Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002662
(1383 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001069276.1| nucleotide exchange factor SIL1 precursor [B... 671 0.0
Alignment gi|NP_001039596.1| hsp70-binding protein 1 [Bos taurus]. 53 7e-07
>ref|NP_001069276.1| nucleotide exchange factor SIL1 precursor [Bos taurus].
Length = 462
Score = 671 bits (1730), Expect = 0.0
Identities = 346/401 (86%), Positives = 365/401 (91%)
Frame = +3
Query: 141 PCQGLILLRMARLGILLGLLMAACFTFCLGRKDSELALTHPEESSTKETARKGSTAXXXX 320
P QGL+L RMA L +LL +LM +CF FCL K+SE ALT+PE+SSTKET RK +
Sbjct: 2 PHQGLLLFRMAPLCVLLSMLMVSCFNFCLCHKNSEFALTNPEKSSTKETERKETEEELEP 61
Query: 321 XXXXXXXFHPTHEWQALHPGQAVPAGSHVRLNLQTGAREVKLQDEDKFRSNLKGLKKGKR 500
FHPTHEWQAL PGQAVPAGSHVRLNLQTGAREVKL DEDKF++NLKGLKKGKR
Sbjct: 62 KILEV--FHPTHEWQALRPGQAVPAGSHVRLNLQTGAREVKLHDEDKFQTNLKGLKKGKR 119
Query: 501 LDINTNTYTSQDLKSALAKFKEGAERENSKEDKERQAKVKRLFRPIEELKKDFEELNVVI 680
LDINTNTYTSQDLK+ALAKFKEGAE ENSKED+ERQAKVKRLFRPIEELKKDFEELNVVI
Sbjct: 120 LDINTNTYTSQDLKNALAKFKEGAEMENSKEDQERQAKVKRLFRPIEELKKDFEELNVVI 179
Query: 681 ETDMQIMVRLINKFNSSSSSLEEKVAALFDLEYYVHQMDNAQDLLSFGGLQVVINGLNST 860
ETDMQIMVRLINKFNSSSSSLEEK+AALFDLEYYVHQMDNAQDLLSFGGLQVVINGLNST
Sbjct: 180 ETDMQIMVRLINKFNSSSSSLEEKIAALFDLEYYVHQMDNAQDLLSFGGLQVVINGLNST 239
Query: 861 EPLVKEYAAFALGAAFSSNPKVQVEAVEGGALQKLLVILATEQPLTAKKKVLFALCSLLR 1040
EPLVKEYAAF LGAAFSSNPKVQVEA+EGGALQKLLVILATEQPLT KKK LFALCSLLR
Sbjct: 240 EPLVKEYAAFVLGAAFSSNPKVQVEAIEGGALQKLLVILATEQPLTTKKKALFALCSLLR 299
Query: 1041 HFPYAQQQFLKLGGLQVLRSLVQEKGTEVLAVRVVTLLYDLVTEKMFAEEEAELTRETSP 1220
HFPYAQQQFLKLGGLQVLRSLVQEKG EVLAVRVVTLLYDLVTEKMFAEE+AELT + SP
Sbjct: 300 HFPYAQQQFLKLGGLQVLRSLVQEKGMEVLAVRVVTLLYDLVTEKMFAEEDAELTWDMSP 359
Query: 1221 EKLQQYRQVHLLPGLREQAWCEITAHLLALPEHDAREKVLQ 1343
++LQQYRQVHLLP L+EQ WCEITAHLLALPEHDAREKVLQ
Sbjct: 360 KRLQQYRQVHLLPSLQEQGWCEITAHLLALPEHDAREKVLQ 400
>ref|NP_001039596.1| hsp70-binding protein 1 [Bos taurus].
Length = 357
Score = 52.8 bits (125), Expect = 7e-07
Identities = 44/142 (30%), Positives = 65/142 (45%), Gaps = 1/142 (0%)
Frame = +3
Query: 744 EEKVAALFDLEYYVHQMDNAQDLLSFGGLQVVINGLNSTEPLVKEYAAFALGAAFSSNPK 923
+E+ AL L MDNA D G+ +++ P + A L S N
Sbjct: 116 QEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGPAGLRWRAAQLIGTCSQNVA 175
Query: 924 VQVEAVEG-GALQKLLVILATEQPLTAKKKVLFALCSLLRHFPYAQQQFLKLGGLQVLRS 1100
E V G GAL+KLL +L + + K LFA+ L+R QFL+L G VL
Sbjct: 176 AIQEQVLGLGALRKLLRLLDRDPCDAVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMR 235
Query: 1101 LVQEKGTEVLAVRVVTLLYDLV 1166
+Q++ + L V+ LL +L+
Sbjct: 236 AMQQQ-VQKLKVKSAFLLQNLL 256
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 48,652,688
Number of extensions: 1394193
Number of successful extensions: 8792
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 8674
Number of HSP's successfully gapped: 2
Length of query: 461
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 355
Effective length of database: 14,174,046
Effective search space: 5031786330
Effective search space used: 5031786330
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002662
(1383 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_531925.2| PREDICTED: similar to endoplasmic reticulum cha... 676 0.0
Alignment gi|XP_533584.1| PREDICTED: similar to hsp70-interacting protein... 53 8e-07
>ref|XP_531925.2| PREDICTED: similar to endoplasmic reticulum chaperone SIL1, homolog
of yeast [Canis familiaris].
Length = 475
Score = 676 bits (1745), Expect = 0.0
Identities = 353/410 (86%), Positives = 369/410 (90%), Gaps = 11/410 (2%)
Frame = +3
Query: 147 QGLILLRMARLGILLGLLMAACFTFCLGRKD-----------SELALTHPEESSTKETAR 293
QGL RMA LG+LLGLLMA+CFTFCL ++ E ALT PE+SSTKE R
Sbjct: 4 QGLPPSRMALLGMLLGLLMASCFTFCLSHQNPWVTPCVFLSLKEFALTSPEKSSTKEAER 63
Query: 294 KGSTAXXXXXXXXXXXFHPTHEWQALHPGQAVPAGSHVRLNLQTGAREVKLQDEDKFRSN 473
K +TA FHPT+EWQAL PGQAVP GSHVRLNLQTGAREVKLQ+EDK+R+N
Sbjct: 64 KDTTAEEELDSEVLEVFHPTYEWQALRPGQAVPVGSHVRLNLQTGAREVKLQEEDKYRNN 123
Query: 474 LKGLKKGKRLDINTNTYTSQDLKSALAKFKEGAERENSKEDKERQAKVKRLFRPIEELKK 653
LKGL+KGKRLDINTNTYTSQDLKSALAKFKEGAE E+SKEDK RQAKVKRLFRPIEELKK
Sbjct: 124 LKGLRKGKRLDINTNTYTSQDLKSALAKFKEGAEVESSKEDKARQAKVKRLFRPIEELKK 183
Query: 654 DFEELNVVIETDMQIMVRLINKFNSSSSSLEEKVAALFDLEYYVHQMDNAQDLLSFGGLQ 833
DFEELNVVIETDMQIMVRLINKFNSSSSSLEEK+AALFDLEYYVHQMDNAQDLLSFGGLQ
Sbjct: 184 DFEELNVVIETDMQIMVRLINKFNSSSSSLEEKIAALFDLEYYVHQMDNAQDLLSFGGLQ 243
Query: 834 VVINGLNSTEPLVKEYAAFALGAAFSSNPKVQVEAVEGGALQKLLVILATEQPLTAKKKV 1013
VVINGLNSTEPLVKEYAAF LGAAFSSNPKVQVEA+EGGALQKLLVILATEQPLTAKKKV
Sbjct: 244 VVINGLNSTEPLVKEYAAFVLGAAFSSNPKVQVEAIEGGALQKLLVILATEQPLTAKKKV 303
Query: 1014 LFALCSLLRHFPYAQQQFLKLGGLQVLRSLVQEKGTEVLAVRVVTLLYDLVTEKMFAEEE 1193
LFALCSLLRHFPYAQQQFLKLGGLQVLRSLVQ KGTEVLAVRVVTLLYDLVTEKMFAEEE
Sbjct: 304 LFALCSLLRHFPYAQQQFLKLGGLQVLRSLVQAKGTEVLAVRVVTLLYDLVTEKMFAEEE 363
Query: 1194 AELTRETSPEKLQQYRQVHLLPGLREQAWCEITAHLLALPEHDAREKVLQ 1343
AELT+E+SPEKLQQYRQVHLLPGLREQ WCEITAHLLALPEHDAREKVLQ
Sbjct: 364 AELTQESSPEKLQQYRQVHLLPGLREQGWCEITAHLLALPEHDAREKVLQ 413
>ref|XP_533584.1| PREDICTED: similar to hsp70-interacting protein [Canis familiaris].
Length = 357
Score = 52.8 bits (125), Expect = 8e-07
Identities = 44/142 (30%), Positives = 65/142 (45%), Gaps = 1/142 (0%)
Frame = +3
Query: 744 EEKVAALFDLEYYVHQMDNAQDLLSFGGLQVVINGLNSTEPLVKEYAAFALGAAFSSNPK 923
+E+ AL L MDNA D G+ +++ P + A L S N
Sbjct: 116 QEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGPAGLRWRAAQLIGTCSQNVA 175
Query: 924 VQVEAVEG-GALQKLLVILATEQPLTAKKKVLFALCSLLRHFPYAQQQFLKLGGLQVLRS 1100
E V G GAL+KLL +L + + K LFA+ L+R QFL+L G VL
Sbjct: 176 AIQEQVLGLGALRKLLRLLDRDPCDLVRVKALFAISCLVREQEVGLLQFLRLDGFSVLMR 235
Query: 1101 LVQEKGTEVLAVRVVTLLYDLV 1166
+Q++ + L V+ LL +L+
Sbjct: 236 AMQQQ-VQKLKVKSAFLLQNLL 256
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 50,808,567
Number of extensions: 1438102
Number of successful extensions: 9573
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 9385
Number of HSP's successfully gapped: 2
Length of query: 461
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 355
Effective length of database: 15,340,888
Effective search space: 5446015240
Effective search space used: 5446015240
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002662
(1383 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_071909.1| nucleotide exchange factor SIL1 precursor [Homo... 660 0.0
Alignment gi|NP_001032722.1| nucleotide exchange factor SIL1 precursor [H... 660 0.0
Alignment gi|NP_036399.3| hsp70-binding protein 1 [Homo sapiens]. 53 6e-07
Alignment gi|NP_001123578.1| hsp70-binding protein 1 [Homo sapiens]. 53 6e-07
>ref|NP_071909.1| nucleotide exchange factor SIL1 precursor [Homo sapiens].
Length = 461
Score = 660 bits (1704), Expect = 0.0
Identities = 347/400 (86%), Positives = 362/400 (90%), Gaps = 1/400 (0%)
Frame = +3
Query: 147 QGLILLRMARLGILLGLLMAACFTFCLGRKD-SELALTHPEESSTKETARKGSTAXXXXX 323
Q L RMA LG+LLGLLMAACFTFCL ++ E ALT+PE+SSTKET RK + A
Sbjct: 4 QSLPSSRMAPLGMLLGLLMAACFTFCLSHQNLKEFALTNPEKSSTKETERKETKAEEELD 63
Query: 324 XXXXXXFHPTHEWQALHPGQAVPAGSHVRLNLQTGAREVKLQDEDKFRSNLKGLKKGKRL 503
FHPTHEWQAL PGQAVPAGSHVRLNLQTG RE KLQ EDKFR+NLKG KRL
Sbjct: 64 AEVLEVFHPTHEWQALQPGQAVPAGSHVRLNLQTGEREAKLQYEDKFRNNLKG----KRL 119
Query: 504 DINTNTYTSQDLKSALAKFKEGAERENSKEDKERQAKVKRLFRPIEELKKDFEELNVVIE 683
DINTNTYTSQDLKSALAKFKEGAE E+SKEDK RQA+VKRLFRPIEELKKDF+ELNVVIE
Sbjct: 120 DINTNTYTSQDLKSALAKFKEGAEMESSKEDKARQAEVKRLFRPIEELKKDFDELNVVIE 179
Query: 684 TDMQIMVRLINKFNSSSSSLEEKVAALFDLEYYVHQMDNAQDLLSFGGLQVVINGLNSTE 863
TDMQIMVRLINKFNSSSSSLEEK+AALFDLEYYVHQMDNAQDLLSFGGLQVVINGLNSTE
Sbjct: 180 TDMQIMVRLINKFNSSSSSLEEKIAALFDLEYYVHQMDNAQDLLSFGGLQVVINGLNSTE 239
Query: 864 PLVKEYAAFALGAAFSSNPKVQVEAVEGGALQKLLVILATEQPLTAKKKVLFALCSLLRH 1043
PLVKEYAAF LGAAFSSNPKVQVEA+EGGALQKLLVILATEQPLTAKKKVLFALCSLLRH
Sbjct: 240 PLVKEYAAFVLGAAFSSNPKVQVEAIEGGALQKLLVILATEQPLTAKKKVLFALCSLLRH 299
Query: 1044 FPYAQQQFLKLGGLQVLRSLVQEKGTEVLAVRVVTLLYDLVTEKMFAEEEAELTRETSPE 1223
FPYAQ+QFLKLGGLQVLR+LVQEKGTEVLAVRVVTLLYDLVTEKMFAEEEAELT+E SPE
Sbjct: 300 FPYAQRQFLKLGGLQVLRTLVQEKGTEVLAVRVVTLLYDLVTEKMFAEEEAELTQEMSPE 359
Query: 1224 KLQQYRQVHLLPGLREQAWCEITAHLLALPEHDAREKVLQ 1343
KLQQYRQVHLLPGL EQ WCEITAHLLALPEHDAREKVLQ
Sbjct: 360 KLQQYRQVHLLPGLWEQGWCEITAHLLALPEHDAREKVLQ 399
>ref|NP_001032722.1| nucleotide exchange factor SIL1 precursor [Homo sapiens].
Length = 461
Score = 660 bits (1704), Expect = 0.0
Identities = 347/400 (86%), Positives = 362/400 (90%), Gaps = 1/400 (0%)
Frame = +3
Query: 147 QGLILLRMARLGILLGLLMAACFTFCLGRKD-SELALTHPEESSTKETARKGSTAXXXXX 323
Q L RMA LG+LLGLLMAACFTFCL ++ E ALT+PE+SSTKET RK + A
Sbjct: 4 QSLPSSRMAPLGMLLGLLMAACFTFCLSHQNLKEFALTNPEKSSTKETERKETKAEEELD 63
Query: 324 XXXXXXFHPTHEWQALHPGQAVPAGSHVRLNLQTGAREVKLQDEDKFRSNLKGLKKGKRL 503
FHPTHEWQAL PGQAVPAGSHVRLNLQTG RE KLQ EDKFR+NLKG KRL
Sbjct: 64 AEVLEVFHPTHEWQALQPGQAVPAGSHVRLNLQTGEREAKLQYEDKFRNNLKG----KRL 119
Query: 504 DINTNTYTSQDLKSALAKFKEGAERENSKEDKERQAKVKRLFRPIEELKKDFEELNVVIE 683
DINTNTYTSQDLKSALAKFKEGAE E+SKEDK RQA+VKRLFRPIEELKKDF+ELNVVIE
Sbjct: 120 DINTNTYTSQDLKSALAKFKEGAEMESSKEDKARQAEVKRLFRPIEELKKDFDELNVVIE 179
Query: 684 TDMQIMVRLINKFNSSSSSLEEKVAALFDLEYYVHQMDNAQDLLSFGGLQVVINGLNSTE 863
TDMQIMVRLINKFNSSSSSLEEK+AALFDLEYYVHQMDNAQDLLSFGGLQVVINGLNSTE
Sbjct: 180 TDMQIMVRLINKFNSSSSSLEEKIAALFDLEYYVHQMDNAQDLLSFGGLQVVINGLNSTE 239
Query: 864 PLVKEYAAFALGAAFSSNPKVQVEAVEGGALQKLLVILATEQPLTAKKKVLFALCSLLRH 1043
PLVKEYAAF LGAAFSSNPKVQVEA+EGGALQKLLVILATEQPLTAKKKVLFALCSLLRH
Sbjct: 240 PLVKEYAAFVLGAAFSSNPKVQVEAIEGGALQKLLVILATEQPLTAKKKVLFALCSLLRH 299
Query: 1044 FPYAQQQFLKLGGLQVLRSLVQEKGTEVLAVRVVTLLYDLVTEKMFAEEEAELTRETSPE 1223
FPYAQ+QFLKLGGLQVLR+LVQEKGTEVLAVRVVTLLYDLVTEKMFAEEEAELT+E SPE
Sbjct: 300 FPYAQRQFLKLGGLQVLRTLVQEKGTEVLAVRVVTLLYDLVTEKMFAEEEAELTQEMSPE 359
Query: 1224 KLQQYRQVHLLPGLREQAWCEITAHLLALPEHDAREKVLQ 1343
KLQQYRQVHLLPGL EQ WCEITAHLLALPEHDAREKVLQ
Sbjct: 360 KLQQYRQVHLLPGLWEQGWCEITAHLLALPEHDAREKVLQ 399
>ref|NP_036399.3| hsp70-binding protein 1 [Homo sapiens].
Length = 359
Score = 53.1 bits (126), Expect = 6e-07
Identities = 42/142 (29%), Positives = 70/142 (49%), Gaps = 1/142 (0%)
Frame = +3
Query: 744 EEKVAALFDLEYYVHQMDNAQDLLSFGGLQVVING-LNSTEPLVKEYAAFALGAAFSSNP 920
+E+ AL L MDNA D G+ +++ L + ++ AA +G +
Sbjct: 118 QEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVA 177
Query: 921 KVQVEAVEGGALQKLLVILATEQPLTAKKKVLFALCSLLRHFPYAQQQFLKLGGLQVLRS 1100
+Q + + GAL+KLL +L + T + K LFA+ L+R QFL+L G VL
Sbjct: 178 AIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMR 237
Query: 1101 LVQEKGTEVLAVRVVTLLYDLV 1166
+Q++ + L V+ LL +L+
Sbjct: 238 AMQQQ-VQKLKVKSAFLLQNLL 258
>ref|NP_001123578.1| hsp70-binding protein 1 [Homo sapiens].
Length = 359
Score = 53.1 bits (126), Expect = 6e-07
Identities = 42/142 (29%), Positives = 70/142 (49%), Gaps = 1/142 (0%)
Frame = +3
Query: 744 EEKVAALFDLEYYVHQMDNAQDLLSFGGLQVVING-LNSTEPLVKEYAAFALGAAFSSNP 920
+E+ AL L MDNA D G+ +++ L + ++ AA +G +
Sbjct: 118 QEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVA 177
Query: 921 KVQVEAVEGGALQKLLVILATEQPLTAKKKVLFALCSLLRHFPYAQQQFLKLGGLQVLRS 1100
+Q + + GAL+KLL +L + T + K LFA+ L+R QFL+L G VL
Sbjct: 178 AIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMR 237
Query: 1101 LVQEKGTEVLAVRVVTLLYDLV 1166
+Q++ + L V+ LL +L+
Sbjct: 238 AMQQQ-VQKLKVKSAFLLQNLL 258
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 49,701,177
Number of extensions: 1391864
Number of successful extensions: 8552
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 8426
Number of HSP's successfully gapped: 4
Length of query: 461
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 355
Effective length of database: 14,802,980
Effective search space: 5255057900
Effective search space used: 5255057900
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002662
(1383 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_109674.2| nucleotide exchange factor SIL1 precursor [Mus ... 615 e-176
Alignment gi|NP_077134.1| hsp70-binding protein 1 [Mus musculus]. 54 4e-07
>ref|NP_109674.2| nucleotide exchange factor SIL1 precursor [Mus musculus].
Length = 465
Score = 615 bits (1587), Expect = e-176
Identities = 320/400 (80%), Positives = 347/400 (86%), Gaps = 1/400 (0%)
Frame = +3
Query: 147 QGLILLRMARLGILLGLLMAACFTFCLGRKDSE-LALTHPEESSTKETARKGSTAXXXXX 323
Q L RMA G+LLGLL+ +C T CL ++S ALT+PE+S +E+ K +
Sbjct: 4 QHLPSTRMASPGMLLGLLLTSCLTLCLSCQNSNNFALTNPEKSIHQESDTKETREEEELD 63
Query: 324 XXXXXXFHPTHEWQALHPGQAVPAGSHVRLNLQTGAREVKLQDEDKFRSNLKGLKKGKRL 503
FHPT EWQ L PGQAVPAGSHVR+NLQTG EVKLQ EDKF++NLKG K+G+RL
Sbjct: 64 TEILEVFHPTQEWQTLQPGQAVPAGSHVRMNLQTGVNEVKLQQEDKFQNNLKGFKRGRRL 123
Query: 504 DINTNTYTSQDLKSALAKFKEGAERENSKEDKERQAKVKRLFRPIEELKKDFEELNVVIE 683
DIN NTYTSQDLKSALAKFKEG E ENSK++ RQA VK+LFRPIEELKK+F+ELNVV+E
Sbjct: 124 DINANTYTSQDLKSALAKFKEGTEMENSKDELARQATVKQLFRPIEELKKEFDELNVVLE 183
Query: 684 TDMQIMVRLINKFNSSSSSLEEKVAALFDLEYYVHQMDNAQDLLSFGGLQVVINGLNSTE 863
TDMQIMVRLINKFNSSSSSLEEKVAALFDLEYYVHQMDNAQDLLSFGGLQVVINGLNSTE
Sbjct: 184 TDMQIMVRLINKFNSSSSSLEEKVAALFDLEYYVHQMDNAQDLLSFGGLQVVINGLNSTE 243
Query: 864 PLVKEYAAFALGAAFSSNPKVQVEAVEGGALQKLLVILATEQPLTAKKKVLFALCSLLRH 1043
PLVKEYAAF LGAAFSSNPKVQVEA+EGGALQKLLVILAT QPL AKKKVLFALCSLLRH
Sbjct: 244 PLVKEYAAFVLGAAFSSNPKVQVEAIEGGALQKLLVILATNQPLPAKKKVLFALCSLLRH 303
Query: 1044 FPYAQQQFLKLGGLQVLRSLVQEKGTEVLAVRVVTLLYDLVTEKMFAEEEAELTRETSPE 1223
FPYAQQQFLKLGGLQVLRSLVQEK +VLAVRVVTLLYDLVTEKMFAEEEAELT+++SPE
Sbjct: 304 FPYAQQQFLKLGGLQVLRSLVQEKSAKVLAVRVVTLLYDLVTEKMFAEEEAELTQDSSPE 363
Query: 1224 KLQQYRQVHLLPGLREQAWCEITAHLLALPEHDAREKVLQ 1343
KLQQYRQV LLPGL+EQ WCEITA LLALPEHDAREKVLQ
Sbjct: 364 KLQQYRQVQLLPGLQEQGWCEITAQLLALPEHDAREKVLQ 403
>ref|NP_077134.1| hsp70-binding protein 1 [Mus musculus].
Length = 357
Score = 53.5 bits (127), Expect = 4e-07
Identities = 42/142 (29%), Positives = 70/142 (49%), Gaps = 1/142 (0%)
Frame = +3
Query: 744 EEKVAALFDLEYYVHQMDNAQDLLSFGGLQVVING-LNSTEPLVKEYAAFALGAAFSSNP 920
+E+ AL L MDNA D G+ +++ L + ++ AA +G +
Sbjct: 116 QEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVA 175
Query: 921 KVQVEAVEGGALQKLLVILATEQPLTAKKKVLFALCSLLRHFPYAQQQFLKLGGLQVLRS 1100
+Q + + GAL+KLL +L + T + K LFA+ L+R QFL+L G VL
Sbjct: 176 AIQEQVLGLGALRKLLRLLDRDSCDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMR 235
Query: 1101 LVQEKGTEVLAVRVVTLLYDLV 1166
+Q++ + L V+ LL +L+
Sbjct: 236 AMQQQ-VQKLKVKSAFLLQNLL 256
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 41,861,261
Number of extensions: 1148989
Number of successful extensions: 6514
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 6421
Number of HSP's successfully gapped: 2
Length of query: 461
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 356
Effective length of database: 12,463,779
Effective search space: 4437105324
Effective search space used: 4437105324
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002662
(1383 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003124040.1| PREDICTED: nucleotide exchange factor SIL1-l... 461 e-130
Alignment gi|XP_003361085.1| PREDICTED: nucleotide exchange factor SIL1-l... 167 1e-41
Alignment gi|XP_003127516.2| PREDICTED: hsp70-binding protein 1-like [Sus... 53 4e-07
>ref|XP_003124040.1| PREDICTED: nucleotide exchange factor SIL1-like [Sus scrofa].
Length = 362
Score = 461 bits (1187), Expect = e-130
Identities = 238/252 (94%), Positives = 238/252 (94%)
Frame = +3
Query: 168 MARLGILLGLLMAACFTFCLGRKDSELALTHPEESSTKETARKGSTAXXXXXXXXXXXFH 347
MARLGILLGLLMAACFTFCLGRKDSELALTHPEESSTKETARKGSTA FH
Sbjct: 1 MARLGILLGLLMAACFTFCLGRKDSELALTHPEESSTKETARKGSTAEEELEPEVLEVFH 60
Query: 348 PTHEWQALHPGQAVPAGSHVRLNLQTGAREVKLQDEDKFRSNLKGLKKGKRLDINTNTYT 527
PTHEWQALHPGQAVPAGSHVRLNLQTGAREVKLQDEDKFRSNLKGLKKGKRLDINTNTYT
Sbjct: 61 PTHEWQALHPGQAVPAGSHVRLNLQTGAREVKLQDEDKFRSNLKGLKKGKRLDINTNTYT 120
Query: 528 SQDLKSALAKFKEGAERENSKEDKERQAKVKRLFRPIEELKKDFEELNVVIETDMQIMVR 707
SQDLKSALAKFKEGAERENSKEDKERQAKVKRLFRPIEELKKDFEELNVVIETDMQIMVR
Sbjct: 121 SQDLKSALAKFKEGAERENSKEDKERQAKVKRLFRPIEELKKDFEELNVVIETDMQIMVR 180
Query: 708 LINKFNSSSSSLEEKVAALFDLEYYVHQMDNAQDLLSFGGLQVVINGLNSTEPLVKEYAA 887
LINKFNSSSSSLEEKVAALFDLEYYVHQMDNAQDLLSFGGLQVVINGLNSTEPLVKEYAA
Sbjct: 181 LINKFNSSSSSLEEKVAALFDLEYYVHQMDNAQDLLSFGGLQVVINGLNSTEPLVKEYAA 240
Query: 888 FALGAAFSSNPK 923
F LGAAFSS K
Sbjct: 241 FVLGAAFSSLSK 252
>ref|XP_003361085.1| PREDICTED: nucleotide exchange factor SIL1-like [Sus scrofa].
Length = 407
Score = 167 bits (423), Expect = 1e-41
Identities = 87/89 (97%), Positives = 88/89 (98%)
Frame = +3
Query: 909 SSNPKVQVEAVEGGALQKLLVILATEQPLTAKKKVLFALCSLLRHFPYAQQQFLKLGGLQ 1088
+ NPKVQVEAVEGGALQKLLVILATEQPLTAKKKVLFALCSLLRHFPYAQQQFLKLGGLQ
Sbjct: 20 AGNPKVQVEAVEGGALQKLLVILATEQPLTAKKKVLFALCSLLRHFPYAQQQFLKLGGLQ 79
Query: 1089 VLRSLVQEKGTEVLAVRVVTLLYDLVTEK 1175
VLRSLVQEKGTEVLAVRVVTLLYDLVTEK
Sbjct: 80 VLRSLVQEKGTEVLAVRVVTLLYDLVTEK 108
Score = 96.7 bits (239), Expect = 3e-20
Identities = 45/46 (97%), Positives = 45/46 (97%)
Frame = +3
Query: 1206 RETSPEKLQQYRQVHLLPGLREQAWCEITAHLLALPEHDAREKVLQ 1343
RETSPEKLQQYRQVHLLPGLREQ WCEITAHLLALPEHDAREKVLQ
Sbjct: 300 RETSPEKLQQYRQVHLLPGLREQGWCEITAHLLALPEHDAREKVLQ 345
>ref|XP_003127516.2| PREDICTED: hsp70-binding protein 1-like [Sus scrofa].
Length = 357
Score = 53.1 bits (126), Expect = 4e-07
Identities = 44/142 (30%), Positives = 66/142 (46%), Gaps = 1/142 (0%)
Frame = +3
Query: 744 EEKVAALFDLEYYVHQMDNAQDLLSFGGLQVVINGLNSTEPLVKEYAAFALGAAFSSNPK 923
+E+ AL L MDNA D G+ +++ P + A L S N
Sbjct: 116 QEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGPAGLRWRAAQLIGTCSQNVA 175
Query: 924 VQVEAVEG-GALQKLLVILATEQPLTAKKKVLFALCSLLRHFPYAQQQFLKLGGLQVLRS 1100
E V G GAL+KLL +L + + + K LFA+ L+R QFL+L G VL
Sbjct: 176 AIQEQVLGLGALRKLLRLLDRDPCDSVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMR 235
Query: 1101 LVQEKGTEVLAVRVVTLLYDLV 1166
+Q++ + L V+ LL +L+
Sbjct: 236 AMQQQ-VQKLKVKSAFLLQNLL 256
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 31,421,224
Number of extensions: 902425
Number of successful extensions: 5527
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 5468
Number of HSP's successfully gapped: 4
Length of query: 461
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 359
Effective length of database: 8,804,438
Effective search space: 3160793242
Effective search space used: 3160793242
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002662
(1383 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 385 e-104
gb|JH118618.1| Sus scrofa unplaced genomic scaffold ChrUScaf1321 297 8e-78
>Sscrofa_Chr02
|| Length = 162569375
Score = 385 bits (194), Expect = e-104
Identities = 194/194 (100%)
Strand = Plus / Plus
Query: 598 aggaaaggcaggccaaggttaaacggctcttccgccccatcgaggagctaaagaaggact 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146776403 aggaaaggcaggccaaggttaaacggctcttccgccccatcgaggagctaaagaaggact 146776462
Query: 658 tcgaggagctgaatgttgtcattgagactgacatgcagatcatggttcggctgatcaaca 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146776463 tcgaggagctgaatgttgtcattgagactgacatgcagatcatggttcggctgatcaaca 146776522
Query: 718 agttcaatagttcgagctccagcctggaggaaaaggttgctgcgctctttgatcttgaat 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146776523 agttcaatagttcgagctccagcctggaggaaaaggttgctgcgctctttgatcttgaat 146776582
Query: 778 attacgtccatcag 791
||||||||||||||
Sbjct: 146776583 attacgtccatcag 146776596
Score = 385 bits (194), Expect = e-104
Identities = 194/194 (100%)
Strand = Plus / Plus
Query: 598 aggaaaggcaggccaaggttaaacggctcttccgccccatcgaggagctaaagaaggact 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146859029 aggaaaggcaggccaaggttaaacggctcttccgccccatcgaggagctaaagaaggact 146859088
Query: 658 tcgaggagctgaatgttgtcattgagactgacatgcagatcatggttcggctgatcaaca 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146859089 tcgaggagctgaatgttgtcattgagactgacatgcagatcatggttcggctgatcaaca 146859148
Query: 718 agttcaatagttcgagctccagcctggaggaaaaggttgctgcgctctttgatcttgaat 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146859149 agttcaatagttcgagctccagcctggaggaaaaggttgctgcgctctttgatcttgaat 146859208
Query: 778 attacgtccatcag 791
||||||||||||||
Sbjct: 146859209 attacgtccatcag 146859222
Score = 341 bits (172), Expect = 6e-91
Identities = 204/212 (96%), Gaps = 2/212 (0%)
Strand = Plus / Plus
Query: 1174 agatgtttgctgaggaagaagccgagctgacccgggagacgtccccagagaagctgcagc 1233
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 146629501 agatgtttgctgaggaggaggccgagctgacccgggagacgtccccagagaagctgcagc 146629560
Query: 1234 agtatcgccaggtgcacctcctgccaggccttcgggaacaggcttggtgcgagatcactg 1293
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 146629561 agtatcgccaggtgcacctcctgccaggccttcgggaacagggctggtgcgagatcactg 146629620
Query: 1294 cccacctcctggcactgccagagcacgatgcccgcgaaaaagtgctgcagacgctgggcg 1353
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 146629621 cccacctcctggcactgccagagcacgatgcccgcgaaaaggtgctgcagacgctgggcg 146629680
Query: 1354 ccctcctgggca-ctgccggga-cactaccgt 1383
||||||||| || ||||||||| |||||||||
Sbjct: 146629681 ccctcctggccacctgccgggaccactaccgt 146629712
Score = 276 bits (139), Expect = 3e-71
Identities = 139/139 (100%)
Strand = Plus / Minus
Query: 242 ggaacttgcactgacgcacccggaggagagcagcaccaaagaaacggcgagaaagggaag 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146889293 ggaacttgcactgacgcacccggaggagagcagcaccaaagaaacggcgagaaagggaag 146889234
Query: 302 cacagcagaggaggagctggagcctgaggtcctggaggtgttccacccgactcatgagtg 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146889233 cacagcagaggaggagctggagcctgaggtcctggaggtgttccacccgactcatgagtg 146889174
Query: 362 gcaggctcttcacccaggt 380
|||||||||||||||||||
Sbjct: 146889173 gcaggctcttcacccaggt 146889155
Score = 254 bits (128), Expect = 1e-64
Identities = 128/128 (100%)
Strand = Plus / Minus
Query: 13 atagccgggcgcgcgcaagttctgaccgtggccgccgcgtctgcgcacggggagctggtt 72
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146952310 atagccgggcgcgcgcaagttctgaccgtggccgccgcgtctgcgcacggggagctggtt 146952251
Query: 73 gccgctgcggccgcctggaattgtggggtttgtgtctgcccctcggctgccgggcgggga 132
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146952250 gccgctgcggccgcctggaattgtggggtttgtgtctgcccctcggctgccgggcgggga 146952191
Query: 133 gccgcagg 140
||||||||
Sbjct: 146952190 gccgcagg 146952183
Score = 246 bits (124), Expect = 3e-62
Identities = 124/124 (100%)
Strand = Plus / Plus
Query: 377 aggtcaggctgttcctgcaggatcccatgtgcggctgaatctccagactggggcaagaga 436
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146842333 aggtcaggctgttcctgcaggatcccatgtgcggctgaatctccagactggggcaagaga 146842392
Query: 437 agtgaaactccaagatgaggacaagtttcgaagcaatttgaaagggttgaaaaaaggcaa 496
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146842393 agtgaaactccaagatgaggacaagtttcgaagcaatttgaaagggttgaaaaaaggcaa 146842452
Query: 497 aagg 500
||||
Sbjct: 146842453 aagg 146842456
Score = 240 bits (121), Expect = 2e-60
Identities = 124/125 (99%)
Strand = Plus / Minus
Query: 789 cagatggataatgcacaagacctgctttccttcggtggccttcaagtggtgatcaatggg 848
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146761992 cagatggataatgcacaagacctgctttccttcggtggccttcaagtggtgatcaatggg 146761933
Query: 849 ctgaacagcacagagcccctggtgaaggagtacgcggcctttgcgctgggagctgccttt 908
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 146761932 ctgaacagcacagagcccctggtgaaggagtacgcggcctttgtgctgggagctgccttt 146761873
Query: 909 tccag 913
|||||
Sbjct: 146761872 tccag 146761868
Score = 240 bits (121), Expect = 2e-60
Identities = 124/125 (99%)
Strand = Plus / Minus
Query: 789 cagatggataatgcacaagacctgctttccttcggtggccttcaagtggtgatcaatggg 848
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146862592 cagatggataatgcacaagacctgctttccttcggtggccttcaagtggtgatcaatggg 146862533
Query: 849 ctgaacagcacagagcccctggtgaaggagtacgcggcctttgcgctgggagctgccttt 908
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 146862532 ctgaacagcacagagcccctggtgaaggagtacgcggcctttgtgctgggagctgccttt 146862473
Query: 909 tccag 913
|||||
Sbjct: 146862472 tccag 146862468
Score = 212 bits (107), Expect = 4e-52
Identities = 107/107 (100%)
Strand = Plus / Minus
Query: 137 caggccttgccagggcctaatccttttgaggatggctcgtctgggcattctgctgggcct 196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146896277 caggccttgccagggcctaatccttttgaggatggctcgtctgggcattctgctgggcct 146896218
Query: 197 gctgatggccgcctgcttcaccttctgcctcggtcgtaaggactcgg 243
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146896217 gctgatggccgcctgcttcaccttctgcctcggtcgtaaggactcgg 146896171
Score = 204 bits (103), Expect = 9e-50
Identities = 103/103 (100%)
Strand = Plus / Plus
Query: 498 aggctggacatcaacaccaacacctatacatctcaggacctcaagagtgcgctggcaaaa 557
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146766452 aggctggacatcaacaccaacacctatacatctcaggacctcaagagtgcgctggcaaaa 146766511
Query: 558 ttcaaggagggggcagagagggagaattccaaggaagacaagg 600
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146766512 ttcaaggagggggcagagagggagaattccaaggaagacaagg 146766554
Score = 204 bits (103), Expect = 9e-50
Identities = 103/103 (100%)
Strand = Plus / Plus
Query: 498 aggctggacatcaacaccaacacctatacatctcaggacctcaagagtgcgctggcaaaa 557
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146849078 aggctggacatcaacaccaacacctatacatctcaggacctcaagagtgcgctggcaaaa 146849137
Query: 558 ttcaaggagggggcagagagggagaattccaaggaagacaagg 600
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146849138 ttcaaggagggggcagagagggagaattccaaggaagacaagg 146849180
>gb|JH118618.1| Sus scrofa unplaced genomic scaffold ChrUScaf1321
Length = 43806
Score = 297 bits (150), Expect = 8e-78
Identities = 176/182 (96%), Gaps = 2/182 (1%)
Strand = Plus / Minus
Query: 1204 cccgggagacgtccccagagaagctgcagcagtatcgccaggtgcacctcctgccaggcc 1263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21336 cccgggagacgtccccagagaagctgcagcagtatcgccaggtgcacctcctgccaggcc 21277
Query: 1264 ttcgggaacaggcttggtgcgagatcactgcccacctcctggcactgccagagcacgatg 1323
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21276 ttcgggaacagggctggtgcgagatcactgcccacctcctggcactgccagagcacgatg 21217
Query: 1324 cccgcgaaaaagtgctgcagacgctgggcgccctcctgggca-ctgccggga-cactacc 1381
|||||||||| |||||||||||||||||||||||||||| || ||||||||| |||||||
Sbjct: 21216 cccgcgaaaaggtgctgcagacgctgggcgccctcctggccacctgccgggaccactacc 21157
Query: 1382 gt 1383
||
Sbjct: 21156 gt 21155
Score = 289 bits (146), Expect = 2e-75
Identities = 160/167 (95%)
Strand = Plus / Minus
Query: 1009 aggtcctgtttgccctgtgctccctattacgacacttcccgtacgcccagcagcagttcc 1068
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25595 aggtcctgtttgccctgtgctccctattacgacacttcccgtacgcccagcagcagttcc 25536
Query: 1069 tgaagctnnnnnnnctgcaggtcctgaggagtctggtccaggagaagggcacggaggtgc 1128
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25535 tgaagctgggggggctgcaggtcctgaggagtctggtccaggagaagggcacggaggtgc 25476
Query: 1129 tggccgtgcgtgtggtcactctgctctacgacctggtcactgagaag 1175
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25475 tggccgtgcgtgtggtcactctgctctacgacctggtcactgagaag 25429
Score = 204 bits (103), Expect = 9e-50
Identities = 103/103 (100%)
Strand = Plus / Minus
Query: 910 ccagcaacccaaaggtccaggtggaagccgtggaggggggagccctgcagaaattgctgg 969
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26113 ccagcaacccaaaggtccaggtggaagccgtggaggggggagccctgcagaaattgctgg 26054
Query: 970 tcattctggccactgagcagcctctcactgcaaagaagaaggt 1012
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26053 tcattctggccactgagcagcctctcactgcaaagaagaaggt 26011
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 36,819,802
Number of extensions: 243
Number of successful extensions: 243
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 242
Number of HSP's successfully gapped: 14
Length of query: 1383
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1362
Effective length of database: 2,808,413,156
Effective search space: 3825058718472
Effective search space used: 3825058718472
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)