Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002672
(991 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002703190.1| PREDICTED: cytochrome P450, family 3, subfam... 373 e-104
Alignment gi|NP_001092837.1| cytochrome P450, family 3, subfamily A, poly... 370 e-103
Alignment gi|NP_001069356.1| cytochrome P450, family 3, subfamily A, poly... 368 e-103
Alignment gi|NP_776956.2| cytochrome P450 3A28 [Bos taurus]. 365 e-101
Alignment gi|XP_002698187.1| PREDICTED: similar to cytochrome P450 CYP3A2... 259 2e-70
Alignment gi|NP_001039492.1| thromboxane-A synthase [Bos taurus]. 118 9e-27
Alignment gi|XP_595414.4| PREDICTED: hypothetical protein [Bos taurus]. 45 1e-06
Alignment gi|NP_001070278.1| cholesterol 24-hydroxylase [Bos taurus]. 49 5e-06
>ref|XP_002703190.1| PREDICTED: cytochrome P450, family 3, subfamily A, polypeptide
4-like [Bos taurus].
Length = 503
Score = 373 bits (958), Expect(2) = e-104
Identities = 180/271 (66%), Positives = 209/271 (77%)
Frame = +3
Query: 81 MDLIPGFSTETWXXXXXXXXXXXXXGTYSHGLFKKLGIPGPRPLPYFGNILGYRKGVDHF 260
M+LIP FS ETW GTYSHGLFKKLG+PGPRPLPYFGN+L YRKGV F
Sbjct: 1 MELIPSFSMETWVLLSISLVLLYLYGTYSHGLFKKLGVPGPRPLPYFGNVLSYRKGVCEF 60
Query: 261 DKKCFQQYGKMWGVYDGRQPLLAVTDPNMIKSVLVKECYSVFTNRRSFGPLGAMRNALSL 440
D++CF++YGKMWG+++G+ PLL +TDP++IK+VLVKECYSVFTNR+ FGP G M+NA+S+
Sbjct: 61 DEECFKKYGKMWGIFEGKHPLLVITDPDVIKTVLVKECYSVFTNRKVFGPRGIMKNAVSV 120
Query: 441 AEDEEWKRIRTLLSPTFTSGKLKEMFPIISHYGDLLVSNLRKEAEKGKPVTMKDIFGAYS 620
AEDE+WKRIRTLLSP FTSGKLKEMFPII YGD+LV NLRKEAEKGK V MK++FGAYS
Sbjct: 121 AEDEQWKRIRTLLSPAFTSGKLKEMFPIIGKYGDVLVRNLRKEAEKGKSVNMKEVFGAYS 180
Query: 621 MDVITSTAFGVNIDSLNNPQDPFVENXXXXXXXXXXXXXXXXXXXXXXXXXXXEVLNITL 800
MDVITST+FGVNIDSL NPQDPFVEN +VLNIT+
Sbjct: 181 MDVITSTSFGVNIDSLGNPQDPFVENAKKLLRFDILNPFLLSVVLFPFLVPILDVLNITI 240
Query: 801 FPKSSVNFFTKSVKRMKESRLTDQQKGKWTF 893
FPKS+VNFFTKSVKR+KESRL D QK + F
Sbjct: 241 FPKSAVNFFTKSVKRIKESRLKDNQKPRVDF 271
Score = 25.4 bits (54), Expect(2) = e-104
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +1
Query: 922 KEMEPPKNRSKEKLVAQGIIFIF 990
KE + K S ++L+AQ IIFIF
Sbjct: 282 KETDNHKALSDQELIAQSIIFIF 304
>ref|NP_001092837.1| cytochrome P450, family 3, subfamily A, polypeptide 4 [Bos taurus].
Length = 503
Score = 370 bits (951), Expect(2) = e-103
Identities = 182/271 (67%), Positives = 210/271 (77%)
Frame = +3
Query: 81 MDLIPGFSTETWXXXXXXXXXXXXXGTYSHGLFKKLGIPGPRPLPYFGNILGYRKGVDHF 260
M+LI FSTETW GTYS+GLFKKLG+PGPRPLPYFGNIL YRKGV F
Sbjct: 1 MELILSFSTETWVLLATGLVLLYLYGTYSYGLFKKLGVPGPRPLPYFGNILSYRKGVCEF 60
Query: 261 DKKCFQQYGKMWGVYDGRQPLLAVTDPNMIKSVLVKECYSVFTNRRSFGPLGAMRNALSL 440
+++CF++YGK+WG+++G+QPLL +TDP+MIK+VLVKECYSVFTNRR FGP G M+NA+S+
Sbjct: 61 NEECFKKYGKIWGIFEGKQPLLVITDPDMIKTVLVKECYSVFTNRRVFGPSGVMKNAISV 120
Query: 441 AEDEEWKRIRTLLSPTFTSGKLKEMFPIISHYGDLLVSNLRKEAEKGKPVTMKDIFGAYS 620
AEDE+WKRIRTLLSPTFTSGKLKEMFPII YGD+LV NLRKEAEKG V +KDIFGAYS
Sbjct: 121 AEDEQWKRIRTLLSPTFTSGKLKEMFPIIGKYGDVLVRNLRKEAEKGTSVDIKDIFGAYS 180
Query: 621 MDVITSTAFGVNIDSLNNPQDPFVENXXXXXXXXXXXXXXXXXXXXXXXXXXXEVLNITL 800
MDVITST+FGVNIDSL+NPQDPFVEN +VLNIT+
Sbjct: 181 MDVITSTSFGVNIDSLSNPQDPFVENVKKLLRFSILDPFLLAVVLFPFLVPILDVLNITI 240
Query: 801 FPKSSVNFFTKSVKRMKESRLTDQQKGKWTF 893
FPKS VNFFTKSVKR+KESRL D QK + F
Sbjct: 241 FPKSVVNFFTKSVKRIKESRLKDNQKPRVDF 271
Score = 25.4 bits (54), Expect(2) = e-103
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +1
Query: 922 KEMEPPKNRSKEKLVAQGIIFIF 990
KE + K S ++L+AQ IIFIF
Sbjct: 282 KETDNHKALSDQELIAQSIIFIF 304
>ref|NP_001069356.1| cytochrome P450, family 3, subfamily A, polypeptide 5 [Bos taurus].
Length = 503
Score = 368 bits (944), Expect(2) = e-103
Identities = 178/271 (65%), Positives = 207/271 (76%)
Frame = +3
Query: 81 MDLIPGFSTETWXXXXXXXXXXXXXGTYSHGLFKKLGIPGPRPLPYFGNILGYRKGVDHF 260
M+LIP FS ETW GTYSHGLFKKLG+PGPRPLP FGN+L YRKGV F
Sbjct: 1 MELIPNFSVETWVLLAISLVLLYLYGTYSHGLFKKLGVPGPRPLPLFGNVLSYRKGVCEF 60
Query: 261 DKKCFQQYGKMWGVYDGRQPLLAVTDPNMIKSVLVKECYSVFTNRRSFGPLGAMRNALSL 440
D++CF++YGKMWG+++G+ PLL +TDP+MIK+VLVKECYSVFTNRR FGP+G M+NA+S+
Sbjct: 61 DEECFKKYGKMWGIFEGKHPLLVITDPDMIKTVLVKECYSVFTNRRVFGPMGVMKNAVSV 120
Query: 441 AEDEEWKRIRTLLSPTFTSGKLKEMFPIISHYGDLLVSNLRKEAEKGKPVTMKDIFGAYS 620
AEDE+WKRIRTLLSPTFTSGKLKEMFPII YGD+LV NLRKEAEKG V MK++FGAYS
Sbjct: 121 AEDEQWKRIRTLLSPTFTSGKLKEMFPIIGKYGDVLVRNLRKEAEKGTSVDMKEVFGAYS 180
Query: 621 MDVITSTAFGVNIDSLNNPQDPFVENXXXXXXXXXXXXXXXXXXXXXXXXXXXEVLNITL 800
MDVITST+FGVNIDSL NPQDPFVEN EVLNI++
Sbjct: 181 MDVITSTSFGVNIDSLGNPQDPFVENAKKLLRFDILDPFLLSVVLFPFLIPIFEVLNISI 240
Query: 801 FPKSSVNFFTKSVKRMKESRLTDQQKGKWTF 893
FPKS+VNF T SVK++KESRL D QK + F
Sbjct: 241 FPKSAVNFLTTSVKKIKESRLKDTQKPRVDF 271
Score = 25.8 bits (55), Expect(2) = e-103
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = +2
Query: 875 KGQVDLLHLMNNSQNSKK 928
K +VD L LM NSQNSK+
Sbjct: 266 KPRVDFLQLMINSQNSKE 283
>ref|NP_776956.2| cytochrome P450 3A28 [Bos taurus].
Length = 507
Score = 365 bits (938), Expect(2) = e-101
Identities = 176/268 (65%), Positives = 205/268 (76%)
Frame = +3
Query: 81 MDLIPGFSTETWXXXXXXXXXXXXXGTYSHGLFKKLGIPGPRPLPYFGNILGYRKGVDHF 260
M+LIP FS ETW GTYS+GLFKKLGIPGPRP+PYFG+ + Y KG+ F
Sbjct: 1 MELIPSFSMETWVLLATSLVLLYIYGTYSYGLFKKLGIPGPRPVPYFGSTMAYHKGIPEF 60
Query: 261 DKKCFQQYGKMWGVYDGRQPLLAVTDPNMIKSVLVKECYSVFTNRRSFGPLGAMRNALSL 440
D +CF++YGKMWG Y+GRQP+LA+TDP++IK+VLVKECYSVFTNRR FGP+G M+ A+SL
Sbjct: 61 DNQCFKKYGKMWGFYEGRQPMLAITDPDIIKTVLVKECYSVFTNRRIFGPMGIMKYAISL 120
Query: 441 AEDEEWKRIRTLLSPTFTSGKLKEMFPIISHYGDLLVSNLRKEAEKGKPVTMKDIFGAYS 620
A DE+WKRIRTLLSP FTSGKLKEMFPII YGD+LV NLRKEAEKG PV MKD+FGAYS
Sbjct: 121 AWDEQWKRIRTLLSPAFTSGKLKEMFPIIGQYGDMLVRNLRKEAEKGNPVNMKDMFGAYS 180
Query: 621 MDVITSTAFGVNIDSLNNPQDPFVENXXXXXXXXXXXXXXXXXXXXXXXXXXXEVLNITL 800
MDVIT TAFGVNIDSLNNP DPFVE+ E+LNITL
Sbjct: 181 MDVITGTAFGVNIDSLNNPHDPFVEHSKNLLRFRPFDPFILSIILFPFLNPVFEILNITL 240
Query: 801 FPKSSVNFFTKSVKRMKESRLTDQQKGK 884
FPKS+V+FFTKSVK++KESRLTD+Q +
Sbjct: 241 FPKSTVDFFTKSVKKIKESRLTDKQMNR 268
Score = 22.7 bits (47), Expect(2) = e-101
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +1
Query: 922 KEMEPPKNRSKEKLVAQGIIFIF 990
KE++ K S +LVAQ IFIF
Sbjct: 282 KEIDNHKALSDIELVAQSTIFIF 304
>ref|XP_002698187.1| PREDICTED: similar to cytochrome P450 CYP3A24 [Bos taurus].
Length = 452
Score = 259 bits (662), Expect(2) = 2e-70
Identities = 143/271 (52%), Positives = 159/271 (58%)
Frame = +3
Query: 81 MDLIPGFSTETWXXXXXXXXXXXXXGTYSHGLFKKLGIPGPRPLPYFGNILGYRKGVDHF 260
M+LIP FS ETW GTYSHGLFKKLG+PGPRPLPYFGN
Sbjct: 1 MELIPSFSMETWVLLSISLVLLYLYGTYSHGLFKKLGVPGPRPLPYFGN----------- 49
Query: 261 DKKCFQQYGKMWGVYDGRQPLLAVTDPNMIKSVLVKECYSVFTNRRSFGPLGAMRNALSL 440
V + R+ FGP G M+NA+S+
Sbjct: 50 ----------------------------------------VLSYRKVFGPRGIMKNAVSV 69
Query: 441 AEDEEWKRIRTLLSPTFTSGKLKEMFPIISHYGDLLVSNLRKEAEKGKPVTMKDIFGAYS 620
AEDE+WKRIRTLLSP FTSGKLKEMFPII YGD+LV NLRKEAEKGK V MK++FGAYS
Sbjct: 70 AEDEQWKRIRTLLSPAFTSGKLKEMFPIIGKYGDVLVRNLRKEAEKGKSVNMKEVFGAYS 129
Query: 621 MDVITSTAFGVNIDSLNNPQDPFVENXXXXXXXXXXXXXXXXXXXXXXXXXXXEVLNITL 800
MDVITST+FGVNIDSL NPQDPFVEN EVLNIT+
Sbjct: 130 MDVITSTSFGVNIDSLGNPQDPFVENAKKLLRFDILNPFLLSVVLFPFLVPIFEVLNITM 189
Query: 801 FPKSSVNFFTKSVKRMKESRLTDQQKGKWTF 893
FPKS+VNF KSVKR+KESRL D QK + F
Sbjct: 190 FPKSAVNFLAKSVKRIKESRLKDNQKPRVDF 220
Score = 25.8 bits (55), Expect(2) = 2e-70
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = +2
Query: 875 KGQVDLLHLMNNSQNSKK 928
K +VD L LM NSQNSK+
Sbjct: 215 KPRVDFLQLMINSQNSKE 232
>ref|NP_001039492.1| thromboxane-A synthase [Bos taurus].
Length = 533
Score = 118 bits (295), Expect = 9e-27
Identities = 64/182 (35%), Positives = 109/182 (59%), Gaps = 2/182 (1%)
Frame = +3
Query: 159 TYSHGLFKKLGIPGPRPLPYFGNILGYRKGVDHFDKKCFQQYGKMWGVYDGRQPLLAVTD 338
T + +KLGI P+P P+ GN+ +R+G + +QYG + G Y GR + +++
Sbjct: 33 TSAFSRLEKLGIRHPKPSPFIGNLAFFRQGFWESHMELRKQYGPLSGYYLGRLMFIVISE 92
Query: 339 PNMIKSVLVKECYSVFTNRRSFG--PLGAMRNALSLAEDEEWKRIRTLLSPTFTSGKLKE 512
P+MI+ VLV++ +S FTNR + G P + L L D+ W+ +R++L+ F+ KL E
Sbjct: 93 PDMIEQVLVEK-FSNFTNRMATGLEPKPVADSVLFL-RDKRWEEVRSVLTVAFSPEKLSE 150
Query: 513 MFPIISHYGDLLVSNLRKEAEKGKPVTMKDIFGAYSMDVITSTAFGVNIDSLNNPQDPFV 692
M P+IS D+L+++L + A+ G+ ++ + Y+ DV+ S AFG ++S P+ PFV
Sbjct: 151 MTPLISRACDVLLAHLERHAQSGEAFDIQRTYCCYTTDVVASVAFGTEVNSQEAPEHPFV 210
Query: 693 EN 698
E+
Sbjct: 211 EH 212
>ref|XP_595414.4| PREDICTED: hypothetical protein [Bos taurus].
Length = 264
Score = 45.1 bits (105), Expect(2) = 1e-06
Identities = 21/32 (65%), Positives = 25/32 (78%)
Frame = +3
Query: 798 LFPKSSVNFFTKSVKRMKESRLTDQQKGKWTF 893
+FPKS+VNF KSVKR+KESRL D QK + F
Sbjct: 1 MFPKSAVNFLAKSVKRIKESRLKDNQKPRVDF 32
Score = 25.8 bits (55), Expect(2) = 1e-06
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = +2
Query: 875 KGQVDLLHLMNNSQNSKK 928
K +VD L LM NSQNSK+
Sbjct: 27 KPRVDFLQLMINSQNSKE 44
>ref|NP_001070278.1| cholesterol 24-hydroxylase [Bos taurus].
Length = 501
Score = 49.3 bits (116), Expect = 5e-06
Identities = 44/181 (24%), Positives = 76/181 (41%), Gaps = 16/181 (8%)
Frame = +3
Query: 192 IPGPRPLPYFGNILGYRKGVDHFDKKC-----------FQQYGKMWGVYDGRQPLLAVTD 338
IPGP P P F +LG+ D+ C ++YG + V + + VT
Sbjct: 34 IPGP-PRPSF--LLGHLPYFWKKDEVCGRVLQDVFLDWAKKYGPVVRVNVFHKTSVIVTS 90
Query: 339 PNMIKSVLVKECYSVFTN-----RRSFGPLGAMRNALSLAEDEEWKRIRTLLSPTFTSGK 503
P +K L+ Y+ + + FG + +S + E W + R ++ F+
Sbjct: 91 PESVKKFLMSTKYNKDSKMYHAIQTVFGERLFGQGLVSECDYERWHKQRRIMDLAFSRSS 150
Query: 504 LKEMFPIISHYGDLLVSNLRKEAEKGKPVTMKDIFGAYSMDVITSTAFGVNIDSLNNPQD 683
L + + + LV L +A+ PV+M+D+ +MD++ AFG+ L Q
Sbjct: 151 LVGLMGTFNEKAEQLVEILEAQADGQTPVSMQDMLTCATMDILAKAAFGMETSMLLGAQK 210
Query: 684 P 686
P
Sbjct: 211 P 211
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 37,510,382
Number of extensions: 993463
Number of successful extensions: 2529
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 2514
Number of HSP's successfully gapped: 15
Length of query: 330
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 227
Effective length of database: 14,273,310
Effective search space: 3240041370
Effective search space used: 3240041370
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002672
(991 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_536868.2| PREDICTED: hypothetical protein XP_536868 [Cani... 372 e-104
Alignment gi|XP_546969.2| PREDICTED: similar to cytochrome P450, subfamil... 372 e-103
Alignment gi|NP_001003340.1| cytochrome P450 3A12 [Canis lupus familiaris]. 359 e-100
Alignment gi|NP_001003338.1| cytochrome P450 3A26 [Canis lupus familiaris]. 358 e-100
Alignment gi|XP_851720.1| PREDICTED: cytochrome P-450 3A12, partial [Cani... 213 1e-56
Alignment gi|XP_539887.2| PREDICTED: similar to Thromboxane-A synthase (T... 115 5e-26
Alignment gi|XP_541606.2| PREDICTED: similar to Cytochrome P450 2G1 (CYPI... 52 7e-07
Alignment gi|XP_855301.1| PREDICTED: similar to cytochrome P450, family 2... 49 1e-05
>ref|XP_536868.2| PREDICTED: hypothetical protein XP_536868 [Canis familiaris].
Length = 503
Score = 372 bits (955), Expect(2) = e-104
Identities = 183/271 (67%), Positives = 207/271 (76%)
Frame = +3
Query: 81 MDLIPGFSTETWXXXXXXXXXXXXXGTYSHGLFKKLGIPGPRPLPYFGNILGYRKGVDHF 260
MDLIP FS ETW GTY+HG+FKKLGIPGP PLP+ G LGYRKG F
Sbjct: 1 MDLIPSFSMETWLLLATSLVLLYLYGTYTHGVFKKLGIPGPTPLPFVGTALGYRKGFSVF 60
Query: 261 DKKCFQQYGKMWGVYDGRQPLLAVTDPNMIKSVLVKECYSVFTNRRSFGPLGAMRNALSL 440
D+ CF++YG+MWG YDGRQP+LA+TDP+MIK+VLVKECYSVFTNRRSFGP+G M++A+SL
Sbjct: 61 DENCFRKYGRMWGFYDGRQPVLAITDPDMIKTVLVKECYSVFTNRRSFGPVGFMKSAISL 120
Query: 441 AEDEEWKRIRTLLSPTFTSGKLKEMFPIISHYGDLLVSNLRKEAEKGKPVTMKDIFGAYS 620
+EDEEWKRIRTLLSPTFTSGKLKEMFPII YGD+LV NLRKEAEKGK + +KDIFGAYS
Sbjct: 121 SEDEEWKRIRTLLSPTFTSGKLKEMFPIIGQYGDVLVRNLRKEAEKGKSINLKDIFGAYS 180
Query: 621 MDVITSTAFGVNIDSLNNPQDPFVENXXXXXXXXXXXXXXXXXXXXXXXXXXXEVLNITL 800
MDVITST+FGVNIDSLNNPQDPFVEN EVLNI L
Sbjct: 181 MDVITSTSFGVNIDSLNNPQDPFVENIKKLLKFDFLDPFFFSILLFPFLTPVFEVLNIWL 240
Query: 801 FPKSSVNFFTKSVKRMKESRLTDQQKGKWTF 893
FPKS +FFTKSVKRMKE+RL D+QK + F
Sbjct: 241 FPKSVTDFFTKSVKRMKENRLKDKQKHRVDF 271
Score = 24.3 bits (51), Expect(2) = e-104
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = +1
Query: 922 KEMEPPKNRSKEKLVAQGIIFIF 990
KE + K S +LVAQ IIFIF
Sbjct: 282 KETDTHKALSDLELVAQSIIFIF 304
>ref|XP_546969.2| PREDICTED: similar to cytochrome P450, subfamily IIIA, polypeptide
4 [Canis familiaris].
Length = 503
Score = 372 bits (954), Expect(2) = e-103
Identities = 181/271 (66%), Positives = 208/271 (76%)
Frame = +3
Query: 81 MDLIPGFSTETWXXXXXXXXXXXXXGTYSHGLFKKLGIPGPRPLPYFGNILGYRKGVDHF 260
MDLIP FSTETW GTY+HGLFKKLGIPGP PLP+ G +LGYR G F
Sbjct: 1 MDLIPSFSTETWLLLATSLVLFYLYGTYTHGLFKKLGIPGPTPLPFLGTVLGYRNGFCDF 60
Query: 261 DKKCFQQYGKMWGVYDGRQPLLAVTDPNMIKSVLVKECYSVFTNRRSFGPLGAMRNALSL 440
D+KCF++YG+MWG YDGRQP+LA+ DP+MIK+VLVKECYSVFTNRRSFGP+G M++A+++
Sbjct: 61 DEKCFRKYGRMWGFYDGRQPVLAIMDPDMIKTVLVKECYSVFTNRRSFGPVGFMKSAITV 120
Query: 441 AEDEEWKRIRTLLSPTFTSGKLKEMFPIISHYGDLLVSNLRKEAEKGKPVTMKDIFGAYS 620
+EDEEWKRIRTLLSPTFTSGKLKEMFPII YGD+LV NLRKEAEKGK +++KDIFGAYS
Sbjct: 121 SEDEEWKRIRTLLSPTFTSGKLKEMFPIIGQYGDMLVRNLRKEAEKGKAISLKDIFGAYS 180
Query: 621 MDVITSTAFGVNIDSLNNPQDPFVENXXXXXXXXXXXXXXXXXXXXXXXXXXXEVLNITL 800
MDVITST+FGVNIDSLNNPQDPFVEN E+LNI L
Sbjct: 181 MDVITSTSFGVNIDSLNNPQDPFVENAKKLLKFDFPDPFLLSIILFPFLTPLYEMLNIWL 240
Query: 801 FPKSSVNFFTKSVKRMKESRLTDQQKGKWTF 893
FPK +FFTKSVKRMKESRL D+QK + F
Sbjct: 241 FPKKITDFFTKSVKRMKESRLKDKQKHRVDF 271
Score = 23.1 bits (48), Expect(2) = e-103
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +1
Query: 922 KEMEPPKNRSKEKLVAQGIIFI 987
KEM K S +LVAQ IIF+
Sbjct: 282 KEMNTHKALSDLELVAQSIIFV 303
>ref|NP_001003340.1| cytochrome P450 3A12 [Canis lupus familiaris].
Length = 503
Score = 359 bits (922), Expect(2) = e-100
Identities = 174/271 (64%), Positives = 204/271 (75%)
Frame = +3
Query: 81 MDLIPGFSTETWXXXXXXXXXXXXXGTYSHGLFKKLGIPGPRPLPYFGNILGYRKGVDHF 260
MDLIP FSTETW GTY+HG+F+KLGIPGP PLP+ G LGYR G F
Sbjct: 1 MDLIPSFSTETWLLLAISLVLLYLYGTYTHGIFRKLGIPGPTPLPFVGTALGYRNGFYVF 60
Query: 261 DKKCFQQYGKMWGVYDGRQPLLAVTDPNMIKSVLVKECYSVFTNRRSFGPLGAMRNALSL 440
D KCF +YG+MWG YDGRQP+LA+TDP+MIK+VLVKECYSVFTNRR+ GP+G M++A+SL
Sbjct: 61 DMKCFSKYGRMWGFYDGRQPVLAITDPDMIKTVLVKECYSVFTNRRTLGPVGFMKSAISL 120
Query: 441 AEDEEWKRIRTLLSPTFTSGKLKEMFPIISHYGDLLVSNLRKEAEKGKPVTMKDIFGAYS 620
+EDEEWKR+RTLLSPTFT+GKLKEMFPII YGD+LV+NLRKEAEKGK + +KD+FGAYS
Sbjct: 121 SEDEEWKRMRTLLSPTFTTGKLKEMFPIIGQYGDVLVNNLRKEAEKGKAINLKDVFGAYS 180
Query: 621 MDVITSTAFGVNIDSLNNPQDPFVENXXXXXXXXXXXXXXXXXXXXXXXXXXXEVLNITL 800
MDVITST+FGVNIDSLN+PQDPFVEN E+LNI L
Sbjct: 181 MDVITSTSFGVNIDSLNHPQDPFVENTKKLLKFDFLDPFFFSILLFPFLTPVFEILNIWL 240
Query: 801 FPKSSVNFFTKSVKRMKESRLTDQQKGKWTF 893
FPK +FF KSV+RMKESRL D+QK + F
Sbjct: 241 FPKKVTDFFRKSVERMKESRLKDKQKHRVDF 271
Score = 26.6 bits (57), Expect(2) = e-100
Identities = 14/23 (60%), Positives = 16/23 (69%)
Frame = +1
Query: 922 KEMEPPKNRSKEKLVAQGIIFIF 990
KEM+ K S +LVAQ IIFIF
Sbjct: 282 KEMDTHKALSDLELVAQSIIFIF 304
>ref|NP_001003338.1| cytochrome P450 3A26 [Canis lupus familiaris].
Length = 503
Score = 358 bits (919), Expect(2) = e-100
Identities = 174/271 (64%), Positives = 203/271 (74%)
Frame = +3
Query: 81 MDLIPGFSTETWXXXXXXXXXXXXXGTYSHGLFKKLGIPGPRPLPYFGNILGYRKGVDHF 260
MDLIP FSTETW GTY+HG+F+KLGIPGP PLP+ G LGYR G F
Sbjct: 1 MDLIPSFSTETWLLLAISLVLLYLYGTYTHGIFRKLGIPGPTPLPFVGTALGYRNGFYVF 60
Query: 261 DKKCFQQYGKMWGVYDGRQPLLAVTDPNMIKSVLVKECYSVFTNRRSFGPLGAMRNALSL 440
D KCF +YG+MWG YDGRQP+LA+TDP+MIK+VLVKECYSVFTNRR+ GP+G M++A+SL
Sbjct: 61 DMKCFSKYGRMWGFYDGRQPVLAITDPDMIKTVLVKECYSVFTNRRTLGPVGFMKSAISL 120
Query: 441 AEDEEWKRIRTLLSPTFTSGKLKEMFPIISHYGDLLVSNLRKEAEKGKPVTMKDIFGAYS 620
+EDEEWKRIRTLLSPTFT+GKLKEMFPII YGD+LV+NLRKEAEKGK + +KD+FGAYS
Sbjct: 121 SEDEEWKRIRTLLSPTFTTGKLKEMFPIIGQYGDVLVNNLRKEAEKGKAINLKDVFGAYS 180
Query: 621 MDVITSTAFGVNIDSLNNPQDPFVENXXXXXXXXXXXXXXXXXXXXXXXXXXXEVLNITL 800
MDVITS +FGVNIDSLN+PQDPFVEN E+LNI L
Sbjct: 181 MDVITSISFGVNIDSLNHPQDPFVENTKNLLKFDFLDPFLFSILLFPFLTPVFEILNIWL 240
Query: 801 FPKSSVNFFTKSVKRMKESRLTDQQKGKWTF 893
FPK +FF KSV+RMKESRL D+QK + F
Sbjct: 241 FPKKVTDFFRKSVERMKESRLKDKQKHRVDF 271
Score = 26.2 bits (56), Expect(2) = e-100
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +1
Query: 922 KEMEPPKNRSKEKLVAQGIIFIF 990
KEM+ K S +LVAQ I+FIF
Sbjct: 282 KEMDTHKALSDLELVAQSIVFIF 304
>ref|XP_851720.1| PREDICTED: cytochrome P-450 3A12, partial [Canis familiaris].
Length = 358
Score = 213 bits (541), Expect(2) = 1e-56
Identities = 108/176 (61%), Positives = 129/176 (73%)
Frame = +3
Query: 366 KECYSVFTNRRSFGPLGAMRNALSLAEDEEWKRIRTLLSPTFTSGKLKEMFPIISHYGDL 545
K ++ FT +RS GP+G M++A+SL+EDEEWKRIRTLLSPTFT+GKLKEMF II YGD+
Sbjct: 6 KFSHTTFTPKRSLGPVGFMKSAISLSEDEEWKRIRTLLSPTFTTGKLKEMFSIIGQYGDV 65
Query: 546 LVSNLRKEAEKGKPVTMKDIFGAYSMDVITSTAFGVNIDSLNNPQDPFVENXXXXXXXXX 725
LV+NLRKEAEKGK + +KD+FGAYSMDVITST+FGVNIDSLN+PQDPFVEN
Sbjct: 66 LVNNLRKEAEKGKAINLKDVFGAYSMDVITSTSFGVNIDSLNHPQDPFVENTKKLLKFDF 125
Query: 726 XXXXXXXXXXXXXXXXXXEVLNITLFPKSSVNFFTKSVKRMKESRLTDQQKGKWTF 893
E+LNI LFPK +FF KSV+RMKESRL D+QK + F
Sbjct: 126 LDPFFFSILLFPFLTPVFEILNIWLFPKKVTDFFRKSVERMKESRLKDKQKHRVDF 181
Score = 26.6 bits (57), Expect(2) = 1e-56
Identities = 14/23 (60%), Positives = 16/23 (69%)
Frame = +1
Query: 922 KEMEPPKNRSKEKLVAQGIIFIF 990
KEM+ K S +LVAQ IIFIF
Sbjct: 192 KEMDTHKALSDLELVAQSIIFIF 214
>ref|XP_539887.2| PREDICTED: similar to Thromboxane-A synthase (TXA synthase) (TXS)
[Canis familiaris].
Length = 533
Score = 115 bits (289), Expect = 5e-26
Identities = 62/181 (34%), Positives = 105/181 (58%), Gaps = 1/181 (0%)
Frame = +3
Query: 159 TYSHGLFKKLGIPGPRPLPYFGNILGYRKGVDHFDKKCFQQYGKMWGVYDGRQPLLAVTD 338
T + +KLGI P+P P+ GN+ + +G + + YG + G Y GR+ + +++
Sbjct: 33 TAAFSRLEKLGIRHPKPSPFIGNLPFFCQGFWESQMELRKLYGPLCGYYLGRRMFIVISE 92
Query: 339 PNMIKSVLVKECYSVFTNRRSFG-PLGAMRNALSLAEDEEWKRIRTLLSPTFTSGKLKEM 515
P+MIK VLV+ ++ FTNR G + +++ D+ W+ +R++L+ F+ KL EM
Sbjct: 93 PDMIKQVLVENFHN-FTNRMVSGLESKPVMDSVLFLRDKRWEEVRSVLTSAFSPEKLNEM 151
Query: 516 FPIISHYGDLLVSNLRKEAEKGKPVTMKDIFGAYSMDVITSTAFGVNIDSLNNPQDPFVE 695
P+IS DLL+++L+ AE G ++ + Y+ DV+ S AFG +DS P DPFV+
Sbjct: 152 TPLISQACDLLLAHLKHYAESGDAFDIQRCYSCYTTDVVASVAFGTQVDSRRAPGDPFVK 211
Query: 696 N 698
+
Sbjct: 212 H 212
>ref|XP_541606.2| PREDICTED: similar to Cytochrome P450 2G1 (CYPIIG1) (P450-OLF1)
(Olfactive) [Canis familiaris].
Length = 494
Score = 52.4 bits (124), Expect = 7e-07
Identities = 43/162 (26%), Positives = 69/162 (42%), Gaps = 6/162 (3%)
Frame = +3
Query: 195 PGPRPLPYFGNILGYRKGVDHFD-KKCFQQYGKMWGVYDGRQPLLAVTDPNMIKSVLVKE 371
PGP P+P+ GN+L R K ++YG ++ VY G +P++ + +K LV
Sbjct: 35 PGPTPIPFLGNVLQVRTDATFQSFMKLREKYGPIFTVYMGPRPVVVLCGHEAVKEALVDR 94
Query: 372 CYSVFTNRRSFGPL--GAMRNALSLAEDEEWKRIRTL---LSPTFTSGKLKEMFPIISHY 536
F+ R + + ++LA E W+ +R + F GK + + I
Sbjct: 95 A-DEFSGRGELASIERNFQGHGVALANGERWRILRRFSLTILRDFGMGK-RSIEERIQEE 152
Query: 537 GDLLVSNLRKEAEKGKPVTMKDIFGAYSMDVITSTAFGVNID 662
L+ LRK KG P+ +VI+S FG D
Sbjct: 153 AGFLLEELRK--TKGSPIEPTFFLSRTVSNVISSVVFGSRFD 192
>ref|XP_855301.1| PREDICTED: similar to cytochrome P450, family 2, subfamily F,
polypeptide 1 [Canis familiaris].
Length = 582
Score = 48.5 bits (114), Expect = 1e-05
Identities = 44/168 (26%), Positives = 74/168 (44%), Gaps = 12/168 (7%)
Frame = +3
Query: 195 PGPRPLPYFGNILGYR-KGVDHFDKKCFQQYGKMWGVYDGRQPLLAVTDPNMIKSVLVKE 371
PGPRPLP+ GN+L R + + K ++YG ++ V+ G + ++ ++ +K LV +
Sbjct: 107 PGPRPLPFLGNLLQLRSQDMLTSLTKLSKEYGSVYTVHLGPRRVVVLSGYQAVKEALVDQ 166
Query: 372 --------CYSVFTNRRSFGPLGAMRNALSLAEDEEWKRIRTL---LSPTFTSGKLKEMF 518
Y VF N N ++ + + WK +R + F GK + +
Sbjct: 167 GEDFSGRGDYPVFFN-------FTKGNGIAFSNGDRWKVLRRFSVQILRNFGMGK-RSIE 218
Query: 519 PIISHYGDLLVSNLRKEAEKGKPVTMKDIFGAYSMDVITSTAFGVNID 662
I G L++ LRK +GKP + ++I S FG D
Sbjct: 219 ERILEEGSFLLAELRK--TEGKPFDPTFVLSRSVSNIICSVIFGSRFD 264
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 39,277,592
Number of extensions: 1033350
Number of successful extensions: 2591
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 2583
Number of HSP's successfully gapped: 13
Length of query: 330
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 227
Effective length of database: 15,440,896
Effective search space: 3505083392
Effective search space used: 3505083392
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002672
(991 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_059488.2| cytochrome P450 3A4 isoform 1 [Homo sapiens]. 350 2e-97
Alignment gi|NP_000768.1| cytochrome P450 3A5 isoform 1 [Homo sapiens]. 351 7e-97
Alignment gi|NP_001189784.1| cytochrome P450 3A4 isoform 2 [Homo sapiens]. 345 4e-96
Alignment gi|NP_000756.2| cytochrome P450 3A7 [Homo sapiens]. 340 1e-93
Alignment gi|NP_073731.1| cytochrome P450 3A43 isoform 1 [Homo sapiens]. 311 4e-85
Alignment gi|NP_476437.1| cytochrome P450 3A43 isoform 3 [Homo sapiens]. 311 4e-85
Alignment gi|NP_476436.1| cytochrome P450 3A43 isoform 2 [Homo sapiens]. 311 4e-85
Alignment gi|NP_001177413.1| cytochrome P450 3A5 isoform 2 [Homo sapiens]. 142 4e-34
Alignment gi|NP_001124438.1| thromboxane-A synthase isoform 1 [Homo sapie... 120 1e-27
Alignment gi|NP_112246.2| thromboxane-A synthase isoform 2 [Homo sapiens]. 120 1e-27
>ref|NP_059488.2| cytochrome P450 3A4 isoform 1 [Homo sapiens].
Length = 503
Score = 350 bits (897), Expect(2) = 2e-97
Identities = 172/271 (63%), Positives = 200/271 (73%)
Frame = +3
Query: 81 MDLIPGFSTETWXXXXXXXXXXXXXGTYSHGLFKKLGIPGPRPLPYFGNILGYRKGVDHF 260
M LIP + ETW GT+SHGLFKKLGIPGP PLP+ GNIL Y KG F
Sbjct: 1 MALIPDLAMETWLLLAVSLVLLYLYGTHSHGLFKKLGIPGPTPLPFLGNILSYHKGFCMF 60
Query: 261 DKKCFQQYGKMWGVYDGRQPLLAVTDPNMIKSVLVKECYSVFTNRRSFGPLGAMRNALSL 440
D +C ++YGK+WG YDG+QP+LA+TDP+MIK+VLVKECYSVFTNRR FGP+G M++A+S+
Sbjct: 61 DMECHKKYGKVWGFYDGQQPVLAITDPDMIKTVLVKECYSVFTNRRPFGPVGFMKSAISI 120
Query: 441 AEDEEWKRIRTLLSPTFTSGKLKEMFPIISHYGDLLVSNLRKEAEKGKPVTMKDIFGAYS 620
AEDEEWKR+R+LLSPTFTSGKLKEM PII+ YGD+LV NLR+EAE GKPVT+KD+FGAYS
Sbjct: 121 AEDEEWKRLRSLLSPTFTSGKLKEMVPIIAQYGDVLVRNLRREAETGKPVTLKDVFGAYS 180
Query: 621 MDVITSTAFGVNIDSLNNPQDPFVENXXXXXXXXXXXXXXXXXXXXXXXXXXXEVLNITL 800
MDVITST+FGVNIDSLNNPQDPFVEN EVLNI +
Sbjct: 181 MDVITSTSFGVNIDSLNNPQDPFVENTKKLLRFDFLDPFFLSITVFPFLIPILEVLNICV 240
Query: 801 FPKSSVNFFTKSVKRMKESRLTDQQKGKWTF 893
FP+ NF KSVKRMKESRL D QK + F
Sbjct: 241 FPREVTNFLRKSVKRMKESRLEDTQKHRVDF 271
Score = 25.4 bits (54), Expect(2) = 2e-97
Identities = 14/23 (60%), Positives = 15/23 (65%)
Frame = +1
Query: 922 KEMEPPKNRSKEKLVAQGIIFIF 990
KE E K S +LVAQ IIFIF
Sbjct: 282 KETESHKALSDLELVAQSIIFIF 304
>ref|NP_000768.1| cytochrome P450 3A5 isoform 1 [Homo sapiens].
Length = 502
Score = 351 bits (900), Expect = 7e-97
Identities = 168/271 (61%), Positives = 205/271 (75%)
Frame = +3
Query: 81 MDLIPGFSTETWXXXXXXXXXXXXXGTYSHGLFKKLGIPGPRPLPYFGNILGYRKGVDHF 260
MDLIP + ETW GT +HGLFK+LGIPGP PLP GN+L YR+G+ F
Sbjct: 1 MDLIPNLAVETWLLLAVSLVLLYLYGTRTHGLFKRLGIPGPTPLPLLGNVLSYRQGLWKF 60
Query: 261 DKKCFQQYGKMWGVYDGRQPLLAVTDPNMIKSVLVKECYSVFTNRRSFGPLGAMRNALSL 440
D +C+++YGKMWG Y+G+ P+LA+TDP++I++VLVKECYSVFTNRRS GP+G M++A+SL
Sbjct: 61 DTECYKKYGKMWGTYEGQLPVLAITDPDVIRTVLVKECYSVFTNRRSLGPVGFMKSAISL 120
Query: 441 AEDEEWKRIRTLLSPTFTSGKLKEMFPIISHYGDLLVSNLRKEAEKGKPVTMKDIFGAYS 620
AEDEEWKRIR+LLSPTFTSGKLKEMFPII+ YGD+LV NLR+EAEKGKPVT+KDIFGAYS
Sbjct: 121 AEDEEWKRIRSLLSPTFTSGKLKEMFPIIAQYGDVLVRNLRREAEKGKPVTLKDIFGAYS 180
Query: 621 MDVITSTAFGVNIDSLNNPQDPFVENXXXXXXXXXXXXXXXXXXXXXXXXXXXEVLNITL 800
MDVIT T+FGVNIDSLNNPQDPFVE+ E LN++L
Sbjct: 181 MDVITGTSFGVNIDSLNNPQDPFVESTKKFLKFGFLDPLFLSIILFPFLTPVFEALNVSL 240
Query: 801 FPKSSVNFFTKSVKRMKESRLTDQQKGKWTF 893
FPK ++NF +KSV RMK+SRL D+QK + F
Sbjct: 241 FPKDTINFLSKSVNRMKKSRLNDKQKHRLDF 271
>ref|NP_001189784.1| cytochrome P450 3A4 isoform 2 [Homo sapiens].
Length = 502
Score = 345 bits (886), Expect(2) = 4e-96
Identities = 172/271 (63%), Positives = 200/271 (73%)
Frame = +3
Query: 81 MDLIPGFSTETWXXXXXXXXXXXXXGTYSHGLFKKLGIPGPRPLPYFGNILGYRKGVDHF 260
M LIP + ETW GT+SHGLFKKLGIPGP PLP+ GNIL Y KG F
Sbjct: 1 MALIPDLAMETWLLLAVSLVLLYLYGTHSHGLFKKLGIPGPTPLPFLGNILSYHKGFCMF 60
Query: 261 DKKCFQQYGKMWGVYDGRQPLLAVTDPNMIKSVLVKECYSVFTNRRSFGPLGAMRNALSL 440
D +C ++YGK+WG YDG+QP+LA+TDP+MIK+VLVKECYSVFTNRR FGP+G M++A+S+
Sbjct: 61 DMECHKKYGKVWGFYDGQQPVLAITDPDMIKTVLVKECYSVFTNRRPFGPVGFMKSAISI 120
Query: 441 AEDEEWKRIRTLLSPTFTSGKLKEMFPIISHYGDLLVSNLRKEAEKGKPVTMKDIFGAYS 620
AEDEEWKR+R+LLSPTFTSGKLKEM PII+ YGD+LV NLR+EAE GKPVT+KD+FGAYS
Sbjct: 121 AEDEEWKRLRSLLSPTFTSGKLKEMVPIIAQYGDVLVRNLRREAETGKPVTLKDVFGAYS 180
Query: 621 MDVITSTAFGVNIDSLNNPQDPFVENXXXXXXXXXXXXXXXXXXXXXXXXXXXEVLNITL 800
MDVITST+FGVNIDSLNNPQDPFVEN EVLNI +
Sbjct: 181 MDVITSTSFGVNIDSLNNPQDPFVEN-TKKLLRFDFLDPFFLSIIFPFLIPILEVLNICV 239
Query: 801 FPKSSVNFFTKSVKRMKESRLTDQQKGKWTF 893
FP+ NF KSVKRMKESRL D QK + F
Sbjct: 240 FPREVTNFLRKSVKRMKESRLEDTQKHRVDF 270
Score = 25.4 bits (54), Expect(2) = 4e-96
Identities = 14/23 (60%), Positives = 15/23 (65%)
Frame = +1
Query: 922 KEMEPPKNRSKEKLVAQGIIFIF 990
KE E K S +LVAQ IIFIF
Sbjct: 281 KETESHKALSDLELVAQSIIFIF 303
>ref|NP_000756.2| cytochrome P450 3A7 [Homo sapiens].
Length = 503
Score = 340 bits (872), Expect = 1e-93
Identities = 165/271 (60%), Positives = 200/271 (73%)
Frame = +3
Query: 81 MDLIPGFSTETWXXXXXXXXXXXXXGTYSHGLFKKLGIPGPRPLPYFGNILGYRKGVDHF 260
MDLIP + ETW GT +HGLFKKLGIPGP PLP+ GN L +RKG F
Sbjct: 1 MDLIPNLAVETWLLLAVSLILLYLYGTRTHGLFKKLGIPGPTPLPFLGNALSFRKGYWTF 60
Query: 261 DKKCFQQYGKMWGVYDGRQPLLAVTDPNMIKSVLVKECYSVFTNRRSFGPLGAMRNALSL 440
D +C+++Y K+WG+YD +QP+LA+TDP+MIK+VLVKECYSVFTNRR FGP+G M+NA+S+
Sbjct: 61 DMECYKKYRKVWGIYDCQQPMLAITDPDMIKTVLVKECYSVFTNRRPFGPVGFMKNAISI 120
Query: 441 AEDEEWKRIRTLLSPTFTSGKLKEMFPIISHYGDLLVSNLRKEAEKGKPVTMKDIFGAYS 620
AEDEEWKRIR+LLSPTFTSGKLKEM PII+ YGD+LV NLR+EAE GKPVT+K +FGAYS
Sbjct: 121 AEDEEWKRIRSLLSPTFTSGKLKEMVPIIAQYGDVLVRNLRREAETGKPVTLKHVFGAYS 180
Query: 621 MDVITSTAFGVNIDSLNNPQDPFVENXXXXXXXXXXXXXXXXXXXXXXXXXXXEVLNITL 800
MDVITST+FGV+IDSLNNPQDPFVEN E LNIT+
Sbjct: 181 MDVITSTSFGVSIDSLNNPQDPFVENTKKLLRFNPLDPFVLSIKVFPFLTPILEALNITV 240
Query: 801 FPKSSVNFFTKSVKRMKESRLTDQQKGKWTF 893
FP+ ++F TKSVK++KE RL + QK + F
Sbjct: 241 FPRKVISFLTKSVKQIKEGRLKETQKHRVDF 271
>ref|NP_073731.1| cytochrome P450 3A43 isoform 1 [Homo sapiens].
Length = 504
Score = 311 bits (798), Expect = 4e-85
Identities = 152/272 (55%), Positives = 189/272 (69%)
Frame = +3
Query: 81 MDLIPGFSTETWXXXXXXXXXXXXXGTYSHGLFKKLGIPGPRPLPYFGNILGYRKGVDHF 260
MDLIP F+ ETW GT+SH LFKKLGIPGP PLP+ G IL Y +G+ +F
Sbjct: 1 MDLIPNFAMETWVLVATSLVLLYIYGTHSHKLFKKLGIPGPTPLPFLGTILFYLRGLWNF 60
Query: 261 DKKCFQQYGKMWGVYDGRQPLLAVTDPNMIKSVLVKECYSVFTNRRSFGPLGAMRNALSL 440
D++C ++YG+MWG+Y+G+QP+L + DP+MIK+VLVKECYSVFTN+ GP+G +++ALS
Sbjct: 61 DRECNEKYGEMWGLYEGQQPMLVIMDPDMIKTVLVKECYSVFTNQMPLGPMGFLKSALSF 120
Query: 441 AEDEEWKRIRTLLSPTFTSGKLKEMFPIISHYGDLLVSNLRKEAEKGKPVTMKDIFGAYS 620
AEDEEWKRIRTLLSP FTS K KEM PIIS GD+LV +LR+EAE K + +KD FGAY+
Sbjct: 121 AEDEEWKRIRTLLSPAFTSVKFKEMVPIISQCGDMLVRSLRQEAENSKSINLKDFFGAYT 180
Query: 621 MDVITSTAFGVNIDSLNNPQDPFVENXXXXXXXXXXXXXXXXXXXXXXXXXXXEVLNITL 800
MDVIT T FGVN+DSLNNPQDPF++N E LNI L
Sbjct: 181 MDVITGTLFGVNLDSLNNPQDPFLKNMKKLLKLDFLDPFLLLISLFPFLTPVFEALNIGL 240
Query: 801 FPKSSVNFFTKSVKRMKESRLTDQQKGKWTFF 896
FPK +F S++RMKESRL D+QK + FF
Sbjct: 241 FPKDVTHFLKNSIERMKESRLKDKQKHRVDFF 272
>ref|NP_476437.1| cytochrome P450 3A43 isoform 3 [Homo sapiens].
Length = 420
Score = 311 bits (798), Expect = 4e-85
Identities = 152/272 (55%), Positives = 189/272 (69%)
Frame = +3
Query: 81 MDLIPGFSTETWXXXXXXXXXXXXXGTYSHGLFKKLGIPGPRPLPYFGNILGYRKGVDHF 260
MDLIP F+ ETW GT+SH LFKKLGIPGP PLP+ G IL Y +G+ +F
Sbjct: 1 MDLIPNFAMETWVLVATSLVLLYIYGTHSHKLFKKLGIPGPTPLPFLGTILFYLRGLWNF 60
Query: 261 DKKCFQQYGKMWGVYDGRQPLLAVTDPNMIKSVLVKECYSVFTNRRSFGPLGAMRNALSL 440
D++C ++YG+MWG+Y+G+QP+L + DP+MIK+VLVKECYSVFTN+ GP+G +++ALS
Sbjct: 61 DRECNEKYGEMWGLYEGQQPMLVIMDPDMIKTVLVKECYSVFTNQMPLGPMGFLKSALSF 120
Query: 441 AEDEEWKRIRTLLSPTFTSGKLKEMFPIISHYGDLLVSNLRKEAEKGKPVTMKDIFGAYS 620
AEDEEWKRIRTLLSP FTS K KEM PIIS GD+LV +LR+EAE K + +KD FGAY+
Sbjct: 121 AEDEEWKRIRTLLSPAFTSVKFKEMVPIISQCGDMLVRSLRQEAENSKSINLKDFFGAYT 180
Query: 621 MDVITSTAFGVNIDSLNNPQDPFVENXXXXXXXXXXXXXXXXXXXXXXXXXXXEVLNITL 800
MDVIT T FGVN+DSLNNPQDPF++N E LNI L
Sbjct: 181 MDVITGTLFGVNLDSLNNPQDPFLKNMKKLLKLDFLDPFLLLISLFPFLTPVFEALNIGL 240
Query: 801 FPKSSVNFFTKSVKRMKESRLTDQQKGKWTFF 896
FPK +F S++RMKESRL D+QK + FF
Sbjct: 241 FPKDVTHFLKNSIERMKESRLKDKQKHRVDFF 272
>ref|NP_476436.1| cytochrome P450 3A43 isoform 2 [Homo sapiens].
Length = 503
Score = 311 bits (798), Expect = 4e-85
Identities = 152/272 (55%), Positives = 189/272 (69%)
Frame = +3
Query: 81 MDLIPGFSTETWXXXXXXXXXXXXXGTYSHGLFKKLGIPGPRPLPYFGNILGYRKGVDHF 260
MDLIP F+ ETW GT+SH LFKKLGIPGP PLP+ G IL Y +G+ +F
Sbjct: 1 MDLIPNFAMETWVLVATSLVLLYIYGTHSHKLFKKLGIPGPTPLPFLGTILFYLRGLWNF 60
Query: 261 DKKCFQQYGKMWGVYDGRQPLLAVTDPNMIKSVLVKECYSVFTNRRSFGPLGAMRNALSL 440
D++C ++YG+MWG+Y+G+QP+L + DP+MIK+VLVKECYSVFTN+ GP+G +++ALS
Sbjct: 61 DRECNEKYGEMWGLYEGQQPMLVIMDPDMIKTVLVKECYSVFTNQMPLGPMGFLKSALSF 120
Query: 441 AEDEEWKRIRTLLSPTFTSGKLKEMFPIISHYGDLLVSNLRKEAEKGKPVTMKDIFGAYS 620
AEDEEWKRIRTLLSP FTS K KEM PIIS GD+LV +LR+EAE K + +KD FGAY+
Sbjct: 121 AEDEEWKRIRTLLSPAFTSVKFKEMVPIISQCGDMLVRSLRQEAENSKSINLKDFFGAYT 180
Query: 621 MDVITSTAFGVNIDSLNNPQDPFVENXXXXXXXXXXXXXXXXXXXXXXXXXXXEVLNITL 800
MDVIT T FGVN+DSLNNPQDPF++N E LNI L
Sbjct: 181 MDVITGTLFGVNLDSLNNPQDPFLKNMKKLLKLDFLDPFLLLISLFPFLTPVFEALNIGL 240
Query: 801 FPKSSVNFFTKSVKRMKESRLTDQQKGKWTFF 896
FPK +F S++RMKESRL D+QK + FF
Sbjct: 241 FPKDVTHFLKNSIERMKESRLKDKQKHRVDFF 272
>ref|NP_001177413.1| cytochrome P450 3A5 isoform 2 [Homo sapiens].
Length = 140
Score = 142 bits (359), Expect = 4e-34
Identities = 62/106 (58%), Positives = 80/106 (75%)
Frame = +3
Query: 81 MDLIPGFSTETWXXXXXXXXXXXXXGTYSHGLFKKLGIPGPRPLPYFGNILGYRKGVDHF 260
MDLIP + ETW GT +HGLFK+LGIPGP PLP GN+L YR+G+ F
Sbjct: 1 MDLIPNLAVETWLLLAVSLVLLYLYGTRTHGLFKRLGIPGPTPLPLLGNVLSYRQGLWKF 60
Query: 261 DKKCFQQYGKMWGVYDGRQPLLAVTDPNMIKSVLVKECYSVFTNRR 398
D +C+++YGKMWG Y+G+ P+LA+TDP++I++VLVKECYSVFTNRR
Sbjct: 61 DTECYKKYGKMWGTYEGQLPVLAITDPDVIRTVLVKECYSVFTNRR 106
>ref|NP_001124438.1| thromboxane-A synthase isoform 1 [Homo sapiens].
Length = 534
Score = 120 bits (302), Expect = 1e-27
Identities = 64/181 (35%), Positives = 107/181 (59%), Gaps = 1/181 (0%)
Frame = +3
Query: 159 TYSHGLFKKLGIPGPRPLPYFGNILGYRKGVDHFDKKCFQQYGKMWGVYDGRQPLLAVTD 338
T + +KLG+ P+P P+ GN+ +R+G + + YG + G Y GR+ + +++
Sbjct: 34 TSAFSRLEKLGLRHPKPSPFIGNLTFFRQGFWESQMELRKLYGPLCGYYLGRRMFIVISE 93
Query: 339 PNMIKSVLVKECYSVFTNRRSFG-PLGAMRNALSLAEDEEWKRIRTLLSPTFTSGKLKEM 515
P+MIK VLV E +S FTNR + G ++ +++ D+ W+ +R L F+ KL EM
Sbjct: 94 PDMIKQVLV-ENFSNFTNRMASGLEFKSVADSVLFLRDKRWEEVRGALMSAFSPEKLNEM 152
Query: 516 FPIISHYGDLLVSNLRKEAEKGKPVTMKDIFGAYSMDVITSTAFGVNIDSLNNPQDPFVE 695
P+IS DLL+++L++ AE G ++ + Y+ DV+ S AFG +DS P+DPFV+
Sbjct: 153 VPLISQACDLLLAHLKRYAESGDAFDIQRCYCNYTTDVVASVAFGTPVDSWQAPEDPFVK 212
Query: 696 N 698
+
Sbjct: 213 H 213
>ref|NP_112246.2| thromboxane-A synthase isoform 2 [Homo sapiens].
Length = 460
Score = 120 bits (302), Expect = 1e-27
Identities = 64/181 (35%), Positives = 107/181 (59%), Gaps = 1/181 (0%)
Frame = +3
Query: 159 TYSHGLFKKLGIPGPRPLPYFGNILGYRKGVDHFDKKCFQQYGKMWGVYDGRQPLLAVTD 338
T + +KLG+ P+P P+ GN+ +R+G + + YG + G Y GR+ + +++
Sbjct: 34 TSAFSRLEKLGLRHPKPSPFIGNLTFFRQGFWESQMELRKLYGPLCGYYLGRRMFIVISE 93
Query: 339 PNMIKSVLVKECYSVFTNRRSFG-PLGAMRNALSLAEDEEWKRIRTLLSPTFTSGKLKEM 515
P+MIK VLV E +S FTNR + G ++ +++ D+ W+ +R L F+ KL EM
Sbjct: 94 PDMIKQVLV-ENFSNFTNRMASGLEFKSVADSVLFLRDKRWEEVRGALMSAFSPEKLNEM 152
Query: 516 FPIISHYGDLLVSNLRKEAEKGKPVTMKDIFGAYSMDVITSTAFGVNIDSLNNPQDPFVE 695
P+IS DLL+++L++ AE G ++ + Y+ DV+ S AFG +DS P+DPFV+
Sbjct: 153 VPLISQACDLLLAHLKRYAESGDAFDIQRCYCNYTTDVVASVAFGTPVDSWQAPEDPFVK 212
Query: 696 N 698
+
Sbjct: 213 H 213
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 38,553,963
Number of extensions: 1014857
Number of successful extensions: 2608
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 2600
Number of HSP's successfully gapped: 16
Length of query: 330
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 227
Effective length of database: 14,901,872
Effective search space: 3382724944
Effective search space used: 3382724944
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002672
(991 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_062766.2| cytochrome P450 3A25 [Mus musculus]. 332 3e-91
Alignment gi|NP_031845.1| cytochrome P450 3A13 [Mus musculus]. 328 2e-90
Alignment gi|NP_001098630.1| cytochrome P450, subfamily 3A, polypeptide 5... 323 1e-88
Alignment gi|NP_001093650.1| cytochrome P450, family 3, subfamily a, poly... 323 1e-88
Alignment gi|NP_031844.1| cytochrome P450 3A11 [Mus musculus]. 321 6e-88
Alignment gi|NP_059092.2| cytochrome P450 3A41 [Mus musculus]. 320 8e-88
Alignment gi|NP_001098629.1| cytochrome P450 3A41 [Mus musculus]. 320 8e-88
Alignment gi|NP_796354.1| cytochrome P450, family 3, subfamily a, polypep... 304 6e-83
Alignment gi|NP_031846.2| cytochrome P450 3A16 [Mus musculus]. 302 2e-82
Alignment gi|NP_035669.3| thromboxane-A synthase [Mus musculus]. 120 2e-27
>ref|NP_062766.2| cytochrome P450 3A25 [Mus musculus].
Length = 503
Score = 332 bits (851), Expect = 3e-91
Identities = 158/271 (58%), Positives = 193/271 (71%)
Frame = +3
Query: 81 MDLIPGFSTETWXXXXXXXXXXXXXGTYSHGLFKKLGIPGPRPLPYFGNILGYRKGVDHF 260
M+LIP S ETW GTYSHGLFKKLGIPGP+PLP G I Y G+ F
Sbjct: 1 MELIPNLSIETWVLLVTSLVLFYIYGTYSHGLFKKLGIPGPKPLPLLGTIFNYYDGMWKF 60
Query: 261 DKKCFQQYGKMWGVYDGRQPLLAVTDPNMIKSVLVKECYSVFTNRRSFGPLGAMRNALSL 440
D+ C+++YGK+WG Y+G QP+LA+ DP +IK VLVKECYSVFTNRR FGP+G M+ A+++
Sbjct: 61 DEDCYKKYGKIWGFYEGPQPILAIMDPEIIKIVLVKECYSVFTNRRFFGPVGFMKKAITI 120
Query: 441 AEDEEWKRIRTLLSPTFTSGKLKEMFPIISHYGDLLVSNLRKEAEKGKPVTMKDIFGAYS 620
+EDEEWKR+RTLLSPTFTSGKLKEMFPI+ YGD+LV NLR+E EKG+P++MKDIFGAYS
Sbjct: 121 SEDEEWKRLRTLLSPTFTSGKLKEMFPIMRQYGDILVRNLRREEEKGEPISMKDIFGAYS 180
Query: 621 MDVITSTAFGVNIDSLNNPQDPFVENXXXXXXXXXXXXXXXXXXXXXXXXXXXEVLNITL 800
MDVIT T+FGVN+DSLNNPQDPFV+ E+LN ++
Sbjct: 181 MDVITGTSFGVNVDSLNNPQDPFVQKAKKILKFKIFDPFLLSIILFPFLTPIYEMLNFSI 240
Query: 801 FPKSSVNFFTKSVKRMKESRLTDQQKGKWTF 893
FP+ S+NFF K VKRMK+ RL QK + F
Sbjct: 241 FPRDSMNFFKKFVKRMKKERLASNQKNRVDF 271
>ref|NP_031845.1| cytochrome P450 3A13 [Mus musculus].
Length = 503
Score = 328 bits (840), Expect(2) = 2e-90
Identities = 155/271 (57%), Positives = 199/271 (73%)
Frame = +3
Query: 81 MDLIPGFSTETWXXXXXXXXXXXXXGTYSHGLFKKLGIPGPRPLPYFGNILGYRKGVDHF 260
MDLIP FS ETW GT+SHG+FKKLGIPGP+PLP+ G IL Y+KG
Sbjct: 1 MDLIPNFSMETWMLLATSLVLLYLYGTHSHGIFKKLGIPGPKPLPFLGTILAYQKGFWEC 60
Query: 261 DKKCFQQYGKMWGVYDGRQPLLAVTDPNMIKSVLVKECYSVFTNRRSFGPLGAMRNALSL 440
D +C ++YGKMWG+YDGRQP+LA+TDP++IK+VLVKECYS FTNRR FGP+G ++ A+S+
Sbjct: 61 DIQCHKKYGKMWGLYDGRQPVLAITDPDIIKTVLVKECYSTFTNRRRFGPVGILKKAISI 120
Query: 441 AEDEEWKRIRTLLSPTFTSGKLKEMFPIISHYGDLLVSNLRKEAEKGKPVTMKDIFGAYS 620
+E+EEWKRIR LLSPTFTSG+LKEMFPII+ + D+LV N+R+ +GKP +MKDIFGAYS
Sbjct: 121 SENEEWKRIRALLSPTFTSGRLKEMFPIINQFTDVLVRNMRQGLGEGKPTSMKDIFGAYS 180
Query: 621 MDVITSTAFGVNIDSLNNPQDPFVENXXXXXXXXXXXXXXXXXXXXXXXXXXXEVLNITL 800
MDVIT+T+FGVNIDSLNNPQDPFVE + LN++L
Sbjct: 181 MDVITATSFGVNIDSLNNPQDPFVEKIKKLLKFDIFDPLFLSVTLFPFLTPVFDALNVSL 240
Query: 801 FPKSSVNFFTKSVKRMKESRLTDQQKGKWTF 893
FP+ ++FFT SV+RMKE+R+ +++K + F
Sbjct: 241 FPRDVISFFTTSVERMKENRMKEKEKQRVDF 271
Score = 23.5 bits (49), Expect(2) = 2e-90
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 919 FKEMEPPKNRSKEKLVAQGIIFIF 990
+K E K S ++VAQ +IFIF
Sbjct: 281 YKTKESHKALSDVEIVAQSVIFIF 304
>ref|NP_001098630.1| cytochrome P450, subfamily 3A, polypeptide 59 [Mus musculus].
Length = 503
Score = 323 bits (829), Expect = 1e-88
Identities = 154/271 (56%), Positives = 193/271 (71%)
Frame = +3
Query: 81 MDLIPGFSTETWXXXXXXXXXXXXXGTYSHGLFKKLGIPGPRPLPYFGNILGYRKGVDHF 260
M+LIP S ETW GTYSHGLFKKLGIPGP+PLP FG I Y G+ F
Sbjct: 1 MELIPNLSIETWVLLVTSLVFFYIYGTYSHGLFKKLGIPGPKPLPLFGTIFNYFDGMWKF 60
Query: 261 DKKCFQQYGKMWGVYDGRQPLLAVTDPNMIKSVLVKECYSVFTNRRSFGPLGAMRNALSL 440
D+ C+++YGK+WG Y G +P+LA+ DP +IK VLVKECYSVFTNR + GP+G ++ ++++
Sbjct: 61 DEDCYKKYGKIWGFYVGPKPILAIMDPEIIKIVLVKECYSVFTNRPTLGPVGFLKKSITI 120
Query: 441 AEDEEWKRIRTLLSPTFTSGKLKEMFPIISHYGDLLVSNLRKEAEKGKPVTMKDIFGAYS 620
+EDEEWKR+RTLLSPTFTSGKLKEMFPI+ YGD+LV NLR+E EKG+P+ MKDIFGAYS
Sbjct: 121 SEDEEWKRLRTLLSPTFTSGKLKEMFPIMRQYGDILVRNLRREEEKGEPINMKDIFGAYS 180
Query: 621 MDVITSTAFGVNIDSLNNPQDPFVENXXXXXXXXXXXXXXXXXXXXXXXXXXXEVLNITL 800
MDVIT T+FGVNIDSLNNPQ+PFV+ E+LN+++
Sbjct: 181 MDVITGTSFGVNIDSLNNPQNPFVQKTKKILKFKIFDPFLLSTILFPFLTPIYEMLNLSI 240
Query: 801 FPKSSVNFFTKSVKRMKESRLTDQQKGKWTF 893
FP+ S+NFF K VKRMK+ RL +QK + F
Sbjct: 241 FPRDSMNFFKKFVKRMKKERLASKQKNRVDF 271
>ref|NP_001093650.1| cytochrome P450, family 3, subfamily a, polypeptide 57 [Mus
musculus].
Length = 503
Score = 323 bits (828), Expect = 1e-88
Identities = 154/271 (56%), Positives = 192/271 (70%)
Frame = +3
Query: 81 MDLIPGFSTETWXXXXXXXXXXXXXGTYSHGLFKKLGIPGPRPLPYFGNILGYRKGVDHF 260
M+LIP S +TW GTYSHGLFKKLGIPGP+PLP FGNI+ Y G+ F
Sbjct: 1 MELIPNLSIQTWVLLVTSLVFFYIYGTYSHGLFKKLGIPGPKPLPLFGNIINYLDGMWKF 60
Query: 261 DKKCFQQYGKMWGVYDGRQPLLAVTDPNMIKSVLVKECYSVFTNRRSFGPLGAMRNALSL 440
D C+++YGK+WG Y+G QP+LA+ DP +IK VLVKECYSVFTNRR FGP+G ++ ++++
Sbjct: 61 DDDCYKKYGKIWGFYEGPQPILAIMDPEIIKIVLVKECYSVFTNRRPFGPVGFLKKSITI 120
Query: 441 AEDEEWKRIRTLLSPTFTSGKLKEMFPIISHYGDLLVSNLRKEAEKGKPVTMKDIFGAYS 620
+EDEEWKR+RTLLSPTFTS KLKEMFPI+ YGD+LV NLR+E EK +P+ MKDIFGAYS
Sbjct: 121 SEDEEWKRLRTLLSPTFTSSKLKEMFPIMRQYGDILVRNLRREEEKEEPINMKDIFGAYS 180
Query: 621 MDVITSTAFGVNIDSLNNPQDPFVENXXXXXXXXXXXXXXXXXXXXXXXXXXXEVLNITL 800
MDVIT T+ GVNIDSLNNPQDPFV+ E+LN+++
Sbjct: 181 MDVITGTSCGVNIDSLNNPQDPFVQKIKKILKFKFFDPFLLSVVLFPFLTPIYEMLNLSI 240
Query: 801 FPKSSVNFFTKSVKRMKESRLTDQQKGKWTF 893
FP+ S+NFF K VK+MK+ RL QK + F
Sbjct: 241 FPRQSMNFFKKFVKKMKKDRLDYNQKNRVDF 271
>ref|NP_031844.1| cytochrome P450 3A11 [Mus musculus].
Length = 504
Score = 321 bits (822), Expect = 6e-88
Identities = 155/271 (57%), Positives = 189/271 (69%)
Frame = +3
Query: 81 MDLIPGFSTETWXXXXXXXXXXXXXGTYSHGLFKKLGIPGPRPLPYFGNILGYRKGVDHF 260
MDL+ S ETW GT H LFKK GIPGP+PLP+ G +L Y KG+ F
Sbjct: 1 MDLVSALSLETWVLLAISLVLLYRYGTRKHELFKKQGIPGPKPLPFLGTVLNYYKGLWKF 60
Query: 261 DKKCFQQYGKMWGVYDGRQPLLAVTDPNMIKSVLVKECYSVFTNRRSFGPLGAMRNALSL 440
D +C+++YGK WG++DG+ PLLAVTDP IK+VLVKEC+SVFTNRR FGP+G M A+S+
Sbjct: 61 DMECYKKYGKTWGLFDGQTPLLAVTDPETIKNVLVKECFSVFTNRRDFGPVGIMSKAISI 120
Query: 441 AEDEEWKRIRTLLSPTFTSGKLKEMFPIISHYGDLLVSNLRKEAEKGKPVTMKDIFGAYS 620
++D+EWKR R LLSPTFTSGKLKEMFP+I YGD+LV LR++A+KGKPVTMKD+ GAYS
Sbjct: 121 SKDDEWKRYRALLSPTFTSGKLKEMFPVIEQYGDILVKYLRQKAKKGKPVTMKDVLGAYS 180
Query: 621 MDVITSTAFGVNIDSLNNPQDPFVENXXXXXXXXXXXXXXXXXXXXXXXXXXXEVLNITL 800
MDVITST+FGVN+DSLNNP+DPFVE E+LNI +
Sbjct: 181 MDVITSTSFGVNVDSLNNPEDPFVEKAKKLLRFDFFDPLLFSVVLFPFLTPVYEMLNICM 240
Query: 801 FPKSSVNFFTKSVKRMKESRLTDQQKGKWTF 893
FPK S+ FF K V RMKESRL +QK + F
Sbjct: 241 FPKDSIEFFKKFVDRMKESRLDSKQKHRVDF 271
>ref|NP_059092.2| cytochrome P450 3A41 [Mus musculus].
Length = 504
Score = 320 bits (821), Expect = 8e-88
Identities = 153/271 (56%), Positives = 188/271 (69%)
Frame = +3
Query: 81 MDLIPGFSTETWXXXXXXXXXXXXXGTYSHGLFKKLGIPGPRPLPYFGNILGYRKGVDHF 260
M+L S +TW GT +HGLFKK GIPGP+PLP+ G +L Y KG+ F
Sbjct: 1 MNLFSALSLDTWVLLAIILVLLYRYGTRTHGLFKKQGIPGPKPLPFLGTVLNYYKGLWKF 60
Query: 261 DKKCFQQYGKMWGVYDGRQPLLAVTDPNMIKSVLVKECYSVFTNRRSFGPLGAMRNALSL 440
D +C+++YGK WG++DG+ PL +TDP MIK+VLVKEC+SVFTNRR FGP+G M A+S+
Sbjct: 61 DMECYEKYGKTWGLFDGQMPLFVITDPEMIKNVLVKECFSVFTNRREFGPVGIMSKAISI 120
Query: 441 AEDEEWKRIRTLLSPTFTSGKLKEMFPIISHYGDLLVSNLRKEAEKGKPVTMKDIFGAYS 620
++DEEWKR R LLSPTFTSGKLKEMFP+I YGD+LV L +EAEKGKPVTMKD+ GAYS
Sbjct: 121 SKDEEWKRYRALLSPTFTSGKLKEMFPVIEQYGDILVKYLMQEAEKGKPVTMKDVLGAYS 180
Query: 621 MDVITSTAFGVNIDSLNNPQDPFVENXXXXXXXXXXXXXXXXXXXXXXXXXXXEVLNITL 800
+DVITST+FGVN+DSLNNP+DPFVE E+LNI +
Sbjct: 181 IDVITSTSFGVNVDSLNNPEDPFVEKAKGILRVDFFDPLVFSVVLFPFLTPVYEMLNICM 240
Query: 801 FPKSSVNFFTKSVKRMKESRLTDQQKGKWTF 893
FPK S+ FF K V RMKESRL +QK + F
Sbjct: 241 FPKDSIEFFKKFVNRMKESRLDSKQKHRVDF 271
>ref|NP_001098629.1| cytochrome P450 3A41 [Mus musculus].
Length = 504
Score = 320 bits (821), Expect = 8e-88
Identities = 153/271 (56%), Positives = 188/271 (69%)
Frame = +3
Query: 81 MDLIPGFSTETWXXXXXXXXXXXXXGTYSHGLFKKLGIPGPRPLPYFGNILGYRKGVDHF 260
M+L S +TW GT +HGLFKK GIPGP+PLP+ G +L Y KG+ F
Sbjct: 1 MNLFSALSLDTWVLLAIILVLLYRYGTRTHGLFKKQGIPGPKPLPFLGTVLNYYKGLWKF 60
Query: 261 DKKCFQQYGKMWGVYDGRQPLLAVTDPNMIKSVLVKECYSVFTNRRSFGPLGAMRNALSL 440
D +C+++YGK WG++DG+ PL +TDP MIK+VLVKEC+SVFTNRR FGP+G M A+S+
Sbjct: 61 DMECYEKYGKTWGLFDGQMPLFVITDPEMIKNVLVKECFSVFTNRREFGPVGIMSKAISI 120
Query: 441 AEDEEWKRIRTLLSPTFTSGKLKEMFPIISHYGDLLVSNLRKEAEKGKPVTMKDIFGAYS 620
++DEEWKR R LLSPTFTSGKLKEMFP+I YGD+LV L +EAEKGKPVTMKD+ GAYS
Sbjct: 121 SKDEEWKRYRALLSPTFTSGKLKEMFPVIEQYGDILVKYLMQEAEKGKPVTMKDVLGAYS 180
Query: 621 MDVITSTAFGVNIDSLNNPQDPFVENXXXXXXXXXXXXXXXXXXXXXXXXXXXEVLNITL 800
+DVITST+FGVN+DSLNNP+DPFVE E+LNI +
Sbjct: 181 IDVITSTSFGVNVDSLNNPEDPFVEKAKGILRVDFFDPLVFSVVLFPFLTPVYEMLNICM 240
Query: 801 FPKSSVNFFTKSVKRMKESRLTDQQKGKWTF 893
FPK S+ FF K V RMKESRL +QK + F
Sbjct: 241 FPKDSIEFFKKFVNRMKESRLDSKQKHRVDF 271
>ref|NP_796354.1| cytochrome P450, family 3, subfamily a, polypeptide 44 [Mus
musculus].
Length = 504
Score = 304 bits (779), Expect = 6e-83
Identities = 147/271 (54%), Positives = 182/271 (67%)
Frame = +3
Query: 81 MDLIPGFSTETWXXXXXXXXXXXXXGTYSHGLFKKLGIPGPRPLPYFGNILGYRKGVDHF 260
M+L S +T GT +HGLFKK GIPGP+PLP+ G +L Y G+ F
Sbjct: 1 MNLFSALSLDTLVLLAIILVLLYRYGTRTHGLFKKQGIPGPKPLPFLGTVLNYYTGIWKF 60
Query: 261 DKKCFQQYGKMWGVYDGRQPLLAVTDPNMIKSVLVKECYSVFTNRRSFGPLGAMRNALSL 440
D +C+++YGK WG++DG+ PLL +TDP IK+VLVK+C SVFTNRR FGP+G M A+S+
Sbjct: 61 DMECYEKYGKTWGLFDGQTPLLVITDPETIKNVLVKDCLSVFTNRREFGPVGIMSKAISI 120
Query: 441 AEDEEWKRIRTLLSPTFTSGKLKEMFPIISHYGDLLVSNLRKEAEKGKPVTMKDIFGAYS 620
++DEEWKR R LLSPTFTSG+LKEMFP+I YGD+LV LR+EAEKG PV MKD+ GAYS
Sbjct: 121 SKDEEWKRYRALLSPTFTSGRLKEMFPVIEQYGDILVKYLRQEAEKGMPVAMKDVLGAYS 180
Query: 621 MDVITSTAFGVNIDSLNNPQDPFVENXXXXXXXXXXXXXXXXXXXXXXXXXXXEVLNITL 800
MDVITST+FGVN+DSLNNP+DPFVE E+LNI +
Sbjct: 181 MDVITSTSFGVNVDSLNNPEDPFVEEAKKFLRVDFFDPLLFSVVLFPLLTPVYEMLNICM 240
Query: 801 FPKSSVNFFTKSVKRMKESRLTDQQKGKWTF 893
FP S+ FF K V RM+ESRL QK + F
Sbjct: 241 FPNDSIEFFKKFVDRMQESRLDSNQKHRVDF 271
>ref|NP_031846.2| cytochrome P450 3A16 [Mus musculus].
Length = 504
Score = 302 bits (774), Expect = 2e-82
Identities = 148/271 (54%), Positives = 182/271 (67%)
Frame = +3
Query: 81 MDLIPGFSTETWXXXXXXXXXXXXXGTYSHGLFKKLGIPGPRPLPYFGNILGYRKGVDHF 260
M+L S +T GT +HGLFKK GIPGP+PLP+ G +L Y KG+ F
Sbjct: 1 MNLFSALSLDTLVLLAIILVLLYRYGTCTHGLFKKQGIPGPKPLPFLGTVLNYYKGLWKF 60
Query: 261 DKKCFQQYGKMWGVYDGRQPLLAVTDPNMIKSVLVKECYSVFTNRRSFGPLGAMRNALSL 440
D +C+++YGK WG++DG+ PL +TDP IK+VLVKEC+SVFTNR+ F P+G M ++SL
Sbjct: 61 DMECYEKYGKTWGLFDGQIPLFVITDPETIKNVLVKECFSVFTNRQDFFPVGIMSKSISL 120
Query: 441 AEDEEWKRIRTLLSPTFTSGKLKEMFPIISHYGDLLVSNLRKEAEKGKPVTMKDIFGAYS 620
A+DEEWKR R LLSPTFTSG LKEMFP+I YGD+LV LR+EAEKGKPV +KD+ GAYS
Sbjct: 121 AKDEEWKRYRALLSPTFTSGNLKEMFPVIEQYGDILVKYLRQEAEKGKPVAVKDVLGAYS 180
Query: 621 MDVITSTAFGVNIDSLNNPQDPFVENXXXXXXXXXXXXXXXXXXXXXXXXXXXEVLNITL 800
MDVI ST FGVNIDSLNNP+DPFVEN E+LNI +
Sbjct: 181 MDVIISTTFGVNIDSLNNPEDPFVENAKKVLRFDYFDPLSLSVALFPFLTPIYEMLNICM 240
Query: 801 FPKSSVNFFTKSVKRMKESRLTDQQKGKWTF 893
FPK S+ FF K V RM E+RL +QK + F
Sbjct: 241 FPKDSIEFFKKFVDRMTENRLDSKQKHRVDF 271
>ref|NP_035669.3| thromboxane-A synthase [Mus musculus].
Length = 533
Score = 120 bits (301), Expect = 2e-27
Identities = 64/174 (36%), Positives = 108/174 (62%), Gaps = 1/174 (0%)
Frame = +3
Query: 180 KKLGIPGPRPLPYFGNILGYRKGVDHFDKKCFQQYGKMWGVYDGRQPLLAVTDPNMIKSV 359
+KLGI P+P P+ GN++ +R+G + ++YG + G Y GR+ + +++P+MIK V
Sbjct: 40 EKLGIRHPKPSPFVGNLMFFRQGFWESQLELRERYGPLCGYYLGRRMHVVISEPDMIKQV 99
Query: 360 LVKECYSVFTNRRSFGPLGAM-RNALSLAEDEEWKRIRTLLSPTFTSGKLKEMFPIISHY 536
LV E +S F+NR + G M +++ L D W+ +R L +F+ KL EM P+IS
Sbjct: 100 LV-ENFSNFSNRMASGLEPKMVADSVLLLRDRRWEEVRGALMSSFSPEKLDEMTPLISQA 158
Query: 537 GDLLVSNLRKEAEKGKPVTMKDIFGAYSMDVITSTAFGVNIDSLNNPQDPFVEN 698
+LLV++L++ A ++ + Y++DV+ S AFG +DS N+P+DPFV++
Sbjct: 159 CELLVAHLKRYAASRDAFNIQRCYCCYTIDVVASVAFGTQVDSQNSPEDPFVQH 212
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 32,764,569
Number of extensions: 855431
Number of successful extensions: 2339
Number of sequences better than 1.0e-05: 15
Number of HSP's gapped: 2318
Number of HSP's successfully gapped: 16
Length of query: 330
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 228
Effective length of database: 12,553,887
Effective search space: 2862286236
Effective search space used: 2862286236
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002672
(991 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_999588.1| cytochrome P450 3A29 [Sus scrofa]. 449 e-131
Alignment gi|NP_001128296.1| cytochrome P450 3A46 [Sus scrofa]. 427 e-123
Alignment gi|NP_999587.1| cytochrome P450 3A39 [Sus scrofa]. 420 e-119
Alignment gi|NP_001182438.1| cytochrome P450, subfamily IIIA, polypeptide... 366 e-102
Alignment gi|NP_999211.1| thromboxane-A synthase [Sus scrofa]. 119 3e-27
Alignment gi|XP_003128765.2| PREDICTED: cholesterol 24-hydroxylase-like [... 51 1e-06
Alignment gi|NP_999578.1| cytochrome P450 2B22 [Sus scrofa]. 50 3e-06
Alignment gi|XP_003127188.2| PREDICTED: cytochrome P450 2G1-like isoform ... 50 3e-06
>ref|NP_999588.1| cytochrome P450 3A29 [Sus scrofa].
Length = 503
Score = 449 bits (1155), Expect(2) = e-131
Identities = 226/266 (84%), Positives = 226/266 (84%)
Frame = +3
Query: 81 MDLIPGFSTETWXXXXXXXXXXXXXGTYSHGLFKKLGIPGPRPLPYFGNILGYRKGVDHF 260
MDLIPGFSTETW GTYSHGLFKKLGIPGPRPLPYFGNILGYRKGVDHF
Sbjct: 1 MDLIPGFSTETWVLLATSLVLLYLYGTYSHGLFKKLGIPGPRPLPYFGNILGYRKGVDHF 60
Query: 261 DKKCFQQYGKMWGVYDGRQPLLAVTDPNMIKSVLVKECYSVFTNRRSFGPLGAMRNALSL 440
DKKCFQQYGKMWGVYDGRQPLLAVTDPNMIKSVLVKECYSVFTNRRSFGPLGAMRNALSL
Sbjct: 61 DKKCFQQYGKMWGVYDGRQPLLAVTDPNMIKSVLVKECYSVFTNRRSFGPLGAMRNALSL 120
Query: 441 AEDEEWKRIRTLLSPTFTSGKLKEMFPIISHYGDLLVSNLRKEAEKGKPVTMKDIFGAYS 620
AEDEEWKRIRTLLSPTFTSGKLKEMFPIISHYGDLLVSNLRKEAEKGKPVTMKDIFGAYS
Sbjct: 121 AEDEEWKRIRTLLSPTFTSGKLKEMFPIISHYGDLLVSNLRKEAEKGKPVTMKDIFGAYS 180
Query: 621 MDVITSTAFGVNIDSLNNPQDPFVENXXXXXXXXXXXXXXXXXXXXXXXXXXXEVLNITL 800
MDVITSTAFGVNIDSLNNPQDPFVEN EVLNITL
Sbjct: 181 MDVITSTAFGVNIDSLNNPQDPFVENSKKLLKFSFFDPFLLSLIFFPFLTPIFEVLNITL 240
Query: 801 FPKSSVNFFTKSVKRMKESRLTDQQK 878
FPKSSVNFFTKSVKRMKESRLTDQQK
Sbjct: 241 FPKSSVNFFTKSVKRMKESRLTDQQK 266
Score = 36.6 bits (83), Expect(2) = e-131
Identities = 17/23 (73%), Positives = 20/23 (86%)
Frame = +1
Query: 922 KEMEPPKNRSKEKLVAQGIIFIF 990
KEM+P K+ S E+LVAQGIIFIF
Sbjct: 282 KEMDPHKSLSNEELVAQGIIFIF 304
>ref|NP_001128296.1| cytochrome P450 3A46 [Sus scrofa].
Length = 503
Score = 427 bits (1097), Expect(2) = e-123
Identities = 211/266 (79%), Positives = 221/266 (83%)
Frame = +3
Query: 81 MDLIPGFSTETWXXXXXXXXXXXXXGTYSHGLFKKLGIPGPRPLPYFGNILGYRKGVDHF 260
MDLIPGFSTETW GTYSHGLFKKLGIPGPRPLPYFGNILGYRKGVDHF
Sbjct: 1 MDLIPGFSTETWVLLATSLVLLYLYGTYSHGLFKKLGIPGPRPLPYFGNILGYRKGVDHF 60
Query: 261 DKKCFQQYGKMWGVYDGRQPLLAVTDPNMIKSVLVKECYSVFTNRRSFGPLGAMRNALSL 440
DKKCFQQYGKMWG +DGRQP+LA+TDP+MIK+VLVKECYSVFTNRRSFGP GAMR+A+SL
Sbjct: 61 DKKCFQQYGKMWGFFDGRQPVLAITDPDMIKTVLVKECYSVFTNRRSFGPRGAMRSAVSL 120
Query: 441 AEDEEWKRIRTLLSPTFTSGKLKEMFPIISHYGDLLVSNLRKEAEKGKPVTMKDIFGAYS 620
AEDEEWKRIRTLLSPTFTSGKLKEMFPIISHYGDLLVSNLRKEAEKGKPVTMKDIFGAYS
Sbjct: 121 AEDEEWKRIRTLLSPTFTSGKLKEMFPIISHYGDLLVSNLRKEAEKGKPVTMKDIFGAYS 180
Query: 621 MDVITSTAFGVNIDSLNNPQDPFVENXXXXXXXXXXXXXXXXXXXXXXXXXXXEVLNITL 800
MDVITSTAFGVN+DSLNNPQDPFVEN EVLNITL
Sbjct: 181 MDVITSTAFGVNVDSLNNPQDPFVENSRKLLKFSFFSPFFLSIIFFPFLTPILEVLNITL 240
Query: 801 FPKSSVNFFTKSVKRMKESRLTDQQK 878
FPKS VNFFT+S+KRMKESRL D QK
Sbjct: 241 FPKSVVNFFTRSIKRMKESRLKDTQK 266
Score = 32.7 bits (73), Expect(2) = e-123
Identities = 15/23 (65%), Positives = 18/23 (78%)
Frame = +1
Query: 922 KEMEPPKNRSKEKLVAQGIIFIF 990
KEM+ K S E+LVAQG+IFIF
Sbjct: 282 KEMDAHKGLSNEELVAQGVIFIF 304
>ref|NP_999587.1| cytochrome P450 3A39 [Sus scrofa].
Length = 503
Score = 420 bits (1080), Expect(2) = e-119
Identities = 209/271 (77%), Positives = 219/271 (80%)
Frame = +3
Query: 81 MDLIPGFSTETWXXXXXXXXXXXXXGTYSHGLFKKLGIPGPRPLPYFGNILGYRKGVDHF 260
MDLIPGFSTETW GTYSHGLFKKLGIPGPRPLPYFGNILGYRKGVDHF
Sbjct: 1 MDLIPGFSTETWVLLATSLVLLYLYGTYSHGLFKKLGIPGPRPLPYFGNILGYRKGVDHF 60
Query: 261 DKKCFQQYGKMWGVYDGRQPLLAVTDPNMIKSVLVKECYSVFTNRRSFGPLGAMRNALSL 440
DKKCFQQYGKMWG +DGRQP+LA+TDP+MIK+VLVKECYSVFTNRRSFGP GAMR ALSL
Sbjct: 61 DKKCFQQYGKMWGFFDGRQPVLAITDPDMIKTVLVKECYSVFTNRRSFGPRGAMRTALSL 120
Query: 441 AEDEEWKRIRTLLSPTFTSGKLKEMFPIISHYGDLLVSNLRKEAEKGKPVTMKDIFGAYS 620
AEDEEWKRIRTLLSPTFTSGKLKEMFPIISHYGDLLVSNLRKEAEKGKPVTMKDIFGAYS
Sbjct: 121 AEDEEWKRIRTLLSPTFTSGKLKEMFPIISHYGDLLVSNLRKEAEKGKPVTMKDIFGAYS 180
Query: 621 MDVITSTAFGVNIDSLNNPQDPFVENXXXXXXXXXXXXXXXXXXXXXXXXXXXEVLNITL 800
MDVITSTAFGVN D LNNPQDPFVEN EVLN+TL
Sbjct: 181 MDVITSTAFGVNTDFLNNPQDPFVENSKKLLKFSFFSPLFLSIIFFPFLTPILEVLNVTL 240
Query: 801 FPKSSVNFFTKSVKRMKESRLTDQQKGKWTF 893
FPKS VNFF +S+KRMKESRL D+Q + F
Sbjct: 241 FPKSVVNFFMRSIKRMKESRLKDKQTHRVDF 271
Score = 28.5 bits (62), Expect(2) = e-119
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +1
Query: 922 KEMEPPKNRSKEKLVAQGIIFIF 990
KE + K S E+LVAQG+ FIF
Sbjct: 282 KETDTHKGLSDEELVAQGVFFIF 304
>ref|NP_001182438.1| cytochrome P450, subfamily IIIA, polypeptide 22 [Sus scrofa].
Length = 503
Score = 366 bits (940), Expect(2) = e-102
Identities = 177/265 (66%), Positives = 204/265 (76%)
Frame = +3
Query: 81 MDLIPGFSTETWXXXXXXXXXXXXXGTYSHGLFKKLGIPGPRPLPYFGNILGYRKGVDHF 260
MDLIP FS ETW GTYSHGLFKKLGIPGP+PLPY G++L YRKG+ HF
Sbjct: 1 MDLIPSFSVETWLLLATSLVLLYLYGTYSHGLFKKLGIPGPKPLPYLGSVLEYRKGMWHF 60
Query: 261 DKKCFQQYGKMWGVYDGRQPLLAVTDPNMIKSVLVKECYSVFTNRRSFGPLGAMRNALSL 440
D KCF++YGKMWG YDGRQP+LA+ DP MIK+VLVKECYS FTNRR+FGP G M+NA+S+
Sbjct: 61 DNKCFKKYGKMWGFYDGRQPVLAMRDPEMIKAVLVKECYSAFTNRRNFGPAGVMKNAISV 120
Query: 441 AEDEEWKRIRTLLSPTFTSGKLKEMFPIISHYGDLLVSNLRKEAEKGKPVTMKDIFGAYS 620
A+DE+WKR+RTLLSPTFTSGKLKEMFPII+ YGD+LV NLRKEAEKG + K+IFGAYS
Sbjct: 121 AKDEQWKRVRTLLSPTFTSGKLKEMFPIIAQYGDMLVRNLRKEAEKGNSINTKEIFGAYS 180
Query: 621 MDVITSTAFGVNIDSLNNPQDPFVENXXXXXXXXXXXXXXXXXXXXXXXXXXXEVLNITL 800
MDVITSTAFGV++DSLNNP+DPFV+ EVL+ITL
Sbjct: 181 MDVITSTAFGVDVDSLNNPRDPFVQYARKLLRFDFLDPFILSIILFPFLSPFFEVLDITL 240
Query: 801 FPKSSVNFFTKSVKRMKESRLTDQQ 875
FP+SSV FFT+SVKRMKESRL DQQ
Sbjct: 241 FPRSSVKFFTQSVKRMKESRLKDQQ 265
Score = 23.9 bits (50), Expect(2) = e-102
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +1
Query: 922 KEMEPPKNRSKEKLVAQGIIFI 987
KE + K S ++LVAQ IIFI
Sbjct: 282 KETDAHKALSDQELVAQSIIFI 303
>ref|NP_999211.1| thromboxane-A synthase [Sus scrofa].
Length = 534
Score = 119 bits (298), Expect = 3e-27
Identities = 61/181 (33%), Positives = 109/181 (60%), Gaps = 1/181 (0%)
Frame = +3
Query: 159 TYSHGLFKKLGIPGPRPLPYFGNILGYRKGVDHFDKKCFQQYGKMWGVYDGRQPLLAVTD 338
T + +KLGI P+P P+ GN+ +R+G + +QYG + G Y GR+ ++ ++D
Sbjct: 33 TSAFSRLEKLGIRHPKPSPFIGNLTFFRQGFWESHMELRKQYGPLSGYYLGRRMIVVISD 92
Query: 339 PNMIKSVLVKECYSVFTNRRSFG-PLGAMRNALSLAEDEEWKRIRTLLSPTFTSGKLKEM 515
P+MIK VL ++ +S FTNR + G + +++ D+ W+ +R++L+ F+ KL ++
Sbjct: 93 PDMIKQVLAEK-FSNFTNRMATGLESKPVADSILFLRDKRWEEVRSVLTSAFSPKKLNKL 151
Query: 516 FPIISHYGDLLVSNLRKEAEKGKPVTMKDIFGAYSMDVITSTAFGVNIDSLNNPQDPFVE 695
P+IS DLL+++L + AE G ++ + Y+ DV+ S AFG ++S P+ PFV+
Sbjct: 152 TPLISQACDLLLAHLERYAESGDAFDIQRCYCCYTTDVVASVAFGTQVNSSEEPEHPFVK 211
Query: 696 N 698
+
Sbjct: 212 H 212
>ref|XP_003128765.2| PREDICTED: cholesterol 24-hydroxylase-like [Sus scrofa].
Length = 393
Score = 50.8 bits (120), Expect = 1e-06
Identities = 42/181 (23%), Positives = 75/181 (41%), Gaps = 13/181 (7%)
Frame = +3
Query: 183 KLGIPGPRPLPYFGNILGYRKGVDHFDKKCFQ--------QYGKMWGVYDGRQPLLAVTD 338
++GI P +P+ L Y D + Q +YG + V + + VT
Sbjct: 13 EVGISRPLRVPFLLGHLPYFWKKDEVCGRVLQDVFLDWAKKYGPVVRVNVFHKTSVIVTS 72
Query: 339 PNMIKSVLVKECYSVFTN-----RRSFGPLGAMRNALSLAEDEEWKRIRTLLSPTFTSGK 503
P +K L+ Y+ + + FG + +S + E W + R ++ F+
Sbjct: 73 PESVKRFLMSTKYNKDSKMYHAIQTVFGERLFGQGLVSECDYERWHKQRRVMDLAFSRSS 132
Query: 504 LKEMFPIISHYGDLLVSNLRKEAEKGKPVTMKDIFGAYSMDVITSTAFGVNIDSLNNPQD 683
L + I + + LV L +A+ PV+M+D+ +MD++ AFG+ L Q
Sbjct: 133 LVSLMGIFNEKAEQLVEILEAQADGQTPVSMQDMLTCTTMDILAKAAFGIETSMLLGAQK 192
Query: 684 P 686
P
Sbjct: 193 P 193
>ref|NP_999578.1| cytochrome P450 2B22 [Sus scrofa].
Length = 493
Score = 49.7 bits (117), Expect = 3e-06
Identities = 45/158 (28%), Positives = 70/158 (44%), Gaps = 6/158 (3%)
Frame = +3
Query: 195 PGPRPLPYFGNILGY-RKGVDHFDKKCFQQYGKMWGVYDGRQPLLAVTDPNMIKSVLVKE 371
PGPRPLP+ GNIL RKG + ++YG ++ VY G +P++ + I+ LV +
Sbjct: 31 PGPRPLPFLGNILQMDRKGFLKSFQALRERYGDVFTVYLGPRPVVMICGTEAIREALVDQ 90
Query: 372 CYSVFTNRRSFGPLGAMRNALSL--AEDEEWKRIRTLLSPT---FTSGKLKEMFPIISHY 536
F+ R + + + + E WK +R T F GK + + I
Sbjct: 91 A-EAFSGRGKIAVVEPIFQGYGVIFSNGERWKTLRRFSLATMRDFGLGK-RSVEERIQEE 148
Query: 537 GDLLVSNLRKEAEKGKPVTMKDIFGAYSMDVITSTAFG 650
LV LRK +G F + + ++I S FG
Sbjct: 149 AQCLVEELRK--SQGALQDPTYYFHSSTANIICSIVFG 184
>ref|XP_003127188.2| PREDICTED: cytochrome P450 2G1-like isoform 1 [Sus scrofa].
Length = 549
Score = 49.7 bits (117), Expect = 3e-06
Identities = 41/162 (25%), Positives = 69/162 (42%), Gaps = 6/162 (3%)
Frame = +3
Query: 195 PGPRPLPYFGNILGYRKGVDHFD-KKCFQQYGKMWGVYDGRQPLLAVTDPNMIKSVLVKE 371
PGP P+P+ GN+L R K ++YG ++ VY G +P++ + +K L+
Sbjct: 35 PGPTPIPFLGNLLQVRTDATFQSFMKLREKYGPVFTVYMGPRPVVVLCGHEAVKEALIDR 94
Query: 372 CYSVFTNRRSFGPL--GAMRNALSLAEDEEWKRIRTL---LSPTFTSGKLKEMFPIISHY 536
F+ R + + ++LA + W+ +R + F GK + + I
Sbjct: 95 A-DEFSGRGELASVERNFQGHGVALANGDRWRILRRFSLTILRDFGMGK-RSIEERIQEE 152
Query: 537 GDLLVSNLRKEAEKGKPVTMKDIFGAYSMDVITSTAFGVNID 662
L+ LRK KG P+ +VI+S FG D
Sbjct: 153 AGFLLQELRK--TKGAPIEPTFFLSRTVSNVISSVVFGSRFD 192
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 24,128,697
Number of extensions: 638421
Number of successful extensions: 1699
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 1692
Number of HSP's successfully gapped: 12
Length of query: 330
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 231
Effective length of database: 8,879,129
Effective search space: 2051078799
Effective search space used: 2051078799
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002672
(991 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL896383.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 289 1e-75
gb|GL896175.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 200 1e-48
gb|GL894734.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 188 4e-45
gb|GL896415.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 149 3e-33
gb|GL896535.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 137 1e-29
gb|GL893067.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 137 1e-29
gb|GL896194.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 131 8e-28
gb|GL893235.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 94 2e-16
gb|GL896124.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 68 1e-08
gb|GL896566.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 62 6e-07
>gb|GL896383.1| Sus scrofa unplaced genomic scaffold chrU_scaffold729
Length = 9332
Score = 289 bits (146), Expect = 1e-75
Identities = 146/146 (100%)
Strand = Plus / Minus
Query: 6 gtgaaagcagcaggcaaagcgcagcacaaccagctaaaaggaaaatccgaggagagaatc 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4820 gtgaaagcagcaggcaaagcgcagcacaaccagctaaaaggaaaatccgaggagagaatc 4761
Query: 66 acgaggacagtggccatggacctgatcccaggcttttccacagagacctgggttctcctg 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4760 acgaggacagtggccatggacctgatcccaggcttttccacagagacctgggttctcctg 4701
Query: 126 gctaccagcctggtgctcctctatct 151
||||||||||||||||||||||||||
Sbjct: 4700 gctaccagcctggtgctcctctatct 4675
Score = 71.9 bits (36), Expect = 6e-10
Identities = 36/36 (100%)
Strand = Plus / Minus
Query: 244 agggtgttgaccattttgacaaaaagtgttttcaac 279
||||||||||||||||||||||||||||||||||||
Sbjct: 434 agggtgttgaccattttgacaaaaagtgttttcaac 399
>gb|GL896175.1| Sus scrofa unplaced genomic scaffold chrU_scaffold541
Length = 2699
Score = 200 bits (101), Expect = 1e-48
Identities = 101/101 (100%)
Strand = Plus / Minus
Query: 298 gggtttatgatggtcggcagcctctgctggctgtcacagatccaaacatgatcaaatcag 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1917 gggtttatgatggtcggcagcctctgctggctgtcacagatccaaacatgatcaaatcag 1858
Query: 358 tcctagtgaaggaatgttattctgtcttcacaaaccggagg 398
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 1857 tcctagtgaaggaatgttattctgtcttcacaaaccggagg 1817
>gb|GL894734.1| Sus scrofa unplaced genomic scaffold chrU_scaffold337
Length = 627
Score = 188 bits (95), Expect = 4e-45
Identities = 95/95 (100%)
Strand = Plus / Minus
Query: 152 atatgggacgtattcacatggcctttttaagaagctggggattcctgggccaagacctct 211
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 atatgggacgtattcacatggcctttttaagaagctggggattcctgggccaagacctct 461
Query: 212 gccttattttggaaatatcctgggctaccgtaagg 246
|||||||||||||||||||||||||||||||||||
Sbjct: 460 gccttattttggaaatatcctgggctaccgtaagg 426
>gb|GL896415.1| Sus scrofa unplaced genomic scaffold chrU_scaffold758
Length = 10953
Score = 149 bits (75), Expect = 3e-33
Identities = 108/119 (90%)
Strand = Plus / Plus
Query: 751 tattctttccattcctcaccccgatcttcgaagtattaaacatcactctgtttcccaaaa 810
|||||||||||||| | ||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 10828 tattctttccattcttgaccccgatcttggaagtattaaacatcactctgtttcccaaaa 10887
Query: 811 gttctgtgaattttttcacgaaatctgtgaaaaggatgaaagaaagtcgcctcacagat 869
|| ||||||||||||||||| ||| | ||||||||||| ||||||||||||| ||||
Sbjct: 10888 gtgttgtgaattttttcacgagatccataaaaaggatgaaggaaagtcgcctcaaagat 10946
Score = 137 bits (69), Expect = 1e-29
Identities = 93/101 (92%)
Strand = Plus / Plus
Query: 398 gtcttttggtccattgggcgctatgagaaacgctctctctctggctgaggatgaagagtg 457
||||||||||||| || |||||||||| ||| |||||||||||||||||||||||||
Sbjct: 5041 gtcttttggtccacgtggtgctatgagaagtgctgtctctctggctgaggatgaagagtg 5100
Query: 458 gaaaagaatccgaacattgctgtctccgaccttcaccagtg 498
||||||||||||||| |||||||||||||||||||||||||
Sbjct: 5101 gaaaagaatccgaacgttgctgtctccgaccttcaccagtg 5141
Score = 101 bits (51), Expect = 7e-19
Identities = 81/91 (89%)
Strand = Plus / Plus
Query: 305 tgatggtcggcagcctctgctggctgtcacagatccaaacatgatcaaatcagtcctagt 364
||||||||||||||| || ||||| |||| |||||| ||||||||||| | ||||| ||
Sbjct: 2535 tgatggtcggcagcccgtgttggctatcaccgatccagacatgatcaaaacggtcctcgt 2594
Query: 365 gaaggaatgttattctgtcttcacaaaccgg 395
||| |||||||||||||||||||||||||||
Sbjct: 2595 gaaagaatgttattctgtcttcacaaaccgg 2625
>gb|GL896535.1| Sus scrofa unplaced genomic scaffold chrU_scaffold866
Length = 358
Score = 137 bits (69), Expect = 1e-29
Identities = 72/73 (98%)
Strand = Plus / Minus
Query: 678 caagacccctttgtggaaaacagcaagaagctcttaaaatttagtttctttgatcctttc 737
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 114 caagacccctttgtggaaaacagcaagaagctcttaaaatttagtttctttgatccattc 55
Query: 738 cttctctcattaa 750
|||||||||||||
Sbjct: 54 cttctctcattaa 42
>gb|GL893067.1| Sus scrofa unplaced genomic scaffold chrU_scaffold187
Length = 229
Score = 137 bits (69), Expect = 1e-29
Identities = 69/69 (100%)
Strand = Plus / Plus
Query: 511 agatgttccccatcattagccattatggagacttgttggtgagcaacctgaggaaggaag 570
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 161 agatgttccccatcattagccattatggagacttgttggtgagcaacctgaggaaggaag 220
Query: 571 cagagaaag 579
|||||||||
Sbjct: 221 cagagaaag 229
>gb|GL896194.1| Sus scrofa unplaced genomic scaffold chrU_scaffold559
Length = 36070
Score = 131 bits (66), Expect = 8e-28
Identities = 111/126 (88%)
Strand = Plus / Plus
Query: 751 tattctttccattcctcaccccgatcttcgaagtattaaacatcactctgtttcccaaaa 810
|||| ||||||||||||| ||| |||| ||||||||| |||||||| ||||||| | ||
Sbjct: 28459 tattatttccattcctcagcccattctttgaagtattagacatcactttgtttccaagaa 28518
Query: 811 gttctgtgaattttttcacgaaatctgtgaaaaggatgaaagaaagtcgcctcacagatc 870
|||||||||| |||||||| | ||||| ||||||||||||||||||||||||| |||||
Sbjct: 28519 gttctgtgaaatttttcacacagtctgtaaaaaggatgaaagaaagtcgcctcaaagatc 28578
Query: 871 aacaaa 876
||||||
Sbjct: 28579 aacaaa 28584
Score = 99.6 bits (50), Expect = 3e-18
Identities = 68/74 (91%)
Strand = Plus / Plus
Query: 152 atatgggacgtattcacatggcctttttaagaagctggggattcctgggccaagacctct 211
||||||||| |||||||| || ||||||||||||||||||||||| ||||| | ||||||
Sbjct: 8759 atatgggacctattcacacggactttttaagaagctggggattcccgggccgaaacctct 8818
Query: 212 gccttattttggaa 225
||||||||||||||
Sbjct: 8819 gccttattttggaa 8832
Score = 99.6 bits (50), Expect = 3e-18
Identities = 53/54 (98%)
Strand = Plus / Plus
Query: 603 atctttggggcctacagcatggacgtgatcactagcacagcatttggagtgaac 656
|||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 22834 atctttggggcctacagcatggacgtgatcacaagcacagcatttggagtgaac 22887
Score = 89.7 bits (45), Expect = 3e-15
Identities = 66/73 (90%)
Strand = Plus / Plus
Query: 511 agatgttccccatcattagccattatggagacttgttggtgagcaacctgaggaaggaag 570
||||||||||||||||| ||| |||||||| || ||||||| ||||||||||||||||
Sbjct: 19018 agatgttccccatcattgcccagtatggagatatgctggtgaggaacctgaggaaggaag 19077
Query: 571 cagagaaaggcaa 583
|||||||||||||
Sbjct: 19078 cagagaaaggcaa 19090
Score = 87.7 bits (44), Expect = 1e-14
Identities = 74/84 (88%)
Strand = Plus / Plus
Query: 68 gaggacagtggccatggacctgatcccaggcttttccacagagacctgggttctcctggc 127
|||||| ||||||||||||||||||||| ||||||| || |||||| | || |||||
Sbjct: 5049 gaggacggtggccatggacctgatcccaagcttttctgtggaaacctggctgcttctggc 5108
Query: 128 taccagcctggtgctcctctatct 151
||||||||||||||||||||||||
Sbjct: 5109 taccagcctggtgctcctctatct 5132
Score = 73.8 bits (37), Expect = 2e-10
Identities = 40/41 (97%)
Strand = Plus / Plus
Query: 468 cgaacattgctgtctccgaccttcaccagtggaaagctcaa 508
||||||||||||||||| |||||||||||||||||||||||
Sbjct: 18717 cgaacattgctgtctccaaccttcaccagtggaaagctcaa 18757
Score = 58.0 bits (29), Expect = 1e-05
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 255 cattttgacaaaaagtgttttcaacagtatgggaaaatgtggggg 299
||||||||||| || |||||| || ||||||||||||||||||||
Sbjct: 10885 cattttgacaataaatgttttaaaaagtatgggaaaatgtggggg 10929
>gb|GL893235.1| Sus scrofa unplaced genomic scaffold chrU_scaffold202
Length = 249
Score = 93.7 bits (47), Expect = 2e-16
Identities = 80/91 (87%)
Strand = Plus / Plus
Query: 305 tgatggtcggcagcctctgctggctgtcacagatccaaacatgatcaaatcagtcctagt 364
||||||||||||||| || ||||| |||| |||||| ||||||||||| ||||||| ||
Sbjct: 60 tgatggtcggcagcccgtgttggctatcaccgatccagacatgatcaaaacagtcctggt 119
Query: 365 gaaggaatgttattctgtcttcacaaaccgg 395
||| |||||||| || |||||||||||||||
Sbjct: 120 gaaagaatgttactcggtcttcacaaaccgg 150
>gb|GL896124.1| Sus scrofa unplaced genomic scaffold chrU_scaffold496
Length = 594
Score = 67.9 bits (34), Expect = 1e-08
Identities = 56/62 (90%), Gaps = 1/62 (1%)
Strand = Plus / Minus
Query: 883 agtggaccttcttcacctgatgaataactcccaaaatt-caaagaaatggaaccccctaa 941
||||||||||||||| ||||||| ||||||||| |||| |||||||||||| |||| |||
Sbjct: 114 agtggaccttcttcagctgatgattaactcccagaattccaaagaaatggacccccataa 55
Query: 942 aa 943
||
Sbjct: 54 aa 53
>gb|GL896566.1| Sus scrofa unplaced genomic scaffold chrU_scaffold894
Length = 1664
Score = 61.9 bits (31), Expect = 6e-07
Identities = 47/51 (92%), Gaps = 1/51 (1%)
Strand = Plus / Minus
Query: 883 agtggaccttcttcacctgatgaataactcccaaaatt-caaagaaatgga 932
||||||||||||||| ||||||| ||||||||| |||| ||||||||||||
Sbjct: 638 agtggaccttcttcagctgatgattaactcccagaattccaaagaaatgga 588
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 37,402,033
Number of extensions: 309
Number of successful extensions: 309
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 308
Number of HSP's successfully gapped: 19
Length of query: 991
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 970
Effective length of database: 2,808,413,156
Effective search space: 2724160761320
Effective search space used: 2724160761320
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)