Animal-Genome cDNA 20110601C-002767


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002767
         (945 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_776964.1| low affinity immunoglobulin gamma Fc region rec...   336   2e-92
Alignment   gi|NP_001103276.1| Fc fragment of IgG, low affinity IIc, recept...   311   7e-85
Alignment   gi|NP_776963.1| high affinity immunoglobulin gamma Fc receptor ...   175   5e-44
Alignment   gi|NP_001070870.1| low affinity immunoglobulin gamma Fc region ...   166   2e-41
Alignment   gi|NP_001093780.1| high affinity immunoglobulin epsilon recepto...   155   5e-38
Alignment   gi|NP_001179494.1| Fc receptor-like B [Bos taurus].                  117   1e-26
Alignment   gi|XP_002685894.1| PREDICTED: Fc receptor-like B-like [Bos taur...   117   1e-26
Alignment   gi|XP_002686001.1| PREDICTED: Fc receptor-like 3 [Bos taurus].        89   4e-18
Alignment   gi|XP_593037.5| PREDICTED: Fc receptor-like 3 [Bos taurus].           89   4e-18
Alignment   gi|XP_002686003.1| PREDICTED: Fc receptor-like 4-like [Bos taur...    79   6e-15

>ref|NP_776964.1| low affinity immunoglobulin gamma Fc region receptor II-b precursor
           [Bos taurus].
          Length = 296

 Score =  336 bits (862), Expect = 2e-92
 Identities = 176/281 (62%), Positives = 198/281 (70%), Gaps = 1/281 (0%)
 Frame = +2

Query: 104 MGIPSFLALPAARSDWADCMPCHPLGHMLLWTALLFLAPVPGTHAVLPKAEVKLQPAWIN 283
           MGIPSFLA PAAR + A C P HP GHMLLWTALLFLAPV G    LPKA V +QPAWIN
Sbjct: 1   MGIPSFLAFPAARRNRAHCTPWHPWGHMLLWTALLFLAPVSGKPD-LPKAVVTIQPAWIN 59

Query: 284 VLQEDSVTLTCQGDHDPGNTTTQWFHNGNFTWTENQPSFSFKARRASSGYYRCQTAYSSL 463
           VL+ED VTLTCQG        T WFHNG+   T+ QPS+SF+A    SG YRCQ   +SL
Sbjct: 60  VLREDHVTLTCQGTSFSAGNLTTWFHNGSSIHTQKQPSYSFRAGSNDSGSYRCQREQTSL 119

Query: 464 SDPVHLDVISDWLLLQTSSLVFQEGEPILLRCHSWRNKPLHKVAFFQNGKSKKFSYVDSN 643
           SDPVHLDVISDWLLLQT SLVFQEGEPI+LRCHSWRN+PL+K+ F+Q+ KSK FSY  +N
Sbjct: 120 SDPVHLDVISDWLLLQTPSLVFQEGEPIMLRCHSWRNQPLNKITFYQDRKSKIFSYQRTN 179

Query: 644 FSIPQANQSHSGEYHCTGFIGKMSYSSQSVNITVQGSSLNNLLXXXXXXXXXXXXXXXXX 823
           FSIP+AN SHSG+YHCT FIGKM +SSQ VNITVQ SS +                    
Sbjct: 180 FSIPRANLSHSGQYHCTAFIGKMLHSSQPVNITVQESSSSGPSSMTAVAIGTCFAAVAIV 239

Query: 824 XXXXXWFRLRPKRISANHTDAE-EAAKIXAERYITYSLLLH 943
                WFRLR K ISA  TDAE +AA+  AE  +TYSLL H
Sbjct: 240 AAIITWFRLRRKPISAGLTDAENDAARTEAENTVTYSLLSH 280


>ref|NP_001103276.1| Fc fragment of IgG, low affinity IIc, receptor for (CD32) [Bos
           taurus].
          Length = 278

 Score =  311 bits (796), Expect = 7e-85
 Identities = 150/215 (69%), Positives = 168/215 (78%)
 Frame = +2

Query: 104 MGIPSFLALPAARSDWADCMPCHPLGHMLLWTALLFLAPVPGTHAVLPKAEVKLQPAWIN 283
           MGIPSFLA PAAR + A C P HP GHMLLWTAL FLAPVPG  A LPKA V +QPAWIN
Sbjct: 1   MGIPSFLAFPAARRNRAHCTPWHPWGHMLLWTALPFLAPVPGKCADLPKAVVSIQPAWIN 60

Query: 284 VLQEDSVTLTCQGDHDPGNTTTQWFHNGNFTWTENQPSFSFKARRASSGYYRCQTAYSSL 463
           VL+ED VTL CQG        T WFHNG+   T+ QPS+SF+A     G YRCQ   +SL
Sbjct: 61  VLREDHVTLMCQGTSFSAGNLTTWFHNGSSIHTQKQPSYSFRAGSNDGGSYRCQREQTSL 120

Query: 464 SDPVHLDVISDWLLLQTSSLVFQEGEPILLRCHSWRNKPLHKVAFFQNGKSKKFSYVDSN 643
           SDPVHLDVISDWLLLQT SLVFQEGEPI+LRCHSWRN+PL+K+ F+Q+GKSK FSY  +N
Sbjct: 121 SDPVHLDVISDWLLLQTPSLVFQEGEPIMLRCHSWRNQPLNKITFYQDGKSKTFSYQRTN 180

Query: 644 FSIPQANQSHSGEYHCTGFIGKMSYSSQSVNITVQ 748
           FSIP+AN SH G+YHCT FIGKM +SSQ VNITVQ
Sbjct: 181 FSIPRANLSHRGQYHCTAFIGKMLHSSQPVNITVQ 215


>ref|NP_776963.1| high affinity immunoglobulin gamma Fc receptor I [Bos taurus].
          Length = 349

 Score =  175 bits (444), Expect = 5e-44
 Identities = 88/188 (46%), Positives = 123/188 (65%), Gaps = 2/188 (1%)
 Frame = +2

Query: 191 LWTALLFLAPVPGTHAVLP-KAEVKLQPAWINVLQEDSVTLTCQGDHDPGNTTTQWFHNG 367
           +W  +  +   P    V P KA + L+P W++V QE++VTL C+G H PG+T TQWF NG
Sbjct: 1   MWLIIALILGAPVAEQVDPTKAVITLKPPWVSVFQEENVTLLCEGPHRPGDTATQWFLNG 60

Query: 368 NFTWTENQPSFSFK-ARRASSGYYRCQTAYSSLSDPVHLDVISDWLLLQTSSLVFQEGEP 544
               T   P +S   A    SG Y+CQT  S LSDPV L++ SDWLLLQ +S VF EG+P
Sbjct: 61  TAIKTL-APRYSINSATFDDSGEYKCQTGLSMLSDPVQLEIHSDWLLLQVTSRVFTEGDP 119

Query: 545 ILLRCHSWRNKPLHKVAFFQNGKSKKFSYVDSNFSIPQANQSHSGEYHCTGFIGKMSYSS 724
           + LRCH+W+N P++K+ F+++GK  +FS  DS F+I Q N SH+G YHC+G   +  Y+S
Sbjct: 120 LALRCHAWKNMPVYKMLFYKDGKPFRFSSQDSEFTILQTNLSHNGIYHCSG-ERRRRYTS 178

Query: 725 QSVNITVQ 748
             V+IT++
Sbjct: 179 AGVSITIK 186


>ref|NP_001070870.1| low affinity immunoglobulin gamma Fc region receptor III isoform 1
           [Bos taurus].
          Length = 250

 Score =  166 bits (421), Expect = 2e-41
 Identities = 84/183 (45%), Positives = 111/183 (60%)
 Frame = +2

Query: 200 ALLFLAPVPGTHAVLPKAEVKLQPAWINVLQEDSVTLTCQGDHDPGNTTTQWFHNGNFTW 379
           ALL L       A   KA V L P W +VL  D VTL CQGD+   + +T+W+HNG    
Sbjct: 9   ALLLLVSADTQTADPSKAVVLLDPQWNHVLTNDRVTLKCQGDYPVEDNSTKWWHNGTLIS 68

Query: 380 TENQPSFSFKARRASSGYYRCQTAYSSLSDPVHLDVISDWLLLQTSSLVFQEGEPILLRC 559
           ++    F    +   SG Y+CQT  S+ SDPV L+V   WLLLQ +  V   G+PI L+C
Sbjct: 69  SQTPSYFIADVKVQDSGEYKCQTGLSAPSDPVKLEVHVGWLLLQVAQRVVNVGKPIRLKC 128

Query: 560 HSWRNKPLHKVAFFQNGKSKKFSYVDSNFSIPQANQSHSGEYHCTGFIGKMSYSSQSVNI 739
           HSW+  P+ KV +F+NG+ KK+S+ +S+F IP+A   HSG Y C G IG  + SS+SV I
Sbjct: 129 HSWKKTPVAKVQYFRNGRGKKYSHGNSDFHIPEAKLEHSGSYFCRGIIGSKNESSESVQI 188

Query: 740 TVQ 748
           TVQ
Sbjct: 189 TVQ 191


>ref|NP_001093780.1| high affinity immunoglobulin epsilon receptor subunit alpha [Bos
           taurus].
          Length = 260

 Score =  155 bits (392), Expect = 5e-38
 Identities = 79/197 (40%), Positives = 118/197 (59%), Gaps = 1/197 (0%)
 Frame = +2

Query: 161 MPCHPLGH-MLLWTALLFLAPVPGTHAVLPKAEVKLQPAWINVLQEDSVTLTCQGDHDPG 337
           MP  P+G   LLW ALL  +P  G  A + K++V L P W  +L+ D+VTLTC  +    
Sbjct: 1   MPTIPMGAPALLWIALLLFSP-DGMSAAIWKSKVSLNPPWRKILKGDAVTLTCGTNGSSE 59

Query: 338 NTTTQWFHNGNFTWTENQPSFSFKARRASSGYYRCQTAYSSLSDPVHLDVISDWLLLQTS 517
           + ++ W HNG    T N      KAR   SG Y+C+    ++S+PV+L+VISDWL++Q S
Sbjct: 60  DQSSLWIHNGTSFTTNNSRWHIVKARMQDSGEYQCRIKGFAISEPVYLNVISDWLIIQAS 119

Query: 518 SLVFQEGEPILLRCHSWRNKPLHKVAFFQNGKSKKFSYVDSNFSIPQANQSHSGEYHCTG 697
           + V  EGE + LRCHSW+N  + KV ++++ K+ K+ Y + N SI    + +SG Y+C G
Sbjct: 120 AEVMMEGESLFLRCHSWKNLNVFKVIYYKDNKALKYWYENHNISITNVTEGNSGIYYCVG 179

Query: 698 FIGKMSYSSQSVNITVQ 748
            I ++ Y S  + I V+
Sbjct: 180 RIQRLPYISNKLKIIVK 196


>ref|NP_001179494.1| Fc receptor-like B [Bos taurus].
          Length = 417

 Score =  117 bits (294), Expect = 1e-26
 Identities = 63/192 (32%), Positives = 98/192 (51%), Gaps = 8/192 (4%)
 Frame = +2

Query: 197 TALLFLAPVPGTHAVLPKAEVKLQPAWINVLQEDSVTLTCQGDH----DPGNTTTQWFHN 364
           T LL L P  G  A   K  + L P W  + + + VTL C G H    +    +T W+  
Sbjct: 5   TVLLLLVPSSGQAATPEKPILSLHPPWTTIFKGEKVTLRCDGYHPLLLELRPISTLWYLG 64

Query: 365 GNFTWTENQPSFSFKARRASSGYYRCQTAYSSLSDPVHLDVISDWLLLQTSSLVFQEGEP 544
                    PS+       + G YRCQT  + +SDP+HL V +DWL+LQ       EGEP
Sbjct: 65  HLLL-----PSYKKSIEVHTPGVYRCQTRGAPVSDPIHLSVSNDWLILQVPYAAVFEGEP 119

Query: 545 ILLRCHSWRNKPLHKVAFFQNGKSKKFSYVDSNFSIPQANQSHSGEYHCTGF----IGKM 712
           +++RC  W +K ++K+ ++ +G+  ++ +  +N+++PQA  S SG Y C+G     +   
Sbjct: 120 LVMRCRGWYDKTVYKLHYYHDGQPVRYFHSSANYTVPQARASDSGRYQCSGTMRIPVESA 179

Query: 713 SYSSQSVNITVQ 748
              S  V +TVQ
Sbjct: 180 PMFSAKVAVTVQ 191


>ref|XP_002685894.1| PREDICTED: Fc receptor-like B-like [Bos taurus].
          Length = 417

 Score =  117 bits (294), Expect = 1e-26
 Identities = 63/192 (32%), Positives = 98/192 (51%), Gaps = 8/192 (4%)
 Frame = +2

Query: 197 TALLFLAPVPGTHAVLPKAEVKLQPAWINVLQEDSVTLTCQGDH----DPGNTTTQWFHN 364
           T LL L P  G  A   K  + L P W  + + + VTL C G H    +    +T W+  
Sbjct: 5   TVLLLLVPSSGQAATPEKPILSLHPPWTTIFKGEKVTLRCDGYHPLLLELRPISTLWYLG 64

Query: 365 GNFTWTENQPSFSFKARRASSGYYRCQTAYSSLSDPVHLDVISDWLLLQTSSLVFQEGEP 544
                    PS+       + G YRCQT  + +SDP+HL V +DWL+LQ       EGEP
Sbjct: 65  HLLL-----PSYKKSIEVHTPGVYRCQTRGAPVSDPIHLSVSNDWLILQVPYAAVFEGEP 119

Query: 545 ILLRCHSWRNKPLHKVAFFQNGKSKKFSYVDSNFSIPQANQSHSGEYHCTGF----IGKM 712
           +++RC  W +K ++K+ ++ +G+  ++ +  +N+++PQA  S SG Y C+G     +   
Sbjct: 120 LVMRCRGWYDKTVYKLHYYHDGQPVRYFHSSANYTVPQARASDSGRYQCSGTMRIPVESA 179

Query: 713 SYSSQSVNITVQ 748
              S  V +TVQ
Sbjct: 180 PMFSAKVAVTVQ 191


>ref|XP_002686001.1| PREDICTED: Fc receptor-like 3 [Bos taurus].
          Length = 759

 Score = 89.4 bits (220), Expect = 4e-18
 Identities = 54/155 (34%), Positives = 83/155 (53%)
 Frame = +2

Query: 239 VLPKAEVKLQPAWINVLQEDSVTLTCQGDHDPGNTTTQWFHNGNFTWTENQPSFSFKARR 418
           V PKA + L P W     +D VTLTC+    P      W++N N     N+ S   +  +
Sbjct: 61  VTPKAFLLLNPPWSTNFHKDEVTLTCRDSLSPAQGDIYWYYNENLL---NKKSEEIQIHK 117

Query: 419 ASSGYYRCQTAYSSLSDPVHLDVISDWLLLQTSSLVFQEGEPILLRCHSWRNKPLHKVAF 598
             +GYY+C+T  SSLSDPVH+D   D L+LQ    VF EG+ ++LRC +   +   +  F
Sbjct: 118 --TGYYKCKTQRSSLSDPVHVDFSFDKLILQAPHSVF-EGDEVVLRCQA--REEAKEKRF 172

Query: 599 FQNGKSKKFSYVDSNFSIPQANQSHSGEYHCTGFI 703
           ++N        + SNF++ Q+   ++ +YHCT  +
Sbjct: 173 YRNE-----IQIQSNFTL-QSVSMNNDKYHCTALV 201


>ref|XP_593037.5| PREDICTED: Fc receptor-like 3 [Bos taurus].
          Length = 876

 Score = 89.4 bits (220), Expect = 4e-18
 Identities = 54/155 (34%), Positives = 83/155 (53%)
 Frame = +2

Query: 239 VLPKAEVKLQPAWINVLQEDSVTLTCQGDHDPGNTTTQWFHNGNFTWTENQPSFSFKARR 418
           V PKA + L P W     +D VTLTC+    P      W++N N     N+ S   +  +
Sbjct: 61  VTPKAFLLLNPPWSTNFHKDEVTLTCRDSLSPAQGDIYWYYNENLL---NKKSEEIQIHK 117

Query: 419 ASSGYYRCQTAYSSLSDPVHLDVISDWLLLQTSSLVFQEGEPILLRCHSWRNKPLHKVAF 598
             +GYY+C+T  SSLSDPVH+D   D L+LQ    VF EG+ ++LRC +   +   +  F
Sbjct: 118 --TGYYKCKTQRSSLSDPVHVDFSFDKLILQAPHSVF-EGDEVVLRCQA--REEAKEKRF 172

Query: 599 FQNGKSKKFSYVDSNFSIPQANQSHSGEYHCTGFI 703
           ++N        + SNF++ Q+   ++ +YHCT  +
Sbjct: 173 YRNE-----IQIQSNFTL-QSVSMNNDKYHCTALV 201


>ref|XP_002686003.1| PREDICTED: Fc receptor-like 4-like [Bos taurus].
          Length = 478

 Score = 79.0 bits (193), Expect = 6e-15
 Identities = 64/178 (35%), Positives = 86/178 (48%), Gaps = 5/178 (2%)
 Frame = +2

Query: 185 MLLWTALLFLAPVPGTHAVLPKAEVKLQPAWINVLQEDSVTLTCQGDHDPGNTTTQ---W 355
           +LLW + L LA V        K+ + +QP W  V   + V LTC G H       Q   W
Sbjct: 7   VLLWASFLVLATVH-------KSVISVQPPWTTVFHGERVNLTCNGFHFYAQEKLQGYRW 59

Query: 356 FHNGNFTWTENQPSFSFKARRASSGYYRCQTAYSSLSDPVHLDVISDWLLLQTSSLVFQE 535
           F +G     E  P  + + R   SG YRCQ   S  S+PVHL   S  L+LQ    VF E
Sbjct: 60  F-SGKARPRET-PGNTLEVR--DSGQYRCQAPGSLPSNPVHLIFSSASLILQAPYSVF-E 114

Query: 536 GEPILLRCHSWRNKPLHKVAFFQNGKSKKFSYVDSNFS--IPQANQSHSGEYHCTGFI 703
           G+ ++LRC     + L  V +  N   K  S  D +F   IP+A+ ++SG Y C GF+
Sbjct: 115 GDELVLRCQKRGREKLAVVKYTWN--RKIISGTDESFDLLIPKASLNNSGCYQCIGFL 170


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 37,906,839
Number of extensions: 1121821
Number of successful extensions: 6384
Number of sequences better than 1.0e-05: 16
Number of HSP's gapped: 6146
Number of HSP's successfully gapped: 16
Length of query: 315
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 213
Effective length of database: 14,306,398
Effective search space: 3047262774
Effective search space used: 3047262774
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002767
         (945 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_545775.2| PREDICTED: similar to Fc receptor-like and muci...   287   1e-77
Alignment   gi|XP_536141.2| PREDICTED: similar to Low affinity immunoglobul...   184   8e-47
Alignment   gi|XP_855551.1| PREDICTED: high affinity IgG Fc gamma receptor ...   169   3e-42
Alignment   gi|NP_001002976.1| high affinity immunoglobulin gamma Fc recept...   168   8e-42
Alignment   gi|NP_001104236.1| high affinity immunoglobulin epsilon recepto...   147   1e-35
Alignment   gi|XP_547521.2| PREDICTED: similar to Fc receptor-like 4 [Canis...    95   8e-20
Alignment   gi|XP_852095.1| PREDICTED: similar to Fc receptor-like and muci...    60   4e-09
Alignment   gi|XP_854859.1| PREDICTED: similar to Fc receptor-like 2 [Canis...    50   4e-06

>ref|XP_545775.2| PREDICTED: similar to Fc receptor-like and mucin-like 1 [Canis
           familiaris].
          Length = 774

 Score =  287 bits (734), Expect = 1e-77
 Identities = 159/291 (54%), Positives = 186/291 (63%), Gaps = 2/291 (0%)
 Frame = +2

Query: 2   LQNLSVLWGGIXXXXXXXXXXXXXXXXTCVLQEVMGIPSFLALPAARSDWADCMPCH-PL 178
           L NLSVLWGGI                  V QE+M I S L+LPAA SD A CMPC   L
Sbjct: 105 LMNLSVLWGGICQISREACACHTGAARADVCQELMRILSVLSLPAADSDQAGCMPCLCRL 164

Query: 179 GHMLLWTALLFLAPVPGTHAVLPKAEVKLQPAWINVLQEDSVTLTCQGDHDPGNTTTQWF 358
           G MLLW ALL LAPV GT A LPK+ + L+P WINVLQ DSVTL CQG H      TQW+
Sbjct: 165 GDMLLWAALLLLAPVAGTPAGLPKSVLDLEPPWINVLQGDSVTLKCQGAHR-AEEHTQWY 223

Query: 359 HNGNFTWTENQPSFSFKARRASSGYYRCQTAYSSLSDPVHLDVISDWLLLQTSSLVFQEG 538
           HNG+F     Q ++SF+A++  SG YRCQ   +S+SDPVHLDV SDWLLLQT  LVFQ+G
Sbjct: 224 HNGSFLPILVQSNYSFEAKKQDSGEYRCQMYQTSVSDPVHLDVTSDWLLLQTPRLVFQKG 283

Query: 539 EPILLRCHSWRNKPLHKVAFFQNGKSKKFSYVDSNFSIPQANQSHSGEYHCTGFIGKMSY 718
           E I LRCHSW+NK L+K+ FFQNGKSK+FS ++S F IP+AN SHSG YHCTG IG+M  
Sbjct: 284 ESIRLRCHSWKNKLLYKITFFQNGKSKQFSSLNSTFFIPEANLSHSGHYHCTGMIGQMLR 343

Query: 719 SSQSVNITVQGS-SLNNLLXXXXXXXXXXXXXXXXXXXXXXWFRLRPKRIS 868
            SQ V ITVQGS S ++ +                      W RLR K+ S
Sbjct: 344 LSQPVAITVQGSDSSDSSVVMTIVSAVAGTAVAAILAAVVAWLRLRRKQTS 394



 Score = 67.8 bits (164), Expect = 1e-11
 Identities = 31/82 (37%), Positives = 48/82 (58%)
 Frame = +2

Query: 458 SLSDPVHLDVISDWLLLQTSSLVFQEGEPILLRCHSWRNKPLHKVAFFQNGKSKKFSYVD 637
           + S P HL V  DWL+LQ       EG+P+ LRC +W++ PL +V F+++G +      +
Sbjct: 480 TFSKPFHLIVSYDWLILQGPVSPIFEGDPLTLRCQAWQDWPLAQVTFYRDGSAMGPPGPN 539

Query: 638 SNFSIPQANQSHSGEYHCTGFI 703
             FSI    ++ SG YHC+G +
Sbjct: 540 REFSIAVVQETDSGHYHCSGIL 561


>ref|XP_536141.2| PREDICTED: similar to Low affinity immunoglobulin gamma Fc region
           receptor III-A precursor (IgG Fc receptor III-2)
           (Fc-gamma RIII-alpha) (Fc-gamma RIIIa) (FcRIIIa)
           (Fc-gamma RIII) (FcRIII) (Antigen CD16-A) (FcR-10)
           [Canis familiaris].
          Length = 248

 Score =  184 bits (468), Expect = 8e-47
 Identities = 99/188 (52%), Positives = 118/188 (62%)
 Frame = +2

Query: 197 TALLFLAPVPGTHAVLPKAEVKLQPAWINVLQEDSVTLTCQGDHDPGNTTTQWFHNGNFT 376
           TALL L    GT A +PKA V L+P W  VL  DSVTL CQGDH   +  T W HNG   
Sbjct: 8   TALLLLVSA-GTQADVPKAVVVLEPKWNRVLTMDSVTLKCQGDHLLRDNYT-WLHNGRPI 65

Query: 377 WTENQPSFSFKARRASSGYYRCQTAYSSLSDPVHLDVISDWLLLQTSSLVFQEGEPILLR 556
             +        A   +SG YRCQT  S LSDPV L+V + WLLLQ   LVFQEGE I L+
Sbjct: 66  SNQISTYIIKNASIKNSGEYRCQTDQSKLSDPVQLEVHTGWLLLQVPRLVFQEGELIQLK 125

Query: 557 CHSWRNKPLHKVAFFQNGKSKKFSYVDSNFSIPQANQSHSGEYHCTGFIGKMSYSSQSVN 736
           CHSW+N P+  V +FQNG+ KKF Y +S + IP A   H+G Y C G IGK + SS++VN
Sbjct: 126 CHSWKNTPVRNVQYFQNGRGKKFFYNNSEYHIPAATSEHNGSYFCRGIIGKKNESSEAVN 185

Query: 737 ITVQGSSL 760
           I +QGSSL
Sbjct: 186 IIIQGSSL 193


>ref|XP_855551.1| PREDICTED: high affinity IgG Fc gamma receptor 1 [Canis
           familiaris].
          Length = 372

 Score =  169 bits (428), Expect = 3e-42
 Identities = 89/189 (47%), Positives = 117/189 (61%), Gaps = 1/189 (0%)
 Frame = +2

Query: 185 MLLWTALLFLAPVPGTHAVLPKAEVKLQPAWINVLQEDSVTLTCQGDHDPGNTTTQWFHN 364
           M L T LL   P  G      KA + LQP W++V QE+SVTL C+G H PG+++TQWF N
Sbjct: 1   MWLLTVLLLWVPA-GAQTDPVKAVITLQPPWVSVFQEESVTLWCEGPHLPGDSSTQWFLN 59

Query: 365 GNFTWTENQPSFSFKARRAS-SGYYRCQTAYSSLSDPVHLDVISDWLLLQTSSLVFQEGE 541
           G  T T   P +   A   + +G YRCQT  S LSDP+ L++  DWL+LQ S  VF EGE
Sbjct: 60  GTATQTLT-PRYRIAAASVNDNGEYRCQTGLSVLSDPIQLEIHRDWLILQVSGRVFTEGE 118

Query: 542 PILLRCHSWRNKPLHKVAFFQNGKSKKFSYVDSNFSIPQANQSHSGEYHCTGFIGKMSYS 721
           P+ LRCH W NK ++ V F+QNG   KFS  +S F+I +    H+G YHC+  +GK  Y 
Sbjct: 119 PLTLRCHGWNNKLVYNVLFYQNGTVLKFSPQNSEFTILKTTLHHNGIYHCSA-MGKHRYE 177

Query: 722 SQSVNITVQ 748
           S  V+IT++
Sbjct: 178 SAGVSITIK 186


>ref|NP_001002976.1| high affinity immunoglobulin gamma Fc receptor I [Canis lupus
           familiaris].
          Length = 372

 Score =  168 bits (425), Expect = 8e-42
 Identities = 89/189 (47%), Positives = 116/189 (61%), Gaps = 1/189 (0%)
 Frame = +2

Query: 185 MLLWTALLFLAPVPGTHAVLPKAEVKLQPAWINVLQEDSVTLTCQGDHDPGNTTTQWFHN 364
           M L T LL   P  G      KA + LQP W++V QE+SVTL C+G H PG+++TQWF N
Sbjct: 1   MWLLTVLLLWVPA-GAQTDPVKAVITLQPPWVSVFQEESVTLWCEGPHLPGDSSTQWFLN 59

Query: 365 GNFTWTENQPSFSFKARRAS-SGYYRCQTAYSSLSDPVHLDVISDWLLLQTSSLVFQEGE 541
           G  T T   P +   A   + +G YRCQT  S LSDP+ L +  DWL+LQ S  VF EGE
Sbjct: 60  GTATQTLT-PRYRIAAASVNDNGEYRCQTGLSVLSDPIQLGIHRDWLILQVSGRVFTEGE 118

Query: 542 PILLRCHSWRNKPLHKVAFFQNGKSKKFSYVDSNFSIPQANQSHSGEYHCTGFIGKMSYS 721
           P+ LRCH W NK ++ V F+QNG   KFS  +S F+I +    H+G YHC+  +GK  Y 
Sbjct: 119 PLTLRCHGWNNKLVYNVLFYQNGTVLKFSPQNSEFTILKTTLHHNGIYHCSA-MGKHRYE 177

Query: 722 SQSVNITVQ 748
           S  V+IT++
Sbjct: 178 SAGVSITIK 186


>ref|NP_001104236.1| high affinity immunoglobulin epsilon receptor subunit alpha [Canis
           lupus familiaris].
          Length = 252

 Score =  147 bits (372), Expect = 1e-35
 Identities = 81/197 (41%), Positives = 113/197 (57%), Gaps = 1/197 (0%)
 Frame = +2

Query: 161 MPCHPLGHMLLWTALLFLAPVPGTHAVLPKAEVKLQPAWINVLQEDSVTLTCQGDHDPGN 340
           MP    G  LLW ALL  +P   +   L K  V + P W  +L++DSVTLTC G++    
Sbjct: 1   MPASMGGPALLWLALLLSSPGVMSSDTL-KPTVSMNPPWNTILKDDSVTLTCTGNNSLEV 59

Query: 341 TTTQWFHNGNFTWTENQPSFSF-KARRASSGYYRCQTAYSSLSDPVHLDVISDWLLLQTS 517
            +  W HN N TW E        KA+   SG YRC+   S LSDPV+L V ++WL+LQ S
Sbjct: 60  DSAVWLHN-NTTWQETTSRLDINKAQIQDSGEYRCRENRSILSDPVYLTVFTEWLILQAS 118

Query: 518 SLVFQEGEPILLRCHSWRNKPLHKVAFFQNGKSKKFSYVDSNFSIPQANQSHSGEYHCTG 697
           + V  EGE  L+RCHSW+N  L KV ++++G   ++ Y + N SI      +SG Y C+G
Sbjct: 119 ANVVMEGESFLIRCHSWKNLRLTKVTYYKDGIPIRYWYENFNISISNVTTKNSGNYSCSG 178

Query: 698 FIGKMSYSSQSVNITVQ 748
            I +  Y+S+ +NI V+
Sbjct: 179 QIQQKGYTSKVLNIIVK 195


>ref|XP_547521.2| PREDICTED: similar to Fc receptor-like 4 [Canis familiaris].
          Length = 1052

 Score = 95.1 bits (235), Expect = 8e-20
 Identities = 64/181 (35%), Positives = 87/181 (48%), Gaps = 3/181 (1%)
 Frame = +2

Query: 215  APVPGTHAVLPKAEVKLQPAWINVLQEDSVTLTCQGDH---DPGNTTTQWFHNGNFTWTE 385
            APV G    +PKA + L P W    + D+VTLTC   H          QW+         
Sbjct: 486  APVSGQFEAVPKAVISLHPPWTVFFKGDAVTLTCHVSHIYTAKNRELYQWYLGTEIL--R 543

Query: 386  NQPSFSFKARRASSGYYRCQTAYSSLSDPVHLDVISDWLLLQTSSLVFQEGEPILLRCHS 565
              P  + K +  +SG Y+CQT  S LSD V L   +  L+LQ    VF EG+ + L+C +
Sbjct: 544  EIPGNTLKVQ--NSGEYKCQTQNSLLSDGVTLIFSTAKLILQAPPSVF-EGDSVTLKCQA 600

Query: 566  WRNKPLHKVAFFQNGKSKKFSYVDSNFSIPQANQSHSGEYHCTGFIGKMSYSSQSVNITV 745
              +  L   + ++NGK  K     S+F I QA    +GEYHC G     S+SS  + I V
Sbjct: 601  NVDLALKNKSLYKNGKMLKILDESSSFHIQQAGLKDNGEYHCAGSEINCSFSSNRIKIQV 660

Query: 746  Q 748
            Q
Sbjct: 661  Q 661



 Score = 88.2 bits (217), Expect = 1e-17
 Identities = 60/167 (35%), Positives = 79/167 (47%), Gaps = 2/167 (1%)
 Frame = +2

Query: 236 AVLPKAEVKLQPAWINVLQEDSVTLTCQGDHDPGNTTTQWFHNGNF--TWTENQPSFSFK 409
           A  PK  + L P W  V + ++VTLTC   H        W H   F        P  + K
Sbjct: 26  AAAPKPVISLHPPWTVVFKGETVTLTCHVPHLRAAEYITW-HLSYFGKDLLHKTPGNTLK 84

Query: 410 ARRASSGYYRCQTAYSSLSDPVHLDVISDWLLLQTSSLVFQEGEPILLRCHSWRNKPLHK 589
                SG +RCQT  S  SD V L   SDWL+LQ    VF EG+ ++LRC     + L  
Sbjct: 85  VH--DSGRFRCQTKDSPPSDSVRLIFSSDWLILQAPHTVF-EGDTLVLRCQVKGRQKLIT 141

Query: 590 VAFFQNGKSKKFSYVDSNFSIPQANQSHSGEYHCTGFIGKMSYSSQS 730
           V +  NGK    S    +  IPQA+ ++SG Y C GF+ +  Y  +S
Sbjct: 142 VKYSWNGKVISVSNQGQDLLIPQASLNNSGHYQCIGFLERDHYVYKS 188


>ref|XP_852095.1| PREDICTED: similar to Fc receptor-like and mucin-like 2 isoform a
           [Canis familiaris].
          Length = 306

 Score = 59.7 bits (143), Expect = 4e-09
 Identities = 40/121 (33%), Positives = 58/121 (47%), Gaps = 6/121 (4%)
 Frame = +2

Query: 176 LGHMLLW--TALLFLAPVPGTHAVLPKAEVKLQPAWINVLQEDSVTLTCQGDH----DPG 337
           +G   +W  TALL L P  G  A L K  + L P W  + + + VTL C G H    +  
Sbjct: 62  VGRASMWPLTALLLLVPSSGQAATLEKPILSLHPPWTTIFKGERVTLRCDGYHPLLLELR 121

Query: 338 NTTTQWFHNGNFTWTENQPSFSFKARRASSGYYRCQTAYSSLSDPVHLDVISDWLLLQTS 517
             +T W+  G+     ++ S   +    + G YRCQT  + +SDP+HL V +   L   S
Sbjct: 122 PISTLWY-LGHLLLPSHKKSIEVQ----TPGVYRCQTRGAPVSDPIHLSVSNGSALPSAS 176

Query: 518 S 520
           S
Sbjct: 177 S 177


>ref|XP_854859.1| PREDICTED: similar to Fc receptor-like 2 [Canis familiaris].
          Length = 462

 Score = 49.7 bits (117), Expect = 4e-06
 Identities = 33/91 (36%), Positives = 49/91 (53%), Gaps = 5/91 (5%)
 Frame = +2

Query: 491 SDWLLLQTSSLVFQEGEPILLRCHSWRNK-PLHKVAFFQNGKSKKFSYVDSNFSIPQANQ 667
           +DWL L+  S +F EG+ I L C    +K  +  +A++++GK   FS    +FSIP A  
Sbjct: 25  ADWLTLRAPSAIF-EGDRIDLICQRKTDKWKIQTMAYYKDGKKLHFSNEVFSFSIPSAVL 83

Query: 668 SHSGEYHCTG----FIGKMSYSSQSVNITVQ 748
           S SG Y C+     ++   S  S S+ I VQ
Sbjct: 84  SDSGSYSCSATVRIYLRYYSKKSNSIKIQVQ 114


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 39,347,651
Number of extensions: 1143095
Number of successful extensions: 6389
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 6131
Number of HSP's successfully gapped: 10
Length of query: 315
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 212
Effective length of database: 15,440,896
Effective search space: 3273469952
Effective search space used: 3273469952
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002767
         (945 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001002274.1| low affinity immunoglobulin gamma Fc region ...   324   8e-89
Alignment   gi|NP_001002273.1| low affinity immunoglobulin gamma Fc region ...   320   2e-87
Alignment   gi|NP_003992.3| low affinity immunoglobulin gamma Fc region rec...   312   2e-85
Alignment   gi|NP_001002275.1| low affinity immunoglobulin gamma Fc region ...   308   5e-84
Alignment   gi|NP_963857.3| low affinity immunoglobulin gamma Fc region rec...   303   1e-82
Alignment   gi|NP_001177757.1| low affinity immunoglobulin gamma Fc region ...   296   1e-80
Alignment   gi|NP_001129691.1| low affinity immunoglobulin gamma Fc region ...   248   7e-66
Alignment   gi|NP_067674.2| low affinity immunoglobulin gamma Fc region rec...   244   6e-65
Alignment   gi|NP_000561.3| low affinity immunoglobulin gamma Fc region rec...   184   8e-47
Alignment   gi|NP_001121064.1| low affinity immunoglobulin gamma Fc region ...   183   2e-46

>ref|NP_001002274.1| low affinity immunoglobulin gamma Fc region receptor II-b isoform 3
           precursor [Homo sapiens].
          Length = 291

 Score =  324 bits (830), Expect = 8e-89
 Identities = 167/280 (59%), Positives = 191/280 (68%)
 Frame = +2

Query: 104 MGIPSFLALPAARSDWADCMPCHPLGHMLLWTALLFLAPVPGTHAVLPKAEVKLQPAWIN 283
           MGI SFL + A  SDWADC    P GHMLLWTA+LFLAPV GT A  PKA +KL+P WIN
Sbjct: 1   MGILSFLPVLATESDWADCKSPQPWGHMLLWTAVLFLAPVAGTPAAPPKAVLKLEPQWIN 60

Query: 284 VLQEDSVTLTCQGDHDPGNTTTQWFHNGNFTWTENQPSFSFKARRASSGYYRCQTAYSSL 463
           VLQEDSVTLTC+G H P + + QWFHNGN   T  QPS+ FKA    SG Y CQT  +SL
Sbjct: 61  VLQEDSVTLTCRGTHSPESDSIQWFHNGNLIPTHTQPSYRFKANNNDSGEYTCQTGQTSL 120

Query: 464 SDPVHLDVISDWLLLQTSSLVFQEGEPILLRCHSWRNKPLHKVAFFQNGKSKKFSYVDSN 643
           SDPVHL V+S+WL+LQT  L FQEGE I+LRCHSW++KPL KV FFQNGKSKKFS  D N
Sbjct: 121 SDPVHLTVLSEWLVLQTPHLEFQEGETIVLRCHSWKDKPLVKVTFFQNGKSKKFSRSDPN 180

Query: 644 FSIPQANQSHSGEYHCTGFIGKMSYSSQSVNITVQGSSLNNLLXXXXXXXXXXXXXXXXX 823
           FSIPQAN SHSG+YHCTG IG   YSS+ V ITVQ  S + +                  
Sbjct: 181 FSIPQANHSHSGDYHCTGNIGYTLYSSKPVTITVQAPSSSPMGIIVAVVTGIAVAAIVAA 240

Query: 824 XXXXXWFRLRPKRISANHTDAEEAAKIXAERYITYSLLLH 943
                +   R KRISAN T+ +EA K+ AE  ITYSLL+H
Sbjct: 241 VVALIY--CRKKRISANPTNPDEADKVGAENTITYSLLMH 278


>ref|NP_001002273.1| low affinity immunoglobulin gamma Fc region receptor II-b isoform 2
           precursor [Homo sapiens].
          Length = 290

 Score =  320 bits (819), Expect = 2e-87
 Identities = 167/280 (59%), Positives = 191/280 (68%)
 Frame = +2

Query: 104 MGIPSFLALPAARSDWADCMPCHPLGHMLLWTALLFLAPVPGTHAVLPKAEVKLQPAWIN 283
           MGI SFL + A  SDWADC    P GHMLLWTA+LFLAPV GT A  PKA +KL+P WIN
Sbjct: 1   MGILSFLPVLATESDWADCKSPQPWGHMLLWTAVLFLAPVAGTPAP-PKAVLKLEPQWIN 59

Query: 284 VLQEDSVTLTCQGDHDPGNTTTQWFHNGNFTWTENQPSFSFKARRASSGYYRCQTAYSSL 463
           VLQEDSVTLTC+G H P + + QWFHNGN   T  QPS+ FKA    SG Y CQT  +SL
Sbjct: 60  VLQEDSVTLTCRGTHSPESDSIQWFHNGNLIPTHTQPSYRFKANNNDSGEYTCQTGQTSL 119

Query: 464 SDPVHLDVISDWLLLQTSSLVFQEGEPILLRCHSWRNKPLHKVAFFQNGKSKKFSYVDSN 643
           SDPVHL V+S+WL+LQT  L FQEGE I+LRCHSW++KPL KV FFQNGKSKKFS  D N
Sbjct: 120 SDPVHLTVLSEWLVLQTPHLEFQEGETIVLRCHSWKDKPLVKVTFFQNGKSKKFSRSDPN 179

Query: 644 FSIPQANQSHSGEYHCTGFIGKMSYSSQSVNITVQGSSLNNLLXXXXXXXXXXXXXXXXX 823
           FSIPQAN SHSG+YHCTG IG   YSS+ V ITVQ  S + +                  
Sbjct: 180 FSIPQANHSHSGDYHCTGNIGYTLYSSKPVTITVQAPSSSPMGIIVAVVTGIAVAAIVAA 239

Query: 824 XXXXXWFRLRPKRISANHTDAEEAAKIXAERYITYSLLLH 943
                +   R KRISAN T+ +EA K+ AE  ITYSLL+H
Sbjct: 240 VVALIY--CRKKRISANPTNPDEADKVGAENTITYSLLMH 277


>ref|NP_003992.3| low affinity immunoglobulin gamma Fc region receptor II-b isoform 1
           precursor [Homo sapiens].
          Length = 310

 Score =  312 bits (800), Expect = 2e-85
 Identities = 167/299 (55%), Positives = 191/299 (63%), Gaps = 19/299 (6%)
 Frame = +2

Query: 104 MGIPSFLALPAARSDWADCMPCHPLGHMLLWTALLFLAPVPGTHAVLPKAEVKLQPAWIN 283
           MGI SFL + A  SDWADC    P GHMLLWTA+LFLAPV GT A  PKA +KL+P WIN
Sbjct: 1   MGILSFLPVLATESDWADCKSPQPWGHMLLWTAVLFLAPVAGTPAAPPKAVLKLEPQWIN 60

Query: 284 VLQEDSVTLTCQGDHDPGNTTTQWFHNGNFTWTENQPSFSFKARRASSGYYRCQTAYSSL 463
           VLQEDSVTLTC+G H P + + QWFHNGN   T  QPS+ FKA    SG Y CQT  +SL
Sbjct: 61  VLQEDSVTLTCRGTHSPESDSIQWFHNGNLIPTHTQPSYRFKANNNDSGEYTCQTGQTSL 120

Query: 464 SDPVHLDVISDWLLLQTSSLVFQEGEPILLRCHSWRNKPLHKVAFFQNGKSKKFSYVDSN 643
           SDPVHL V+S+WL+LQT  L FQEGE I+LRCHSW++KPL KV FFQNGKSKKFS  D N
Sbjct: 121 SDPVHLTVLSEWLVLQTPHLEFQEGETIVLRCHSWKDKPLVKVTFFQNGKSKKFSRSDPN 180

Query: 644 FSIPQANQSHSGEYHCTGFIGKMSYSSQSVNITVQGSSLNNLLXXXXXXXXXXXXXXXXX 823
           FSIPQAN SHSG+YHCTG IG   YSS+ V ITVQ  S + +                  
Sbjct: 181 FSIPQANHSHSGDYHCTGNIGYTLYSSKPVTITVQAPSSSPMGIIVAVVTGIAVAAIVAA 240

Query: 824 XXXXXWFRLRPKRIS-------------------ANHTDAEEAAKIXAERYITYSLLLH 943
                +   R KRIS                   AN T+ +EA K+ AE  ITYSLL+H
Sbjct: 241 VVALIY--CRKKRISALPGYPECREMGETLPEKPANPTNPDEADKVGAENTITYSLLMH 297


>ref|NP_001002275.1| low affinity immunoglobulin gamma Fc region receptor II-b isoform 4
           precursor [Homo sapiens].
          Length = 309

 Score =  308 bits (789), Expect = 5e-84
 Identities = 167/299 (55%), Positives = 191/299 (63%), Gaps = 19/299 (6%)
 Frame = +2

Query: 104 MGIPSFLALPAARSDWADCMPCHPLGHMLLWTALLFLAPVPGTHAVLPKAEVKLQPAWIN 283
           MGI SFL + A  SDWADC    P GHMLLWTA+LFLAPV GT A  PKA +KL+P WIN
Sbjct: 1   MGILSFLPVLATESDWADCKSPQPWGHMLLWTAVLFLAPVAGTPAP-PKAVLKLEPQWIN 59

Query: 284 VLQEDSVTLTCQGDHDPGNTTTQWFHNGNFTWTENQPSFSFKARRASSGYYRCQTAYSSL 463
           VLQEDSVTLTC+G H P + + QWFHNGN   T  QPS+ FKA    SG Y CQT  +SL
Sbjct: 60  VLQEDSVTLTCRGTHSPESDSIQWFHNGNLIPTHTQPSYRFKANNNDSGEYTCQTGQTSL 119

Query: 464 SDPVHLDVISDWLLLQTSSLVFQEGEPILLRCHSWRNKPLHKVAFFQNGKSKKFSYVDSN 643
           SDPVHL V+S+WL+LQT  L FQEGE I+LRCHSW++KPL KV FFQNGKSKKFS  D N
Sbjct: 120 SDPVHLTVLSEWLVLQTPHLEFQEGETIVLRCHSWKDKPLVKVTFFQNGKSKKFSRSDPN 179

Query: 644 FSIPQANQSHSGEYHCTGFIGKMSYSSQSVNITVQGSSLNNLLXXXXXXXXXXXXXXXXX 823
           FSIPQAN SHSG+YHCTG IG   YSS+ V ITVQ  S + +                  
Sbjct: 180 FSIPQANHSHSGDYHCTGNIGYTLYSSKPVTITVQAPSSSPMGIIVAVVTGIAVAAIVAA 239

Query: 824 XXXXXWFRLRPKRIS-------------------ANHTDAEEAAKIXAERYITYSLLLH 943
                +   R KRIS                   AN T+ +EA K+ AE  ITYSLL+H
Sbjct: 240 VVALIY--CRKKRISALPGYPECREMGETLPEKPANPTNPDEADKVGAENTITYSLLMH 296


>ref|NP_963857.3| low affinity immunoglobulin gamma Fc region receptor II-c precursor
           [Homo sapiens].
          Length = 323

 Score =  303 bits (777), Expect = 1e-82
 Identities = 157/266 (59%), Positives = 179/266 (67%)
 Frame = +2

Query: 104 MGIPSFLALPAARSDWADCMPCHPLGHMLLWTALLFLAPVPGTHAVLPKAEVKLQPAWIN 283
           MGI SFL + A  SDWADC    P GHMLLWTA+LFLAPV GT A  PKA +KL+P WIN
Sbjct: 1   MGILSFLPVLATESDWADCKSPQPWGHMLLWTAVLFLAPVAGTPAAPPKAVLKLEPQWIN 60

Query: 284 VLQEDSVTLTCQGDHDPGNTTTQWFHNGNFTWTENQPSFSFKARRASSGYYRCQTAYSSL 463
           VLQEDSVTLTC+G H P + +  WFHNGN   T  QPS+ FKA    SG Y CQT  +SL
Sbjct: 61  VLQEDSVTLTCRGTHSPESDSIPWFHNGNLIPTHTQPSYRFKANNNDSGEYTCQTGQTSL 120

Query: 464 SDPVHLDVISDWLLLQTSSLVFQEGEPILLRCHSWRNKPLHKVAFFQNGKSKKFSYVDSN 643
           SDPVHL V+S+WL+LQT  L FQEGE I+LRCHSW++KPL KV FFQNGKSKKFS  D N
Sbjct: 121 SDPVHLTVLSEWLVLQTPHLEFQEGETIVLRCHSWKDKPLVKVTFFQNGKSKKFSRSDPN 180

Query: 644 FSIPQANQSHSGEYHCTGFIGKMSYSSQSVNITVQGSSLNNLLXXXXXXXXXXXXXXXXX 823
           FSIPQAN SHSG+YHCTG IG   YSS+ V ITVQ  S + +                  
Sbjct: 181 FSIPQANHSHSGDYHCTGNIGYTLYSSKPVTITVQAPSSSPMGIIVAVVTGIAVAAIVAA 240

Query: 824 XXXXXWFRLRPKRISANHTDAEEAAK 901
                +   R KRISAN TD  +AA+
Sbjct: 241 VVALIY--CRKKRISANSTDPVKAAQ 264


>ref|NP_001177757.1| low affinity immunoglobulin gamma Fc region receptor II-b isoform 5
           [Homo sapiens].
          Length = 303

 Score =  296 bits (759), Expect = 1e-80
 Identities = 162/299 (54%), Positives = 186/299 (62%), Gaps = 19/299 (6%)
 Frame = +2

Query: 104 MGIPSFLALPAARSDWADCMPCHPLGHMLLWTALLFLAPVPGTHAVLPKAEVKLQPAWIN 283
           MGI SFL + A  SDWADC    P GHMLLWTA+LFLA  P       KA +KL+P WIN
Sbjct: 1   MGILSFLPVLATESDWADCKSPQPWGHMLLWTAVLFLAAPP-------KAVLKLEPQWIN 53

Query: 284 VLQEDSVTLTCQGDHDPGNTTTQWFHNGNFTWTENQPSFSFKARRASSGYYRCQTAYSSL 463
           VLQEDSVTLTC+G H P + + QWFHNGN   T  QPS+ FKA    SG Y CQT  +SL
Sbjct: 54  VLQEDSVTLTCRGTHSPESDSIQWFHNGNLIPTHTQPSYRFKANNNDSGEYTCQTGQTSL 113

Query: 464 SDPVHLDVISDWLLLQTSSLVFQEGEPILLRCHSWRNKPLHKVAFFQNGKSKKFSYVDSN 643
           SDPVHL V+S+WL+LQT  L FQEGE I+LRCHSW++KPL KV FFQNGKSKKFS  D N
Sbjct: 114 SDPVHLTVLSEWLVLQTPHLEFQEGETIVLRCHSWKDKPLVKVTFFQNGKSKKFSRSDPN 173

Query: 644 FSIPQANQSHSGEYHCTGFIGKMSYSSQSVNITVQGSSLNNLLXXXXXXXXXXXXXXXXX 823
           FSIPQAN SHSG+YHCTG IG   YSS+ V ITVQ  S + +                  
Sbjct: 174 FSIPQANHSHSGDYHCTGNIGYTLYSSKPVTITVQAPSSSPMGIIVAVVTGIAVAAIVAA 233

Query: 824 XXXXXWFRLRPKRIS-------------------ANHTDAEEAAKIXAERYITYSLLLH 943
                +   R KRIS                   AN T+ +EA K+ AE  ITYSLL+H
Sbjct: 234 VVALIY--CRKKRISALPGYPECREMGETLPEKPANPTNPDEADKVGAENTITYSLLMH 290


>ref|NP_001129691.1| low affinity immunoglobulin gamma Fc region receptor II-a isoform 1
           [Homo sapiens].
          Length = 317

 Score =  248 bits (632), Expect = 7e-66
 Identities = 130/236 (55%), Positives = 153/236 (64%), Gaps = 1/236 (0%)
 Frame = +2

Query: 197 TALLFLAPVPGTHAVLPKAEVKLQPAWINVLQEDSVTLTCQGDHDPGNTTTQWFHNGNFT 376
           T LL LA      A  PKA +KL+P WINVLQEDSVTLTCQG   P + + QWFHNGN  
Sbjct: 23  TVLLLLASADSQAAAPPKAVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLI 82

Query: 377 WTENQPSFSFKARRASSGYYRCQTAYSSLSDPVHLDVISDWLLLQTSSLVFQEGEPILLR 556
            T  QPS+ FKA    SG Y CQT  +SLSDPVHL V+S+WL+LQT  L FQEGE I+LR
Sbjct: 83  PTHTQPSYRFKANNNDSGEYTCQTGQTSLSDPVHLTVLSEWLVLQTPHLEFQEGETIMLR 142

Query: 557 CHSWRNKPLHKVAFFQNGKSKKFSYVDSNFSIPQANQSHSGEYHCTGFIGKMSYSSQSVN 736
           CHSW++KPL KV FFQNGKS+KFS++D  FSIPQAN SHSG+YHCTG IG   +SS+ V 
Sbjct: 143 CHSWKDKPLVKVTFFQNGKSQKFSHLDPTFSIPQANHSHSGDYHCTGNIGYTLFSSKPVT 202

Query: 737 ITVQGSSL-NNLLXXXXXXXXXXXXXXXXXXXXXXWFRLRPKRISANHTDAEEAAK 901
           ITVQ  S+ ++                            R KRISAN TD  +AA+
Sbjct: 203 ITVQVPSMGSSSPMGIIVAVVIATAVAAIVAAVVALIYCRKKRISANSTDPVKAAQ 258


>ref|NP_067674.2| low affinity immunoglobulin gamma Fc region receptor II-a isoform 2
           [Homo sapiens].
          Length = 316

 Score =  244 bits (624), Expect = 6e-65
 Identities = 130/236 (55%), Positives = 154/236 (65%), Gaps = 1/236 (0%)
 Frame = +2

Query: 197 TALLFLAPVPGTHAVLPKAEVKLQPAWINVLQEDSVTLTCQGDHDPGNTTTQWFHNGNFT 376
           T LL LA    + A  PKA +KL+P WINVLQEDSVTLTCQG   P + + QWFHNGN  
Sbjct: 23  TVLLLLASAD-SQAAPPKAVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLI 81

Query: 377 WTENQPSFSFKARRASSGYYRCQTAYSSLSDPVHLDVISDWLLLQTSSLVFQEGEPILLR 556
            T  QPS+ FKA    SG Y CQT  +SLSDPVHL V+S+WL+LQT  L FQEGE I+LR
Sbjct: 82  PTHTQPSYRFKANNNDSGEYTCQTGQTSLSDPVHLTVLSEWLVLQTPHLEFQEGETIMLR 141

Query: 557 CHSWRNKPLHKVAFFQNGKSKKFSYVDSNFSIPQANQSHSGEYHCTGFIGKMSYSSQSVN 736
           CHSW++KPL KV FFQNGKS+KFS++D  FSIPQAN SHSG+YHCTG IG   +SS+ V 
Sbjct: 142 CHSWKDKPLVKVTFFQNGKSQKFSHLDPTFSIPQANHSHSGDYHCTGNIGYTLFSSKPVT 201

Query: 737 ITVQGSSL-NNLLXXXXXXXXXXXXXXXXXXXXXXWFRLRPKRISANHTDAEEAAK 901
           ITVQ  S+ ++                            R KRISAN TD  +AA+
Sbjct: 202 ITVQVPSMGSSSPMGIIVAVVIATAVAAIVAAVVALIYCRKKRISANSTDPVKAAQ 257


>ref|NP_000561.3| low affinity immunoglobulin gamma Fc region receptor III-B
           precursor [Homo sapiens].
          Length = 233

 Score =  184 bits (468), Expect = 8e-47
 Identities = 95/196 (48%), Positives = 126/196 (64%), Gaps = 1/196 (0%)
 Frame = +2

Query: 185 MLLWTALLFLAPVPGTHAVLPKAEVKLQPAWINVLQEDSVTLTCQGDHDPGNTTTQWFHN 364
           +LL TALL L         LPKA V L+P W +VL++DSVTL CQG + P + +TQWFHN
Sbjct: 4   LLLPTALLLLVSAGMRTEDLPKAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHN 63

Query: 365 GNFTWTENQPSFSFKARRASSGYYRCQTAYSSLSDPVHLDVISDWLLLQTSSLVFQEGEP 544
            N   ++    F   A    SG YRCQT  S+LSDPV L+V   WLLLQ    VF+E +P
Sbjct: 64  ENLISSQASSYFIDAATVNDSGEYRCQTNLSTLSDPVQLEVHIGWLLLQAPRWVFKEEDP 123

Query: 545 ILLRCHSWRNKPLHKVAFFQNGKSKKFSYVDSNFSIPQANQSHSGEYHCTGFIGKMSYSS 724
           I LRCHSW+N  LHKV + QNGK +K+ + +S+F IP+A    SG Y C G +G  + SS
Sbjct: 124 IHLRCHSWKNTALHKVTYLQNGKDRKYFHHNSDFHIPKATLKDSGSYFCRGLVGSKNVSS 183

Query: 725 QSVNITV-QGSSLNNL 769
           ++VNIT+ QG +++ +
Sbjct: 184 ETVNITITQGLAVSTI 199


>ref|NP_001121064.1| low affinity immunoglobulin gamma Fc region receptor III-A isoform
           b precursor [Homo sapiens].
          Length = 289

 Score =  183 bits (465), Expect = 2e-46
 Identities = 96/204 (47%), Positives = 128/204 (62%), Gaps = 1/204 (0%)
 Frame = +2

Query: 161 MPCHPLGHMLLWTALLFLAPVPGTHAVLPKAEVKLQPAWINVLQEDSVTLTCQGDHDPGN 340
           + C  +  +LL TALL L    G    LPKA V L+P W  VL++DSVTL CQG + P +
Sbjct: 32  LQCGIMWQLLLPTALLLLVSA-GMRTDLPKAVVFLEPQWYRVLEKDSVTLKCQGAYSPED 90

Query: 341 TTTQWFHNGNFTWTENQPSFSFKARRASSGYYRCQTAYSSLSDPVHLDVISDWLLLQTSS 520
            +TQWFHN +   ++    F   A    SG YRCQT  S+LSDPV L+V   WLLLQ   
Sbjct: 91  NSTQWFHNESLISSQASSYFIDAATVDDSGEYRCQTNLSTLSDPVQLEVHIGWLLLQAPR 150

Query: 521 LVFQEGEPILLRCHSWRNKPLHKVAFFQNGKSKKFSYVDSNFSIPQANQSHSGEYHCTGF 700
            VF+E +PI LRCHSW+N  LHKV + QNGK +K+ + +S+F IP+A    SG Y C G 
Sbjct: 151 WVFKEEDPIHLRCHSWKNTALHKVTYLQNGKGRKYFHHNSDFYIPKATLKDSGSYFCRGL 210

Query: 701 IGKMSYSSQSVNITV-QGSSLNNL 769
            G  + SS++VNIT+ QG +++ +
Sbjct: 211 FGSKNVSSETVNITITQGLAVSTI 234


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 38,807,327
Number of extensions: 1133795
Number of successful extensions: 6499
Number of sequences better than 1.0e-05: 30
Number of HSP's gapped: 6241
Number of HSP's successfully gapped: 32
Length of query: 315
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 213
Effective length of database: 14,934,836
Effective search space: 3181120068
Effective search space used: 3181120068
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002767
         (945 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_034317.1| low affinity immunoglobulin gamma Fc region rec...   262   2e-70
Alignment   gi|NP_001070657.1| low affinity immunoglobulin gamma Fc region ...   244   5e-65
Alignment   gi|NP_034318.2| low affinity immunoglobulin gamma Fc region rec...   213   2e-55
Alignment   gi|NP_653142.2| Fc receptor, IgG, low affinity IV [Mus musculus].    177   8e-45
Alignment   gi|NP_034316.1| high affinity immunoglobulin gamma Fc receptor ...   170   1e-42
Alignment   gi|NP_001025155.2| Fc receptor-like B [Mus musculus].                117   1e-26
Alignment   gi|NP_034314.2| high affinity immunoglobulin epsilon receptor s...   114   1e-25
Alignment   gi|NP_899045.3| Fc receptor-like protein 5 isoform a [Mus muscu...    83   4e-16
Alignment   gi|NP_001153687.1| Fc receptor-like A isoform 1 [Mus musculus].       69   5e-12
Alignment   gi|NP_660123.1| Fc receptor-like A isoform 2 [Mus musculus].          69   5e-12

>ref|NP_034317.1| low affinity immunoglobulin gamma Fc region receptor II-b isoform 2
           [Mus musculus].
          Length = 293

 Score =  262 bits (670), Expect = 2e-70
 Identities = 145/281 (51%), Positives = 179/281 (63%), Gaps = 1/281 (0%)
 Frame = +2

Query: 104 MGIPSFLALPAARSDWADCMPCHPLGHMLLWTALLFLAPVPGTHAVLPKAEVKLQPAWIN 283
           MGI  FL +P   S+W   +    L HMLLWTA+L LA   GTH  LPKA VKL+P WI 
Sbjct: 1   MGILPFLLIPM-ESNWTVHVFSRTLCHMLLWTAVLNLAA--GTHD-LPKAVVKLEPPWIQ 56

Query: 284 VLQEDSVTLTCQGDHDPGNTTTQWFHNGNFTWTENQPSFSFKARRASSGYYRCQTAYSSL 463
           VL+ED+VTLTC+G H+PGN++TQWFHNG    ++ Q S++FKA    SG YRCQ   + L
Sbjct: 57  VLKEDTVTLTCEGTHNPGNSSTQWFHNGRSIRSQVQASYTFKATVNDSGEYRCQMEQTRL 116

Query: 464 SDPVHLDVISDWLLLQTSSLVFQEGEPILLRCHSWRNKPLHKVAFFQNGKSKKFSYVDSN 643
           SDPV L VISDWLLLQT  LVF EGE I LRCHSWRNK L++++FF N KS ++ +  SN
Sbjct: 117 SDPVDLGVISDWLLLQTPQLVFLEGETITLRCHSWRNKLLNRISFFHNEKSVRYHHYSSN 176

Query: 644 FSIPQANQSHSGEYHCTGFIGKMSYSSQSVNITVQG-SSLNNLLXXXXXXXXXXXXXXXX 820
           FSIP+AN SHSG+Y+C G +G+  + S+ V ITVQG  S  +L                 
Sbjct: 177 FSIPKANHSHSGDYYCKGSLGRTLHQSKPVTITVQGPKSSRSLPVLTIVAAVTGIAVAAI 236

Query: 821 XXXXXXWFRLRPKRISANHTDAEEAAKIXAERYITYSLLLH 943
                    L+ K++  N  D EEAAK  AE  ITYSLL H
Sbjct: 237 VIILVSLVYLKKKQVPDNPPDLEEAAKTEAENTITYSLLKH 277


>ref|NP_001070657.1| low affinity immunoglobulin gamma Fc region receptor II-b isoform 1
           [Mus musculus].
          Length = 340

 Score =  244 bits (624), Expect = 5e-65
 Identities = 125/216 (57%), Positives = 155/216 (71%)
 Frame = +2

Query: 104 MGIPSFLALPAARSDWADCMPCHPLGHMLLWTALLFLAPVPGTHAVLPKAEVKLQPAWIN 283
           MGI  FL +P   S+W   +    L HMLLWTA+L LA   GTH  LPKA VKL+P WI 
Sbjct: 1   MGILPFLLIPM-ESNWTVHVFSRTLCHMLLWTAVLNLAA--GTHD-LPKAVVKLEPPWIQ 56

Query: 284 VLQEDSVTLTCQGDHDPGNTTTQWFHNGNFTWTENQPSFSFKARRASSGYYRCQTAYSSL 463
           VL+ED+VTLTC+G H+PGN++TQWFHNG    ++ Q S++FKA    SG YRCQ   + L
Sbjct: 57  VLKEDTVTLTCEGTHNPGNSSTQWFHNGRSIRSQVQASYTFKATVNDSGEYRCQMEQTRL 116

Query: 464 SDPVHLDVISDWLLLQTSSLVFQEGEPILLRCHSWRNKPLHKVAFFQNGKSKKFSYVDSN 643
           SDPV L VISDWLLLQT  LVF EGE I LRCHSWRNK L++++FF N KS ++ +  SN
Sbjct: 117 SDPVDLGVISDWLLLQTPQLVFLEGETITLRCHSWRNKLLNRISFFHNEKSVRYHHYSSN 176

Query: 644 FSIPQANQSHSGEYHCTGFIGKMSYSSQSVNITVQG 751
           FSIP+AN SHSG+Y+C G +G+  + S+ V ITVQG
Sbjct: 177 FSIPKANHSHSGDYYCKGSLGRTLHQSKPVTITVQG 212


>ref|NP_034318.2| low affinity immunoglobulin gamma Fc region receptor III [Mus
           musculus].
          Length = 267

 Score =  213 bits (541), Expect = 2e-55
 Identities = 104/184 (56%), Positives = 128/184 (69%)
 Frame = +2

Query: 197 TALLFLAPVPGTHAVLPKAEVKLQPAWINVLQEDSVTLTCQGDHDPGNTTTQWFHNGNFT 376
           T LL  A      A LPKA VKL P WI VL+ED VTL C+G H+PGN++TQWFHN +  
Sbjct: 23  TILLLFAFADRQSAALPKAVVKLDPPWIQVLKEDMVTLMCEGTHNPGNSSTQWFHNWSSI 82

Query: 377 WTENQPSFSFKARRASSGYYRCQTAYSSLSDPVHLDVISDWLLLQTSSLVFQEGEPILLR 556
            ++ Q S++FKA    SG YRCQ   + LSDPV L VISDWLLLQT   VF EGE I LR
Sbjct: 83  RSQVQSSYTFKATVNDSGEYRCQMEQTRLSDPVDLGVISDWLLLQTPQRVFLEGETITLR 142

Query: 557 CHSWRNKPLHKVAFFQNGKSKKFSYVDSNFSIPQANQSHSGEYHCTGFIGKMSYSSQSVN 736
           CHSWRNK L++++FF N KS ++ +  SNFSIP+AN SHSG+Y+C G +G   + S+ V 
Sbjct: 143 CHSWRNKLLNRISFFHNEKSVRYHHYKSNFSIPKANHSHSGDYYCKGSLGSTQHQSKPVT 202

Query: 737 ITVQ 748
           ITVQ
Sbjct: 203 ITVQ 206


>ref|NP_653142.2| Fc receptor, IgG, low affinity IV [Mus musculus].
          Length = 249

 Score =  177 bits (450), Expect = 8e-45
 Identities = 91/187 (48%), Positives = 119/187 (63%)
 Frame = +2

Query: 185 MLLWTALLFLAPVPGTHAVLPKAEVKLQPAWINVLQEDSVTLTCQGDHDPGNTTTQWFHN 364
           +LL TAL+  A   G  A L KA V L P W+ VL+EDSVTL CQG   P + + +WFHN
Sbjct: 4   LLLPTALVLTA-FSGIQAGLQKAVVNLDPKWVRVLEEDSVTLRCQGTFSPEDNSIKWFHN 62

Query: 365 GNFTWTENQPSFSFKARRASSGYYRCQTAYSSLSDPVHLDVISDWLLLQTSSLVFQEGEP 544
            +    ++       AR   SG YRCQTA S++SDPV L+V   WLLLQT+  +FQEG+P
Sbjct: 63  ESLIPHQDANYVIQSARVKDSGMYRCQTALSTISDPVQLEVHMGWLLLQTTKWLFQEGDP 122

Query: 545 ILLRCHSWRNKPLHKVAFFQNGKSKKFSYVDSNFSIPQANQSHSGEYHCTGFIGKMSYSS 724
           I LRCHSW+N+P+ KV + QNGK KK+ + +S   IP+A  + SG Y C G IG  + SS
Sbjct: 123 IHLRCHSWQNRPVRKVTYLQNGKGKKYFHENSELLIPKATHNDSGSYFCRGLIGHNNKSS 182

Query: 725 QSVNITV 745
            S  I++
Sbjct: 183 ASFRISL 189


>ref|NP_034316.1| high affinity immunoglobulin gamma Fc receptor I precursor [Mus
           musculus].
          Length = 404

 Score =  170 bits (431), Expect = 1e-42
 Identities = 91/189 (48%), Positives = 120/189 (63%), Gaps = 1/189 (0%)
 Frame = +2

Query: 185 MLLWTALLFLAPVPGTHAVLPKAEVKLQPAWINVLQEDSVTLTCQGDHDPGNTTTQWFHN 364
           M L T LL   PV G      KA + LQP W+++ Q+++VTL C+G H PG+++TQWF N
Sbjct: 10  MWLLTTLLLWVPVGGEVVNATKAVITLQPPWVSIFQKENVTLWCEGPHLPGDSSTQWFIN 69

Query: 365 GNFTWTENQPSFSF-KARRASSGYYRCQTAYSSLSDPVHLDVISDWLLLQTSSLVFQEGE 541
           G        PS+S  +A    SG YRCQ   S  SDPV L + +DWLLLQ S  V  EGE
Sbjct: 70  GTAVQIST-PSYSIPEASFQDSGEYRCQIGSSMPSDPVQLQIHNDWLLLQASRRVLTEGE 128

Query: 542 PILLRCHSWRNKPLHKVAFFQNGKSKKFSYVDSNFSIPQANQSHSGEYHCTGFIGKMSYS 721
           P+ LRCH W+NK ++ V F++NGKS +FS  DS  +I + N SHSG YHC+G  G+  Y+
Sbjct: 129 PLALRCHGWKNKLVYNVVFYRNGKSFQFS-SDSEVAILKTNLSHSGIYHCSG-TGRHRYT 186

Query: 722 SQSVNITVQ 748
           S  V+ITV+
Sbjct: 187 SAGVSITVK 195


>ref|NP_001025155.2| Fc receptor-like B [Mus musculus].
          Length = 427

 Score =  117 bits (293), Expect = 1e-26
 Identities = 65/196 (33%), Positives = 104/196 (53%), Gaps = 8/196 (4%)
 Frame = +2

Query: 185 MLLWTALLFLAPVPGTHAVLPKAEVKLQPAWINVLQEDSVTLTCQGDH----DPGNTTTQ 352
           M +  ALL L P  G  A L K  + L P W  + + + VTL C G H    +    +T 
Sbjct: 1   MWMLAALLLLVPRSGKAATLEKPVLTLHPPWTTIFKGERVTLRCDGYHPLLLELRPISTL 60

Query: 353 WFHNGNFTWTENQPSFSFKARRASSGYYRCQTAYSSLSDPVHLDVISDWLLLQTSSLVFQ 532
           W+  G+     ++ S   +A     G YRCQT  + +SDP+HL V +DWL+LQ       
Sbjct: 61  WYL-GHVLLPSHKKSIEVQA----PGVYRCQTRGAPVSDPIHLSVSNDWLILQVPYAAVF 115

Query: 533 EGEPILLRCHSWRNKPLHKVAFFQNGKSKKFSYVDSNFSIPQANQSHSGEYHCTGF---- 700
           EGEP+++RC  W +K ++K+ ++ +G++ ++ +  +N+++ QA  S SG Y C+G     
Sbjct: 116 EGEPLVMRCRGWYDKVVYKLHYYHDGQAVRYFHSSTNYTVLQARASDSGHYQCSGTMRIP 175

Query: 701 IGKMSYSSQSVNITVQ 748
           +      S  V +TVQ
Sbjct: 176 VESAPMFSSKVAVTVQ 191


>ref|NP_034314.2| high affinity immunoglobulin epsilon receptor subunit alpha
           precursor [Mus musculus].
          Length = 250

 Score =  114 bits (285), Expect = 1e-25
 Identities = 66/186 (35%), Positives = 98/186 (52%), Gaps = 1/186 (0%)
 Frame = +2

Query: 191 LWTALLFLAPVPGTHAVLPKAEVKLQPAWINVLQEDSVTLTCQGD-HDPGNTTTQWFHNG 367
           L  ALLF++ +        K+ + L P WI +   + VTL+C G+ H   N+TT+W HNG
Sbjct: 9   LCLALLFMS-LDVILTATEKSVLTLDPPWIRIFTGEKVTLSCYGNNHLQMNSTTKWIHNG 67

Query: 368 NFTWTENQPSFSFKARRASSGYYRCQTAYSSLSDPVHLDVISDWLLLQTSSLVFQEGEPI 547
             +   +       A    SG Y CQ      S PV+L+V  DWLLLQTS+ +       
Sbjct: 68  TVSEVNSSHLVIVSATVQDSGKYICQKQGLFKSKPVYLNVTQDWLLLQTSADMVLVHGSF 127

Query: 548 LLRCHSWRNKPLHKVAFFQNGKSKKFSYVDSNFSIPQANQSHSGEYHCTGFIGKMSYSSQ 727
            +RCH W+N  + KV +++N  +  +SY +S  SI +A  + SG YHC G++ ++ Y S 
Sbjct: 128 DIRCHGWKNWNVRKVIYYRNDHAFNYSY-ESPVSIREATLNDSGTYHCKGYLRQVKYESD 186

Query: 728 SVNITV 745
              I V
Sbjct: 187 KFRIAV 192


>ref|NP_899045.3| Fc receptor-like protein 5 isoform a [Mus musculus].
          Length = 596

 Score = 82.8 bits (203), Expect = 4e-16
 Identities = 58/193 (30%), Positives = 91/193 (47%), Gaps = 7/193 (3%)
 Frame = +2

Query: 191 LWTALLFLAPVPGTHAVLPKAEVKLQPAWINVLQEDSVTLTCQGDHDPGNTTTQWFHNGN 370
           +W  LL + PV G H    ++ V LQP W    + + VTLTC          T+W+    
Sbjct: 14  MWLTLLVVTPVNGQHEAAQQSVVSLQPPWTTFFRGEVVTLTCYRFGFSVPQKTKWYQKRK 73

Query: 371 FTWTENQPSFSFKARRA---SSGYYRCQTAYSSLSDPVHLDVISDWLLLQTSSLVFQEGE 541
            T  +   +   KA       SG Y CQ      S  V+++   D+L+LQ    VF EG+
Sbjct: 74  -TVKQTPGALVIKAHTLKVHESGEYWCQADSLLPSMHVNVEFSEDFLVLQAPPAVF-EGD 131

Query: 542 PILLRCHSWRNKPLHKVAFFQNGKSKKFSYVDSNFSIPQANQSHSGEYHCTG----FIGK 709
            ++LRC++ +      + F+++GK+       S F I +AN   +G+Y CT       G 
Sbjct: 132 SVVLRCYAKKGIEAETLTFYKDGKALTLHPQSSEFYIHRANLKDNGQYKCTSKKKWSFGS 191

Query: 710 MSYSSQSVNITVQ 748
           + Y+S +V + VQ
Sbjct: 192 L-YTSNTVVVQVQ 203


>ref|NP_001153687.1| Fc receptor-like A isoform 1 [Mus musculus].
          Length = 353

 Score = 68.9 bits (167), Expect = 5e-12
 Identities = 46/148 (31%), Positives = 67/148 (45%), Gaps = 4/148 (2%)
 Frame = +2

Query: 317 QGDHDPGNTTTQWFHNGNFTWTENQPSFSFKARRASSGYYRCQTAYSSLSDPVHLDVISD 496
           +GD D G+ T             ++  F FK      GY        + S P HL V  D
Sbjct: 55  EGDEDDGDMTQS-----------SEAGFQFK------GY--------TFSKPFHLSVSYD 89

Query: 497 WLLLQTSSLVFQEGEPILLRCHSWRNKPLHKVAFFQNGKSKKFSYVDSNFSIPQANQSHS 676
           WL+LQ  + +  EG+ ++L C +W++ PL +V F++ G +       S FSI    +S  
Sbjct: 90  WLILQGPATLIFEGDTLVLHCRAWQDWPLTQVIFYREGSALGPPGPKSEFSITMVQKSDG 149

Query: 677 GEYHCTGFIGKMSYSSQS----VNITVQ 748
           G YHC+G        S+     V ITVQ
Sbjct: 150 GHYHCSGIFRSPGPGSREAASPVAITVQ 177


>ref|NP_660123.1| Fc receptor-like A isoform 2 [Mus musculus].
          Length = 352

 Score = 68.9 bits (167), Expect = 5e-12
 Identities = 46/148 (31%), Positives = 67/148 (45%), Gaps = 4/148 (2%)
 Frame = +2

Query: 317 QGDHDPGNTTTQWFHNGNFTWTENQPSFSFKARRASSGYYRCQTAYSSLSDPVHLDVISD 496
           +GD D G+ T             ++  F FK      GY        + S P HL V  D
Sbjct: 54  EGDEDDGDMTQS-----------SEAGFQFK------GY--------TFSKPFHLSVSYD 88

Query: 497 WLLLQTSSLVFQEGEPILLRCHSWRNKPLHKVAFFQNGKSKKFSYVDSNFSIPQANQSHS 676
           WL+LQ  + +  EG+ ++L C +W++ PL +V F++ G +       S FSI    +S  
Sbjct: 89  WLILQGPATLIFEGDTLVLHCRAWQDWPLTQVIFYREGSALGPPGPKSEFSITMVQKSDG 148

Query: 677 GEYHCTGFIGKMSYSSQS----VNITVQ 748
           G YHC+G        S+     V ITVQ
Sbjct: 149 GHYHCSGIFRSPGPGSREAASPVAITVQ 176


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 32,811,235
Number of extensions: 942122
Number of successful extensions: 5064
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 4900
Number of HSP's successfully gapped: 13
Length of query: 315
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 214
Effective length of database: 12,583,923
Effective search space: 2692959522
Effective search space used: 2692959522
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002767
         (945 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001028185.1| low affinity immunoglobulin gamma Fc region ...   518   e-147
Alignment   gi|NP_001028183.1| high affinity immunoglobulin gamma Fc recept...   173   1e-43
Alignment   gi|XP_003125725.1| PREDICTED: high affinity immunoglobulin epsi...   163   1e-40
Alignment   gi|NP_999556.1| low affinity immunoglobulin gamma Fc region rec...   159   2e-39
Alignment   gi|XP_001929174.1| PREDICTED: high affinity immunoglobulin epsi...   152   2e-37
Alignment   gi|XP_003361390.1| PREDICTED: Fc receptor-like B-like [Sus scro...   117   9e-27
Alignment   gi|XP_001925993.1| PREDICTED: Fc receptor-like B [Sus scrofa].       117   9e-27
Alignment   gi|XP_003125740.2| PREDICTED: Fc receptor-like protein 3 [Sus s...   112   3e-25
Alignment   gi|XP_003125741.1| PREDICTED: LOW QUALITY PROTEIN: Fc receptor-...    93   2e-19
Alignment   gi|XP_001927593.3| PREDICTED: Fc receptor-like protein 4-like [...    83   2e-16

>ref|NP_001028185.1| low affinity immunoglobulin gamma Fc region receptor II-b [Sus
           scrofa].
          Length = 297

 Score =  518 bits (1334), Expect = e-147
 Identities = 252/280 (90%), Positives = 253/280 (90%)
 Frame = +2

Query: 104 MGIPSFLALPAARSDWADCMPCHPLGHMLLWTALLFLAPVPGTHAVLPKAEVKLQPAWIN 283
           MGIPSFLALPA RSDWADCMPCHPLGHMLLWTALLFLAPVPGTHAVLPKAEVKLQPAWIN
Sbjct: 1   MGIPSFLALPATRSDWADCMPCHPLGHMLLWTALLFLAPVPGTHAVLPKAEVKLQPAWIN 60

Query: 284 VLQEDSVTLTCQGDHDPGNTTTQWFHNGNFTWTENQPSFSFKARRASSGYYRCQTAYSSL 463
           VLQEDSVTLTCQGDHDPGNTTTQWFHNGNFTWTENQPSFSFKARRASSG+YRCQTAYSSL
Sbjct: 61  VLQEDSVTLTCQGDHDPGNTTTQWFHNGNFTWTENQPSFSFKARRASSGHYRCQTAYSSL 120

Query: 464 SDPVHLDVISDWLLLQTSSLVFQEGEPILLRCHSWRNKPLHKVAFFQNGKSKKFSYVDSN 643
           SDPVHLDVISDWLLLQTSSLVFQEGEPILLRCHSWRNKPLHKVAFFQNGKSKKFSYVDSN
Sbjct: 121 SDPVHLDVISDWLLLQTSSLVFQEGEPILLRCHSWRNKPLHKVAFFQNGKSKKFSYVDSN 180

Query: 644 FSIPQANQSHSGEYHCTGFIGKMSYSSQSVNITVQGSSLNNLLXXXXXXXXXXXXXXXXX 823
           FSIPQANQSHSGEYHCTGFIGKMSYSSQSVNITVQGSSLNNLL                 
Sbjct: 181 FSIPQANQSHSGEYHCTGFIGKMSYSSQSVNITVQGSSLNNLLVTIVVAVVAWIVAMAIA 240

Query: 824 XXXXXWFRLRPKRISANHTDAEEAAKIXAERYITYSLLLH 943
                WFRLR KRISANHTDAEEAAKI AE  ITYSLLLH
Sbjct: 241 AAIAAWFRLRRKRISANHTDAEEAAKIEAEDTITYSLLLH 280


>ref|NP_001028183.1| high affinity immunoglobulin gamma Fc receptor I [Sus scrofa].
          Length = 346

 Score =  173 bits (439), Expect = 1e-43
 Identities = 90/187 (48%), Positives = 119/187 (63%), Gaps = 1/187 (0%)
 Frame = +2

Query: 191 LWTALLFLAPVP-GTHAVLPKAEVKLQPAWINVLQEDSVTLTCQGDHDPGNTTTQWFHNG 367
           +W  ++ L  VP G      KA + LQP W++V QE++VTL C+G H PG+++TQWF NG
Sbjct: 1   MWLLIILLLCVPTGGQMDQAKAVITLQPPWVSVFQEENVTLQCEGPHLPGDSSTQWFLNG 60

Query: 368 NFTWTENQPSFSFKARRASSGYYRCQTAYSSLSDPVHLDVISDWLLLQTSSLVFQEGEPI 547
               T         A    SG YRCQT  S  SDPV L+V  DWLLLQ SS VF EGEP+
Sbjct: 61  TAIETLTPRYRIAAAGINDSGEYRCQTGLSVPSDPVQLEVHKDWLLLQVSSRVFTEGEPL 120

Query: 548 LLRCHSWRNKPLHKVAFFQNGKSKKFSYVDSNFSIPQANQSHSGEYHCTGFIGKMSYSSQ 727
            LRCH WRNK ++ + F+QNGK+ KFS  +S F+I + N SH+G YHC+G +    Y+S 
Sbjct: 121 ALRCHGWRNKLMYNILFYQNGKTFKFSPRNSEFTILKTNLSHNGIYHCSG-MRVHRYTSA 179

Query: 728 SVNITVQ 748
            V+IT++
Sbjct: 180 GVSITIK 186


>ref|XP_003125725.1| PREDICTED: high affinity immunoglobulin epsilon receptor subunit
           alpha-like [Sus scrofa].
          Length = 261

 Score =  163 bits (413), Expect = 1e-40
 Identities = 85/191 (44%), Positives = 121/191 (63%), Gaps = 1/191 (0%)
 Frame = +2

Query: 188 LLWTALLFLAPVPGTHAVLPKAEVKLQPAWINVLQEDSVTLTCQGDHDPGNTTTQWFHNG 367
           LLW ALL  +P  G  AV+ +++V L P W  + + ++VTLTC G++   N  T W HN 
Sbjct: 10  LLWIALLLFSP-DGMAAVIQESQVSLNPPWNRIFRGENVTLTCIGNYSLENYPTNWTHN- 67

Query: 368 NFTWTENQPSFSFK-ARRASSGYYRCQTAYSSLSDPVHLDVISDWLLLQTSSLVFQEGEP 544
           N T      S+  K A+   SG YRCQ+   ++S+PVHL+VISDWLLLQTS  V +EG+ 
Sbjct: 68  NKTLEVKTSSWDLKNAKPGDSGKYRCQSKDFTMSEPVHLEVISDWLLLQTSVPVVREGQS 127

Query: 545 ILLRCHSWRNKPLHKVAFFQNGKSKKFSYVDSNFSIPQANQSHSGEYHCTGFIGKMSYSS 724
            LLRCH W+N  ++KV ++++GK+ K+ Y + N SI  A +  SG Y CTG I K+  +S
Sbjct: 128 FLLRCHGWKNLNVYKVIYYKDGKALKYWYENHNLSITNAKREDSGSYWCTGIIQKIPKNS 187

Query: 725 QSVNITVQGSS 757
            ++ IT+Q  S
Sbjct: 188 TTLTITIQTDS 198


>ref|NP_999556.1| low affinity immunoglobulin gamma Fc region receptor III [Sus
           scrofa].
          Length = 256

 Score =  159 bits (403), Expect = 2e-39
 Identities = 85/187 (45%), Positives = 110/187 (58%), Gaps = 1/187 (0%)
 Frame = +2

Query: 197 TALLFLAPVPGTHAV-LPKAEVKLQPAWINVLQEDSVTLTCQGDHDPGNTTTQWFHNGNF 373
           TALL L    GTHA   PK+ V L P W  +L++DSVTL CQG + PG+ +T+W  NG  
Sbjct: 8   TALLLLVSA-GTHAEDPPKSVVILDPPWDRLLEKDSVTLKCQGAYPPGDDSTEWRWNGTL 66

Query: 374 TWTENQPSFSFKARRASSGYYRCQTAYSSLSDPVHLDVISDWLLLQTSSLVFQEGEPILL 553
              +        A   +SG Y C+T  S+ SDP+ L+V   WLLLQ    V QEGE I L
Sbjct: 67  ISNKASSYSITDATVGNSGEYTCKTGLSAQSDPLRLEVYKGWLLLQAPRWVVQEGESIRL 126

Query: 554 RCHSWRNKPLHKVAFFQNGKSKKFSYVDSNFSIPQANQSHSGEYHCTGFIGKMSYSSQSV 733
           RCH+W+N  + KV +FQNG  KKFS+ +  + IP A     G Y C G I   + SS++V
Sbjct: 127 RCHTWKNITIQKVQYFQNGMGKKFSHQNFEYHIPNATLKDGGSYFCRGIIKNYNLSSEAV 186

Query: 734 NITVQGS 754
            +TVQGS
Sbjct: 187 KVTVQGS 193


>ref|XP_001929174.1| PREDICTED: high affinity immunoglobulin epsilon receptor subunit
           alpha-like [Sus scrofa].
          Length = 239

 Score =  152 bits (385), Expect = 2e-37
 Identities = 77/175 (44%), Positives = 112/175 (64%), Gaps = 1/175 (0%)
 Frame = +2

Query: 236 AVLPKAEVKLQPAWINVLQEDSVTLTCQGDHDPGNTTTQWFHNGNFTWTENQPSFSFK-A 412
           AV+ +++V L P W  + + ++VTLTC G++   N  T W HN N T      S+  K A
Sbjct: 3   AVIQESQVSLNPPWNRIFRGENVTLTCIGNYSLENYPTNWTHN-NKTLEVKTSSWDLKNA 61

Query: 413 RRASSGYYRCQTAYSSLSDPVHLDVISDWLLLQTSSLVFQEGEPILLRCHSWRNKPLHKV 592
           +   SG YRCQ+   ++S+PVHL+VISDWLLLQTS  V +EG+  LLRCH W+N  ++KV
Sbjct: 62  KPGDSGKYRCQSKDFTMSEPVHLEVISDWLLLQTSVPVVREGQSFLLRCHGWKNLNVYKV 121

Query: 593 AFFQNGKSKKFSYVDSNFSIPQANQSHSGEYHCTGFIGKMSYSSQSVNITVQGSS 757
            ++++GK+ K+ Y + N SI  A +  SG Y CTG I K+  +S ++ IT+Q  S
Sbjct: 122 IYYKDGKALKYWYENHNLSITNAKREDSGSYWCTGIIQKIPKNSTTLTITIQTDS 176


>ref|XP_003361390.1| PREDICTED: Fc receptor-like B-like [Sus scrofa].
          Length = 415

 Score =  117 bits (293), Expect = 9e-27
 Identities = 65/196 (33%), Positives = 105/196 (53%), Gaps = 10/196 (5%)
 Frame = +2

Query: 191 LWTALLFLAPVP--GTHAVLPKAEVKLQPAWINVLQEDSVTLTCQGDH----DPGNTTTQ 352
           +W+   FL  VP  G  A L K  + L P W  + + + VTL C G H    +    +T 
Sbjct: 1   MWSLAAFLLLVPSIGQAATLEKPILSLHPPWTTIFKGERVTLRCDGYHPLLLELRPISTL 60

Query: 353 WFHNGNFTWTENQPSFSFKARRASSGYYRCQTAYSSLSDPVHLDVISDWLLLQTSSLVFQ 532
           W+  G+     ++ S   +    + G YRCQT  + +SDP+HL V +DWL+LQ    V  
Sbjct: 61  WYL-GHLLLPSHKKSIEVQ----TPGIYRCQTRGAPVSDPIHLSVSNDWLILQVPYAVVF 115

Query: 533 EGEPILLRCHSWRNKPLHKVAFFQNGKSKKFSYVDSNFSIPQANQSHSGEYHCTGF---- 700
           EGEP+++RC  W +K ++K+ ++Q+ +  ++ +  +N+++PQA  S SG Y C+G     
Sbjct: 116 EGEPLVMRCRGWYDKVVYKLHYYQDDQPVRYFHSSANYTVPQARASDSGRYQCSGTMRIP 175

Query: 701 IGKMSYSSQSVNITVQ 748
           +      S  V +TVQ
Sbjct: 176 VESAPMFSAKVAVTVQ 191


>ref|XP_001925993.1| PREDICTED: Fc receptor-like B [Sus scrofa].
          Length = 425

 Score =  117 bits (293), Expect = 9e-27
 Identities = 65/196 (33%), Positives = 105/196 (53%), Gaps = 10/196 (5%)
 Frame = +2

Query: 191 LWTALLFLAPVP--GTHAVLPKAEVKLQPAWINVLQEDSVTLTCQGDH----DPGNTTTQ 352
           +W+   FL  VP  G  A L K  + L P W  + + + VTL C G H    +    +T 
Sbjct: 1   MWSLAAFLLLVPSIGQAATLEKPILSLHPPWTTIFKGERVTLRCDGYHPLLLELRPISTL 60

Query: 353 WFHNGNFTWTENQPSFSFKARRASSGYYRCQTAYSSLSDPVHLDVISDWLLLQTSSLVFQ 532
           W+  G+     ++ S   +    + G YRCQT  + +SDP+HL V +DWL+LQ    V  
Sbjct: 61  WYL-GHLLLPSHKKSIEVQ----TPGIYRCQTRGAPVSDPIHLSVSNDWLILQVPYAVVF 115

Query: 533 EGEPILLRCHSWRNKPLHKVAFFQNGKSKKFSYVDSNFSIPQANQSHSGEYHCTGF---- 700
           EGEP+++RC  W +K ++K+ ++Q+ +  ++ +  +N+++PQA  S SG Y C+G     
Sbjct: 116 EGEPLVMRCRGWYDKVVYKLHYYQDDQPVRYFHSSANYTVPQARASDSGRYQCSGTMRIP 175

Query: 701 IGKMSYSSQSVNITVQ 748
           +      S  V +TVQ
Sbjct: 176 VESAPMFSAKVAVTVQ 191


>ref|XP_003125740.2| PREDICTED: Fc receptor-like protein 3 [Sus scrofa].
          Length = 695

 Score =  112 bits (280), Expect = 3e-25
 Identities = 67/192 (34%), Positives = 102/192 (53%), Gaps = 4/192 (2%)
 Frame = +2

Query: 185 MLLWTALLFLAPVPGTHAVLPKAEVKLQPAWINVLQEDSVTLTCQGDHDPGNTTTQWFHN 364
           MLLW  LL LAP      V+PKA + L P W    + D VTLTC+  + P      W++N
Sbjct: 1   MLLWLLLLILAPGRDQSGVIPKAFLLLNPPWSTNFKGDKVTLTCKDSYSPSQGHISWYYN 60

Query: 365 GNFTWTENQPSFSFKARRASSGYYRCQTAYSSLSDPVHLDVISDWLLLQTSSLVFQEGEP 544
                 +N  +         +G Y C+T  SS SDPVH+D +SDWL+LQ    +F EG+ 
Sbjct: 61  EKLL-DKNSEAIQID----QTGDYSCKTQRSSFSDPVHVDFLSDWLILQAPYPIF-EGDD 114

Query: 545 ILLRCHSWRNKPLHKVAFFQNGKSKKFSYVDSNFSIPQANQSHSGEYHCT----GFIGKM 712
           ++LRC   R +   +  F++N +    +Y +S+F++   ++ H G+YHC+     F G  
Sbjct: 115 VILRCPR-REESTSETVFYKNERKISSNY-ESSFTLTSVSRDH-GKYHCSASKKSFWGTK 171

Query: 713 SYSSQSVNITVQ 748
             +S+ + I VQ
Sbjct: 172 KENSKPLMIQVQ 183


>ref|XP_003125741.1| PREDICTED: LOW QUALITY PROTEIN: Fc receptor-like protein 5-like
           [Sus scrofa].
          Length = 925

 Score = 93.2 bits (230), Expect = 2e-19
 Identities = 67/192 (34%), Positives = 89/192 (46%), Gaps = 4/192 (2%)
 Frame = +2

Query: 185 MLLWTALLFLAPVPGTHAVLPKAEVKLQPAWINVLQEDSVTLTCQ--GDHDPGNTTT-QW 355
           MLLW +LL LAPV G  A  PK  + L P W    Q ++V LTC     H P      +W
Sbjct: 1   MLLWVSLLVLAPVSGQFATEPKPVISLHPLWTTFFQGETVMLTCNTFRFHAPEKIKLYRW 60

Query: 356 FHNGNFTWTENQPSFSFKARRASSGYYRCQTAYSSLSDPVHLDVISDWLLLQTSSLVFQE 535
           +  G         +         +G Y+CQ   S  SD VHL   S  L+LQ    VF E
Sbjct: 61  YLEGEI----QSETLGNTHEVRETGMYKCQAQDSPPSDAVHLLFSSANLILQAPPYVF-E 115

Query: 536 GEPILLRCHSWRNKPLHKVAFFQNGKSKKFSYVDSNFSIPQANQSHSGEYHCTGF-IGKM 712
            E ++LRC +  N  L+ +  +++G+        S F I QA    +GEY CTG      
Sbjct: 116 KESVVLRCQAKANTELNGMTLYKHGEVLGVPKKTSEFRIYQAGLKDNGEYRCTGLKKDNE 175

Query: 713 SYSSQSVNITVQ 748
           + SS +V I VQ
Sbjct: 176 TISSNAVKIEVQ 187



 Score = 53.1 bits (126), Expect = 2e-07
 Identities = 49/172 (28%), Positives = 78/172 (45%), Gaps = 19/172 (11%)
 Frame = +2

Query: 290 QEDSVTLTCQGDHDPGNTTTQWFHNGNFTWTENQPSFS-------FKARRASSGYYRC-- 442
           +E ++TLTC+          Q        +T  QP +        F  +R  SG YRC  
Sbjct: 204 EEGTLTLTCETQLSSQRPDVQLQFRFFRDYTSPQPYWRSSPELQIFTIQREDSGSYRCEA 263

Query: 443 QTAYSSL---SDPVHLDV---ISDWLLLQTSSLVFQEGEPILLRCHSWRNKPLHKVAFFQ 604
           QT    L   S  + ++V   ++D  L     LVF+  E +L+   S    P+  V+FF+
Sbjct: 264 QTVTPHLQKQSQQLQINVQRIVADVRLYSRPELVFEGKELVLICSVSGVPAPI-TVSFFK 322

Query: 605 ----NGKSKKFSYVDSNFSIPQANQSHSGEYHCTGFIGKMSYSSQSVNITVQ 748
               N  +K  +  ++ F IP    SH+GEY+C       S+ SQ++ I+V+
Sbjct: 323 KRPWNKDTKIVTSSETEFKIPAVESSHAGEYYCAAGKNHRSFPSQTLTISVR 374


>ref|XP_001927593.3| PREDICTED: Fc receptor-like protein 4-like [Sus scrofa].
          Length = 578

 Score = 83.2 bits (204), Expect = 2e-16
 Identities = 51/160 (31%), Positives = 75/160 (46%), Gaps = 1/160 (0%)
 Frame = +2

Query: 221 VPGTHAVLPKAEVKLQPAWINVLQEDSVTLTCQGDHDPGNTTTQWFH-NGNFTWTENQPS 397
           + G  A +P++ + LQP W    Q + + LTC G         +W+  N    +    P 
Sbjct: 67  IMGITAAIPRSVISLQPPWTTAFQGERINLTCNGFQGSAPAKVKWYRKNFRKRYPRETPG 126

Query: 398 FSFKARRASSGYYRCQTAYSSLSDPVHLDVISDWLLLQTSSLVFQEGEPILLRCHSWRNK 577
            + + R   SG Y+CQ   S LS+PV+L       +LQ    VF EG+ ++LRC     +
Sbjct: 127 NTLEVR--DSGEYKCQVPGSLLSNPVYLLFTPASFILQAPHSVF-EGDELVLRCQKRGKE 183

Query: 578 PLHKVAFFQNGKSKKFSYVDSNFSIPQANQSHSGEYHCTG 697
            L  V +  NGK    S       IPQA+ ++SG Y C G
Sbjct: 184 RLTSVKYTWNGKIISNSNKGVELLIPQASLNNSGSYQCIG 223


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 24,423,749
Number of extensions: 720985
Number of successful extensions: 4208
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 4033
Number of HSP's successfully gapped: 15
Length of query: 315
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 216
Effective length of database: 8,879,129
Effective search space: 1917891864
Effective search space used: 1917891864
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002767
         (945 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr04                                                         513   e-143

>Sscrofa_Chr04 
||          Length = 143465943

 Score =  513 bits (259), Expect = e-143
 Identities = 259/259 (100%)
 Strand = Plus / Minus

                                                                            
Query: 236      gcagttctcccaaaggctgaggtgaagcttcagcctgcatggatcaatgtgctccaggag 295
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96901346 gcagttctcccaaaggctgaggtgaagcttcagcctgcatggatcaatgtgctccaggag 96901287

                                                                            
Query: 296      gattctgtgacactgacgtgccagggcgaccatgaccctgggaacaccaccacccagtgg 355
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96901286 gattctgtgacactgacgtgccagggcgaccatgaccctgggaacaccaccacccagtgg 96901227

                                                                            
Query: 356      ttccataatgggaacttcacctggaccgagaaccagcccagcttcagctttaaggccagg 415
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96901226 ttccataatgggaacttcacctggaccgagaaccagcccagcttcagctttaaggccagg 96901167

                                                                            
Query: 416      agagctagcagcggatactacaggtgccagactgcctactccagtctcagcgaccctgtg 475
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96901166 agagctagcagcggatactacaggtgccagactgcctactccagtctcagcgaccctgtg 96901107

                                   
Query: 476      catctggatgtgatttctg 494
                |||||||||||||||||||
Sbjct: 96901106 catctggatgtgatttctg 96901088



 Score =  511 bits (258), Expect = e-142
 Identities = 261/262 (99%)
 Strand = Plus / Minus

                                                                            
Query: 489      tttctgactggctgctgctccaaacctctagtctggttttccaggaaggggagcccatct 548
                |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96895502 tttcagactggctgctgctccaaacctctagtctggttttccaggaaggggagcccatct 96895443

                                                                            
Query: 549      tgctgaggtgccatagctggagaaacaagcctctgcataaggttgcatttttccagaatg 608
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96895442 tgctgaggtgccatagctggagaaacaagcctctgcataaggttgcatttttccagaatg 96895383

                                                                            
Query: 609      gaaaatctaagaagttttcctatgtggattccaacttctccatcccacaagcaaaccaga 668
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96895382 gaaaatctaagaagttttcctatgtggattccaacttctccatcccacaagcaaaccaga 96895323

                                                                            
Query: 669      gtcatagtggcgagtaccactgcacaggatttatcgggaagatgtcgtactcatcacagt 728
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96895322 gtcatagtggcgagtaccactgcacaggatttatcgggaagatgtcgtactcatcacagt 96895263

                                      
Query: 729      ctgtgaacatcactgtccaagg 750
                ||||||||||||||||||||||
Sbjct: 96895262 ctgtgaacatcactgtccaagg 96895241



 Score =  426 bits (215), Expect = e-117
 Identities = 215/215 (100%)
 Strand = Plus / Minus

                                                                            
Query: 1        tctccagaatttgtctgtcctctggggtggaatctgtcgagccttgagagaagcctgtct 60
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96908203 tctccagaatttgtctgtcctctggggtggaatctgtcgagccttgagagaagcctgtct 96908144

                                                                            
Query: 61       tgcgctggcgctgccagaggcaacctgcgtactccaggaggtgatggggatcccctcgtt 120
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96908143 tgcgctggcgctgccagaggcaacctgcgtactccaggaggtgatggggatcccctcgtt 96908084

                                                                            
Query: 121      cctagccctccccgctgccaggagtgactgggctgattgcatgccctgccatcctttggg 180
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96908083 cctagccctccccgctgccaggagtgactgggctgattgcatgccctgccatcctttggg 96908024

                                                   
Query: 181      ccacatgctcctgtggacagctctgctattcctgg 215
                |||||||||||||||||||||||||||||||||||
Sbjct: 96908023 ccacatgctcctgtggacagctctgctattcctgg 96907989



 Score =  226 bits (114), Expect = 2e-56
 Identities = 120/122 (98%)
 Strand = Plus / Minus

                                                                            
Query: 748      agggtccagcttgaacaacttgctggtgacgatagttgtggctgtggttgcttggattgt 807
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96894562 agggtccagcttgaacaacttgctggtgacgatagttgtggctgtggttgcttggattgt 96894503

                                                                            
Query: 808      tgccatggctattgctgctgccatagcagcctggttccgcctcaggccaaagcggatttc 867
                ||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 96894502 tgcaatggctattgctgctgccatagcagcctggttccgcctcaggcgaaagcggatttc 96894443

                  
Query: 868      ag 869
                ||
Sbjct: 96894442 ag 96894441



 Score = 79.8 bits (40), Expect = 2e-12
 Identities = 40/40 (100%)
 Strand = Plus / Minus

                                                        
Query: 867      cagccaatcacactgatgctgaagaggctgccaaaattga 906
                ||||||||||||||||||||||||||||||||||||||||
Sbjct: 96889754 cagccaatcacactgatgctgaagaggctgccaaaattga 96889715


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 28,342,216
Number of extensions: 164
Number of successful extensions: 164
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 164
Number of HSP's successfully gapped: 5
Length of query: 945
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 924
Effective length of database: 2,808,413,156
Effective search space: 2594973756144
Effective search space used: 2594973756144
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)