Animal-Genome cDNA 20110601C-002662


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002662
         (1383 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001069276.1| nucleotide exchange factor SIL1 precursor [B...   671   0.0  
Alignment   gi|NP_001039596.1| hsp70-binding protein 1 [Bos taurus].              53   7e-07

>ref|NP_001069276.1| nucleotide exchange factor SIL1 precursor [Bos taurus].
          Length = 462

 Score =  671 bits (1730), Expect = 0.0
 Identities = 346/401 (86%), Positives = 365/401 (91%)
 Frame = +3

Query: 141  PCQGLILLRMARLGILLGLLMAACFTFCLGRKDSELALTHPEESSTKETARKGSTAXXXX 320
            P QGL+L RMA L +LL +LM +CF FCL  K+SE ALT+PE+SSTKET RK +      
Sbjct: 2    PHQGLLLFRMAPLCVLLSMLMVSCFNFCLCHKNSEFALTNPEKSSTKETERKETEEELEP 61

Query: 321  XXXXXXXFHPTHEWQALHPGQAVPAGSHVRLNLQTGAREVKLQDEDKFRSNLKGLKKGKR 500
                   FHPTHEWQAL PGQAVPAGSHVRLNLQTGAREVKL DEDKF++NLKGLKKGKR
Sbjct: 62   KILEV--FHPTHEWQALRPGQAVPAGSHVRLNLQTGAREVKLHDEDKFQTNLKGLKKGKR 119

Query: 501  LDINTNTYTSQDLKSALAKFKEGAERENSKEDKERQAKVKRLFRPIEELKKDFEELNVVI 680
            LDINTNTYTSQDLK+ALAKFKEGAE ENSKED+ERQAKVKRLFRPIEELKKDFEELNVVI
Sbjct: 120  LDINTNTYTSQDLKNALAKFKEGAEMENSKEDQERQAKVKRLFRPIEELKKDFEELNVVI 179

Query: 681  ETDMQIMVRLINKFNSSSSSLEEKVAALFDLEYYVHQMDNAQDLLSFGGLQVVINGLNST 860
            ETDMQIMVRLINKFNSSSSSLEEK+AALFDLEYYVHQMDNAQDLLSFGGLQVVINGLNST
Sbjct: 180  ETDMQIMVRLINKFNSSSSSLEEKIAALFDLEYYVHQMDNAQDLLSFGGLQVVINGLNST 239

Query: 861  EPLVKEYAAFALGAAFSSNPKVQVEAVEGGALQKLLVILATEQPLTAKKKVLFALCSLLR 1040
            EPLVKEYAAF LGAAFSSNPKVQVEA+EGGALQKLLVILATEQPLT KKK LFALCSLLR
Sbjct: 240  EPLVKEYAAFVLGAAFSSNPKVQVEAIEGGALQKLLVILATEQPLTTKKKALFALCSLLR 299

Query: 1041 HFPYAQQQFLKLGGLQVLRSLVQEKGTEVLAVRVVTLLYDLVTEKMFAEEEAELTRETSP 1220
            HFPYAQQQFLKLGGLQVLRSLVQEKG EVLAVRVVTLLYDLVTEKMFAEE+AELT + SP
Sbjct: 300  HFPYAQQQFLKLGGLQVLRSLVQEKGMEVLAVRVVTLLYDLVTEKMFAEEDAELTWDMSP 359

Query: 1221 EKLQQYRQVHLLPGLREQAWCEITAHLLALPEHDAREKVLQ 1343
            ++LQQYRQVHLLP L+EQ WCEITAHLLALPEHDAREKVLQ
Sbjct: 360  KRLQQYRQVHLLPSLQEQGWCEITAHLLALPEHDAREKVLQ 400


>ref|NP_001039596.1| hsp70-binding protein 1 [Bos taurus].
          Length = 357

 Score = 52.8 bits (125), Expect = 7e-07
 Identities = 44/142 (30%), Positives = 65/142 (45%), Gaps = 1/142 (0%)
 Frame = +3

Query: 744  EEKVAALFDLEYYVHQMDNAQDLLSFGGLQVVINGLNSTEPLVKEYAAFALGAAFSSNPK 923
            +E+  AL  L      MDNA D     G+ +++       P    + A  L    S N  
Sbjct: 116  QEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGPAGLRWRAAQLIGTCSQNVA 175

Query: 924  VQVEAVEG-GALQKLLVILATEQPLTAKKKVLFALCSLLRHFPYAQQQFLKLGGLQVLRS 1100
               E V G GAL+KLL +L  +     + K LFA+  L+R       QFL+L G  VL  
Sbjct: 176  AIQEQVLGLGALRKLLRLLDRDPCDAVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMR 235

Query: 1101 LVQEKGTEVLAVRVVTLLYDLV 1166
             +Q++  + L V+   LL +L+
Sbjct: 236  AMQQQ-VQKLKVKSAFLLQNLL 256


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 48,652,688
Number of extensions: 1394193
Number of successful extensions: 8792
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 8674
Number of HSP's successfully gapped: 2
Length of query: 461
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 355
Effective length of database: 14,174,046
Effective search space: 5031786330
Effective search space used: 5031786330
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002662
         (1383 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_531925.2| PREDICTED: similar to endoplasmic reticulum cha...   676   0.0  
Alignment   gi|XP_533584.1| PREDICTED: similar to hsp70-interacting protein...    53   8e-07

>ref|XP_531925.2| PREDICTED: similar to endoplasmic reticulum chaperone SIL1, homolog
            of yeast [Canis familiaris].
          Length = 475

 Score =  676 bits (1745), Expect = 0.0
 Identities = 353/410 (86%), Positives = 369/410 (90%), Gaps = 11/410 (2%)
 Frame = +3

Query: 147  QGLILLRMARLGILLGLLMAACFTFCLGRKD-----------SELALTHPEESSTKETAR 293
            QGL   RMA LG+LLGLLMA+CFTFCL  ++            E ALT PE+SSTKE  R
Sbjct: 4    QGLPPSRMALLGMLLGLLMASCFTFCLSHQNPWVTPCVFLSLKEFALTSPEKSSTKEAER 63

Query: 294  KGSTAXXXXXXXXXXXFHPTHEWQALHPGQAVPAGSHVRLNLQTGAREVKLQDEDKFRSN 473
            K +TA           FHPT+EWQAL PGQAVP GSHVRLNLQTGAREVKLQ+EDK+R+N
Sbjct: 64   KDTTAEEELDSEVLEVFHPTYEWQALRPGQAVPVGSHVRLNLQTGAREVKLQEEDKYRNN 123

Query: 474  LKGLKKGKRLDINTNTYTSQDLKSALAKFKEGAERENSKEDKERQAKVKRLFRPIEELKK 653
            LKGL+KGKRLDINTNTYTSQDLKSALAKFKEGAE E+SKEDK RQAKVKRLFRPIEELKK
Sbjct: 124  LKGLRKGKRLDINTNTYTSQDLKSALAKFKEGAEVESSKEDKARQAKVKRLFRPIEELKK 183

Query: 654  DFEELNVVIETDMQIMVRLINKFNSSSSSLEEKVAALFDLEYYVHQMDNAQDLLSFGGLQ 833
            DFEELNVVIETDMQIMVRLINKFNSSSSSLEEK+AALFDLEYYVHQMDNAQDLLSFGGLQ
Sbjct: 184  DFEELNVVIETDMQIMVRLINKFNSSSSSLEEKIAALFDLEYYVHQMDNAQDLLSFGGLQ 243

Query: 834  VVINGLNSTEPLVKEYAAFALGAAFSSNPKVQVEAVEGGALQKLLVILATEQPLTAKKKV 1013
            VVINGLNSTEPLVKEYAAF LGAAFSSNPKVQVEA+EGGALQKLLVILATEQPLTAKKKV
Sbjct: 244  VVINGLNSTEPLVKEYAAFVLGAAFSSNPKVQVEAIEGGALQKLLVILATEQPLTAKKKV 303

Query: 1014 LFALCSLLRHFPYAQQQFLKLGGLQVLRSLVQEKGTEVLAVRVVTLLYDLVTEKMFAEEE 1193
            LFALCSLLRHFPYAQQQFLKLGGLQVLRSLVQ KGTEVLAVRVVTLLYDLVTEKMFAEEE
Sbjct: 304  LFALCSLLRHFPYAQQQFLKLGGLQVLRSLVQAKGTEVLAVRVVTLLYDLVTEKMFAEEE 363

Query: 1194 AELTRETSPEKLQQYRQVHLLPGLREQAWCEITAHLLALPEHDAREKVLQ 1343
            AELT+E+SPEKLQQYRQVHLLPGLREQ WCEITAHLLALPEHDAREKVLQ
Sbjct: 364  AELTQESSPEKLQQYRQVHLLPGLREQGWCEITAHLLALPEHDAREKVLQ 413


>ref|XP_533584.1| PREDICTED: similar to hsp70-interacting protein [Canis familiaris].
          Length = 357

 Score = 52.8 bits (125), Expect = 8e-07
 Identities = 44/142 (30%), Positives = 65/142 (45%), Gaps = 1/142 (0%)
 Frame = +3

Query: 744  EEKVAALFDLEYYVHQMDNAQDLLSFGGLQVVINGLNSTEPLVKEYAAFALGAAFSSNPK 923
            +E+  AL  L      MDNA D     G+ +++       P    + A  L    S N  
Sbjct: 116  QEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGPAGLRWRAAQLIGTCSQNVA 175

Query: 924  VQVEAVEG-GALQKLLVILATEQPLTAKKKVLFALCSLLRHFPYAQQQFLKLGGLQVLRS 1100
               E V G GAL+KLL +L  +     + K LFA+  L+R       QFL+L G  VL  
Sbjct: 176  AIQEQVLGLGALRKLLRLLDRDPCDLVRVKALFAISCLVREQEVGLLQFLRLDGFSVLMR 235

Query: 1101 LVQEKGTEVLAVRVVTLLYDLV 1166
             +Q++  + L V+   LL +L+
Sbjct: 236  AMQQQ-VQKLKVKSAFLLQNLL 256


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 50,808,567
Number of extensions: 1438102
Number of successful extensions: 9573
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 9385
Number of HSP's successfully gapped: 2
Length of query: 461
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 355
Effective length of database: 15,340,888
Effective search space: 5446015240
Effective search space used: 5446015240
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002662
         (1383 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_071909.1| nucleotide exchange factor SIL1 precursor [Homo...   660   0.0  
Alignment   gi|NP_001032722.1| nucleotide exchange factor SIL1 precursor [H...   660   0.0  
Alignment   gi|NP_036399.3| hsp70-binding protein 1 [Homo sapiens].               53   6e-07
Alignment   gi|NP_001123578.1| hsp70-binding protein 1 [Homo sapiens].            53   6e-07

>ref|NP_071909.1| nucleotide exchange factor SIL1 precursor [Homo sapiens].
          Length = 461

 Score =  660 bits (1704), Expect = 0.0
 Identities = 347/400 (86%), Positives = 362/400 (90%), Gaps = 1/400 (0%)
 Frame = +3

Query: 147  QGLILLRMARLGILLGLLMAACFTFCLGRKD-SELALTHPEESSTKETARKGSTAXXXXX 323
            Q L   RMA LG+LLGLLMAACFTFCL  ++  E ALT+PE+SSTKET RK + A     
Sbjct: 4    QSLPSSRMAPLGMLLGLLMAACFTFCLSHQNLKEFALTNPEKSSTKETERKETKAEEELD 63

Query: 324  XXXXXXFHPTHEWQALHPGQAVPAGSHVRLNLQTGAREVKLQDEDKFRSNLKGLKKGKRL 503
                  FHPTHEWQAL PGQAVPAGSHVRLNLQTG RE KLQ EDKFR+NLKG    KRL
Sbjct: 64   AEVLEVFHPTHEWQALQPGQAVPAGSHVRLNLQTGEREAKLQYEDKFRNNLKG----KRL 119

Query: 504  DINTNTYTSQDLKSALAKFKEGAERENSKEDKERQAKVKRLFRPIEELKKDFEELNVVIE 683
            DINTNTYTSQDLKSALAKFKEGAE E+SKEDK RQA+VKRLFRPIEELKKDF+ELNVVIE
Sbjct: 120  DINTNTYTSQDLKSALAKFKEGAEMESSKEDKARQAEVKRLFRPIEELKKDFDELNVVIE 179

Query: 684  TDMQIMVRLINKFNSSSSSLEEKVAALFDLEYYVHQMDNAQDLLSFGGLQVVINGLNSTE 863
            TDMQIMVRLINKFNSSSSSLEEK+AALFDLEYYVHQMDNAQDLLSFGGLQVVINGLNSTE
Sbjct: 180  TDMQIMVRLINKFNSSSSSLEEKIAALFDLEYYVHQMDNAQDLLSFGGLQVVINGLNSTE 239

Query: 864  PLVKEYAAFALGAAFSSNPKVQVEAVEGGALQKLLVILATEQPLTAKKKVLFALCSLLRH 1043
            PLVKEYAAF LGAAFSSNPKVQVEA+EGGALQKLLVILATEQPLTAKKKVLFALCSLLRH
Sbjct: 240  PLVKEYAAFVLGAAFSSNPKVQVEAIEGGALQKLLVILATEQPLTAKKKVLFALCSLLRH 299

Query: 1044 FPYAQQQFLKLGGLQVLRSLVQEKGTEVLAVRVVTLLYDLVTEKMFAEEEAELTRETSPE 1223
            FPYAQ+QFLKLGGLQVLR+LVQEKGTEVLAVRVVTLLYDLVTEKMFAEEEAELT+E SPE
Sbjct: 300  FPYAQRQFLKLGGLQVLRTLVQEKGTEVLAVRVVTLLYDLVTEKMFAEEEAELTQEMSPE 359

Query: 1224 KLQQYRQVHLLPGLREQAWCEITAHLLALPEHDAREKVLQ 1343
            KLQQYRQVHLLPGL EQ WCEITAHLLALPEHDAREKVLQ
Sbjct: 360  KLQQYRQVHLLPGLWEQGWCEITAHLLALPEHDAREKVLQ 399


>ref|NP_001032722.1| nucleotide exchange factor SIL1 precursor [Homo sapiens].
          Length = 461

 Score =  660 bits (1704), Expect = 0.0
 Identities = 347/400 (86%), Positives = 362/400 (90%), Gaps = 1/400 (0%)
 Frame = +3

Query: 147  QGLILLRMARLGILLGLLMAACFTFCLGRKD-SELALTHPEESSTKETARKGSTAXXXXX 323
            Q L   RMA LG+LLGLLMAACFTFCL  ++  E ALT+PE+SSTKET RK + A     
Sbjct: 4    QSLPSSRMAPLGMLLGLLMAACFTFCLSHQNLKEFALTNPEKSSTKETERKETKAEEELD 63

Query: 324  XXXXXXFHPTHEWQALHPGQAVPAGSHVRLNLQTGAREVKLQDEDKFRSNLKGLKKGKRL 503
                  FHPTHEWQAL PGQAVPAGSHVRLNLQTG RE KLQ EDKFR+NLKG    KRL
Sbjct: 64   AEVLEVFHPTHEWQALQPGQAVPAGSHVRLNLQTGEREAKLQYEDKFRNNLKG----KRL 119

Query: 504  DINTNTYTSQDLKSALAKFKEGAERENSKEDKERQAKVKRLFRPIEELKKDFEELNVVIE 683
            DINTNTYTSQDLKSALAKFKEGAE E+SKEDK RQA+VKRLFRPIEELKKDF+ELNVVIE
Sbjct: 120  DINTNTYTSQDLKSALAKFKEGAEMESSKEDKARQAEVKRLFRPIEELKKDFDELNVVIE 179

Query: 684  TDMQIMVRLINKFNSSSSSLEEKVAALFDLEYYVHQMDNAQDLLSFGGLQVVINGLNSTE 863
            TDMQIMVRLINKFNSSSSSLEEK+AALFDLEYYVHQMDNAQDLLSFGGLQVVINGLNSTE
Sbjct: 180  TDMQIMVRLINKFNSSSSSLEEKIAALFDLEYYVHQMDNAQDLLSFGGLQVVINGLNSTE 239

Query: 864  PLVKEYAAFALGAAFSSNPKVQVEAVEGGALQKLLVILATEQPLTAKKKVLFALCSLLRH 1043
            PLVKEYAAF LGAAFSSNPKVQVEA+EGGALQKLLVILATEQPLTAKKKVLFALCSLLRH
Sbjct: 240  PLVKEYAAFVLGAAFSSNPKVQVEAIEGGALQKLLVILATEQPLTAKKKVLFALCSLLRH 299

Query: 1044 FPYAQQQFLKLGGLQVLRSLVQEKGTEVLAVRVVTLLYDLVTEKMFAEEEAELTRETSPE 1223
            FPYAQ+QFLKLGGLQVLR+LVQEKGTEVLAVRVVTLLYDLVTEKMFAEEEAELT+E SPE
Sbjct: 300  FPYAQRQFLKLGGLQVLRTLVQEKGTEVLAVRVVTLLYDLVTEKMFAEEEAELTQEMSPE 359

Query: 1224 KLQQYRQVHLLPGLREQAWCEITAHLLALPEHDAREKVLQ 1343
            KLQQYRQVHLLPGL EQ WCEITAHLLALPEHDAREKVLQ
Sbjct: 360  KLQQYRQVHLLPGLWEQGWCEITAHLLALPEHDAREKVLQ 399


>ref|NP_036399.3| hsp70-binding protein 1 [Homo sapiens].
          Length = 359

 Score = 53.1 bits (126), Expect = 6e-07
 Identities = 42/142 (29%), Positives = 70/142 (49%), Gaps = 1/142 (0%)
 Frame = +3

Query: 744  EEKVAALFDLEYYVHQMDNAQDLLSFGGLQVVING-LNSTEPLVKEYAAFALGAAFSSNP 920
            +E+  AL  L      MDNA D     G+ +++   L +    ++  AA  +G    +  
Sbjct: 118  QEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVA 177

Query: 921  KVQVEAVEGGALQKLLVILATEQPLTAKKKVLFALCSLLRHFPYAQQQFLKLGGLQVLRS 1100
             +Q + +  GAL+KLL +L  +   T + K LFA+  L+R       QFL+L G  VL  
Sbjct: 178  AIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMR 237

Query: 1101 LVQEKGTEVLAVRVVTLLYDLV 1166
             +Q++  + L V+   LL +L+
Sbjct: 238  AMQQQ-VQKLKVKSAFLLQNLL 258


>ref|NP_001123578.1| hsp70-binding protein 1 [Homo sapiens].
          Length = 359

 Score = 53.1 bits (126), Expect = 6e-07
 Identities = 42/142 (29%), Positives = 70/142 (49%), Gaps = 1/142 (0%)
 Frame = +3

Query: 744  EEKVAALFDLEYYVHQMDNAQDLLSFGGLQVVING-LNSTEPLVKEYAAFALGAAFSSNP 920
            +E+  AL  L      MDNA D     G+ +++   L +    ++  AA  +G    +  
Sbjct: 118  QEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVA 177

Query: 921  KVQVEAVEGGALQKLLVILATEQPLTAKKKVLFALCSLLRHFPYAQQQFLKLGGLQVLRS 1100
             +Q + +  GAL+KLL +L  +   T + K LFA+  L+R       QFL+L G  VL  
Sbjct: 178  AIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMR 237

Query: 1101 LVQEKGTEVLAVRVVTLLYDLV 1166
             +Q++  + L V+   LL +L+
Sbjct: 238  AMQQQ-VQKLKVKSAFLLQNLL 258


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 49,701,177
Number of extensions: 1391864
Number of successful extensions: 8552
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 8426
Number of HSP's successfully gapped: 4
Length of query: 461
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 355
Effective length of database: 14,802,980
Effective search space: 5255057900
Effective search space used: 5255057900
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002662
         (1383 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_109674.2| nucleotide exchange factor SIL1 precursor [Mus ...   615   e-176
Alignment   gi|NP_077134.1| hsp70-binding protein 1 [Mus musculus].               54   4e-07

>ref|NP_109674.2| nucleotide exchange factor SIL1 precursor [Mus musculus].
          Length = 465

 Score =  615 bits (1587), Expect = e-176
 Identities = 320/400 (80%), Positives = 347/400 (86%), Gaps = 1/400 (0%)
 Frame = +3

Query: 147  QGLILLRMARLGILLGLLMAACFTFCLGRKDSE-LALTHPEESSTKETARKGSTAXXXXX 323
            Q L   RMA  G+LLGLL+ +C T CL  ++S   ALT+PE+S  +E+  K +       
Sbjct: 4    QHLPSTRMASPGMLLGLLLTSCLTLCLSCQNSNNFALTNPEKSIHQESDTKETREEEELD 63

Query: 324  XXXXXXFHPTHEWQALHPGQAVPAGSHVRLNLQTGAREVKLQDEDKFRSNLKGLKKGKRL 503
                  FHPT EWQ L PGQAVPAGSHVR+NLQTG  EVKLQ EDKF++NLKG K+G+RL
Sbjct: 64   TEILEVFHPTQEWQTLQPGQAVPAGSHVRMNLQTGVNEVKLQQEDKFQNNLKGFKRGRRL 123

Query: 504  DINTNTYTSQDLKSALAKFKEGAERENSKEDKERQAKVKRLFRPIEELKKDFEELNVVIE 683
            DIN NTYTSQDLKSALAKFKEG E ENSK++  RQA VK+LFRPIEELKK+F+ELNVV+E
Sbjct: 124  DINANTYTSQDLKSALAKFKEGTEMENSKDELARQATVKQLFRPIEELKKEFDELNVVLE 183

Query: 684  TDMQIMVRLINKFNSSSSSLEEKVAALFDLEYYVHQMDNAQDLLSFGGLQVVINGLNSTE 863
            TDMQIMVRLINKFNSSSSSLEEKVAALFDLEYYVHQMDNAQDLLSFGGLQVVINGLNSTE
Sbjct: 184  TDMQIMVRLINKFNSSSSSLEEKVAALFDLEYYVHQMDNAQDLLSFGGLQVVINGLNSTE 243

Query: 864  PLVKEYAAFALGAAFSSNPKVQVEAVEGGALQKLLVILATEQPLTAKKKVLFALCSLLRH 1043
            PLVKEYAAF LGAAFSSNPKVQVEA+EGGALQKLLVILAT QPL AKKKVLFALCSLLRH
Sbjct: 244  PLVKEYAAFVLGAAFSSNPKVQVEAIEGGALQKLLVILATNQPLPAKKKVLFALCSLLRH 303

Query: 1044 FPYAQQQFLKLGGLQVLRSLVQEKGTEVLAVRVVTLLYDLVTEKMFAEEEAELTRETSPE 1223
            FPYAQQQFLKLGGLQVLRSLVQEK  +VLAVRVVTLLYDLVTEKMFAEEEAELT+++SPE
Sbjct: 304  FPYAQQQFLKLGGLQVLRSLVQEKSAKVLAVRVVTLLYDLVTEKMFAEEEAELTQDSSPE 363

Query: 1224 KLQQYRQVHLLPGLREQAWCEITAHLLALPEHDAREKVLQ 1343
            KLQQYRQV LLPGL+EQ WCEITA LLALPEHDAREKVLQ
Sbjct: 364  KLQQYRQVQLLPGLQEQGWCEITAQLLALPEHDAREKVLQ 403


>ref|NP_077134.1| hsp70-binding protein 1 [Mus musculus].
          Length = 357

 Score = 53.5 bits (127), Expect = 4e-07
 Identities = 42/142 (29%), Positives = 70/142 (49%), Gaps = 1/142 (0%)
 Frame = +3

Query: 744  EEKVAALFDLEYYVHQMDNAQDLLSFGGLQVVING-LNSTEPLVKEYAAFALGAAFSSNP 920
            +E+  AL  L      MDNA D     G+ +++   L +    ++  AA  +G    +  
Sbjct: 116  QEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVA 175

Query: 921  KVQVEAVEGGALQKLLVILATEQPLTAKKKVLFALCSLLRHFPYAQQQFLKLGGLQVLRS 1100
             +Q + +  GAL+KLL +L  +   T + K LFA+  L+R       QFL+L G  VL  
Sbjct: 176  AIQEQVLGLGALRKLLRLLDRDSCDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMR 235

Query: 1101 LVQEKGTEVLAVRVVTLLYDLV 1166
             +Q++  + L V+   LL +L+
Sbjct: 236  AMQQQ-VQKLKVKSAFLLQNLL 256


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 41,861,261
Number of extensions: 1148989
Number of successful extensions: 6514
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 6421
Number of HSP's successfully gapped: 2
Length of query: 461
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 356
Effective length of database: 12,463,779
Effective search space: 4437105324
Effective search space used: 4437105324
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002662
         (1383 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_003124040.1| PREDICTED: nucleotide exchange factor SIL1-l...   461   e-130
Alignment   gi|XP_003361085.1| PREDICTED: nucleotide exchange factor SIL1-l...   167   1e-41
Alignment   gi|XP_003127516.2| PREDICTED: hsp70-binding protein 1-like [Sus...    53   4e-07

>ref|XP_003124040.1| PREDICTED: nucleotide exchange factor SIL1-like [Sus scrofa].
          Length = 362

 Score =  461 bits (1187), Expect = e-130
 Identities = 238/252 (94%), Positives = 238/252 (94%)
 Frame = +3

Query: 168 MARLGILLGLLMAACFTFCLGRKDSELALTHPEESSTKETARKGSTAXXXXXXXXXXXFH 347
           MARLGILLGLLMAACFTFCLGRKDSELALTHPEESSTKETARKGSTA           FH
Sbjct: 1   MARLGILLGLLMAACFTFCLGRKDSELALTHPEESSTKETARKGSTAEEELEPEVLEVFH 60

Query: 348 PTHEWQALHPGQAVPAGSHVRLNLQTGAREVKLQDEDKFRSNLKGLKKGKRLDINTNTYT 527
           PTHEWQALHPGQAVPAGSHVRLNLQTGAREVKLQDEDKFRSNLKGLKKGKRLDINTNTYT
Sbjct: 61  PTHEWQALHPGQAVPAGSHVRLNLQTGAREVKLQDEDKFRSNLKGLKKGKRLDINTNTYT 120

Query: 528 SQDLKSALAKFKEGAERENSKEDKERQAKVKRLFRPIEELKKDFEELNVVIETDMQIMVR 707
           SQDLKSALAKFKEGAERENSKEDKERQAKVKRLFRPIEELKKDFEELNVVIETDMQIMVR
Sbjct: 121 SQDLKSALAKFKEGAERENSKEDKERQAKVKRLFRPIEELKKDFEELNVVIETDMQIMVR 180

Query: 708 LINKFNSSSSSLEEKVAALFDLEYYVHQMDNAQDLLSFGGLQVVINGLNSTEPLVKEYAA 887
           LINKFNSSSSSLEEKVAALFDLEYYVHQMDNAQDLLSFGGLQVVINGLNSTEPLVKEYAA
Sbjct: 181 LINKFNSSSSSLEEKVAALFDLEYYVHQMDNAQDLLSFGGLQVVINGLNSTEPLVKEYAA 240

Query: 888 FALGAAFSSNPK 923
           F LGAAFSS  K
Sbjct: 241 FVLGAAFSSLSK 252


>ref|XP_003361085.1| PREDICTED: nucleotide exchange factor SIL1-like [Sus scrofa].
          Length = 407

 Score =  167 bits (423), Expect = 1e-41
 Identities = 87/89 (97%), Positives = 88/89 (98%)
 Frame = +3

Query: 909  SSNPKVQVEAVEGGALQKLLVILATEQPLTAKKKVLFALCSLLRHFPYAQQQFLKLGGLQ 1088
            + NPKVQVEAVEGGALQKLLVILATEQPLTAKKKVLFALCSLLRHFPYAQQQFLKLGGLQ
Sbjct: 20   AGNPKVQVEAVEGGALQKLLVILATEQPLTAKKKVLFALCSLLRHFPYAQQQFLKLGGLQ 79

Query: 1089 VLRSLVQEKGTEVLAVRVVTLLYDLVTEK 1175
            VLRSLVQEKGTEVLAVRVVTLLYDLVTEK
Sbjct: 80   VLRSLVQEKGTEVLAVRVVTLLYDLVTEK 108



 Score = 96.7 bits (239), Expect = 3e-20
 Identities = 45/46 (97%), Positives = 45/46 (97%)
 Frame = +3

Query: 1206 RETSPEKLQQYRQVHLLPGLREQAWCEITAHLLALPEHDAREKVLQ 1343
            RETSPEKLQQYRQVHLLPGLREQ WCEITAHLLALPEHDAREKVLQ
Sbjct: 300  RETSPEKLQQYRQVHLLPGLREQGWCEITAHLLALPEHDAREKVLQ 345


>ref|XP_003127516.2| PREDICTED: hsp70-binding protein 1-like [Sus scrofa].
          Length = 357

 Score = 53.1 bits (126), Expect = 4e-07
 Identities = 44/142 (30%), Positives = 66/142 (46%), Gaps = 1/142 (0%)
 Frame = +3

Query: 744  EEKVAALFDLEYYVHQMDNAQDLLSFGGLQVVINGLNSTEPLVKEYAAFALGAAFSSNPK 923
            +E+  AL  L      MDNA D     G+ +++       P    + A  L    S N  
Sbjct: 116  QEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGPAGLRWRAAQLIGTCSQNVA 175

Query: 924  VQVEAVEG-GALQKLLVILATEQPLTAKKKVLFALCSLLRHFPYAQQQFLKLGGLQVLRS 1100
               E V G GAL+KLL +L  +   + + K LFA+  L+R       QFL+L G  VL  
Sbjct: 176  AIQEQVLGLGALRKLLRLLDRDPCDSVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMR 235

Query: 1101 LVQEKGTEVLAVRVVTLLYDLV 1166
             +Q++  + L V+   LL +L+
Sbjct: 236  AMQQQ-VQKLKVKSAFLLQNLL 256


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 31,421,224
Number of extensions: 902425
Number of successful extensions: 5527
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 5468
Number of HSP's successfully gapped: 4
Length of query: 461
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 359
Effective length of database: 8,804,438
Effective search space: 3160793242
Effective search space used: 3160793242
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002662
         (1383 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr02                                                         385   e-104
gb|JH118618.1| Sus scrofa unplaced genomic scaffold ChrUScaf1321      297   8e-78

>Sscrofa_Chr02 
||          Length = 162569375

 Score =  385 bits (194), Expect = e-104
 Identities = 194/194 (100%)
 Strand = Plus / Plus

                                                                             
Query: 598       aggaaaggcaggccaaggttaaacggctcttccgccccatcgaggagctaaagaaggact 657
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146776403 aggaaaggcaggccaaggttaaacggctcttccgccccatcgaggagctaaagaaggact 146776462

                                                                             
Query: 658       tcgaggagctgaatgttgtcattgagactgacatgcagatcatggttcggctgatcaaca 717
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146776463 tcgaggagctgaatgttgtcattgagactgacatgcagatcatggttcggctgatcaaca 146776522

                                                                             
Query: 718       agttcaatagttcgagctccagcctggaggaaaaggttgctgcgctctttgatcttgaat 777
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146776523 agttcaatagttcgagctccagcctggaggaaaaggttgctgcgctctttgatcttgaat 146776582

                               
Query: 778       attacgtccatcag 791
                 ||||||||||||||
Sbjct: 146776583 attacgtccatcag 146776596



 Score =  385 bits (194), Expect = e-104
 Identities = 194/194 (100%)
 Strand = Plus / Plus

                                                                             
Query: 598       aggaaaggcaggccaaggttaaacggctcttccgccccatcgaggagctaaagaaggact 657
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146859029 aggaaaggcaggccaaggttaaacggctcttccgccccatcgaggagctaaagaaggact 146859088

                                                                             
Query: 658       tcgaggagctgaatgttgtcattgagactgacatgcagatcatggttcggctgatcaaca 717
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146859089 tcgaggagctgaatgttgtcattgagactgacatgcagatcatggttcggctgatcaaca 146859148

                                                                             
Query: 718       agttcaatagttcgagctccagcctggaggaaaaggttgctgcgctctttgatcttgaat 777
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146859149 agttcaatagttcgagctccagcctggaggaaaaggttgctgcgctctttgatcttgaat 146859208

                               
Query: 778       attacgtccatcag 791
                 ||||||||||||||
Sbjct: 146859209 attacgtccatcag 146859222



 Score =  341 bits (172), Expect = 6e-91
 Identities = 204/212 (96%), Gaps = 2/212 (0%)
 Strand = Plus / Plus

                                                                             
Query: 1174      agatgtttgctgaggaagaagccgagctgacccgggagacgtccccagagaagctgcagc 1233
                 |||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 146629501 agatgtttgctgaggaggaggccgagctgacccgggagacgtccccagagaagctgcagc 146629560

                                                                             
Query: 1234      agtatcgccaggtgcacctcctgccaggccttcgggaacaggcttggtgcgagatcactg 1293
                 ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||
Sbjct: 146629561 agtatcgccaggtgcacctcctgccaggccttcgggaacagggctggtgcgagatcactg 146629620

                                                                             
Query: 1294      cccacctcctggcactgccagagcacgatgcccgcgaaaaagtgctgcagacgctgggcg 1353
                 |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 146629621 cccacctcctggcactgccagagcacgatgcccgcgaaaaggtgctgcagacgctgggcg 146629680

                                                 
Query: 1354      ccctcctgggca-ctgccggga-cactaccgt 1383
                 ||||||||| || ||||||||| |||||||||
Sbjct: 146629681 ccctcctggccacctgccgggaccactaccgt 146629712



 Score =  276 bits (139), Expect = 3e-71
 Identities = 139/139 (100%)
 Strand = Plus / Minus

                                                                             
Query: 242       ggaacttgcactgacgcacccggaggagagcagcaccaaagaaacggcgagaaagggaag 301
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146889293 ggaacttgcactgacgcacccggaggagagcagcaccaaagaaacggcgagaaagggaag 146889234

                                                                             
Query: 302       cacagcagaggaggagctggagcctgaggtcctggaggtgttccacccgactcatgagtg 361
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146889233 cacagcagaggaggagctggagcctgaggtcctggaggtgttccacccgactcatgagtg 146889174

                                    
Query: 362       gcaggctcttcacccaggt 380
                 |||||||||||||||||||
Sbjct: 146889173 gcaggctcttcacccaggt 146889155



 Score =  254 bits (128), Expect = 1e-64
 Identities = 128/128 (100%)
 Strand = Plus / Minus

                                                                             
Query: 13        atagccgggcgcgcgcaagttctgaccgtggccgccgcgtctgcgcacggggagctggtt 72
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146952310 atagccgggcgcgcgcaagttctgaccgtggccgccgcgtctgcgcacggggagctggtt 146952251

                                                                             
Query: 73        gccgctgcggccgcctggaattgtggggtttgtgtctgcccctcggctgccgggcgggga 132
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146952250 gccgctgcggccgcctggaattgtggggtttgtgtctgcccctcggctgccgggcgggga 146952191

                         
Query: 133       gccgcagg 140
                 ||||||||
Sbjct: 146952190 gccgcagg 146952183



 Score =  246 bits (124), Expect = 3e-62
 Identities = 124/124 (100%)
 Strand = Plus / Plus

                                                                             
Query: 377       aggtcaggctgttcctgcaggatcccatgtgcggctgaatctccagactggggcaagaga 436
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146842333 aggtcaggctgttcctgcaggatcccatgtgcggctgaatctccagactggggcaagaga 146842392

                                                                             
Query: 437       agtgaaactccaagatgaggacaagtttcgaagcaatttgaaagggttgaaaaaaggcaa 496
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146842393 agtgaaactccaagatgaggacaagtttcgaagcaatttgaaagggttgaaaaaaggcaa 146842452

                     
Query: 497       aagg 500
                 ||||
Sbjct: 146842453 aagg 146842456



 Score =  240 bits (121), Expect = 2e-60
 Identities = 124/125 (99%)
 Strand = Plus / Minus

                                                                             
Query: 789       cagatggataatgcacaagacctgctttccttcggtggccttcaagtggtgatcaatggg 848
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146761992 cagatggataatgcacaagacctgctttccttcggtggccttcaagtggtgatcaatggg 146761933

                                                                             
Query: 849       ctgaacagcacagagcccctggtgaaggagtacgcggcctttgcgctgggagctgccttt 908
                 ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 146761932 ctgaacagcacagagcccctggtgaaggagtacgcggcctttgtgctgggagctgccttt 146761873

                      
Query: 909       tccag 913
                 |||||
Sbjct: 146761872 tccag 146761868



 Score =  240 bits (121), Expect = 2e-60
 Identities = 124/125 (99%)
 Strand = Plus / Minus

                                                                             
Query: 789       cagatggataatgcacaagacctgctttccttcggtggccttcaagtggtgatcaatggg 848
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146862592 cagatggataatgcacaagacctgctttccttcggtggccttcaagtggtgatcaatggg 146862533

                                                                             
Query: 849       ctgaacagcacagagcccctggtgaaggagtacgcggcctttgcgctgggagctgccttt 908
                 ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 146862532 ctgaacagcacagagcccctggtgaaggagtacgcggcctttgtgctgggagctgccttt 146862473

                      
Query: 909       tccag 913
                 |||||
Sbjct: 146862472 tccag 146862468



 Score =  212 bits (107), Expect = 4e-52
 Identities = 107/107 (100%)
 Strand = Plus / Minus

                                                                             
Query: 137       caggccttgccagggcctaatccttttgaggatggctcgtctgggcattctgctgggcct 196
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146896277 caggccttgccagggcctaatccttttgaggatggctcgtctgggcattctgctgggcct 146896218

                                                                
Query: 197       gctgatggccgcctgcttcaccttctgcctcggtcgtaaggactcgg 243
                 |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146896217 gctgatggccgcctgcttcaccttctgcctcggtcgtaaggactcgg 146896171



 Score =  204 bits (103), Expect = 9e-50
 Identities = 103/103 (100%)
 Strand = Plus / Plus

                                                                             
Query: 498       aggctggacatcaacaccaacacctatacatctcaggacctcaagagtgcgctggcaaaa 557
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146766452 aggctggacatcaacaccaacacctatacatctcaggacctcaagagtgcgctggcaaaa 146766511

                                                            
Query: 558       ttcaaggagggggcagagagggagaattccaaggaagacaagg 600
                 |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146766512 ttcaaggagggggcagagagggagaattccaaggaagacaagg 146766554



 Score =  204 bits (103), Expect = 9e-50
 Identities = 103/103 (100%)
 Strand = Plus / Plus

                                                                             
Query: 498       aggctggacatcaacaccaacacctatacatctcaggacctcaagagtgcgctggcaaaa 557
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146849078 aggctggacatcaacaccaacacctatacatctcaggacctcaagagtgcgctggcaaaa 146849137

                                                            
Query: 558       ttcaaggagggggcagagagggagaattccaaggaagacaagg 600
                 |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146849138 ttcaaggagggggcagagagggagaattccaaggaagacaagg 146849180


>gb|JH118618.1| Sus scrofa unplaced genomic scaffold ChrUScaf1321
          Length = 43806

 Score =  297 bits (150), Expect = 8e-78
 Identities = 176/182 (96%), Gaps = 2/182 (1%)
 Strand = Plus / Minus

                                                                         
Query: 1204  cccgggagacgtccccagagaagctgcagcagtatcgccaggtgcacctcctgccaggcc 1263
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21336 cccgggagacgtccccagagaagctgcagcagtatcgccaggtgcacctcctgccaggcc 21277

                                                                         
Query: 1264  ttcgggaacaggcttggtgcgagatcactgcccacctcctggcactgccagagcacgatg 1323
             ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21276 ttcgggaacagggctggtgcgagatcactgcccacctcctggcactgccagagcacgatg 21217

                                                                         
Query: 1324  cccgcgaaaaagtgctgcagacgctgggcgccctcctgggca-ctgccggga-cactacc 1381
             |||||||||| |||||||||||||||||||||||||||| || ||||||||| |||||||
Sbjct: 21216 cccgcgaaaaggtgctgcagacgctgggcgccctcctggccacctgccgggaccactacc 21157

               
Query: 1382  gt 1383
             ||
Sbjct: 21156 gt 21155



 Score =  289 bits (146), Expect = 2e-75
 Identities = 160/167 (95%)
 Strand = Plus / Minus

                                                                         
Query: 1009  aggtcctgtttgccctgtgctccctattacgacacttcccgtacgcccagcagcagttcc 1068
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25595 aggtcctgtttgccctgtgctccctattacgacacttcccgtacgcccagcagcagttcc 25536

                                                                         
Query: 1069  tgaagctnnnnnnnctgcaggtcctgaggagtctggtccaggagaagggcacggaggtgc 1128
             |||||||       ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25535 tgaagctgggggggctgcaggtcctgaggagtctggtccaggagaagggcacggaggtgc 25476

                                                            
Query: 1129  tggccgtgcgtgtggtcactctgctctacgacctggtcactgagaag 1175
             |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25475 tggccgtgcgtgtggtcactctgctctacgacctggtcactgagaag 25429



 Score =  204 bits (103), Expect = 9e-50
 Identities = 103/103 (100%)
 Strand = Plus / Minus

                                                                         
Query: 910   ccagcaacccaaaggtccaggtggaagccgtggaggggggagccctgcagaaattgctgg 969
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26113 ccagcaacccaaaggtccaggtggaagccgtggaggggggagccctgcagaaattgctgg 26054

                                                        
Query: 970   tcattctggccactgagcagcctctcactgcaaagaagaaggt 1012
             |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26053 tcattctggccactgagcagcctctcactgcaaagaagaaggt 26011


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 36,819,802
Number of extensions: 243
Number of successful extensions: 243
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 242
Number of HSP's successfully gapped: 14
Length of query: 1383
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1362
Effective length of database: 2,808,413,156
Effective search space: 3825058718472
Effective search space used: 3825058718472
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)