Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002767
(945 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_776964.1| low affinity immunoglobulin gamma Fc region rec... 336 2e-92
Alignment gi|NP_001103276.1| Fc fragment of IgG, low affinity IIc, recept... 311 7e-85
Alignment gi|NP_776963.1| high affinity immunoglobulin gamma Fc receptor ... 175 5e-44
Alignment gi|NP_001070870.1| low affinity immunoglobulin gamma Fc region ... 166 2e-41
Alignment gi|NP_001093780.1| high affinity immunoglobulin epsilon recepto... 155 5e-38
Alignment gi|NP_001179494.1| Fc receptor-like B [Bos taurus]. 117 1e-26
Alignment gi|XP_002685894.1| PREDICTED: Fc receptor-like B-like [Bos taur... 117 1e-26
Alignment gi|XP_002686001.1| PREDICTED: Fc receptor-like 3 [Bos taurus]. 89 4e-18
Alignment gi|XP_593037.5| PREDICTED: Fc receptor-like 3 [Bos taurus]. 89 4e-18
Alignment gi|XP_002686003.1| PREDICTED: Fc receptor-like 4-like [Bos taur... 79 6e-15
>ref|NP_776964.1| low affinity immunoglobulin gamma Fc region receptor II-b precursor
[Bos taurus].
Length = 296
Score = 336 bits (862), Expect = 2e-92
Identities = 176/281 (62%), Positives = 198/281 (70%), Gaps = 1/281 (0%)
Frame = +2
Query: 104 MGIPSFLALPAARSDWADCMPCHPLGHMLLWTALLFLAPVPGTHAVLPKAEVKLQPAWIN 283
MGIPSFLA PAAR + A C P HP GHMLLWTALLFLAPV G LPKA V +QPAWIN
Sbjct: 1 MGIPSFLAFPAARRNRAHCTPWHPWGHMLLWTALLFLAPVSGKPD-LPKAVVTIQPAWIN 59
Query: 284 VLQEDSVTLTCQGDHDPGNTTTQWFHNGNFTWTENQPSFSFKARRASSGYYRCQTAYSSL 463
VL+ED VTLTCQG T WFHNG+ T+ QPS+SF+A SG YRCQ +SL
Sbjct: 60 VLREDHVTLTCQGTSFSAGNLTTWFHNGSSIHTQKQPSYSFRAGSNDSGSYRCQREQTSL 119
Query: 464 SDPVHLDVISDWLLLQTSSLVFQEGEPILLRCHSWRNKPLHKVAFFQNGKSKKFSYVDSN 643
SDPVHLDVISDWLLLQT SLVFQEGEPI+LRCHSWRN+PL+K+ F+Q+ KSK FSY +N
Sbjct: 120 SDPVHLDVISDWLLLQTPSLVFQEGEPIMLRCHSWRNQPLNKITFYQDRKSKIFSYQRTN 179
Query: 644 FSIPQANQSHSGEYHCTGFIGKMSYSSQSVNITVQGSSLNNLLXXXXXXXXXXXXXXXXX 823
FSIP+AN SHSG+YHCT FIGKM +SSQ VNITVQ SS +
Sbjct: 180 FSIPRANLSHSGQYHCTAFIGKMLHSSQPVNITVQESSSSGPSSMTAVAIGTCFAAVAIV 239
Query: 824 XXXXXWFRLRPKRISANHTDAE-EAAKIXAERYITYSLLLH 943
WFRLR K ISA TDAE +AA+ AE +TYSLL H
Sbjct: 240 AAIITWFRLRRKPISAGLTDAENDAARTEAENTVTYSLLSH 280
>ref|NP_001103276.1| Fc fragment of IgG, low affinity IIc, receptor for (CD32) [Bos
taurus].
Length = 278
Score = 311 bits (796), Expect = 7e-85
Identities = 150/215 (69%), Positives = 168/215 (78%)
Frame = +2
Query: 104 MGIPSFLALPAARSDWADCMPCHPLGHMLLWTALLFLAPVPGTHAVLPKAEVKLQPAWIN 283
MGIPSFLA PAAR + A C P HP GHMLLWTAL FLAPVPG A LPKA V +QPAWIN
Sbjct: 1 MGIPSFLAFPAARRNRAHCTPWHPWGHMLLWTALPFLAPVPGKCADLPKAVVSIQPAWIN 60
Query: 284 VLQEDSVTLTCQGDHDPGNTTTQWFHNGNFTWTENQPSFSFKARRASSGYYRCQTAYSSL 463
VL+ED VTL CQG T WFHNG+ T+ QPS+SF+A G YRCQ +SL
Sbjct: 61 VLREDHVTLMCQGTSFSAGNLTTWFHNGSSIHTQKQPSYSFRAGSNDGGSYRCQREQTSL 120
Query: 464 SDPVHLDVISDWLLLQTSSLVFQEGEPILLRCHSWRNKPLHKVAFFQNGKSKKFSYVDSN 643
SDPVHLDVISDWLLLQT SLVFQEGEPI+LRCHSWRN+PL+K+ F+Q+GKSK FSY +N
Sbjct: 121 SDPVHLDVISDWLLLQTPSLVFQEGEPIMLRCHSWRNQPLNKITFYQDGKSKTFSYQRTN 180
Query: 644 FSIPQANQSHSGEYHCTGFIGKMSYSSQSVNITVQ 748
FSIP+AN SH G+YHCT FIGKM +SSQ VNITVQ
Sbjct: 181 FSIPRANLSHRGQYHCTAFIGKMLHSSQPVNITVQ 215
>ref|NP_776963.1| high affinity immunoglobulin gamma Fc receptor I [Bos taurus].
Length = 349
Score = 175 bits (444), Expect = 5e-44
Identities = 88/188 (46%), Positives = 123/188 (65%), Gaps = 2/188 (1%)
Frame = +2
Query: 191 LWTALLFLAPVPGTHAVLP-KAEVKLQPAWINVLQEDSVTLTCQGDHDPGNTTTQWFHNG 367
+W + + P V P KA + L+P W++V QE++VTL C+G H PG+T TQWF NG
Sbjct: 1 MWLIIALILGAPVAEQVDPTKAVITLKPPWVSVFQEENVTLLCEGPHRPGDTATQWFLNG 60
Query: 368 NFTWTENQPSFSFK-ARRASSGYYRCQTAYSSLSDPVHLDVISDWLLLQTSSLVFQEGEP 544
T P +S A SG Y+CQT S LSDPV L++ SDWLLLQ +S VF EG+P
Sbjct: 61 TAIKTL-APRYSINSATFDDSGEYKCQTGLSMLSDPVQLEIHSDWLLLQVTSRVFTEGDP 119
Query: 545 ILLRCHSWRNKPLHKVAFFQNGKSKKFSYVDSNFSIPQANQSHSGEYHCTGFIGKMSYSS 724
+ LRCH+W+N P++K+ F+++GK +FS DS F+I Q N SH+G YHC+G + Y+S
Sbjct: 120 LALRCHAWKNMPVYKMLFYKDGKPFRFSSQDSEFTILQTNLSHNGIYHCSG-ERRRRYTS 178
Query: 725 QSVNITVQ 748
V+IT++
Sbjct: 179 AGVSITIK 186
>ref|NP_001070870.1| low affinity immunoglobulin gamma Fc region receptor III isoform 1
[Bos taurus].
Length = 250
Score = 166 bits (421), Expect = 2e-41
Identities = 84/183 (45%), Positives = 111/183 (60%)
Frame = +2
Query: 200 ALLFLAPVPGTHAVLPKAEVKLQPAWINVLQEDSVTLTCQGDHDPGNTTTQWFHNGNFTW 379
ALL L A KA V L P W +VL D VTL CQGD+ + +T+W+HNG
Sbjct: 9 ALLLLVSADTQTADPSKAVVLLDPQWNHVLTNDRVTLKCQGDYPVEDNSTKWWHNGTLIS 68
Query: 380 TENQPSFSFKARRASSGYYRCQTAYSSLSDPVHLDVISDWLLLQTSSLVFQEGEPILLRC 559
++ F + SG Y+CQT S+ SDPV L+V WLLLQ + V G+PI L+C
Sbjct: 69 SQTPSYFIADVKVQDSGEYKCQTGLSAPSDPVKLEVHVGWLLLQVAQRVVNVGKPIRLKC 128
Query: 560 HSWRNKPLHKVAFFQNGKSKKFSYVDSNFSIPQANQSHSGEYHCTGFIGKMSYSSQSVNI 739
HSW+ P+ KV +F+NG+ KK+S+ +S+F IP+A HSG Y C G IG + SS+SV I
Sbjct: 129 HSWKKTPVAKVQYFRNGRGKKYSHGNSDFHIPEAKLEHSGSYFCRGIIGSKNESSESVQI 188
Query: 740 TVQ 748
TVQ
Sbjct: 189 TVQ 191
>ref|NP_001093780.1| high affinity immunoglobulin epsilon receptor subunit alpha [Bos
taurus].
Length = 260
Score = 155 bits (392), Expect = 5e-38
Identities = 79/197 (40%), Positives = 118/197 (59%), Gaps = 1/197 (0%)
Frame = +2
Query: 161 MPCHPLGH-MLLWTALLFLAPVPGTHAVLPKAEVKLQPAWINVLQEDSVTLTCQGDHDPG 337
MP P+G LLW ALL +P G A + K++V L P W +L+ D+VTLTC +
Sbjct: 1 MPTIPMGAPALLWIALLLFSP-DGMSAAIWKSKVSLNPPWRKILKGDAVTLTCGTNGSSE 59
Query: 338 NTTTQWFHNGNFTWTENQPSFSFKARRASSGYYRCQTAYSSLSDPVHLDVISDWLLLQTS 517
+ ++ W HNG T N KAR SG Y+C+ ++S+PV+L+VISDWL++Q S
Sbjct: 60 DQSSLWIHNGTSFTTNNSRWHIVKARMQDSGEYQCRIKGFAISEPVYLNVISDWLIIQAS 119
Query: 518 SLVFQEGEPILLRCHSWRNKPLHKVAFFQNGKSKKFSYVDSNFSIPQANQSHSGEYHCTG 697
+ V EGE + LRCHSW+N + KV ++++ K+ K+ Y + N SI + +SG Y+C G
Sbjct: 120 AEVMMEGESLFLRCHSWKNLNVFKVIYYKDNKALKYWYENHNISITNVTEGNSGIYYCVG 179
Query: 698 FIGKMSYSSQSVNITVQ 748
I ++ Y S + I V+
Sbjct: 180 RIQRLPYISNKLKIIVK 196
>ref|NP_001179494.1| Fc receptor-like B [Bos taurus].
Length = 417
Score = 117 bits (294), Expect = 1e-26
Identities = 63/192 (32%), Positives = 98/192 (51%), Gaps = 8/192 (4%)
Frame = +2
Query: 197 TALLFLAPVPGTHAVLPKAEVKLQPAWINVLQEDSVTLTCQGDH----DPGNTTTQWFHN 364
T LL L P G A K + L P W + + + VTL C G H + +T W+
Sbjct: 5 TVLLLLVPSSGQAATPEKPILSLHPPWTTIFKGEKVTLRCDGYHPLLLELRPISTLWYLG 64
Query: 365 GNFTWTENQPSFSFKARRASSGYYRCQTAYSSLSDPVHLDVISDWLLLQTSSLVFQEGEP 544
PS+ + G YRCQT + +SDP+HL V +DWL+LQ EGEP
Sbjct: 65 HLLL-----PSYKKSIEVHTPGVYRCQTRGAPVSDPIHLSVSNDWLILQVPYAAVFEGEP 119
Query: 545 ILLRCHSWRNKPLHKVAFFQNGKSKKFSYVDSNFSIPQANQSHSGEYHCTGF----IGKM 712
+++RC W +K ++K+ ++ +G+ ++ + +N+++PQA S SG Y C+G +
Sbjct: 120 LVMRCRGWYDKTVYKLHYYHDGQPVRYFHSSANYTVPQARASDSGRYQCSGTMRIPVESA 179
Query: 713 SYSSQSVNITVQ 748
S V +TVQ
Sbjct: 180 PMFSAKVAVTVQ 191
>ref|XP_002685894.1| PREDICTED: Fc receptor-like B-like [Bos taurus].
Length = 417
Score = 117 bits (294), Expect = 1e-26
Identities = 63/192 (32%), Positives = 98/192 (51%), Gaps = 8/192 (4%)
Frame = +2
Query: 197 TALLFLAPVPGTHAVLPKAEVKLQPAWINVLQEDSVTLTCQGDH----DPGNTTTQWFHN 364
T LL L P G A K + L P W + + + VTL C G H + +T W+
Sbjct: 5 TVLLLLVPSSGQAATPEKPILSLHPPWTTIFKGEKVTLRCDGYHPLLLELRPISTLWYLG 64
Query: 365 GNFTWTENQPSFSFKARRASSGYYRCQTAYSSLSDPVHLDVISDWLLLQTSSLVFQEGEP 544
PS+ + G YRCQT + +SDP+HL V +DWL+LQ EGEP
Sbjct: 65 HLLL-----PSYKKSIEVHTPGVYRCQTRGAPVSDPIHLSVSNDWLILQVPYAAVFEGEP 119
Query: 545 ILLRCHSWRNKPLHKVAFFQNGKSKKFSYVDSNFSIPQANQSHSGEYHCTGF----IGKM 712
+++RC W +K ++K+ ++ +G+ ++ + +N+++PQA S SG Y C+G +
Sbjct: 120 LVMRCRGWYDKTVYKLHYYHDGQPVRYFHSSANYTVPQARASDSGRYQCSGTMRIPVESA 179
Query: 713 SYSSQSVNITVQ 748
S V +TVQ
Sbjct: 180 PMFSAKVAVTVQ 191
>ref|XP_002686001.1| PREDICTED: Fc receptor-like 3 [Bos taurus].
Length = 759
Score = 89.4 bits (220), Expect = 4e-18
Identities = 54/155 (34%), Positives = 83/155 (53%)
Frame = +2
Query: 239 VLPKAEVKLQPAWINVLQEDSVTLTCQGDHDPGNTTTQWFHNGNFTWTENQPSFSFKARR 418
V PKA + L P W +D VTLTC+ P W++N N N+ S + +
Sbjct: 61 VTPKAFLLLNPPWSTNFHKDEVTLTCRDSLSPAQGDIYWYYNENLL---NKKSEEIQIHK 117
Query: 419 ASSGYYRCQTAYSSLSDPVHLDVISDWLLLQTSSLVFQEGEPILLRCHSWRNKPLHKVAF 598
+GYY+C+T SSLSDPVH+D D L+LQ VF EG+ ++LRC + + + F
Sbjct: 118 --TGYYKCKTQRSSLSDPVHVDFSFDKLILQAPHSVF-EGDEVVLRCQA--REEAKEKRF 172
Query: 599 FQNGKSKKFSYVDSNFSIPQANQSHSGEYHCTGFI 703
++N + SNF++ Q+ ++ +YHCT +
Sbjct: 173 YRNE-----IQIQSNFTL-QSVSMNNDKYHCTALV 201
>ref|XP_593037.5| PREDICTED: Fc receptor-like 3 [Bos taurus].
Length = 876
Score = 89.4 bits (220), Expect = 4e-18
Identities = 54/155 (34%), Positives = 83/155 (53%)
Frame = +2
Query: 239 VLPKAEVKLQPAWINVLQEDSVTLTCQGDHDPGNTTTQWFHNGNFTWTENQPSFSFKARR 418
V PKA + L P W +D VTLTC+ P W++N N N+ S + +
Sbjct: 61 VTPKAFLLLNPPWSTNFHKDEVTLTCRDSLSPAQGDIYWYYNENLL---NKKSEEIQIHK 117
Query: 419 ASSGYYRCQTAYSSLSDPVHLDVISDWLLLQTSSLVFQEGEPILLRCHSWRNKPLHKVAF 598
+GYY+C+T SSLSDPVH+D D L+LQ VF EG+ ++LRC + + + F
Sbjct: 118 --TGYYKCKTQRSSLSDPVHVDFSFDKLILQAPHSVF-EGDEVVLRCQA--REEAKEKRF 172
Query: 599 FQNGKSKKFSYVDSNFSIPQANQSHSGEYHCTGFI 703
++N + SNF++ Q+ ++ +YHCT +
Sbjct: 173 YRNE-----IQIQSNFTL-QSVSMNNDKYHCTALV 201
>ref|XP_002686003.1| PREDICTED: Fc receptor-like 4-like [Bos taurus].
Length = 478
Score = 79.0 bits (193), Expect = 6e-15
Identities = 64/178 (35%), Positives = 86/178 (48%), Gaps = 5/178 (2%)
Frame = +2
Query: 185 MLLWTALLFLAPVPGTHAVLPKAEVKLQPAWINVLQEDSVTLTCQGDHDPGNTTTQ---W 355
+LLW + L LA V K+ + +QP W V + V LTC G H Q W
Sbjct: 7 VLLWASFLVLATVH-------KSVISVQPPWTTVFHGERVNLTCNGFHFYAQEKLQGYRW 59
Query: 356 FHNGNFTWTENQPSFSFKARRASSGYYRCQTAYSSLSDPVHLDVISDWLLLQTSSLVFQE 535
F +G E P + + R SG YRCQ S S+PVHL S L+LQ VF E
Sbjct: 60 F-SGKARPRET-PGNTLEVR--DSGQYRCQAPGSLPSNPVHLIFSSASLILQAPYSVF-E 114
Query: 536 GEPILLRCHSWRNKPLHKVAFFQNGKSKKFSYVDSNFS--IPQANQSHSGEYHCTGFI 703
G+ ++LRC + L V + N K S D +F IP+A+ ++SG Y C GF+
Sbjct: 115 GDELVLRCQKRGREKLAVVKYTWN--RKIISGTDESFDLLIPKASLNNSGCYQCIGFL 170
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 37,906,839
Number of extensions: 1121821
Number of successful extensions: 6384
Number of sequences better than 1.0e-05: 16
Number of HSP's gapped: 6146
Number of HSP's successfully gapped: 16
Length of query: 315
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 213
Effective length of database: 14,306,398
Effective search space: 3047262774
Effective search space used: 3047262774
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002767
(945 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_545775.2| PREDICTED: similar to Fc receptor-like and muci... 287 1e-77
Alignment gi|XP_536141.2| PREDICTED: similar to Low affinity immunoglobul... 184 8e-47
Alignment gi|XP_855551.1| PREDICTED: high affinity IgG Fc gamma receptor ... 169 3e-42
Alignment gi|NP_001002976.1| high affinity immunoglobulin gamma Fc recept... 168 8e-42
Alignment gi|NP_001104236.1| high affinity immunoglobulin epsilon recepto... 147 1e-35
Alignment gi|XP_547521.2| PREDICTED: similar to Fc receptor-like 4 [Canis... 95 8e-20
Alignment gi|XP_852095.1| PREDICTED: similar to Fc receptor-like and muci... 60 4e-09
Alignment gi|XP_854859.1| PREDICTED: similar to Fc receptor-like 2 [Canis... 50 4e-06
>ref|XP_545775.2| PREDICTED: similar to Fc receptor-like and mucin-like 1 [Canis
familiaris].
Length = 774
Score = 287 bits (734), Expect = 1e-77
Identities = 159/291 (54%), Positives = 186/291 (63%), Gaps = 2/291 (0%)
Frame = +2
Query: 2 LQNLSVLWGGIXXXXXXXXXXXXXXXXTCVLQEVMGIPSFLALPAARSDWADCMPCH-PL 178
L NLSVLWGGI V QE+M I S L+LPAA SD A CMPC L
Sbjct: 105 LMNLSVLWGGICQISREACACHTGAARADVCQELMRILSVLSLPAADSDQAGCMPCLCRL 164
Query: 179 GHMLLWTALLFLAPVPGTHAVLPKAEVKLQPAWINVLQEDSVTLTCQGDHDPGNTTTQWF 358
G MLLW ALL LAPV GT A LPK+ + L+P WINVLQ DSVTL CQG H TQW+
Sbjct: 165 GDMLLWAALLLLAPVAGTPAGLPKSVLDLEPPWINVLQGDSVTLKCQGAHR-AEEHTQWY 223
Query: 359 HNGNFTWTENQPSFSFKARRASSGYYRCQTAYSSLSDPVHLDVISDWLLLQTSSLVFQEG 538
HNG+F Q ++SF+A++ SG YRCQ +S+SDPVHLDV SDWLLLQT LVFQ+G
Sbjct: 224 HNGSFLPILVQSNYSFEAKKQDSGEYRCQMYQTSVSDPVHLDVTSDWLLLQTPRLVFQKG 283
Query: 539 EPILLRCHSWRNKPLHKVAFFQNGKSKKFSYVDSNFSIPQANQSHSGEYHCTGFIGKMSY 718
E I LRCHSW+NK L+K+ FFQNGKSK+FS ++S F IP+AN SHSG YHCTG IG+M
Sbjct: 284 ESIRLRCHSWKNKLLYKITFFQNGKSKQFSSLNSTFFIPEANLSHSGHYHCTGMIGQMLR 343
Query: 719 SSQSVNITVQGS-SLNNLLXXXXXXXXXXXXXXXXXXXXXXWFRLRPKRIS 868
SQ V ITVQGS S ++ + W RLR K+ S
Sbjct: 344 LSQPVAITVQGSDSSDSSVVMTIVSAVAGTAVAAILAAVVAWLRLRRKQTS 394
Score = 67.8 bits (164), Expect = 1e-11
Identities = 31/82 (37%), Positives = 48/82 (58%)
Frame = +2
Query: 458 SLSDPVHLDVISDWLLLQTSSLVFQEGEPILLRCHSWRNKPLHKVAFFQNGKSKKFSYVD 637
+ S P HL V DWL+LQ EG+P+ LRC +W++ PL +V F+++G + +
Sbjct: 480 TFSKPFHLIVSYDWLILQGPVSPIFEGDPLTLRCQAWQDWPLAQVTFYRDGSAMGPPGPN 539
Query: 638 SNFSIPQANQSHSGEYHCTGFI 703
FSI ++ SG YHC+G +
Sbjct: 540 REFSIAVVQETDSGHYHCSGIL 561
>ref|XP_536141.2| PREDICTED: similar to Low affinity immunoglobulin gamma Fc region
receptor III-A precursor (IgG Fc receptor III-2)
(Fc-gamma RIII-alpha) (Fc-gamma RIIIa) (FcRIIIa)
(Fc-gamma RIII) (FcRIII) (Antigen CD16-A) (FcR-10)
[Canis familiaris].
Length = 248
Score = 184 bits (468), Expect = 8e-47
Identities = 99/188 (52%), Positives = 118/188 (62%)
Frame = +2
Query: 197 TALLFLAPVPGTHAVLPKAEVKLQPAWINVLQEDSVTLTCQGDHDPGNTTTQWFHNGNFT 376
TALL L GT A +PKA V L+P W VL DSVTL CQGDH + T W HNG
Sbjct: 8 TALLLLVSA-GTQADVPKAVVVLEPKWNRVLTMDSVTLKCQGDHLLRDNYT-WLHNGRPI 65
Query: 377 WTENQPSFSFKARRASSGYYRCQTAYSSLSDPVHLDVISDWLLLQTSSLVFQEGEPILLR 556
+ A +SG YRCQT S LSDPV L+V + WLLLQ LVFQEGE I L+
Sbjct: 66 SNQISTYIIKNASIKNSGEYRCQTDQSKLSDPVQLEVHTGWLLLQVPRLVFQEGELIQLK 125
Query: 557 CHSWRNKPLHKVAFFQNGKSKKFSYVDSNFSIPQANQSHSGEYHCTGFIGKMSYSSQSVN 736
CHSW+N P+ V +FQNG+ KKF Y +S + IP A H+G Y C G IGK + SS++VN
Sbjct: 126 CHSWKNTPVRNVQYFQNGRGKKFFYNNSEYHIPAATSEHNGSYFCRGIIGKKNESSEAVN 185
Query: 737 ITVQGSSL 760
I +QGSSL
Sbjct: 186 IIIQGSSL 193
>ref|XP_855551.1| PREDICTED: high affinity IgG Fc gamma receptor 1 [Canis
familiaris].
Length = 372
Score = 169 bits (428), Expect = 3e-42
Identities = 89/189 (47%), Positives = 117/189 (61%), Gaps = 1/189 (0%)
Frame = +2
Query: 185 MLLWTALLFLAPVPGTHAVLPKAEVKLQPAWINVLQEDSVTLTCQGDHDPGNTTTQWFHN 364
M L T LL P G KA + LQP W++V QE+SVTL C+G H PG+++TQWF N
Sbjct: 1 MWLLTVLLLWVPA-GAQTDPVKAVITLQPPWVSVFQEESVTLWCEGPHLPGDSSTQWFLN 59
Query: 365 GNFTWTENQPSFSFKARRAS-SGYYRCQTAYSSLSDPVHLDVISDWLLLQTSSLVFQEGE 541
G T T P + A + +G YRCQT S LSDP+ L++ DWL+LQ S VF EGE
Sbjct: 60 GTATQTLT-PRYRIAAASVNDNGEYRCQTGLSVLSDPIQLEIHRDWLILQVSGRVFTEGE 118
Query: 542 PILLRCHSWRNKPLHKVAFFQNGKSKKFSYVDSNFSIPQANQSHSGEYHCTGFIGKMSYS 721
P+ LRCH W NK ++ V F+QNG KFS +S F+I + H+G YHC+ +GK Y
Sbjct: 119 PLTLRCHGWNNKLVYNVLFYQNGTVLKFSPQNSEFTILKTTLHHNGIYHCSA-MGKHRYE 177
Query: 722 SQSVNITVQ 748
S V+IT++
Sbjct: 178 SAGVSITIK 186
>ref|NP_001002976.1| high affinity immunoglobulin gamma Fc receptor I [Canis lupus
familiaris].
Length = 372
Score = 168 bits (425), Expect = 8e-42
Identities = 89/189 (47%), Positives = 116/189 (61%), Gaps = 1/189 (0%)
Frame = +2
Query: 185 MLLWTALLFLAPVPGTHAVLPKAEVKLQPAWINVLQEDSVTLTCQGDHDPGNTTTQWFHN 364
M L T LL P G KA + LQP W++V QE+SVTL C+G H PG+++TQWF N
Sbjct: 1 MWLLTVLLLWVPA-GAQTDPVKAVITLQPPWVSVFQEESVTLWCEGPHLPGDSSTQWFLN 59
Query: 365 GNFTWTENQPSFSFKARRAS-SGYYRCQTAYSSLSDPVHLDVISDWLLLQTSSLVFQEGE 541
G T T P + A + +G YRCQT S LSDP+ L + DWL+LQ S VF EGE
Sbjct: 60 GTATQTLT-PRYRIAAASVNDNGEYRCQTGLSVLSDPIQLGIHRDWLILQVSGRVFTEGE 118
Query: 542 PILLRCHSWRNKPLHKVAFFQNGKSKKFSYVDSNFSIPQANQSHSGEYHCTGFIGKMSYS 721
P+ LRCH W NK ++ V F+QNG KFS +S F+I + H+G YHC+ +GK Y
Sbjct: 119 PLTLRCHGWNNKLVYNVLFYQNGTVLKFSPQNSEFTILKTTLHHNGIYHCSA-MGKHRYE 177
Query: 722 SQSVNITVQ 748
S V+IT++
Sbjct: 178 SAGVSITIK 186
>ref|NP_001104236.1| high affinity immunoglobulin epsilon receptor subunit alpha [Canis
lupus familiaris].
Length = 252
Score = 147 bits (372), Expect = 1e-35
Identities = 81/197 (41%), Positives = 113/197 (57%), Gaps = 1/197 (0%)
Frame = +2
Query: 161 MPCHPLGHMLLWTALLFLAPVPGTHAVLPKAEVKLQPAWINVLQEDSVTLTCQGDHDPGN 340
MP G LLW ALL +P + L K V + P W +L++DSVTLTC G++
Sbjct: 1 MPASMGGPALLWLALLLSSPGVMSSDTL-KPTVSMNPPWNTILKDDSVTLTCTGNNSLEV 59
Query: 341 TTTQWFHNGNFTWTENQPSFSF-KARRASSGYYRCQTAYSSLSDPVHLDVISDWLLLQTS 517
+ W HN N TW E KA+ SG YRC+ S LSDPV+L V ++WL+LQ S
Sbjct: 60 DSAVWLHN-NTTWQETTSRLDINKAQIQDSGEYRCRENRSILSDPVYLTVFTEWLILQAS 118
Query: 518 SLVFQEGEPILLRCHSWRNKPLHKVAFFQNGKSKKFSYVDSNFSIPQANQSHSGEYHCTG 697
+ V EGE L+RCHSW+N L KV ++++G ++ Y + N SI +SG Y C+G
Sbjct: 119 ANVVMEGESFLIRCHSWKNLRLTKVTYYKDGIPIRYWYENFNISISNVTTKNSGNYSCSG 178
Query: 698 FIGKMSYSSQSVNITVQ 748
I + Y+S+ +NI V+
Sbjct: 179 QIQQKGYTSKVLNIIVK 195
>ref|XP_547521.2| PREDICTED: similar to Fc receptor-like 4 [Canis familiaris].
Length = 1052
Score = 95.1 bits (235), Expect = 8e-20
Identities = 64/181 (35%), Positives = 87/181 (48%), Gaps = 3/181 (1%)
Frame = +2
Query: 215 APVPGTHAVLPKAEVKLQPAWINVLQEDSVTLTCQGDH---DPGNTTTQWFHNGNFTWTE 385
APV G +PKA + L P W + D+VTLTC H QW+
Sbjct: 486 APVSGQFEAVPKAVISLHPPWTVFFKGDAVTLTCHVSHIYTAKNRELYQWYLGTEIL--R 543
Query: 386 NQPSFSFKARRASSGYYRCQTAYSSLSDPVHLDVISDWLLLQTSSLVFQEGEPILLRCHS 565
P + K + +SG Y+CQT S LSD V L + L+LQ VF EG+ + L+C +
Sbjct: 544 EIPGNTLKVQ--NSGEYKCQTQNSLLSDGVTLIFSTAKLILQAPPSVF-EGDSVTLKCQA 600
Query: 566 WRNKPLHKVAFFQNGKSKKFSYVDSNFSIPQANQSHSGEYHCTGFIGKMSYSSQSVNITV 745
+ L + ++NGK K S+F I QA +GEYHC G S+SS + I V
Sbjct: 601 NVDLALKNKSLYKNGKMLKILDESSSFHIQQAGLKDNGEYHCAGSEINCSFSSNRIKIQV 660
Query: 746 Q 748
Q
Sbjct: 661 Q 661
Score = 88.2 bits (217), Expect = 1e-17
Identities = 60/167 (35%), Positives = 79/167 (47%), Gaps = 2/167 (1%)
Frame = +2
Query: 236 AVLPKAEVKLQPAWINVLQEDSVTLTCQGDHDPGNTTTQWFHNGNF--TWTENQPSFSFK 409
A PK + L P W V + ++VTLTC H W H F P + K
Sbjct: 26 AAAPKPVISLHPPWTVVFKGETVTLTCHVPHLRAAEYITW-HLSYFGKDLLHKTPGNTLK 84
Query: 410 ARRASSGYYRCQTAYSSLSDPVHLDVISDWLLLQTSSLVFQEGEPILLRCHSWRNKPLHK 589
SG +RCQT S SD V L SDWL+LQ VF EG+ ++LRC + L
Sbjct: 85 VH--DSGRFRCQTKDSPPSDSVRLIFSSDWLILQAPHTVF-EGDTLVLRCQVKGRQKLIT 141
Query: 590 VAFFQNGKSKKFSYVDSNFSIPQANQSHSGEYHCTGFIGKMSYSSQS 730
V + NGK S + IPQA+ ++SG Y C GF+ + Y +S
Sbjct: 142 VKYSWNGKVISVSNQGQDLLIPQASLNNSGHYQCIGFLERDHYVYKS 188
>ref|XP_852095.1| PREDICTED: similar to Fc receptor-like and mucin-like 2 isoform a
[Canis familiaris].
Length = 306
Score = 59.7 bits (143), Expect = 4e-09
Identities = 40/121 (33%), Positives = 58/121 (47%), Gaps = 6/121 (4%)
Frame = +2
Query: 176 LGHMLLW--TALLFLAPVPGTHAVLPKAEVKLQPAWINVLQEDSVTLTCQGDH----DPG 337
+G +W TALL L P G A L K + L P W + + + VTL C G H +
Sbjct: 62 VGRASMWPLTALLLLVPSSGQAATLEKPILSLHPPWTTIFKGERVTLRCDGYHPLLLELR 121
Query: 338 NTTTQWFHNGNFTWTENQPSFSFKARRASSGYYRCQTAYSSLSDPVHLDVISDWLLLQTS 517
+T W+ G+ ++ S + + G YRCQT + +SDP+HL V + L S
Sbjct: 122 PISTLWY-LGHLLLPSHKKSIEVQ----TPGVYRCQTRGAPVSDPIHLSVSNGSALPSAS 176
Query: 518 S 520
S
Sbjct: 177 S 177
>ref|XP_854859.1| PREDICTED: similar to Fc receptor-like 2 [Canis familiaris].
Length = 462
Score = 49.7 bits (117), Expect = 4e-06
Identities = 33/91 (36%), Positives = 49/91 (53%), Gaps = 5/91 (5%)
Frame = +2
Query: 491 SDWLLLQTSSLVFQEGEPILLRCHSWRNK-PLHKVAFFQNGKSKKFSYVDSNFSIPQANQ 667
+DWL L+ S +F EG+ I L C +K + +A++++GK FS +FSIP A
Sbjct: 25 ADWLTLRAPSAIF-EGDRIDLICQRKTDKWKIQTMAYYKDGKKLHFSNEVFSFSIPSAVL 83
Query: 668 SHSGEYHCTG----FIGKMSYSSQSVNITVQ 748
S SG Y C+ ++ S S S+ I VQ
Sbjct: 84 SDSGSYSCSATVRIYLRYYSKKSNSIKIQVQ 114
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 39,347,651
Number of extensions: 1143095
Number of successful extensions: 6389
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 6131
Number of HSP's successfully gapped: 10
Length of query: 315
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 212
Effective length of database: 15,440,896
Effective search space: 3273469952
Effective search space used: 3273469952
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002767
(945 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001002274.1| low affinity immunoglobulin gamma Fc region ... 324 8e-89
Alignment gi|NP_001002273.1| low affinity immunoglobulin gamma Fc region ... 320 2e-87
Alignment gi|NP_003992.3| low affinity immunoglobulin gamma Fc region rec... 312 2e-85
Alignment gi|NP_001002275.1| low affinity immunoglobulin gamma Fc region ... 308 5e-84
Alignment gi|NP_963857.3| low affinity immunoglobulin gamma Fc region rec... 303 1e-82
Alignment gi|NP_001177757.1| low affinity immunoglobulin gamma Fc region ... 296 1e-80
Alignment gi|NP_001129691.1| low affinity immunoglobulin gamma Fc region ... 248 7e-66
Alignment gi|NP_067674.2| low affinity immunoglobulin gamma Fc region rec... 244 6e-65
Alignment gi|NP_000561.3| low affinity immunoglobulin gamma Fc region rec... 184 8e-47
Alignment gi|NP_001121064.1| low affinity immunoglobulin gamma Fc region ... 183 2e-46
>ref|NP_001002274.1| low affinity immunoglobulin gamma Fc region receptor II-b isoform 3
precursor [Homo sapiens].
Length = 291
Score = 324 bits (830), Expect = 8e-89
Identities = 167/280 (59%), Positives = 191/280 (68%)
Frame = +2
Query: 104 MGIPSFLALPAARSDWADCMPCHPLGHMLLWTALLFLAPVPGTHAVLPKAEVKLQPAWIN 283
MGI SFL + A SDWADC P GHMLLWTA+LFLAPV GT A PKA +KL+P WIN
Sbjct: 1 MGILSFLPVLATESDWADCKSPQPWGHMLLWTAVLFLAPVAGTPAAPPKAVLKLEPQWIN 60
Query: 284 VLQEDSVTLTCQGDHDPGNTTTQWFHNGNFTWTENQPSFSFKARRASSGYYRCQTAYSSL 463
VLQEDSVTLTC+G H P + + QWFHNGN T QPS+ FKA SG Y CQT +SL
Sbjct: 61 VLQEDSVTLTCRGTHSPESDSIQWFHNGNLIPTHTQPSYRFKANNNDSGEYTCQTGQTSL 120
Query: 464 SDPVHLDVISDWLLLQTSSLVFQEGEPILLRCHSWRNKPLHKVAFFQNGKSKKFSYVDSN 643
SDPVHL V+S+WL+LQT L FQEGE I+LRCHSW++KPL KV FFQNGKSKKFS D N
Sbjct: 121 SDPVHLTVLSEWLVLQTPHLEFQEGETIVLRCHSWKDKPLVKVTFFQNGKSKKFSRSDPN 180
Query: 644 FSIPQANQSHSGEYHCTGFIGKMSYSSQSVNITVQGSSLNNLLXXXXXXXXXXXXXXXXX 823
FSIPQAN SHSG+YHCTG IG YSS+ V ITVQ S + +
Sbjct: 181 FSIPQANHSHSGDYHCTGNIGYTLYSSKPVTITVQAPSSSPMGIIVAVVTGIAVAAIVAA 240
Query: 824 XXXXXWFRLRPKRISANHTDAEEAAKIXAERYITYSLLLH 943
+ R KRISAN T+ +EA K+ AE ITYSLL+H
Sbjct: 241 VVALIY--CRKKRISANPTNPDEADKVGAENTITYSLLMH 278
>ref|NP_001002273.1| low affinity immunoglobulin gamma Fc region receptor II-b isoform 2
precursor [Homo sapiens].
Length = 290
Score = 320 bits (819), Expect = 2e-87
Identities = 167/280 (59%), Positives = 191/280 (68%)
Frame = +2
Query: 104 MGIPSFLALPAARSDWADCMPCHPLGHMLLWTALLFLAPVPGTHAVLPKAEVKLQPAWIN 283
MGI SFL + A SDWADC P GHMLLWTA+LFLAPV GT A PKA +KL+P WIN
Sbjct: 1 MGILSFLPVLATESDWADCKSPQPWGHMLLWTAVLFLAPVAGTPAP-PKAVLKLEPQWIN 59
Query: 284 VLQEDSVTLTCQGDHDPGNTTTQWFHNGNFTWTENQPSFSFKARRASSGYYRCQTAYSSL 463
VLQEDSVTLTC+G H P + + QWFHNGN T QPS+ FKA SG Y CQT +SL
Sbjct: 60 VLQEDSVTLTCRGTHSPESDSIQWFHNGNLIPTHTQPSYRFKANNNDSGEYTCQTGQTSL 119
Query: 464 SDPVHLDVISDWLLLQTSSLVFQEGEPILLRCHSWRNKPLHKVAFFQNGKSKKFSYVDSN 643
SDPVHL V+S+WL+LQT L FQEGE I+LRCHSW++KPL KV FFQNGKSKKFS D N
Sbjct: 120 SDPVHLTVLSEWLVLQTPHLEFQEGETIVLRCHSWKDKPLVKVTFFQNGKSKKFSRSDPN 179
Query: 644 FSIPQANQSHSGEYHCTGFIGKMSYSSQSVNITVQGSSLNNLLXXXXXXXXXXXXXXXXX 823
FSIPQAN SHSG+YHCTG IG YSS+ V ITVQ S + +
Sbjct: 180 FSIPQANHSHSGDYHCTGNIGYTLYSSKPVTITVQAPSSSPMGIIVAVVTGIAVAAIVAA 239
Query: 824 XXXXXWFRLRPKRISANHTDAEEAAKIXAERYITYSLLLH 943
+ R KRISAN T+ +EA K+ AE ITYSLL+H
Sbjct: 240 VVALIY--CRKKRISANPTNPDEADKVGAENTITYSLLMH 277
>ref|NP_003992.3| low affinity immunoglobulin gamma Fc region receptor II-b isoform 1
precursor [Homo sapiens].
Length = 310
Score = 312 bits (800), Expect = 2e-85
Identities = 167/299 (55%), Positives = 191/299 (63%), Gaps = 19/299 (6%)
Frame = +2
Query: 104 MGIPSFLALPAARSDWADCMPCHPLGHMLLWTALLFLAPVPGTHAVLPKAEVKLQPAWIN 283
MGI SFL + A SDWADC P GHMLLWTA+LFLAPV GT A PKA +KL+P WIN
Sbjct: 1 MGILSFLPVLATESDWADCKSPQPWGHMLLWTAVLFLAPVAGTPAAPPKAVLKLEPQWIN 60
Query: 284 VLQEDSVTLTCQGDHDPGNTTTQWFHNGNFTWTENQPSFSFKARRASSGYYRCQTAYSSL 463
VLQEDSVTLTC+G H P + + QWFHNGN T QPS+ FKA SG Y CQT +SL
Sbjct: 61 VLQEDSVTLTCRGTHSPESDSIQWFHNGNLIPTHTQPSYRFKANNNDSGEYTCQTGQTSL 120
Query: 464 SDPVHLDVISDWLLLQTSSLVFQEGEPILLRCHSWRNKPLHKVAFFQNGKSKKFSYVDSN 643
SDPVHL V+S+WL+LQT L FQEGE I+LRCHSW++KPL KV FFQNGKSKKFS D N
Sbjct: 121 SDPVHLTVLSEWLVLQTPHLEFQEGETIVLRCHSWKDKPLVKVTFFQNGKSKKFSRSDPN 180
Query: 644 FSIPQANQSHSGEYHCTGFIGKMSYSSQSVNITVQGSSLNNLLXXXXXXXXXXXXXXXXX 823
FSIPQAN SHSG+YHCTG IG YSS+ V ITVQ S + +
Sbjct: 181 FSIPQANHSHSGDYHCTGNIGYTLYSSKPVTITVQAPSSSPMGIIVAVVTGIAVAAIVAA 240
Query: 824 XXXXXWFRLRPKRIS-------------------ANHTDAEEAAKIXAERYITYSLLLH 943
+ R KRIS AN T+ +EA K+ AE ITYSLL+H
Sbjct: 241 VVALIY--CRKKRISALPGYPECREMGETLPEKPANPTNPDEADKVGAENTITYSLLMH 297
>ref|NP_001002275.1| low affinity immunoglobulin gamma Fc region receptor II-b isoform 4
precursor [Homo sapiens].
Length = 309
Score = 308 bits (789), Expect = 5e-84
Identities = 167/299 (55%), Positives = 191/299 (63%), Gaps = 19/299 (6%)
Frame = +2
Query: 104 MGIPSFLALPAARSDWADCMPCHPLGHMLLWTALLFLAPVPGTHAVLPKAEVKLQPAWIN 283
MGI SFL + A SDWADC P GHMLLWTA+LFLAPV GT A PKA +KL+P WIN
Sbjct: 1 MGILSFLPVLATESDWADCKSPQPWGHMLLWTAVLFLAPVAGTPAP-PKAVLKLEPQWIN 59
Query: 284 VLQEDSVTLTCQGDHDPGNTTTQWFHNGNFTWTENQPSFSFKARRASSGYYRCQTAYSSL 463
VLQEDSVTLTC+G H P + + QWFHNGN T QPS+ FKA SG Y CQT +SL
Sbjct: 60 VLQEDSVTLTCRGTHSPESDSIQWFHNGNLIPTHTQPSYRFKANNNDSGEYTCQTGQTSL 119
Query: 464 SDPVHLDVISDWLLLQTSSLVFQEGEPILLRCHSWRNKPLHKVAFFQNGKSKKFSYVDSN 643
SDPVHL V+S+WL+LQT L FQEGE I+LRCHSW++KPL KV FFQNGKSKKFS D N
Sbjct: 120 SDPVHLTVLSEWLVLQTPHLEFQEGETIVLRCHSWKDKPLVKVTFFQNGKSKKFSRSDPN 179
Query: 644 FSIPQANQSHSGEYHCTGFIGKMSYSSQSVNITVQGSSLNNLLXXXXXXXXXXXXXXXXX 823
FSIPQAN SHSG+YHCTG IG YSS+ V ITVQ S + +
Sbjct: 180 FSIPQANHSHSGDYHCTGNIGYTLYSSKPVTITVQAPSSSPMGIIVAVVTGIAVAAIVAA 239
Query: 824 XXXXXWFRLRPKRIS-------------------ANHTDAEEAAKIXAERYITYSLLLH 943
+ R KRIS AN T+ +EA K+ AE ITYSLL+H
Sbjct: 240 VVALIY--CRKKRISALPGYPECREMGETLPEKPANPTNPDEADKVGAENTITYSLLMH 296
>ref|NP_963857.3| low affinity immunoglobulin gamma Fc region receptor II-c precursor
[Homo sapiens].
Length = 323
Score = 303 bits (777), Expect = 1e-82
Identities = 157/266 (59%), Positives = 179/266 (67%)
Frame = +2
Query: 104 MGIPSFLALPAARSDWADCMPCHPLGHMLLWTALLFLAPVPGTHAVLPKAEVKLQPAWIN 283
MGI SFL + A SDWADC P GHMLLWTA+LFLAPV GT A PKA +KL+P WIN
Sbjct: 1 MGILSFLPVLATESDWADCKSPQPWGHMLLWTAVLFLAPVAGTPAAPPKAVLKLEPQWIN 60
Query: 284 VLQEDSVTLTCQGDHDPGNTTTQWFHNGNFTWTENQPSFSFKARRASSGYYRCQTAYSSL 463
VLQEDSVTLTC+G H P + + WFHNGN T QPS+ FKA SG Y CQT +SL
Sbjct: 61 VLQEDSVTLTCRGTHSPESDSIPWFHNGNLIPTHTQPSYRFKANNNDSGEYTCQTGQTSL 120
Query: 464 SDPVHLDVISDWLLLQTSSLVFQEGEPILLRCHSWRNKPLHKVAFFQNGKSKKFSYVDSN 643
SDPVHL V+S+WL+LQT L FQEGE I+LRCHSW++KPL KV FFQNGKSKKFS D N
Sbjct: 121 SDPVHLTVLSEWLVLQTPHLEFQEGETIVLRCHSWKDKPLVKVTFFQNGKSKKFSRSDPN 180
Query: 644 FSIPQANQSHSGEYHCTGFIGKMSYSSQSVNITVQGSSLNNLLXXXXXXXXXXXXXXXXX 823
FSIPQAN SHSG+YHCTG IG YSS+ V ITVQ S + +
Sbjct: 181 FSIPQANHSHSGDYHCTGNIGYTLYSSKPVTITVQAPSSSPMGIIVAVVTGIAVAAIVAA 240
Query: 824 XXXXXWFRLRPKRISANHTDAEEAAK 901
+ R KRISAN TD +AA+
Sbjct: 241 VVALIY--CRKKRISANSTDPVKAAQ 264
>ref|NP_001177757.1| low affinity immunoglobulin gamma Fc region receptor II-b isoform 5
[Homo sapiens].
Length = 303
Score = 296 bits (759), Expect = 1e-80
Identities = 162/299 (54%), Positives = 186/299 (62%), Gaps = 19/299 (6%)
Frame = +2
Query: 104 MGIPSFLALPAARSDWADCMPCHPLGHMLLWTALLFLAPVPGTHAVLPKAEVKLQPAWIN 283
MGI SFL + A SDWADC P GHMLLWTA+LFLA P KA +KL+P WIN
Sbjct: 1 MGILSFLPVLATESDWADCKSPQPWGHMLLWTAVLFLAAPP-------KAVLKLEPQWIN 53
Query: 284 VLQEDSVTLTCQGDHDPGNTTTQWFHNGNFTWTENQPSFSFKARRASSGYYRCQTAYSSL 463
VLQEDSVTLTC+G H P + + QWFHNGN T QPS+ FKA SG Y CQT +SL
Sbjct: 54 VLQEDSVTLTCRGTHSPESDSIQWFHNGNLIPTHTQPSYRFKANNNDSGEYTCQTGQTSL 113
Query: 464 SDPVHLDVISDWLLLQTSSLVFQEGEPILLRCHSWRNKPLHKVAFFQNGKSKKFSYVDSN 643
SDPVHL V+S+WL+LQT L FQEGE I+LRCHSW++KPL KV FFQNGKSKKFS D N
Sbjct: 114 SDPVHLTVLSEWLVLQTPHLEFQEGETIVLRCHSWKDKPLVKVTFFQNGKSKKFSRSDPN 173
Query: 644 FSIPQANQSHSGEYHCTGFIGKMSYSSQSVNITVQGSSLNNLLXXXXXXXXXXXXXXXXX 823
FSIPQAN SHSG+YHCTG IG YSS+ V ITVQ S + +
Sbjct: 174 FSIPQANHSHSGDYHCTGNIGYTLYSSKPVTITVQAPSSSPMGIIVAVVTGIAVAAIVAA 233
Query: 824 XXXXXWFRLRPKRIS-------------------ANHTDAEEAAKIXAERYITYSLLLH 943
+ R KRIS AN T+ +EA K+ AE ITYSLL+H
Sbjct: 234 VVALIY--CRKKRISALPGYPECREMGETLPEKPANPTNPDEADKVGAENTITYSLLMH 290
>ref|NP_001129691.1| low affinity immunoglobulin gamma Fc region receptor II-a isoform 1
[Homo sapiens].
Length = 317
Score = 248 bits (632), Expect = 7e-66
Identities = 130/236 (55%), Positives = 153/236 (64%), Gaps = 1/236 (0%)
Frame = +2
Query: 197 TALLFLAPVPGTHAVLPKAEVKLQPAWINVLQEDSVTLTCQGDHDPGNTTTQWFHNGNFT 376
T LL LA A PKA +KL+P WINVLQEDSVTLTCQG P + + QWFHNGN
Sbjct: 23 TVLLLLASADSQAAAPPKAVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLI 82
Query: 377 WTENQPSFSFKARRASSGYYRCQTAYSSLSDPVHLDVISDWLLLQTSSLVFQEGEPILLR 556
T QPS+ FKA SG Y CQT +SLSDPVHL V+S+WL+LQT L FQEGE I+LR
Sbjct: 83 PTHTQPSYRFKANNNDSGEYTCQTGQTSLSDPVHLTVLSEWLVLQTPHLEFQEGETIMLR 142
Query: 557 CHSWRNKPLHKVAFFQNGKSKKFSYVDSNFSIPQANQSHSGEYHCTGFIGKMSYSSQSVN 736
CHSW++KPL KV FFQNGKS+KFS++D FSIPQAN SHSG+YHCTG IG +SS+ V
Sbjct: 143 CHSWKDKPLVKVTFFQNGKSQKFSHLDPTFSIPQANHSHSGDYHCTGNIGYTLFSSKPVT 202
Query: 737 ITVQGSSL-NNLLXXXXXXXXXXXXXXXXXXXXXXWFRLRPKRISANHTDAEEAAK 901
ITVQ S+ ++ R KRISAN TD +AA+
Sbjct: 203 ITVQVPSMGSSSPMGIIVAVVIATAVAAIVAAVVALIYCRKKRISANSTDPVKAAQ 258
>ref|NP_067674.2| low affinity immunoglobulin gamma Fc region receptor II-a isoform 2
[Homo sapiens].
Length = 316
Score = 244 bits (624), Expect = 6e-65
Identities = 130/236 (55%), Positives = 154/236 (65%), Gaps = 1/236 (0%)
Frame = +2
Query: 197 TALLFLAPVPGTHAVLPKAEVKLQPAWINVLQEDSVTLTCQGDHDPGNTTTQWFHNGNFT 376
T LL LA + A PKA +KL+P WINVLQEDSVTLTCQG P + + QWFHNGN
Sbjct: 23 TVLLLLASAD-SQAAPPKAVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLI 81
Query: 377 WTENQPSFSFKARRASSGYYRCQTAYSSLSDPVHLDVISDWLLLQTSSLVFQEGEPILLR 556
T QPS+ FKA SG Y CQT +SLSDPVHL V+S+WL+LQT L FQEGE I+LR
Sbjct: 82 PTHTQPSYRFKANNNDSGEYTCQTGQTSLSDPVHLTVLSEWLVLQTPHLEFQEGETIMLR 141
Query: 557 CHSWRNKPLHKVAFFQNGKSKKFSYVDSNFSIPQANQSHSGEYHCTGFIGKMSYSSQSVN 736
CHSW++KPL KV FFQNGKS+KFS++D FSIPQAN SHSG+YHCTG IG +SS+ V
Sbjct: 142 CHSWKDKPLVKVTFFQNGKSQKFSHLDPTFSIPQANHSHSGDYHCTGNIGYTLFSSKPVT 201
Query: 737 ITVQGSSL-NNLLXXXXXXXXXXXXXXXXXXXXXXWFRLRPKRISANHTDAEEAAK 901
ITVQ S+ ++ R KRISAN TD +AA+
Sbjct: 202 ITVQVPSMGSSSPMGIIVAVVIATAVAAIVAAVVALIYCRKKRISANSTDPVKAAQ 257
>ref|NP_000561.3| low affinity immunoglobulin gamma Fc region receptor III-B
precursor [Homo sapiens].
Length = 233
Score = 184 bits (468), Expect = 8e-47
Identities = 95/196 (48%), Positives = 126/196 (64%), Gaps = 1/196 (0%)
Frame = +2
Query: 185 MLLWTALLFLAPVPGTHAVLPKAEVKLQPAWINVLQEDSVTLTCQGDHDPGNTTTQWFHN 364
+LL TALL L LPKA V L+P W +VL++DSVTL CQG + P + +TQWFHN
Sbjct: 4 LLLPTALLLLVSAGMRTEDLPKAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHN 63
Query: 365 GNFTWTENQPSFSFKARRASSGYYRCQTAYSSLSDPVHLDVISDWLLLQTSSLVFQEGEP 544
N ++ F A SG YRCQT S+LSDPV L+V WLLLQ VF+E +P
Sbjct: 64 ENLISSQASSYFIDAATVNDSGEYRCQTNLSTLSDPVQLEVHIGWLLLQAPRWVFKEEDP 123
Query: 545 ILLRCHSWRNKPLHKVAFFQNGKSKKFSYVDSNFSIPQANQSHSGEYHCTGFIGKMSYSS 724
I LRCHSW+N LHKV + QNGK +K+ + +S+F IP+A SG Y C G +G + SS
Sbjct: 124 IHLRCHSWKNTALHKVTYLQNGKDRKYFHHNSDFHIPKATLKDSGSYFCRGLVGSKNVSS 183
Query: 725 QSVNITV-QGSSLNNL 769
++VNIT+ QG +++ +
Sbjct: 184 ETVNITITQGLAVSTI 199
>ref|NP_001121064.1| low affinity immunoglobulin gamma Fc region receptor III-A isoform
b precursor [Homo sapiens].
Length = 289
Score = 183 bits (465), Expect = 2e-46
Identities = 96/204 (47%), Positives = 128/204 (62%), Gaps = 1/204 (0%)
Frame = +2
Query: 161 MPCHPLGHMLLWTALLFLAPVPGTHAVLPKAEVKLQPAWINVLQEDSVTLTCQGDHDPGN 340
+ C + +LL TALL L G LPKA V L+P W VL++DSVTL CQG + P +
Sbjct: 32 LQCGIMWQLLLPTALLLLVSA-GMRTDLPKAVVFLEPQWYRVLEKDSVTLKCQGAYSPED 90
Query: 341 TTTQWFHNGNFTWTENQPSFSFKARRASSGYYRCQTAYSSLSDPVHLDVISDWLLLQTSS 520
+TQWFHN + ++ F A SG YRCQT S+LSDPV L+V WLLLQ
Sbjct: 91 NSTQWFHNESLISSQASSYFIDAATVDDSGEYRCQTNLSTLSDPVQLEVHIGWLLLQAPR 150
Query: 521 LVFQEGEPILLRCHSWRNKPLHKVAFFQNGKSKKFSYVDSNFSIPQANQSHSGEYHCTGF 700
VF+E +PI LRCHSW+N LHKV + QNGK +K+ + +S+F IP+A SG Y C G
Sbjct: 151 WVFKEEDPIHLRCHSWKNTALHKVTYLQNGKGRKYFHHNSDFYIPKATLKDSGSYFCRGL 210
Query: 701 IGKMSYSSQSVNITV-QGSSLNNL 769
G + SS++VNIT+ QG +++ +
Sbjct: 211 FGSKNVSSETVNITITQGLAVSTI 234
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 38,807,327
Number of extensions: 1133795
Number of successful extensions: 6499
Number of sequences better than 1.0e-05: 30
Number of HSP's gapped: 6241
Number of HSP's successfully gapped: 32
Length of query: 315
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 213
Effective length of database: 14,934,836
Effective search space: 3181120068
Effective search space used: 3181120068
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002767
(945 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_034317.1| low affinity immunoglobulin gamma Fc region rec... 262 2e-70
Alignment gi|NP_001070657.1| low affinity immunoglobulin gamma Fc region ... 244 5e-65
Alignment gi|NP_034318.2| low affinity immunoglobulin gamma Fc region rec... 213 2e-55
Alignment gi|NP_653142.2| Fc receptor, IgG, low affinity IV [Mus musculus]. 177 8e-45
Alignment gi|NP_034316.1| high affinity immunoglobulin gamma Fc receptor ... 170 1e-42
Alignment gi|NP_001025155.2| Fc receptor-like B [Mus musculus]. 117 1e-26
Alignment gi|NP_034314.2| high affinity immunoglobulin epsilon receptor s... 114 1e-25
Alignment gi|NP_899045.3| Fc receptor-like protein 5 isoform a [Mus muscu... 83 4e-16
Alignment gi|NP_001153687.1| Fc receptor-like A isoform 1 [Mus musculus]. 69 5e-12
Alignment gi|NP_660123.1| Fc receptor-like A isoform 2 [Mus musculus]. 69 5e-12
>ref|NP_034317.1| low affinity immunoglobulin gamma Fc region receptor II-b isoform 2
[Mus musculus].
Length = 293
Score = 262 bits (670), Expect = 2e-70
Identities = 145/281 (51%), Positives = 179/281 (63%), Gaps = 1/281 (0%)
Frame = +2
Query: 104 MGIPSFLALPAARSDWADCMPCHPLGHMLLWTALLFLAPVPGTHAVLPKAEVKLQPAWIN 283
MGI FL +P S+W + L HMLLWTA+L LA GTH LPKA VKL+P WI
Sbjct: 1 MGILPFLLIPM-ESNWTVHVFSRTLCHMLLWTAVLNLAA--GTHD-LPKAVVKLEPPWIQ 56
Query: 284 VLQEDSVTLTCQGDHDPGNTTTQWFHNGNFTWTENQPSFSFKARRASSGYYRCQTAYSSL 463
VL+ED+VTLTC+G H+PGN++TQWFHNG ++ Q S++FKA SG YRCQ + L
Sbjct: 57 VLKEDTVTLTCEGTHNPGNSSTQWFHNGRSIRSQVQASYTFKATVNDSGEYRCQMEQTRL 116
Query: 464 SDPVHLDVISDWLLLQTSSLVFQEGEPILLRCHSWRNKPLHKVAFFQNGKSKKFSYVDSN 643
SDPV L VISDWLLLQT LVF EGE I LRCHSWRNK L++++FF N KS ++ + SN
Sbjct: 117 SDPVDLGVISDWLLLQTPQLVFLEGETITLRCHSWRNKLLNRISFFHNEKSVRYHHYSSN 176
Query: 644 FSIPQANQSHSGEYHCTGFIGKMSYSSQSVNITVQG-SSLNNLLXXXXXXXXXXXXXXXX 820
FSIP+AN SHSG+Y+C G +G+ + S+ V ITVQG S +L
Sbjct: 177 FSIPKANHSHSGDYYCKGSLGRTLHQSKPVTITVQGPKSSRSLPVLTIVAAVTGIAVAAI 236
Query: 821 XXXXXXWFRLRPKRISANHTDAEEAAKIXAERYITYSLLLH 943
L+ K++ N D EEAAK AE ITYSLL H
Sbjct: 237 VIILVSLVYLKKKQVPDNPPDLEEAAKTEAENTITYSLLKH 277
>ref|NP_001070657.1| low affinity immunoglobulin gamma Fc region receptor II-b isoform 1
[Mus musculus].
Length = 340
Score = 244 bits (624), Expect = 5e-65
Identities = 125/216 (57%), Positives = 155/216 (71%)
Frame = +2
Query: 104 MGIPSFLALPAARSDWADCMPCHPLGHMLLWTALLFLAPVPGTHAVLPKAEVKLQPAWIN 283
MGI FL +P S+W + L HMLLWTA+L LA GTH LPKA VKL+P WI
Sbjct: 1 MGILPFLLIPM-ESNWTVHVFSRTLCHMLLWTAVLNLAA--GTHD-LPKAVVKLEPPWIQ 56
Query: 284 VLQEDSVTLTCQGDHDPGNTTTQWFHNGNFTWTENQPSFSFKARRASSGYYRCQTAYSSL 463
VL+ED+VTLTC+G H+PGN++TQWFHNG ++ Q S++FKA SG YRCQ + L
Sbjct: 57 VLKEDTVTLTCEGTHNPGNSSTQWFHNGRSIRSQVQASYTFKATVNDSGEYRCQMEQTRL 116
Query: 464 SDPVHLDVISDWLLLQTSSLVFQEGEPILLRCHSWRNKPLHKVAFFQNGKSKKFSYVDSN 643
SDPV L VISDWLLLQT LVF EGE I LRCHSWRNK L++++FF N KS ++ + SN
Sbjct: 117 SDPVDLGVISDWLLLQTPQLVFLEGETITLRCHSWRNKLLNRISFFHNEKSVRYHHYSSN 176
Query: 644 FSIPQANQSHSGEYHCTGFIGKMSYSSQSVNITVQG 751
FSIP+AN SHSG+Y+C G +G+ + S+ V ITVQG
Sbjct: 177 FSIPKANHSHSGDYYCKGSLGRTLHQSKPVTITVQG 212
>ref|NP_034318.2| low affinity immunoglobulin gamma Fc region receptor III [Mus
musculus].
Length = 267
Score = 213 bits (541), Expect = 2e-55
Identities = 104/184 (56%), Positives = 128/184 (69%)
Frame = +2
Query: 197 TALLFLAPVPGTHAVLPKAEVKLQPAWINVLQEDSVTLTCQGDHDPGNTTTQWFHNGNFT 376
T LL A A LPKA VKL P WI VL+ED VTL C+G H+PGN++TQWFHN +
Sbjct: 23 TILLLFAFADRQSAALPKAVVKLDPPWIQVLKEDMVTLMCEGTHNPGNSSTQWFHNWSSI 82
Query: 377 WTENQPSFSFKARRASSGYYRCQTAYSSLSDPVHLDVISDWLLLQTSSLVFQEGEPILLR 556
++ Q S++FKA SG YRCQ + LSDPV L VISDWLLLQT VF EGE I LR
Sbjct: 83 RSQVQSSYTFKATVNDSGEYRCQMEQTRLSDPVDLGVISDWLLLQTPQRVFLEGETITLR 142
Query: 557 CHSWRNKPLHKVAFFQNGKSKKFSYVDSNFSIPQANQSHSGEYHCTGFIGKMSYSSQSVN 736
CHSWRNK L++++FF N KS ++ + SNFSIP+AN SHSG+Y+C G +G + S+ V
Sbjct: 143 CHSWRNKLLNRISFFHNEKSVRYHHYKSNFSIPKANHSHSGDYYCKGSLGSTQHQSKPVT 202
Query: 737 ITVQ 748
ITVQ
Sbjct: 203 ITVQ 206
>ref|NP_653142.2| Fc receptor, IgG, low affinity IV [Mus musculus].
Length = 249
Score = 177 bits (450), Expect = 8e-45
Identities = 91/187 (48%), Positives = 119/187 (63%)
Frame = +2
Query: 185 MLLWTALLFLAPVPGTHAVLPKAEVKLQPAWINVLQEDSVTLTCQGDHDPGNTTTQWFHN 364
+LL TAL+ A G A L KA V L P W+ VL+EDSVTL CQG P + + +WFHN
Sbjct: 4 LLLPTALVLTA-FSGIQAGLQKAVVNLDPKWVRVLEEDSVTLRCQGTFSPEDNSIKWFHN 62
Query: 365 GNFTWTENQPSFSFKARRASSGYYRCQTAYSSLSDPVHLDVISDWLLLQTSSLVFQEGEP 544
+ ++ AR SG YRCQTA S++SDPV L+V WLLLQT+ +FQEG+P
Sbjct: 63 ESLIPHQDANYVIQSARVKDSGMYRCQTALSTISDPVQLEVHMGWLLLQTTKWLFQEGDP 122
Query: 545 ILLRCHSWRNKPLHKVAFFQNGKSKKFSYVDSNFSIPQANQSHSGEYHCTGFIGKMSYSS 724
I LRCHSW+N+P+ KV + QNGK KK+ + +S IP+A + SG Y C G IG + SS
Sbjct: 123 IHLRCHSWQNRPVRKVTYLQNGKGKKYFHENSELLIPKATHNDSGSYFCRGLIGHNNKSS 182
Query: 725 QSVNITV 745
S I++
Sbjct: 183 ASFRISL 189
>ref|NP_034316.1| high affinity immunoglobulin gamma Fc receptor I precursor [Mus
musculus].
Length = 404
Score = 170 bits (431), Expect = 1e-42
Identities = 91/189 (48%), Positives = 120/189 (63%), Gaps = 1/189 (0%)
Frame = +2
Query: 185 MLLWTALLFLAPVPGTHAVLPKAEVKLQPAWINVLQEDSVTLTCQGDHDPGNTTTQWFHN 364
M L T LL PV G KA + LQP W+++ Q+++VTL C+G H PG+++TQWF N
Sbjct: 10 MWLLTTLLLWVPVGGEVVNATKAVITLQPPWVSIFQKENVTLWCEGPHLPGDSSTQWFIN 69
Query: 365 GNFTWTENQPSFSF-KARRASSGYYRCQTAYSSLSDPVHLDVISDWLLLQTSSLVFQEGE 541
G PS+S +A SG YRCQ S SDPV L + +DWLLLQ S V EGE
Sbjct: 70 GTAVQIST-PSYSIPEASFQDSGEYRCQIGSSMPSDPVQLQIHNDWLLLQASRRVLTEGE 128
Query: 542 PILLRCHSWRNKPLHKVAFFQNGKSKKFSYVDSNFSIPQANQSHSGEYHCTGFIGKMSYS 721
P+ LRCH W+NK ++ V F++NGKS +FS DS +I + N SHSG YHC+G G+ Y+
Sbjct: 129 PLALRCHGWKNKLVYNVVFYRNGKSFQFS-SDSEVAILKTNLSHSGIYHCSG-TGRHRYT 186
Query: 722 SQSVNITVQ 748
S V+ITV+
Sbjct: 187 SAGVSITVK 195
>ref|NP_001025155.2| Fc receptor-like B [Mus musculus].
Length = 427
Score = 117 bits (293), Expect = 1e-26
Identities = 65/196 (33%), Positives = 104/196 (53%), Gaps = 8/196 (4%)
Frame = +2
Query: 185 MLLWTALLFLAPVPGTHAVLPKAEVKLQPAWINVLQEDSVTLTCQGDH----DPGNTTTQ 352
M + ALL L P G A L K + L P W + + + VTL C G H + +T
Sbjct: 1 MWMLAALLLLVPRSGKAATLEKPVLTLHPPWTTIFKGERVTLRCDGYHPLLLELRPISTL 60
Query: 353 WFHNGNFTWTENQPSFSFKARRASSGYYRCQTAYSSLSDPVHLDVISDWLLLQTSSLVFQ 532
W+ G+ ++ S +A G YRCQT + +SDP+HL V +DWL+LQ
Sbjct: 61 WYL-GHVLLPSHKKSIEVQA----PGVYRCQTRGAPVSDPIHLSVSNDWLILQVPYAAVF 115
Query: 533 EGEPILLRCHSWRNKPLHKVAFFQNGKSKKFSYVDSNFSIPQANQSHSGEYHCTGF---- 700
EGEP+++RC W +K ++K+ ++ +G++ ++ + +N+++ QA S SG Y C+G
Sbjct: 116 EGEPLVMRCRGWYDKVVYKLHYYHDGQAVRYFHSSTNYTVLQARASDSGHYQCSGTMRIP 175
Query: 701 IGKMSYSSQSVNITVQ 748
+ S V +TVQ
Sbjct: 176 VESAPMFSSKVAVTVQ 191
>ref|NP_034314.2| high affinity immunoglobulin epsilon receptor subunit alpha
precursor [Mus musculus].
Length = 250
Score = 114 bits (285), Expect = 1e-25
Identities = 66/186 (35%), Positives = 98/186 (52%), Gaps = 1/186 (0%)
Frame = +2
Query: 191 LWTALLFLAPVPGTHAVLPKAEVKLQPAWINVLQEDSVTLTCQGD-HDPGNTTTQWFHNG 367
L ALLF++ + K+ + L P WI + + VTL+C G+ H N+TT+W HNG
Sbjct: 9 LCLALLFMS-LDVILTATEKSVLTLDPPWIRIFTGEKVTLSCYGNNHLQMNSTTKWIHNG 67
Query: 368 NFTWTENQPSFSFKARRASSGYYRCQTAYSSLSDPVHLDVISDWLLLQTSSLVFQEGEPI 547
+ + A SG Y CQ S PV+L+V DWLLLQTS+ +
Sbjct: 68 TVSEVNSSHLVIVSATVQDSGKYICQKQGLFKSKPVYLNVTQDWLLLQTSADMVLVHGSF 127
Query: 548 LLRCHSWRNKPLHKVAFFQNGKSKKFSYVDSNFSIPQANQSHSGEYHCTGFIGKMSYSSQ 727
+RCH W+N + KV +++N + +SY +S SI +A + SG YHC G++ ++ Y S
Sbjct: 128 DIRCHGWKNWNVRKVIYYRNDHAFNYSY-ESPVSIREATLNDSGTYHCKGYLRQVKYESD 186
Query: 728 SVNITV 745
I V
Sbjct: 187 KFRIAV 192
>ref|NP_899045.3| Fc receptor-like protein 5 isoform a [Mus musculus].
Length = 596
Score = 82.8 bits (203), Expect = 4e-16
Identities = 58/193 (30%), Positives = 91/193 (47%), Gaps = 7/193 (3%)
Frame = +2
Query: 191 LWTALLFLAPVPGTHAVLPKAEVKLQPAWINVLQEDSVTLTCQGDHDPGNTTTQWFHNGN 370
+W LL + PV G H ++ V LQP W + + VTLTC T+W+
Sbjct: 14 MWLTLLVVTPVNGQHEAAQQSVVSLQPPWTTFFRGEVVTLTCYRFGFSVPQKTKWYQKRK 73
Query: 371 FTWTENQPSFSFKARRA---SSGYYRCQTAYSSLSDPVHLDVISDWLLLQTSSLVFQEGE 541
T + + KA SG Y CQ S V+++ D+L+LQ VF EG+
Sbjct: 74 -TVKQTPGALVIKAHTLKVHESGEYWCQADSLLPSMHVNVEFSEDFLVLQAPPAVF-EGD 131
Query: 542 PILLRCHSWRNKPLHKVAFFQNGKSKKFSYVDSNFSIPQANQSHSGEYHCTG----FIGK 709
++LRC++ + + F+++GK+ S F I +AN +G+Y CT G
Sbjct: 132 SVVLRCYAKKGIEAETLTFYKDGKALTLHPQSSEFYIHRANLKDNGQYKCTSKKKWSFGS 191
Query: 710 MSYSSQSVNITVQ 748
+ Y+S +V + VQ
Sbjct: 192 L-YTSNTVVVQVQ 203
>ref|NP_001153687.1| Fc receptor-like A isoform 1 [Mus musculus].
Length = 353
Score = 68.9 bits (167), Expect = 5e-12
Identities = 46/148 (31%), Positives = 67/148 (45%), Gaps = 4/148 (2%)
Frame = +2
Query: 317 QGDHDPGNTTTQWFHNGNFTWTENQPSFSFKARRASSGYYRCQTAYSSLSDPVHLDVISD 496
+GD D G+ T ++ F FK GY + S P HL V D
Sbjct: 55 EGDEDDGDMTQS-----------SEAGFQFK------GY--------TFSKPFHLSVSYD 89
Query: 497 WLLLQTSSLVFQEGEPILLRCHSWRNKPLHKVAFFQNGKSKKFSYVDSNFSIPQANQSHS 676
WL+LQ + + EG+ ++L C +W++ PL +V F++ G + S FSI +S
Sbjct: 90 WLILQGPATLIFEGDTLVLHCRAWQDWPLTQVIFYREGSALGPPGPKSEFSITMVQKSDG 149
Query: 677 GEYHCTGFIGKMSYSSQS----VNITVQ 748
G YHC+G S+ V ITVQ
Sbjct: 150 GHYHCSGIFRSPGPGSREAASPVAITVQ 177
>ref|NP_660123.1| Fc receptor-like A isoform 2 [Mus musculus].
Length = 352
Score = 68.9 bits (167), Expect = 5e-12
Identities = 46/148 (31%), Positives = 67/148 (45%), Gaps = 4/148 (2%)
Frame = +2
Query: 317 QGDHDPGNTTTQWFHNGNFTWTENQPSFSFKARRASSGYYRCQTAYSSLSDPVHLDVISD 496
+GD D G+ T ++ F FK GY + S P HL V D
Sbjct: 54 EGDEDDGDMTQS-----------SEAGFQFK------GY--------TFSKPFHLSVSYD 88
Query: 497 WLLLQTSSLVFQEGEPILLRCHSWRNKPLHKVAFFQNGKSKKFSYVDSNFSIPQANQSHS 676
WL+LQ + + EG+ ++L C +W++ PL +V F++ G + S FSI +S
Sbjct: 89 WLILQGPATLIFEGDTLVLHCRAWQDWPLTQVIFYREGSALGPPGPKSEFSITMVQKSDG 148
Query: 677 GEYHCTGFIGKMSYSSQS----VNITVQ 748
G YHC+G S+ V ITVQ
Sbjct: 149 GHYHCSGIFRSPGPGSREAASPVAITVQ 176
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 32,811,235
Number of extensions: 942122
Number of successful extensions: 5064
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 4900
Number of HSP's successfully gapped: 13
Length of query: 315
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 214
Effective length of database: 12,583,923
Effective search space: 2692959522
Effective search space used: 2692959522
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002767
(945 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001028185.1| low affinity immunoglobulin gamma Fc region ... 518 e-147
Alignment gi|NP_001028183.1| high affinity immunoglobulin gamma Fc recept... 173 1e-43
Alignment gi|XP_003125725.1| PREDICTED: high affinity immunoglobulin epsi... 163 1e-40
Alignment gi|NP_999556.1| low affinity immunoglobulin gamma Fc region rec... 159 2e-39
Alignment gi|XP_001929174.1| PREDICTED: high affinity immunoglobulin epsi... 152 2e-37
Alignment gi|XP_003361390.1| PREDICTED: Fc receptor-like B-like [Sus scro... 117 9e-27
Alignment gi|XP_001925993.1| PREDICTED: Fc receptor-like B [Sus scrofa]. 117 9e-27
Alignment gi|XP_003125740.2| PREDICTED: Fc receptor-like protein 3 [Sus s... 112 3e-25
Alignment gi|XP_003125741.1| PREDICTED: LOW QUALITY PROTEIN: Fc receptor-... 93 2e-19
Alignment gi|XP_001927593.3| PREDICTED: Fc receptor-like protein 4-like [... 83 2e-16
>ref|NP_001028185.1| low affinity immunoglobulin gamma Fc region receptor II-b [Sus
scrofa].
Length = 297
Score = 518 bits (1334), Expect = e-147
Identities = 252/280 (90%), Positives = 253/280 (90%)
Frame = +2
Query: 104 MGIPSFLALPAARSDWADCMPCHPLGHMLLWTALLFLAPVPGTHAVLPKAEVKLQPAWIN 283
MGIPSFLALPA RSDWADCMPCHPLGHMLLWTALLFLAPVPGTHAVLPKAEVKLQPAWIN
Sbjct: 1 MGIPSFLALPATRSDWADCMPCHPLGHMLLWTALLFLAPVPGTHAVLPKAEVKLQPAWIN 60
Query: 284 VLQEDSVTLTCQGDHDPGNTTTQWFHNGNFTWTENQPSFSFKARRASSGYYRCQTAYSSL 463
VLQEDSVTLTCQGDHDPGNTTTQWFHNGNFTWTENQPSFSFKARRASSG+YRCQTAYSSL
Sbjct: 61 VLQEDSVTLTCQGDHDPGNTTTQWFHNGNFTWTENQPSFSFKARRASSGHYRCQTAYSSL 120
Query: 464 SDPVHLDVISDWLLLQTSSLVFQEGEPILLRCHSWRNKPLHKVAFFQNGKSKKFSYVDSN 643
SDPVHLDVISDWLLLQTSSLVFQEGEPILLRCHSWRNKPLHKVAFFQNGKSKKFSYVDSN
Sbjct: 121 SDPVHLDVISDWLLLQTSSLVFQEGEPILLRCHSWRNKPLHKVAFFQNGKSKKFSYVDSN 180
Query: 644 FSIPQANQSHSGEYHCTGFIGKMSYSSQSVNITVQGSSLNNLLXXXXXXXXXXXXXXXXX 823
FSIPQANQSHSGEYHCTGFIGKMSYSSQSVNITVQGSSLNNLL
Sbjct: 181 FSIPQANQSHSGEYHCTGFIGKMSYSSQSVNITVQGSSLNNLLVTIVVAVVAWIVAMAIA 240
Query: 824 XXXXXWFRLRPKRISANHTDAEEAAKIXAERYITYSLLLH 943
WFRLR KRISANHTDAEEAAKI AE ITYSLLLH
Sbjct: 241 AAIAAWFRLRRKRISANHTDAEEAAKIEAEDTITYSLLLH 280
>ref|NP_001028183.1| high affinity immunoglobulin gamma Fc receptor I [Sus scrofa].
Length = 346
Score = 173 bits (439), Expect = 1e-43
Identities = 90/187 (48%), Positives = 119/187 (63%), Gaps = 1/187 (0%)
Frame = +2
Query: 191 LWTALLFLAPVP-GTHAVLPKAEVKLQPAWINVLQEDSVTLTCQGDHDPGNTTTQWFHNG 367
+W ++ L VP G KA + LQP W++V QE++VTL C+G H PG+++TQWF NG
Sbjct: 1 MWLLIILLLCVPTGGQMDQAKAVITLQPPWVSVFQEENVTLQCEGPHLPGDSSTQWFLNG 60
Query: 368 NFTWTENQPSFSFKARRASSGYYRCQTAYSSLSDPVHLDVISDWLLLQTSSLVFQEGEPI 547
T A SG YRCQT S SDPV L+V DWLLLQ SS VF EGEP+
Sbjct: 61 TAIETLTPRYRIAAAGINDSGEYRCQTGLSVPSDPVQLEVHKDWLLLQVSSRVFTEGEPL 120
Query: 548 LLRCHSWRNKPLHKVAFFQNGKSKKFSYVDSNFSIPQANQSHSGEYHCTGFIGKMSYSSQ 727
LRCH WRNK ++ + F+QNGK+ KFS +S F+I + N SH+G YHC+G + Y+S
Sbjct: 121 ALRCHGWRNKLMYNILFYQNGKTFKFSPRNSEFTILKTNLSHNGIYHCSG-MRVHRYTSA 179
Query: 728 SVNITVQ 748
V+IT++
Sbjct: 180 GVSITIK 186
>ref|XP_003125725.1| PREDICTED: high affinity immunoglobulin epsilon receptor subunit
alpha-like [Sus scrofa].
Length = 261
Score = 163 bits (413), Expect = 1e-40
Identities = 85/191 (44%), Positives = 121/191 (63%), Gaps = 1/191 (0%)
Frame = +2
Query: 188 LLWTALLFLAPVPGTHAVLPKAEVKLQPAWINVLQEDSVTLTCQGDHDPGNTTTQWFHNG 367
LLW ALL +P G AV+ +++V L P W + + ++VTLTC G++ N T W HN
Sbjct: 10 LLWIALLLFSP-DGMAAVIQESQVSLNPPWNRIFRGENVTLTCIGNYSLENYPTNWTHN- 67
Query: 368 NFTWTENQPSFSFK-ARRASSGYYRCQTAYSSLSDPVHLDVISDWLLLQTSSLVFQEGEP 544
N T S+ K A+ SG YRCQ+ ++S+PVHL+VISDWLLLQTS V +EG+
Sbjct: 68 NKTLEVKTSSWDLKNAKPGDSGKYRCQSKDFTMSEPVHLEVISDWLLLQTSVPVVREGQS 127
Query: 545 ILLRCHSWRNKPLHKVAFFQNGKSKKFSYVDSNFSIPQANQSHSGEYHCTGFIGKMSYSS 724
LLRCH W+N ++KV ++++GK+ K+ Y + N SI A + SG Y CTG I K+ +S
Sbjct: 128 FLLRCHGWKNLNVYKVIYYKDGKALKYWYENHNLSITNAKREDSGSYWCTGIIQKIPKNS 187
Query: 725 QSVNITVQGSS 757
++ IT+Q S
Sbjct: 188 TTLTITIQTDS 198
>ref|NP_999556.1| low affinity immunoglobulin gamma Fc region receptor III [Sus
scrofa].
Length = 256
Score = 159 bits (403), Expect = 2e-39
Identities = 85/187 (45%), Positives = 110/187 (58%), Gaps = 1/187 (0%)
Frame = +2
Query: 197 TALLFLAPVPGTHAV-LPKAEVKLQPAWINVLQEDSVTLTCQGDHDPGNTTTQWFHNGNF 373
TALL L GTHA PK+ V L P W +L++DSVTL CQG + PG+ +T+W NG
Sbjct: 8 TALLLLVSA-GTHAEDPPKSVVILDPPWDRLLEKDSVTLKCQGAYPPGDDSTEWRWNGTL 66
Query: 374 TWTENQPSFSFKARRASSGYYRCQTAYSSLSDPVHLDVISDWLLLQTSSLVFQEGEPILL 553
+ A +SG Y C+T S+ SDP+ L+V WLLLQ V QEGE I L
Sbjct: 67 ISNKASSYSITDATVGNSGEYTCKTGLSAQSDPLRLEVYKGWLLLQAPRWVVQEGESIRL 126
Query: 554 RCHSWRNKPLHKVAFFQNGKSKKFSYVDSNFSIPQANQSHSGEYHCTGFIGKMSYSSQSV 733
RCH+W+N + KV +FQNG KKFS+ + + IP A G Y C G I + SS++V
Sbjct: 127 RCHTWKNITIQKVQYFQNGMGKKFSHQNFEYHIPNATLKDGGSYFCRGIIKNYNLSSEAV 186
Query: 734 NITVQGS 754
+TVQGS
Sbjct: 187 KVTVQGS 193
>ref|XP_001929174.1| PREDICTED: high affinity immunoglobulin epsilon receptor subunit
alpha-like [Sus scrofa].
Length = 239
Score = 152 bits (385), Expect = 2e-37
Identities = 77/175 (44%), Positives = 112/175 (64%), Gaps = 1/175 (0%)
Frame = +2
Query: 236 AVLPKAEVKLQPAWINVLQEDSVTLTCQGDHDPGNTTTQWFHNGNFTWTENQPSFSFK-A 412
AV+ +++V L P W + + ++VTLTC G++ N T W HN N T S+ K A
Sbjct: 3 AVIQESQVSLNPPWNRIFRGENVTLTCIGNYSLENYPTNWTHN-NKTLEVKTSSWDLKNA 61
Query: 413 RRASSGYYRCQTAYSSLSDPVHLDVISDWLLLQTSSLVFQEGEPILLRCHSWRNKPLHKV 592
+ SG YRCQ+ ++S+PVHL+VISDWLLLQTS V +EG+ LLRCH W+N ++KV
Sbjct: 62 KPGDSGKYRCQSKDFTMSEPVHLEVISDWLLLQTSVPVVREGQSFLLRCHGWKNLNVYKV 121
Query: 593 AFFQNGKSKKFSYVDSNFSIPQANQSHSGEYHCTGFIGKMSYSSQSVNITVQGSS 757
++++GK+ K+ Y + N SI A + SG Y CTG I K+ +S ++ IT+Q S
Sbjct: 122 IYYKDGKALKYWYENHNLSITNAKREDSGSYWCTGIIQKIPKNSTTLTITIQTDS 176
>ref|XP_003361390.1| PREDICTED: Fc receptor-like B-like [Sus scrofa].
Length = 415
Score = 117 bits (293), Expect = 9e-27
Identities = 65/196 (33%), Positives = 105/196 (53%), Gaps = 10/196 (5%)
Frame = +2
Query: 191 LWTALLFLAPVP--GTHAVLPKAEVKLQPAWINVLQEDSVTLTCQGDH----DPGNTTTQ 352
+W+ FL VP G A L K + L P W + + + VTL C G H + +T
Sbjct: 1 MWSLAAFLLLVPSIGQAATLEKPILSLHPPWTTIFKGERVTLRCDGYHPLLLELRPISTL 60
Query: 353 WFHNGNFTWTENQPSFSFKARRASSGYYRCQTAYSSLSDPVHLDVISDWLLLQTSSLVFQ 532
W+ G+ ++ S + + G YRCQT + +SDP+HL V +DWL+LQ V
Sbjct: 61 WYL-GHLLLPSHKKSIEVQ----TPGIYRCQTRGAPVSDPIHLSVSNDWLILQVPYAVVF 115
Query: 533 EGEPILLRCHSWRNKPLHKVAFFQNGKSKKFSYVDSNFSIPQANQSHSGEYHCTGF---- 700
EGEP+++RC W +K ++K+ ++Q+ + ++ + +N+++PQA S SG Y C+G
Sbjct: 116 EGEPLVMRCRGWYDKVVYKLHYYQDDQPVRYFHSSANYTVPQARASDSGRYQCSGTMRIP 175
Query: 701 IGKMSYSSQSVNITVQ 748
+ S V +TVQ
Sbjct: 176 VESAPMFSAKVAVTVQ 191
>ref|XP_001925993.1| PREDICTED: Fc receptor-like B [Sus scrofa].
Length = 425
Score = 117 bits (293), Expect = 9e-27
Identities = 65/196 (33%), Positives = 105/196 (53%), Gaps = 10/196 (5%)
Frame = +2
Query: 191 LWTALLFLAPVP--GTHAVLPKAEVKLQPAWINVLQEDSVTLTCQGDH----DPGNTTTQ 352
+W+ FL VP G A L K + L P W + + + VTL C G H + +T
Sbjct: 1 MWSLAAFLLLVPSIGQAATLEKPILSLHPPWTTIFKGERVTLRCDGYHPLLLELRPISTL 60
Query: 353 WFHNGNFTWTENQPSFSFKARRASSGYYRCQTAYSSLSDPVHLDVISDWLLLQTSSLVFQ 532
W+ G+ ++ S + + G YRCQT + +SDP+HL V +DWL+LQ V
Sbjct: 61 WYL-GHLLLPSHKKSIEVQ----TPGIYRCQTRGAPVSDPIHLSVSNDWLILQVPYAVVF 115
Query: 533 EGEPILLRCHSWRNKPLHKVAFFQNGKSKKFSYVDSNFSIPQANQSHSGEYHCTGF---- 700
EGEP+++RC W +K ++K+ ++Q+ + ++ + +N+++PQA S SG Y C+G
Sbjct: 116 EGEPLVMRCRGWYDKVVYKLHYYQDDQPVRYFHSSANYTVPQARASDSGRYQCSGTMRIP 175
Query: 701 IGKMSYSSQSVNITVQ 748
+ S V +TVQ
Sbjct: 176 VESAPMFSAKVAVTVQ 191
>ref|XP_003125740.2| PREDICTED: Fc receptor-like protein 3 [Sus scrofa].
Length = 695
Score = 112 bits (280), Expect = 3e-25
Identities = 67/192 (34%), Positives = 102/192 (53%), Gaps = 4/192 (2%)
Frame = +2
Query: 185 MLLWTALLFLAPVPGTHAVLPKAEVKLQPAWINVLQEDSVTLTCQGDHDPGNTTTQWFHN 364
MLLW LL LAP V+PKA + L P W + D VTLTC+ + P W++N
Sbjct: 1 MLLWLLLLILAPGRDQSGVIPKAFLLLNPPWSTNFKGDKVTLTCKDSYSPSQGHISWYYN 60
Query: 365 GNFTWTENQPSFSFKARRASSGYYRCQTAYSSLSDPVHLDVISDWLLLQTSSLVFQEGEP 544
+N + +G Y C+T SS SDPVH+D +SDWL+LQ +F EG+
Sbjct: 61 EKLL-DKNSEAIQID----QTGDYSCKTQRSSFSDPVHVDFLSDWLILQAPYPIF-EGDD 114
Query: 545 ILLRCHSWRNKPLHKVAFFQNGKSKKFSYVDSNFSIPQANQSHSGEYHCT----GFIGKM 712
++LRC R + + F++N + +Y +S+F++ ++ H G+YHC+ F G
Sbjct: 115 VILRCPR-REESTSETVFYKNERKISSNY-ESSFTLTSVSRDH-GKYHCSASKKSFWGTK 171
Query: 713 SYSSQSVNITVQ 748
+S+ + I VQ
Sbjct: 172 KENSKPLMIQVQ 183
>ref|XP_003125741.1| PREDICTED: LOW QUALITY PROTEIN: Fc receptor-like protein 5-like
[Sus scrofa].
Length = 925
Score = 93.2 bits (230), Expect = 2e-19
Identities = 67/192 (34%), Positives = 89/192 (46%), Gaps = 4/192 (2%)
Frame = +2
Query: 185 MLLWTALLFLAPVPGTHAVLPKAEVKLQPAWINVLQEDSVTLTCQ--GDHDPGNTTT-QW 355
MLLW +LL LAPV G A PK + L P W Q ++V LTC H P +W
Sbjct: 1 MLLWVSLLVLAPVSGQFATEPKPVISLHPLWTTFFQGETVMLTCNTFRFHAPEKIKLYRW 60
Query: 356 FHNGNFTWTENQPSFSFKARRASSGYYRCQTAYSSLSDPVHLDVISDWLLLQTSSLVFQE 535
+ G + +G Y+CQ S SD VHL S L+LQ VF E
Sbjct: 61 YLEGEI----QSETLGNTHEVRETGMYKCQAQDSPPSDAVHLLFSSANLILQAPPYVF-E 115
Query: 536 GEPILLRCHSWRNKPLHKVAFFQNGKSKKFSYVDSNFSIPQANQSHSGEYHCTGF-IGKM 712
E ++LRC + N L+ + +++G+ S F I QA +GEY CTG
Sbjct: 116 KESVVLRCQAKANTELNGMTLYKHGEVLGVPKKTSEFRIYQAGLKDNGEYRCTGLKKDNE 175
Query: 713 SYSSQSVNITVQ 748
+ SS +V I VQ
Sbjct: 176 TISSNAVKIEVQ 187
Score = 53.1 bits (126), Expect = 2e-07
Identities = 49/172 (28%), Positives = 78/172 (45%), Gaps = 19/172 (11%)
Frame = +2
Query: 290 QEDSVTLTCQGDHDPGNTTTQWFHNGNFTWTENQPSFS-------FKARRASSGYYRC-- 442
+E ++TLTC+ Q +T QP + F +R SG YRC
Sbjct: 204 EEGTLTLTCETQLSSQRPDVQLQFRFFRDYTSPQPYWRSSPELQIFTIQREDSGSYRCEA 263
Query: 443 QTAYSSL---SDPVHLDV---ISDWLLLQTSSLVFQEGEPILLRCHSWRNKPLHKVAFFQ 604
QT L S + ++V ++D L LVF+ E +L+ S P+ V+FF+
Sbjct: 264 QTVTPHLQKQSQQLQINVQRIVADVRLYSRPELVFEGKELVLICSVSGVPAPI-TVSFFK 322
Query: 605 ----NGKSKKFSYVDSNFSIPQANQSHSGEYHCTGFIGKMSYSSQSVNITVQ 748
N +K + ++ F IP SH+GEY+C S+ SQ++ I+V+
Sbjct: 323 KRPWNKDTKIVTSSETEFKIPAVESSHAGEYYCAAGKNHRSFPSQTLTISVR 374
>ref|XP_001927593.3| PREDICTED: Fc receptor-like protein 4-like [Sus scrofa].
Length = 578
Score = 83.2 bits (204), Expect = 2e-16
Identities = 51/160 (31%), Positives = 75/160 (46%), Gaps = 1/160 (0%)
Frame = +2
Query: 221 VPGTHAVLPKAEVKLQPAWINVLQEDSVTLTCQGDHDPGNTTTQWFH-NGNFTWTENQPS 397
+ G A +P++ + LQP W Q + + LTC G +W+ N + P
Sbjct: 67 IMGITAAIPRSVISLQPPWTTAFQGERINLTCNGFQGSAPAKVKWYRKNFRKRYPRETPG 126
Query: 398 FSFKARRASSGYYRCQTAYSSLSDPVHLDVISDWLLLQTSSLVFQEGEPILLRCHSWRNK 577
+ + R SG Y+CQ S LS+PV+L +LQ VF EG+ ++LRC +
Sbjct: 127 NTLEVR--DSGEYKCQVPGSLLSNPVYLLFTPASFILQAPHSVF-EGDELVLRCQKRGKE 183
Query: 578 PLHKVAFFQNGKSKKFSYVDSNFSIPQANQSHSGEYHCTG 697
L V + NGK S IPQA+ ++SG Y C G
Sbjct: 184 RLTSVKYTWNGKIISNSNKGVELLIPQASLNNSGSYQCIG 223
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 24,423,749
Number of extensions: 720985
Number of successful extensions: 4208
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 4033
Number of HSP's successfully gapped: 15
Length of query: 315
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 216
Effective length of database: 8,879,129
Effective search space: 1917891864
Effective search space used: 1917891864
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002767
(945 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr04 513 e-143
>Sscrofa_Chr04
|| Length = 143465943
Score = 513 bits (259), Expect = e-143
Identities = 259/259 (100%)
Strand = Plus / Minus
Query: 236 gcagttctcccaaaggctgaggtgaagcttcagcctgcatggatcaatgtgctccaggag 295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96901346 gcagttctcccaaaggctgaggtgaagcttcagcctgcatggatcaatgtgctccaggag 96901287
Query: 296 gattctgtgacactgacgtgccagggcgaccatgaccctgggaacaccaccacccagtgg 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96901286 gattctgtgacactgacgtgccagggcgaccatgaccctgggaacaccaccacccagtgg 96901227
Query: 356 ttccataatgggaacttcacctggaccgagaaccagcccagcttcagctttaaggccagg 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96901226 ttccataatgggaacttcacctggaccgagaaccagcccagcttcagctttaaggccagg 96901167
Query: 416 agagctagcagcggatactacaggtgccagactgcctactccagtctcagcgaccctgtg 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96901166 agagctagcagcggatactacaggtgccagactgcctactccagtctcagcgaccctgtg 96901107
Query: 476 catctggatgtgatttctg 494
|||||||||||||||||||
Sbjct: 96901106 catctggatgtgatttctg 96901088
Score = 511 bits (258), Expect = e-142
Identities = 261/262 (99%)
Strand = Plus / Minus
Query: 489 tttctgactggctgctgctccaaacctctagtctggttttccaggaaggggagcccatct 548
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96895502 tttcagactggctgctgctccaaacctctagtctggttttccaggaaggggagcccatct 96895443
Query: 549 tgctgaggtgccatagctggagaaacaagcctctgcataaggttgcatttttccagaatg 608
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96895442 tgctgaggtgccatagctggagaaacaagcctctgcataaggttgcatttttccagaatg 96895383
Query: 609 gaaaatctaagaagttttcctatgtggattccaacttctccatcccacaagcaaaccaga 668
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96895382 gaaaatctaagaagttttcctatgtggattccaacttctccatcccacaagcaaaccaga 96895323
Query: 669 gtcatagtggcgagtaccactgcacaggatttatcgggaagatgtcgtactcatcacagt 728
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96895322 gtcatagtggcgagtaccactgcacaggatttatcgggaagatgtcgtactcatcacagt 96895263
Query: 729 ctgtgaacatcactgtccaagg 750
||||||||||||||||||||||
Sbjct: 96895262 ctgtgaacatcactgtccaagg 96895241
Score = 426 bits (215), Expect = e-117
Identities = 215/215 (100%)
Strand = Plus / Minus
Query: 1 tctccagaatttgtctgtcctctggggtggaatctgtcgagccttgagagaagcctgtct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96908203 tctccagaatttgtctgtcctctggggtggaatctgtcgagccttgagagaagcctgtct 96908144
Query: 61 tgcgctggcgctgccagaggcaacctgcgtactccaggaggtgatggggatcccctcgtt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96908143 tgcgctggcgctgccagaggcaacctgcgtactccaggaggtgatggggatcccctcgtt 96908084
Query: 121 cctagccctccccgctgccaggagtgactgggctgattgcatgccctgccatcctttggg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96908083 cctagccctccccgctgccaggagtgactgggctgattgcatgccctgccatcctttggg 96908024
Query: 181 ccacatgctcctgtggacagctctgctattcctgg 215
|||||||||||||||||||||||||||||||||||
Sbjct: 96908023 ccacatgctcctgtggacagctctgctattcctgg 96907989
Score = 226 bits (114), Expect = 2e-56
Identities = 120/122 (98%)
Strand = Plus / Minus
Query: 748 agggtccagcttgaacaacttgctggtgacgatagttgtggctgtggttgcttggattgt 807
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96894562 agggtccagcttgaacaacttgctggtgacgatagttgtggctgtggttgcttggattgt 96894503
Query: 808 tgccatggctattgctgctgccatagcagcctggttccgcctcaggccaaagcggatttc 867
||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 96894502 tgcaatggctattgctgctgccatagcagcctggttccgcctcaggcgaaagcggatttc 96894443
Query: 868 ag 869
||
Sbjct: 96894442 ag 96894441
Score = 79.8 bits (40), Expect = 2e-12
Identities = 40/40 (100%)
Strand = Plus / Minus
Query: 867 cagccaatcacactgatgctgaagaggctgccaaaattga 906
||||||||||||||||||||||||||||||||||||||||
Sbjct: 96889754 cagccaatcacactgatgctgaagaggctgccaaaattga 96889715
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 28,342,216
Number of extensions: 164
Number of successful extensions: 164
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 164
Number of HSP's successfully gapped: 5
Length of query: 945
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 924
Effective length of database: 2,808,413,156
Effective search space: 2594973756144
Effective search space used: 2594973756144
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)