRSSDLERKASSP 522
>ref|XP_003358515.1| PREDICTED: mRNA-decapping enzyme 1A isoform 2 [Sus scrofa].
Length = 542
Score = 821 bits (2121), Expect = 0.0
Identities = 434/522 (83%), Positives = 436/522 (83%)
Frame = +1
Query: 109 MESLSRAGQEMSLAALKQHDPYITSIADLTGQVALYTFCPKANQWEKTDIEGTLFVYRRS 288
MESLSRAGQEMSLAALKQHDPYITSIADLTGQVALYTFCPKANQWEKTDIEGTLFVYRRS
Sbjct: 1 MESLSRAGQEMSLAALKQHDPYITSIADLTGQVALYTFCPKANQWEKTDIEGTLFVYRRS 60
Query: 289 ASPYHGFTIVNRLNMHNLVEPVNKDLEFQLHEPFLLYRNASLSIYSIWFYDKNDCHRIAK 468
ASPYHGFTIVNRLNMHNLVEPVNKDLEFQLHEPFLLYRNASLSIYSIWFYDKNDCHRIAK
Sbjct: 61 ASPYHGFTIVNRLNMHNLVEPVNKDLEFQLHEPFLLYRNASLSIYSIWFYDKNDCHRIAK 120
Query: 469 LMADVVEEETRRSQQAARDKQSPNQANGCSDHRPIDILEMLSRAKDEYERNQMGDSNISS 648
LMADV+EEETRRSQQAARDKQSPNQANGCSDHRPIDILEMLSRAKDEYER
Sbjct: 121 LMADVLEEETRRSQQAARDKQSPNQANGCSDHRPIDILEMLSRAKDEYER---------- 170
Query: 649 PGLQPSTQISNLGSTETLEETPSGLQDKSALSGHKHLTVEELFGTSLPKEQPTVVGLESE 828
SALSGHKHLTVEELFGTSLPKEQPTVVGLESE
Sbjct: 171 ----------------------------SALSGHKHLTVEELFGTSLPKEQPTVVGLESE 202
Query: 829 EVEKLPGDDSQKXXXXXXXXXXXXXXXXXXXXNMGIRPAAHHSVQPEVTTPVLITPASIT 1008
EVEKLPGD SQK NMGIRPAAHHSVQPEVTTPVLITPASIT
Sbjct: 203 EVEKLPGDASQKEPSSFLPFSFEPSGGGPQSENMGIRPAAHHSVQPEVTTPVLITPASIT 262
Query: 1009 QSSEKQAPSYAIPLHPVLSPTLPAEASTAQAPPSLPRSTTMMQAVKTTPRQRSPLSSQPV 1188
QSSEKQAPSYAIPLHPVLSPTLPAEASTAQAPPSLPRSTTMMQAVKTTPRQRSPLSSQPV
Sbjct: 263 QSSEKQAPSYAIPLHPVLSPTLPAEASTAQAPPSLPRSTTMMQAVKTTPRQRSPLSSQPV 322
Query: 1189 PEXXXXXXXXXXXPFRAPLNVTNTASTSLPSVDLLQKLRLTQQHDQIQTQSLGKGAVAPS 1368
PE PFRAPLNVTNTASTSLPSVDLLQKLRLTQQHDQIQTQSLGKGAVAPS
Sbjct: 323 PELSQASLAASQSPFRAPLNVTNTASTSLPSVDLLQKLRLTQQHDQIQTQSLGKGAVAPS 382
Query: 1369 FSPAAGQLATPESFIEPPPKTAAARASASLSNMVLAPLQSMQQNQDPEVFAQPKVLSSAI 1548
FSPAAGQLATPESFIEPPPKTAAARASASLSNMVLAPLQSMQQNQDPEVFAQPKVLSSAI
Sbjct: 383 FSPAAGQLATPESFIEPPPKTAAARASASLSNMVLAPLQSMQQNQDPEVFAQPKVLSSAI 442
Query: 1549 PVAGPXXXXXXXXXXXXXXXXPSVFQQTVTKSSDLERKASSP 1674
PVAGP PSVFQQTVT+SSDLERKASSP
Sbjct: 443 PVAGPALVTATTSAVSSVLLSPSVFQQTVTRSSDLERKASSP 484
>ref|XP_003355657.1| PREDICTED: mRNA-decapping enzyme 1B-like [Sus scrofa].
Length = 559
Score = 202 bits (515), Expect = 4e-52
Identities = 148/446 (33%), Positives = 215/446 (48%), Gaps = 22/446 (4%)
Frame = +1
Query: 130 GQEMSLAALKQHDPYITSIADLTGQVALYTFCPKANQWEKTDIEGTLFVYRRSASPYHGF 309
G+++SLAAL++HDPYI+ I D+ QVALYTF +AN+WEKTD+EGTLFVY RSASP HGF
Sbjct: 12 GRDISLAALRRHDPYISHIVDVASQVALYTFGHRANEWEKTDVEGTLFVYTRSASPKHGF 71
Query: 310 TIVNRLNMHNLVEPVNKDLEFQLHEPFLLYRNASLSIYSIWFYDKNDCHRIAKLMADVVE 489
TI+NRL+M N EP+ KDL+F L +PFLLYRNA LSIY IWFYDK +C RIA+LM ++ +
Sbjct: 72 TIMNRLSMENRTEPITKDLDFLLQDPFLLYRNARLSIYGIWFYDKEECQRIAELMKNLTQ 131
Query: 490 EETRRSQQ-----AARDKQSPNQANGCSDHRPIDILEMLSRAKDEY-------ERNQMGD 633
E ++ AA P G + R +DIL ML++A+DEY E Q+
Sbjct: 132 YEQLKAHHGTGAGAAARAGGPTMTLGSGESREVDILRMLTKARDEYTKCKTCSEPKQITS 191
Query: 634 SN--ISSPGLQPSTQISNLGSTETLEETPSGLQDKSALSGHKHLTVEELFGTSLPKEQPT 807
S+ ++P L + G+ + PS D +HL++ LFG +Q
Sbjct: 192 SSAIYNNPNLIKPIPVKPSGNRQQRIPQPSQTLDPEP----QHLSLMALFG-----KQDK 242
Query: 808 VVGLESEEVEKLPGDDSQKXXXXXXXXXXXXXXXXXXXXNMGIRPAAHHSVQPEVTTPVL 987
V ++ + P Q+ +M HS E
Sbjct: 243 AVCQQTVGPPQTPHQQLQQ-------EKGVQQGQQGVVHSMSYEDPRRHSPLVEKQ---- 291
Query: 988 ITPASITQSSEKQAPSYAIPLHPVLSPTLPAEASTAQAPP-------SLPRSTTMMQAVK 1146
+ PA I + + A + + P P E+ T A P PR+ +++ ++
Sbjct: 292 LCPA-IQKLMVRSADLHPLSELPENQPCRDGESCTGAAQPGSPCSTLGAPRTQNLLEKLQ 350
Query: 1147 TTPRQRSPLS-SQPVPEXXXXXXXXXXXPFRAPLNVTNTASTSLPSVDLLQKLRLTQQHD 1323
++PR S + P P P V S+ + +LL+KL+ QQ
Sbjct: 351 SSPRTASRCDPAAPAPSSSATTPAAPAPPVPGSQAV---GSSEVSPRELLRKLQGAQQEP 407
Query: 1324 QIQTQSLGKGAVAPSFSPAAGQLATP 1401
+ + + A+A F A P
Sbjct: 408 PVPS----RPALAAKFPLATSSARAP 429
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.314 0.128 0.369
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 43,957,471
Number of extensions: 1232407
Number of successful extensions: 5098
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 5060
Number of HSP's successfully gapped: 4
Length of query: 575
Length of database: 11,343,932
Length adjustment: 104
Effective length of query: 471
Effective length of database: 8,754,644
Effective search space: 4123437324
Effective search space used: 4123437324
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002623
(1727 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr13 1441 0.0
>Sscrofa_Chr13
|| Length = 218635234
Score = 1441 bits (727), Expect = 0.0
Identities = 746/755 (98%)
Strand = Plus / Minus
Query: 731 agtctgctctttccggacacaaacatctgacggtggaagaattatttggaacctctttac 790
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38472118 agtctgctctttccggacacaaacatctgacggtggaagaattatttggaacctctttac 38472059
Query: 791 caaaggaacagccaacagttgtgggtctggagtcagaagaagtggagaaactaccaggag 850
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38472058 caaaggaacagccaacagttgtgggtctggagtcagaagaagtggagaaactaccaggag 38471999
Query: 851 atgactcccagaaagagcccagctcattcctaccattttcctttgagccttcaggagggg 910
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38471998 atgcctcccagaaagagcccagctcattcctaccattttcctttgagccttcaggagggg 38471939
Query: 911 gccctcagtcagaaaacatgggcatccgtcctgctgcccaccactcagtgcaacctgaag 970
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38471938 gccctcagtcagaaaacatgggcatccgtcctgctgcccaccactcagtgcaacctgaag 38471879
Query: 971 tcaccaccccggtgctaatcactcctgcctccatcacacagtctagtgaaaagcaggccc 1030
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38471878 tcaccaccccggtgctaatcactcctgcctccatcacacagtctagtgaaaagcaggccc 38471819
Query: 1031 caagctatgcgatcccgttgcaccctgtgctcagtcccactctaccagcagaagcttcta 1090
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38471818 caagctatgcgatcccgttgcaccctgtgctcagtcccactctaccagcagaagcttcta 38471759
Query: 1091 ctgcacaggctcctcccagcttaccccgaagcaccaccatgatgcaggcagtgaagacca 1150
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38471758 ctgcacaggctcctcccagcttaccccgaagcaccaccatgatgcaggcagtgaagacca 38471699
Query: 1151 cgcctagacaaaggtctccactctcgagtcagccagtccctgagctgagccaggccagtc 1210
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38471698 cgcctagacaaaggtctccactctcgagtcagccagtccctgagctgagccaggccagtc 38471639
Query: 1211 tggctgccagccagagcccattcagggccccactgaacgtgacaaacacagctagtacat 1270
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38471638 tggctgccagccagagcccattcagggccccactgaacgtgacaaacacagctagtacat 38471579
Query: 1271 ccctcccaagtgttgatcttctccagaaactcaggttgacccaacagcatgaccaaatac 1330
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38471578 ccctcccaagtgttgatcttctccagaaactcaggttgacccaacagcatgaccaaatac 38471519
Query: 1331 agacacagtcacttgggaaaggtgcagtggcacccagcttttctccagcagctggccagc 1390
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38471518 agacacagtcacttgggaaaggtgcagtggcacccagcttttctccagcagctggccagc 38471459
Query: 1391 tggccacacctgagagcttcatagagnnnnnnnntaaaacagcagcagcaagagcctcag 1450
|||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 38471458 tggccacacctgagagcttcatagagcctccccctaaaacagcagcagcaagagcctcag 38471399
Query: 1451 cctccctcagcaacatggtgcttgctccccttcag 1485
|||||||||||||||||||||||||||||||||||
Sbjct: 38471398 cctccctcagcaacatggtgcttgctccccttcag 38471364
Score = 484 bits (244), Expect = e-134
Identities = 244/244 (100%)
Strand = Plus / Minus
Query: 1 agagacggaagttaaggacgctgacgcagctgggggaactttgcctcgatggcactttcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38525387 agagacggaagttaaggacgctgacgcagctgggggaactttgcctcgatggcactttcc 38525328
Query: 61 tgtacgcgactccgcccccgctaaaggggctaggctctggaattcaagatggagtcgctg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38525327 tgtacgcgactccgcccccgctaaaggggctaggctctggaattcaagatggagtcgctg 38525268
Query: 121 agtcgagctgggcaggagatgagcctagcggccctgaagcaacacgacccctacatcacc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38525267 agtcgagctgggcaggagatgagcctagcggccctgaagcaacacgacccctacatcacc 38525208
Query: 181 agcatcgcagatctcacgggccaagtcgcgttgtacaccttctgccccaaggccaaccag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38525207 agcatcgcagatctcacgggccaagtcgcgttgtacaccttctgccccaaggccaaccag 38525148
Query: 241 tggg 244
||||
Sbjct: 38525147 tggg 38525144
Score = 295 bits (149), Expect = 4e-77
Identities = 172/177 (97%), Gaps = 2/177 (1%)
Strand = Plus / Minus
Query: 1551 ggtggcaggccccgcactggttactgcaacaacctcagcagtgtcctcagtcctgctctc 1610
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 38466722 ggtggcaggccccgcactggttactgcaacaacctcagcagtgtcctcggtcctgctctc 38466663
Query: 1611 tccaagtgttttccagcagacagtcacaaagtcctcagacctggagaggaaagcaagctc 1670
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 38466662 tccaagtgttttccagcagacagtcacaaggtcctcagacctggagaggaaagcaagctc 38466603
Query: 1671 ccctttctcctctcactgttggaacatcagaaaatcaaagaaagcctttccattatc 1727
||| ||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct: 38466602 ccc-ttctcctctcactgttggaacatcagaaaatcagagaaagcc-ttccattatc 38466548
Score = 268 bits (135), Expect = 9e-69
Identities = 138/139 (99%)
Strand = Plus / Minus
Query: 480 cgtggtagaagaagagacacggcggtcccagcaagcagctcgggataagcagagtcccaa 539
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38483464 cgtgttagaagaagagacacggcggtcccagcaagcagctcgggataagcagagtcccaa 38483405
Query: 540 ccaggccaatggctgcagtgaccacaggcccatcgacatcctggagatgctaagcagagc 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38483404 ccaggccaatggctgcagtgaccacaggcccatcgacatcctggagatgctaagcagagc 38483345
Query: 600 caaggatgagtatgagagg 618
|||||||||||||||||||
Sbjct: 38483344 caaggatgagtatgagagg 38483326
Score = 260 bits (131), Expect = 2e-66
Identities = 131/131 (100%)
Strand = Plus / Minus
Query: 282 aaggtcagcttcaccttaccatggttttaccattgtgaatcgactgaatatgcacaattt 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38518735 aaggtcagcttcaccttaccatggttttaccattgtgaatcgactgaatatgcacaattt 38518676
Query: 342 agttgaaccagtgaataaagatttggaatttcagctccatgaaccatttcttctatatag 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38518675 agttgaaccagtgaataaagatttggaatttcagctccatgaaccatttcttctatatag 38518616
Query: 402 aaatgcaagct 412
|||||||||||
Sbjct: 38518615 aaatgcaagct 38518605
Score = 228 bits (115), Expect = 8e-57
Identities = 115/115 (100%)
Strand = Plus / Minus
Query: 618 gaatcagatgggtgactcaaatatctccagccctgggttacagccaagcactcagatctc 677
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38481633 gaatcagatgggtgactcaaatatctccagccctgggttacagccaagcactcagatctc 38481574
Query: 678 caatctgggaagcactgagactctggaagagacaccatctgggttacaagataag 732
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38481573 caatctgggaagcactgagactctggaagagacaccatctgggttacaagataag 38481519
Score = 141 bits (71), Expect = 1e-30
Identities = 71/71 (100%)
Strand = Plus / Minus
Query: 1483 cagtctatgcagcaaaaccaggatcctgaagtttttgcccagcctaaggtgttatccagt 1542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38469266 cagtctatgcagcaaaaccaggatcctgaagtttttgcccagcctaaggtgttatccagt 38469207
Query: 1543 gccatcccggt 1553
|||||||||||
Sbjct: 38469206 gccatcccggt 38469196
Score = 133 bits (67), Expect = 4e-28
Identities = 67/67 (100%)
Strand = Plus / Minus
Query: 413 tgtcaatatacagtatctggttttatgacaagaatgactgtcaccggatagccaaactca 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38489768 tgtcaatatacagtatctggttttatgacaagaatgactgtcaccggatagccaaactca 38489709
Query: 473 tggccga 479
|||||||
Sbjct: 38489708 tggccga 38489702
Score = 91.7 bits (46), Expect = 1e-15
Identities = 49/50 (98%)
Strand = Plus / Minus
Query: 243 ggagaagactgatatagaagggaccttatttgtatatcgaaggtcagctt 292
|||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 38521678 ggagaagactgatatagaagggaccttatttgtatatcgaaggtaagctt 38521629
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 51,408,464
Number of extensions: 330
Number of successful extensions: 330
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 329
Number of HSP's successfully gapped: 10
Length of query: 1727
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1705
Effective length of database: 2,808,408,574
Effective search space: 4788336618670
Effective search space used: 4788336618670
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)