Animal-Genome cDNA 20110601C-002810


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002810
         (1248 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001039367.1| macrosialin [Bos taurus].                         308   6e-84
Alignment   gi|NP_001068592.1| lysosome-associated membrane glycoprotein 1 ...    57   3e-08
Alignment   gi|NP_001106715.1| lysosomal-associated membrane protein 2 isof...    52   8e-07
Alignment   gi|NP_001029742.1| lysosomal-associated membrane protein 2 isof...    51   2e-06

>ref|NP_001039367.1| macrosialin [Bos taurus].
          Length = 335

 Score =  308 bits (789), Expect = 6e-84
 Identities = 149/201 (74%), Positives = 163/201 (81%)
 Frame = +2

Query: 434  QEAIGDYTWTNGSQPCVQLQAQIQIRVLYPTQGGGEAWGISVLNPNKTKALGGCEGAHPH 613
            +EAIGDYTW+NGSQPCV+LQAQIQIRVLYPTQGGGEAWGISVLNPN+TKA GGCEG H H
Sbjct: 135  KEAIGDYTWSNGSQPCVRLQAQIQIRVLYPTQGGGEAWGISVLNPNRTKAQGGCEGTHSH 194

Query: 614  VRLSFPYGQLTFGFKQQPQESTVYLNYMAVEYNVSFPRAAQWTFSVQNSSLRDLQTPVGR 793
            + LSFP GQL+FGFKQ P +S VYLNYMAVEYNVSFP+A QWTFSVQNSSLRDLQTP+G 
Sbjct: 195  LLLSFPSGQLSFGFKQDPLQSAVYLNYMAVEYNVSFPQAVQWTFSVQNSSLRDLQTPLGH 254

Query: 794  SYSCRNASIILSTAFHLDLLSLKLQAAQLPPTGNFGPSFSCPSDQXXXXXXXXXXXXXXX 973
            S+SCRNASII+S A HLDLLSLKLQAAQL P+G FGPSFSCP+D+               
Sbjct: 255  SFSCRNASIIVSPALHLDLLSLKLQAAQLSPSGAFGPSFSCPNDKSILLPLIIGLILLGL 314

Query: 974  XXXXXXXXCIIRRRPPAYQPL 1036
                    CIIRRRPP YQPL
Sbjct: 315  LTLVLVTFCIIRRRPPTYQPL 335


>ref|NP_001068592.1| lysosome-associated membrane glycoprotein 1 precursor [Bos taurus].
          Length = 409

 Score = 57.0 bits (136), Expect = 3e-08
 Identities = 46/165 (27%), Positives = 72/165 (43%), Gaps = 2/165 (1%)
 Frame = +2

Query: 440 AIGDYTWTNGSQPCVQLQAQIQIRVLYPTQGGGEAWGISVLNPNKTKALGGCEGAHPHVR 619
           A+  Y  +  +  C+     +Q+ V Y             +NPNKT   G C      + 
Sbjct: 210 AVFRYNVSGSNGTCLLASMGLQLNVTYRRVDNKTVTREFNVNPNKTTFGGNCSATLATLE 269

Query: 620 L-SFPYGQLTFGFKQQPQESTVYLNYMAVEYNVSFPRAAQWTFSVQNSSLRDLQTPVGRS 796
           L S     L   F      S V+L    V+ N++ P A + +F+  NSSLR LQ   G S
Sbjct: 270 LHSENLLLLALQFVMNESSSRVFLQ--GVQLNLTLPDAKEGSFTATNSSLRALQATAGNS 327

Query: 797 YSCR-NASIILSTAFHLDLLSLKLQAAQLPPTGNFGPSFSCPSDQ 928
           Y C     + ++++F L++  + LQA ++     FGP   C  D+
Sbjct: 328 YKCNAEQRLRVTSSFSLNMFRVWLQAFRV-DGDKFGPVEECQLDE 371


>ref|NP_001106715.1| lysosomal-associated membrane protein 2 isoform 1 [Bos taurus].
          Length = 407

 Score = 52.4 bits (124), Expect = 8e-07
 Identities = 41/165 (24%), Positives = 72/165 (43%), Gaps = 4/165 (2%)
 Frame = +2

Query: 443 IGDYTWTNGSQPCVQLQAQIQIRVLYPTQGGGEAWGISVLNPNKTKALGGCEGAHPHVRL 622
           +G Y+  N +  C+     +Q+ + +      +   +  +NPN T A G C+     +RL
Sbjct: 217 VGSYSVVNSNGTCLLATMGLQLNITHD-----KVASVFNINPNTTNATGSCQPQTALLRL 271

Query: 623 S---FPYGQLTFGFKQQPQESTVYLNYMAVEYNVSFPRAAQWTFSVQNSSLRDLQTPVGR 793
           S     Y    F  K    E+  YL     E NVS        +S+ N++L     P+G 
Sbjct: 272 SSSNIKYLDFVFAVKN---ENRFYLK----EVNVSMILVNGSVYSISNTNLSYWDAPLGS 324

Query: 794 SYSC-RNASIILSTAFHLDLLSLKLQAAQLPPTGNFGPSFSCPSD 925
           SY C +  ++ +S AF ++   L++Q   +   G +  +  C +D
Sbjct: 325 SYMCNKEQTVSVSGAFQINTFDLRVQPFSV-TEGKYSTAQDCSAD 368


>ref|NP_001029742.1| lysosomal-associated membrane protein 2 isoform 2 [Bos taurus].
          Length = 407

 Score = 51.2 bits (121), Expect = 2e-06
 Identities = 41/165 (24%), Positives = 71/165 (43%), Gaps = 4/165 (2%)
 Frame = +2

Query: 443 IGDYTWTNGSQPCVQLQAQIQIRVLYPTQGGGEAWGISVLNPNKTKALGGCEGAHPHVRL 622
           +G Y+  N +  C+     +Q+ + +      +   +  +NPN T A G C+     +RL
Sbjct: 217 VGSYSVVNSNGTCLLATMGLQLNITHD-----KVASVFNINPNTTNATGSCQPQTALLRL 271

Query: 623 S---FPYGQLTFGFKQQPQESTVYLNYMAVEYNVSFPRAAQWTFSVQNSSLRDLQTPVGR 793
           S     Y    F  K    E+  YL     E NVS        +S+ N++L     P+G 
Sbjct: 272 SSSNIKYLDFVFAVKN---ENRFYLK----EVNVSMILVNGSVYSISNTNLSYWDAPLGS 324

Query: 794 SYSC-RNASIILSTAFHLDLLSLKLQAAQLPPTGNFGPSFSCPSD 925
           SY C +  ++ +S AF ++   L++Q   +   G +  +  C  D
Sbjct: 325 SYMCNKEQTVSVSGAFQINTFDLRVQPFSV-TEGKYSTAQECSLD 368


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 45,795,173
Number of extensions: 1230474
Number of successful extensions: 5092
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 5081
Number of HSP's successfully gapped: 4
Length of query: 416
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 311
Effective length of database: 14,207,134
Effective search space: 4418418674
Effective search space used: 4418418674
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002810
         (1248 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_849733.1| PREDICTED: similar to CD68 antigen isoform 2 [C...   278   6e-75
Alignment   gi|XP_546594.1| PREDICTED: similar to CD68 antigen isoform 1 [C...   271   1e-72
Alignment   gi|XP_534193.2| PREDICTED: similar to Lysosome-associated membr...    60   6e-09
Alignment   gi|XP_856022.1| PREDICTED: similar to Lysosome-associated membr...    60   6e-09
Alignment   gi|XP_864590.1| PREDICTED: similar to Lysosome-associated membr...    49   8e-06
Alignment   gi|XP_851885.1| PREDICTED: similar to lysosomal-associated memb...    49   8e-06
Alignment   gi|XP_848889.1| PREDICTED: similar to lysosomal-associated memb...    49   8e-06

>ref|XP_849733.1| PREDICTED: similar to CD68 antigen isoform 2 [Canis familiaris].
          Length = 329

 Score =  278 bits (712), Expect = 6e-75
 Identities = 131/201 (65%), Positives = 156/201 (77%)
 Frame = +2

Query: 434  QEAIGDYTWTNGSQPCVQLQAQIQIRVLYPTQGGGEAWGISVLNPNKTKALGGCEGAHPH 613
            Q+AIGDYTWT GSQPC +LQA+IQI V+YPTQ GG+AWGISVLNPN TK  G C+GA PH
Sbjct: 129  QDAIGDYTWTTGSQPCARLQARIQIGVVYPTQAGGQAWGISVLNPNSTKPWGDCDGARPH 188

Query: 614  VRLSFPYGQLTFGFKQQPQESTVYLNYMAVEYNVSFPRAAQWTFSVQNSSLRDLQTPVGR 793
            + LSFP+GQL+FGF Q+PQ+ +VYL+Y+A++YNVSFP+AAQWTFS QN+SLR LQ P+G+
Sbjct: 189  LLLSFPFGQLSFGFTQEPQQGSVYLDYLALQYNVSFPQAAQWTFSGQNASLRALQAPLGQ 248

Query: 794  SYSCRNASIILSTAFHLDLLSLKLQAAQLPPTGNFGPSFSCPSDQXXXXXXXXXXXXXXX 973
            S+SCRNASI+L+ A  LDLL LKLQAAQLPP+G FGPSFSCPS+                
Sbjct: 249  SFSCRNASILLTPALRLDLLHLKLQAAQLPPSGAFGPSFSCPSEHFNLLPLIVGVISLGL 308

Query: 974  XXXXXXXXCIIRRRPPAYQPL 1036
                    CIIRRRPP YQPL
Sbjct: 309  LALALVTFCIIRRRPPTYQPL 329


>ref|XP_546594.1| PREDICTED: similar to CD68 antigen isoform 1 [Canis familiaris].
          Length = 337

 Score =  271 bits (693), Expect = 1e-72
 Identities = 131/209 (62%), Positives = 156/209 (74%), Gaps = 8/209 (3%)
 Frame = +2

Query: 434  QEAIGDYTWTNGSQPCVQLQAQIQIRVLYPTQGGGE--------AWGISVLNPNKTKALG 589
            Q+AIGDYTWT GSQPC +LQA+IQI V+YPTQ GG+        AWGISVLNPN TK  G
Sbjct: 129  QDAIGDYTWTTGSQPCARLQARIQIGVVYPTQAGGQVEPPVGAGAWGISVLNPNSTKPWG 188

Query: 590  GCEGAHPHVRLSFPYGQLTFGFKQQPQESTVYLNYMAVEYNVSFPRAAQWTFSVQNSSLR 769
             C+GA PH+ LSFP+GQL+FGF Q+PQ+ +VYL+Y+A++YNVSFP+AAQWTFS QN+SLR
Sbjct: 189  DCDGARPHLLLSFPFGQLSFGFTQEPQQGSVYLDYLALQYNVSFPQAAQWTFSGQNASLR 248

Query: 770  DLQTPVGRSYSCRNASIILSTAFHLDLLSLKLQAAQLPPTGNFGPSFSCPSDQXXXXXXX 949
             LQ P+G+S+SCRNASI+L+ A  LDLL LKLQAAQLPP+G FGPSFSCPS+        
Sbjct: 249  ALQAPLGQSFSCRNASILLTPALRLDLLHLKLQAAQLPPSGAFGPSFSCPSEHFNLLPLI 308

Query: 950  XXXXXXXXXXXXXXXXCIIRRRPPAYQPL 1036
                            CIIRRRPP YQPL
Sbjct: 309  VGVISLGLLALALVTFCIIRRRPPTYQPL 337


>ref|XP_534193.2| PREDICTED: similar to Lysosome-associated membrane glycoprotein 1
           precursor (LAMP-1) (CD107a antigen) isoform 1 [Canis
           familiaris].
          Length = 413

 Score = 59.7 bits (143), Expect = 6e-09
 Identities = 44/165 (26%), Positives = 73/165 (44%), Gaps = 2/165 (1%)
 Frame = +2

Query: 440 AIGDYTWTNGSQPCVQLQAQIQIRVLYPTQGGGEAWGISVLNPNKTKALGGCEGAHPHVR 619
           ++  Y  +  +  C+     +Q+ V Y  +       +  +NPNKT A G C      + 
Sbjct: 214 SVHKYNVSGANGTCLLASMGLQLNVTYKKKDNTTVVKVVSINPNKTTAGGSCGAQLVTLE 273

Query: 620 L-SFPYGQLTFGFKQQPQESTVYLNYMAVEYNVSFPRAAQWTFSVQNSSLRDLQTPVGRS 796
           L S     L F F      S  +L    ++ N++ P A   TF   N+SLR LQ  +G S
Sbjct: 274 LRSESVTLLAFQFGMNASTSRFFLQ--GIQLNMTLPDARDPTFKAGNNSLRALQATIGNS 331

Query: 797 YSCR-NASIILSTAFHLDLLSLKLQAAQLPPTGNFGPSFSCPSDQ 928
           Y C     + ++ AF ++++ + +QA Q+     FG    C  D+
Sbjct: 332 YKCNAGEHVQVTEAFSVNIIKVWVQAFQV-QGDKFGSVEECQLDE 375


>ref|XP_856022.1| PREDICTED: similar to Lysosome-associated membrane glycoprotein 1
           precursor (LAMP-1) (CD107a antigen) isoform 2 [Canis
           familiaris].
          Length = 374

 Score = 59.7 bits (143), Expect = 6e-09
 Identities = 44/165 (26%), Positives = 73/165 (44%), Gaps = 2/165 (1%)
 Frame = +2

Query: 440 AIGDYTWTNGSQPCVQLQAQIQIRVLYPTQGGGEAWGISVLNPNKTKALGGCEGAHPHVR 619
           ++  Y  +  +  C+     +Q+ V Y  +       +  +NPNKT A G C      + 
Sbjct: 175 SVHKYNVSGANGTCLLASMGLQLNVTYKKKDNTTVVKVVSINPNKTTAGGSCGAQLVTLE 234

Query: 620 L-SFPYGQLTFGFKQQPQESTVYLNYMAVEYNVSFPRAAQWTFSVQNSSLRDLQTPVGRS 796
           L S     L F F      S  +L    ++ N++ P A   TF   N+SLR LQ  +G S
Sbjct: 235 LRSESVTLLAFQFGMNASTSRFFLQ--GIQLNMTLPDARDPTFKAGNNSLRALQATIGNS 292

Query: 797 YSCR-NASIILSTAFHLDLLSLKLQAAQLPPTGNFGPSFSCPSDQ 928
           Y C     + ++ AF ++++ + +QA Q+     FG    C  D+
Sbjct: 293 YKCNAGEHVQVTEAFSVNIIKVWVQAFQV-QGDKFGSVEECQLDE 336


>ref|XP_864590.1| PREDICTED: similar to Lysosome-associated membrane glycoprotein 2
           precursor (LAMP-2) (CD107b antigen) isoform 4 [Canis
           familiaris].
          Length = 411

 Score = 49.3 bits (116), Expect = 8e-06
 Identities = 40/165 (24%), Positives = 71/165 (43%), Gaps = 4/165 (2%)
 Frame = +2

Query: 443 IGDYTWTNGSQPCVQLQAQIQIRVLYPTQGGGEAWGISVLNPNKTKALGGCEGAHPHVRL 622
           +G Y+  N +  C+     +Q+ + +      +   +  +NPN T   G C+     +RL
Sbjct: 221 VGSYSVNNSNGTCLLATMGLQLNITH-----NKVASVININPNTTDFTGSCQPQTALLRL 275

Query: 623 S---FPYGQLTFGFKQQPQESTVYLNYMAVEYNVSFPRAAQWTFSVQNSSLRDLQTPVGR 793
           +     Y    F  K    E+  YL     E NVS        FS+ N++L     P+G 
Sbjct: 276 NSSNIKYLDFVFAVKN---ENRFYLK----EVNVSMYLVNGSVFSIANNNLSYWDAPLGS 328

Query: 794 SYSC-RNASIILSTAFHLDLLSLKLQAAQLPPTGNFGPSFSCPSD 925
           SY C +  ++ +S AF ++   L++Q   +   G +  +  C +D
Sbjct: 329 SYMCNKEQTVSVSGAFQINTFDLRVQPFNV-MEGKYSTAQDCSAD 372


>ref|XP_851885.1| PREDICTED: similar to lysosomal-associated membrane protein 2
           precursor isoform 2 [Canis familiaris].
          Length = 412

 Score = 49.3 bits (116), Expect = 8e-06
 Identities = 40/165 (24%), Positives = 71/165 (43%), Gaps = 4/165 (2%)
 Frame = +2

Query: 443 IGDYTWTNGSQPCVQLQAQIQIRVLYPTQGGGEAWGISVLNPNKTKALGGCEGAHPHVRL 622
           +G Y+  N +  C+     +Q+ + +      +   +  +NPN T   G C+     +RL
Sbjct: 221 VGSYSVNNSNGTCLLATMGLQLNITH-----NKVASVININPNTTDFTGSCQPQTALLRL 275

Query: 623 S---FPYGQLTFGFKQQPQESTVYLNYMAVEYNVSFPRAAQWTFSVQNSSLRDLQTPVGR 793
           +     Y    F  K    E+  YL     E NVS        FS+ N++L     P+G 
Sbjct: 276 NSSNIKYLDFVFAVKN---ENRFYLK----EVNVSMYLVNGSVFSIANNNLSYWDAPLGS 328

Query: 794 SYSC-RNASIILSTAFHLDLLSLKLQAAQLPPTGNFGPSFSCPSD 925
           SY C +  ++ +S AF ++   L++Q   +   G +  +  C +D
Sbjct: 329 SYMCNKEQTVSVSGAFQINTFDLRVQPFNV-MEGKYSTAEECSAD 372


>ref|XP_848889.1| PREDICTED: similar to lysosomal-associated membrane protein 3
           [Canis familiaris].
          Length = 479

 Score = 49.3 bits (116), Expect = 8e-06
 Identities = 44/161 (27%), Positives = 73/161 (45%), Gaps = 1/161 (0%)
 Frame = +2

Query: 446 GDYTWTNGSQPCVQLQAQIQIRVLYPTQGGGEAWGISVLNPNKTKALGGCEGAHPHVRLS 625
           G Y   NGS+ C++ +  I++ V   T+          ++PN T+  G C     ++ L+
Sbjct: 289 GIYQVLNGSRLCIKAEMGIELMV-QDTKSVFSPQRYFNIDPNATQTSGNCGSQKSNLLLN 347

Query: 626 FPYGQLTFGFKQQPQESTVYLNYMAVEYNVSFPRAAQWTFSVQNSSLRDLQTPVGRSYSC 805
           F  G +   F +   E++ Y+N +     VS P   +  +    SS+   +T VG S+ C
Sbjct: 348 FQGGFVNLTFLK--DENSYYINEVGAYLAVSNP---EKIYQGMKSSVVMFETGVGHSFKC 402

Query: 806 -RNASIILSTAFHLDLLSLKLQAAQLPPTGNFGPSFSCPSD 925
               SI LST   L  ++++ QA       +FG    C SD
Sbjct: 403 VSEQSIQLSTHLQLKTMNVQFQAFDF-EDDHFGNVDECSSD 442


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 47,740,527
Number of extensions: 1265391
Number of successful extensions: 5270
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 5249
Number of HSP's successfully gapped: 7
Length of query: 416
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 311
Effective length of database: 15,374,224
Effective search space: 4781383664
Effective search space used: 4781383664
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002810
         (1248 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001035148.1| macrosialin isoform B [Homo sapiens].             288   6e-78
Alignment   gi|NP_001242.2| macrosialin isoform A [Homo sapiens].                288   6e-78
Alignment   gi|NP_005552.3| lysosome-associated membrane glycoprotein 1 pre...    57   3e-08
Alignment   gi|NP_001116078.1| lysosome-associated membrane glycoprotein 2 ...    50   3e-06
Alignment   gi|NP_002285.1| lysosome-associated membrane glycoprotein 2 iso...    50   3e-06
Alignment   gi|NP_054701.1| lysosome-associated membrane glycoprotein 2 iso...    49   7e-06

>ref|NP_001035148.1| macrosialin isoform B [Homo sapiens].
          Length = 327

 Score =  288 bits (738), Expect = 6e-78
 Identities = 149/241 (61%), Positives = 162/241 (67%)
 Frame = +2

Query: 314  SHGNATVHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQEAIGDYTWTNGSQPCVQLQ 493
            SHGNATVH                                +E IGDYTWTNGSQPCV LQ
Sbjct: 88   SHGNATVHPTSNSTATSPGFTSSAHPEPPPPSPSPSPTS-KETIGDYTWTNGSQPCVHLQ 146

Query: 494  AQIQIRVLYPTQGGGEAWGISVLNPNKTKALGGCEGAHPHVRLSFPYGQLTFGFKQQPQE 673
            AQIQIRV+Y TQGGGEAWGISVLNPNKTK  G CEGAHPH+ LSFPYG L+FGF Q  Q+
Sbjct: 147  AQIQIRVMYTTQGGGEAWGISVLNPNKTKVQGSCEGAHPHLLLSFPYGHLSFGFMQDLQQ 206

Query: 674  STVYLNYMAVEYNVSFPRAAQWTFSVQNSSLRDLQTPVGRSYSCRNASIILSTAFHLDLL 853
              VYL+YMAVEYNVSFP AAQWTFS QN+SLRDLQ P+G+S+SC N+SIILS A HLDLL
Sbjct: 207  KVVYLSYMAVEYNVSFPHAAQWTFSAQNASLRDLQAPLGQSFSCSNSSIILSPAVHLDLL 266

Query: 854  SLKLQAAQLPPTGNFGPSFSCPSDQXXXXXXXXXXXXXXXXXXXXXXXCIIRRRPPAYQP 1033
            SL+LQAAQLP TG FG SFSCPSD+                       CIIRRRP AYQ 
Sbjct: 267  SLRLQAAQLPHTGVFGQSFSCPSDRSILLPLIIGLILLGLLALVLIAFCIIRRRPSAYQA 326

Query: 1034 L 1036
            L
Sbjct: 327  L 327


>ref|NP_001242.2| macrosialin isoform A [Homo sapiens].
          Length = 354

 Score =  288 bits (738), Expect = 6e-78
 Identities = 149/241 (61%), Positives = 162/241 (67%)
 Frame = +2

Query: 314  SHGNATVHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQEAIGDYTWTNGSQPCVQLQ 493
            SHGNATVH                                +E IGDYTWTNGSQPCV LQ
Sbjct: 115  SHGNATVHPTSNSTATSPGFTSSAHPEPPPPSPSPSPTS-KETIGDYTWTNGSQPCVHLQ 173

Query: 494  AQIQIRVLYPTQGGGEAWGISVLNPNKTKALGGCEGAHPHVRLSFPYGQLTFGFKQQPQE 673
            AQIQIRV+Y TQGGGEAWGISVLNPNKTK  G CEGAHPH+ LSFPYG L+FGF Q  Q+
Sbjct: 174  AQIQIRVMYTTQGGGEAWGISVLNPNKTKVQGSCEGAHPHLLLSFPYGHLSFGFMQDLQQ 233

Query: 674  STVYLNYMAVEYNVSFPRAAQWTFSVQNSSLRDLQTPVGRSYSCRNASIILSTAFHLDLL 853
              VYL+YMAVEYNVSFP AAQWTFS QN+SLRDLQ P+G+S+SC N+SIILS A HLDLL
Sbjct: 234  KVVYLSYMAVEYNVSFPHAAQWTFSAQNASLRDLQAPLGQSFSCSNSSIILSPAVHLDLL 293

Query: 854  SLKLQAAQLPPTGNFGPSFSCPSDQXXXXXXXXXXXXXXXXXXXXXXXCIIRRRPPAYQP 1033
            SL+LQAAQLP TG FG SFSCPSD+                       CIIRRRP AYQ 
Sbjct: 294  SLRLQAAQLPHTGVFGQSFSCPSDRSILLPLIIGLILLGLLALVLIAFCIIRRRPSAYQA 353

Query: 1034 L 1036
            L
Sbjct: 354  L 354


>ref|NP_005552.3| lysosome-associated membrane glycoprotein 1 precursor [Homo
           sapiens].
          Length = 417

 Score = 57.4 bits (137), Expect = 3e-08
 Identities = 47/159 (29%), Positives = 69/159 (43%), Gaps = 3/159 (1%)
 Frame = +2

Query: 461 TNGSQPCVQLQAQIQIRVLYPTQGGGEAWGISVLNPNKTKALGGCEGAHPHVRLSFPYGQ 640
           TNG+  C+     +Q+ + Y  +       +  +NPNKT A G C GAH         G 
Sbjct: 227 TNGT--CLLASMGLQLNLTYERKDNTTVTRLLNINPNKTSASGSC-GAHLVTLELHSEGT 283

Query: 641 --LTFGFKQQPQESTVYLNYMAVEYNVSFPRAAQWTFSVQNSSLRDLQTPVGRSYSCR-N 811
             L F F      S  +L    ++ N   P A    F   N SLR LQ  VG SY C   
Sbjct: 284 TVLLFQFGMNASSSRFFLQ--GIQLNTILPDARDPAFKAANGSLRALQATVGNSYKCNAE 341

Query: 812 ASIILSTAFHLDLLSLKLQAAQLPPTGNFGPSFSCPSDQ 928
             + ++ AF +++  + +QA ++   G FG    C  D+
Sbjct: 342 EHVRVTKAFSVNIFKVWVQAFKV-EGGQFGSVEECLLDE 379


>ref|NP_001116078.1| lysosome-associated membrane glycoprotein 2 isoform C precursor
           [Homo sapiens].
          Length = 411

 Score = 50.4 bits (119), Expect = 3e-06
 Identities = 42/164 (25%), Positives = 72/164 (43%), Gaps = 4/164 (2%)
 Frame = +2

Query: 446 GDYTWTNGSQPCVQLQAQIQIRVLYPTQGGGEAWGISVLNPNKTKALGGCEGAHPHVRLS 625
           G Y+  NG+  C+     +Q+ +   TQ   +   +  +NPN T + G C      +RL+
Sbjct: 221 GTYSVNNGNDTCLLATMGLQLNI---TQD--KVASVININPNTTHSTGSCRSHTALLRLN 275

Query: 626 ---FPYGQLTFGFKQQPQESTVYLNYMAVEYNVSFPRAAQWTFSVQNSSLRDLQTPVGRS 796
                Y    F  K    E+  YL     E N+S        FS+ N++L     P+G S
Sbjct: 276 SSTIKYLDFVFAVKN---ENRFYLK----EVNISMYLVNGSVFSIANNNLSYWDAPLGSS 328

Query: 797 YSC-RNASIILSTAFHLDLLSLKLQAAQLPPTGNFGPSFSCPSD 925
           Y C +  ++ +S AF ++   L++Q   +   G +  +  C +D
Sbjct: 329 YMCNKEQTVSVSGAFQINTFDLRVQPFNV-TQGKYSTAEECSAD 371


>ref|NP_002285.1| lysosome-associated membrane glycoprotein 2 isoform A precursor
           [Homo sapiens].
          Length = 410

 Score = 50.4 bits (119), Expect = 3e-06
 Identities = 42/164 (25%), Positives = 72/164 (43%), Gaps = 4/164 (2%)
 Frame = +2

Query: 446 GDYTWTNGSQPCVQLQAQIQIRVLYPTQGGGEAWGISVLNPNKTKALGGCEGAHPHVRLS 625
           G Y+  NG+  C+     +Q+ +   TQ   +   +  +NPN T + G C      +RL+
Sbjct: 221 GTYSVNNGNDTCLLATMGLQLNI---TQD--KVASVININPNTTHSTGSCRSHTALLRLN 275

Query: 626 ---FPYGQLTFGFKQQPQESTVYLNYMAVEYNVSFPRAAQWTFSVQNSSLRDLQTPVGRS 796
                Y    F  K    E+  YL     E N+S        FS+ N++L     P+G S
Sbjct: 276 SSTIKYLDFVFAVKN---ENRFYLK----EVNISMYLVNGSVFSIANNNLSYWDAPLGSS 328

Query: 797 YSC-RNASIILSTAFHLDLLSLKLQAAQLPPTGNFGPSFSCPSD 925
           Y C +  ++ +S AF ++   L++Q   +   G +  +  C +D
Sbjct: 329 YMCNKEQTVSVSGAFQINTFDLRVQPFNV-TQGKYSTAQDCSAD 371


>ref|NP_054701.1| lysosome-associated membrane glycoprotein 2 isoform B precursor
           [Homo sapiens].
          Length = 410

 Score = 49.3 bits (116), Expect = 7e-06
 Identities = 42/164 (25%), Positives = 71/164 (43%), Gaps = 4/164 (2%)
 Frame = +2

Query: 446 GDYTWTNGSQPCVQLQAQIQIRVLYPTQGGGEAWGISVLNPNKTKALGGCEGAHPHVRLS 625
           G Y+  NG+  C+     +Q+ +   TQ   +   +  +NPN T + G C      +RL+
Sbjct: 221 GTYSVNNGNDTCLLATMGLQLNI---TQD--KVASVININPNTTHSTGSCRSHTALLRLN 275

Query: 626 ---FPYGQLTFGFKQQPQESTVYLNYMAVEYNVSFPRAAQWTFSVQNSSLRDLQTPVGRS 796
                Y    F  K    E+  YL     E N+S        FS+ N++L     P+G S
Sbjct: 276 SSTIKYLDFVFAVKN---ENRFYLK----EVNISMYLVNGSVFSIANNNLSYWDAPLGSS 328

Query: 797 YSC-RNASIILSTAFHLDLLSLKLQAAQLPPTGNFGPSFSCPSD 925
           Y C +  ++ +S AF ++   L++Q   +   G +  +  C  D
Sbjct: 329 YMCNKEQTVSVSGAFQINTFDLRVQPFNV-TQGKYSTAQECSLD 371


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 46,779,183
Number of extensions: 1243540
Number of successful extensions: 4961
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 4946
Number of HSP's successfully gapped: 6
Length of query: 416
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 311
Effective length of database: 14,835,944
Effective search space: 4613978584
Effective search space used: 4613978584
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002810
         (1248 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_033983.1| macrosialin [Mus musculus].                          265   4e-71
Alignment   gi|NP_034814.2| lysosome-associated membrane glycoprotein 1 [Mu...    52   1e-06

>ref|NP_033983.1| macrosialin [Mus musculus].
          Length = 335

 Score =  265 bits (678), Expect = 4e-71
 Identities = 134/210 (63%), Positives = 150/210 (71%), Gaps = 11/210 (5%)
 Frame = +2

Query: 440  AIGDYTWTNGSQPCVQLQAQIQIRVLYPTQGGGE---------AWGISVLNPNKTKALGG 592
            A+G+YTW NGSQPCVQLQAQIQIR+LYP QGG +         AWGISVLNPNKTK  GG
Sbjct: 126  ALGNYTWANGSQPCVQLQAQIQIRILYPIQGGRKVKLKWGLKRAWGISVLNPNKTKVQGG 185

Query: 593  CEGAHPHVRLSFPYGQLTFGFKQQPQES--TVYLNYMAVEYNVSFPRAAQWTFSVQNSSL 766
            C+G HPH+ LSFPYGQLTFGFKQ   +S  TVYL+YMAVEYNVSFP+AAQWTF  QNSSL
Sbjct: 186  CDGTHPHLSLSFPYGQLTFGFKQDLHQSPSTVYLDYMAVEYNVSFPQAAQWTFMAQNSSL 245

Query: 767  RDLQTPVGRSYSCRNASIILSTAFHLDLLSLKLQAAQLPPTGNFGPSFSCPSDQXXXXXX 946
            R+LQ P+G+S+ C NASI+LS A HLDLLSL+LQAAQLP  G+FGP FSC  DQ      
Sbjct: 246  RELQAPLGQSFCCGNASIVLSPAVHLDLLSLRLQAAQLPDKGHFGPCFSCNRDQSLLLPL 305

Query: 947  XXXXXXXXXXXXXXXXXCIIRRRPPAYQPL 1036
                             CI RRR   YQPL
Sbjct: 306  IIGLVLLGLLTLVLIAFCITRRRQSTYQPL 335


>ref|NP_034814.2| lysosome-associated membrane glycoprotein 1 [Mus musculus].
          Length = 406

 Score = 51.6 bits (122), Expect = 1e-06
 Identities = 41/162 (25%), Positives = 68/162 (41%), Gaps = 1/162 (0%)
 Frame = +2

Query: 443 IGDYTWTNGSQPCVQLQAQIQIRVLYPTQGGGEAWGISVLNPNKTKALGGCEGAHPHVRL 622
           +  Y  T  +  C+     +Q+ + Y  +          ++PN T + G C      +++
Sbjct: 210 VSKYNVTGNNGTCLLASMALQLNITYLKKDNKTVTRAFNISPNDTSS-GSCGINLVTLKV 268

Query: 623 SFPYGQLTFGFKQQPQESTVYLNYMAVEYNVSFPRAAQWTFSVQNSSLRDLQTPVGRSYS 802
                 L   F      S  +L    V  N++ P A   TFS+ N SL+ LQ  VG SY 
Sbjct: 269 ENKNRALELQFGMNASSSLFFLQ--GVRLNMTLPDALVPTFSISNHSLKALQATVGNSYK 326

Query: 803 CRNAS-IILSTAFHLDLLSLKLQAAQLPPTGNFGPSFSCPSD 925
           C     I +S    L++ S+++QA ++  +  FG    C  D
Sbjct: 327 CNTEEHIFVSKMLSLNVFSVQVQAFKV-DSDRFGSVEECVQD 367


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 39,498,877
Number of extensions: 1035104
Number of successful extensions: 4025
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4005
Number of HSP's successfully gapped: 2
Length of query: 416
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 312
Effective length of database: 12,493,815
Effective search space: 3898070280
Effective search space used: 3898070280
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002810
         (1248 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_003131995.1| PREDICTED: macrosialin-like [Sus scrofa].         368   e-102
Alignment   gi|XP_003361281.1| PREDICTED: macrosialin-like [Sus scrofa].         332   3e-91
Alignment   gi|XP_003128951.1| PREDICTED: macrosialin-like isoform 2 [Sus s...   295   5e-80
Alignment   gi|XP_003128950.1| PREDICTED: macrosialin-like isoform 1 [Sus s...   295   5e-80
Alignment   gi|NP_001011507.1| lysosome-associated membrane glycoprotein 1 ...    63   4e-10
Alignment   gi|XP_001926493.1| PREDICTED: lysosome-associated membrane glyc...    50   3e-06
Alignment   gi|XP_003360473.1| PREDICTED: lysosome-associated membrane glyc...    49   6e-06

>ref|XP_003131995.1| PREDICTED: macrosialin-like [Sus scrofa].
          Length = 291

 Score =  368 bits (944), Expect = e-102
 Identities = 186/241 (77%), Positives = 186/241 (77%)
 Frame = +2

Query: 314  SHGNATVHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQEAIGDYTWTNGSQPCVQLQ 493
            SHGNATVH                                QEAIGDYTWTNGSQPCVQLQ
Sbjct: 51   SHGNATVHPTSSSTATSPGSSTRPPHPGPPPPSPSPSPGSQEAIGDYTWTNGSQPCVQLQ 110

Query: 494  AQIQIRVLYPTQGGGEAWGISVLNPNKTKALGGCEGAHPHVRLSFPYGQLTFGFKQQPQE 673
            AQIQIRVLYPTQGGGEAWGISVLNPNKTKALGGCEGAHPHVRLSFPYGQLTFGFKQQPQE
Sbjct: 111  AQIQIRVLYPTQGGGEAWGISVLNPNKTKALGGCEGAHPHVRLSFPYGQLTFGFKQQPQE 170

Query: 674  STVYLNYMAVEYNVSFPRAAQWTFSVQNSSLRDLQTPVGRSYSCRNASIILSTAFHLDLL 853
            STVYLNYMAVEYNVSFPRAAQWTFSVQNSSLRDLQTPVGRSYSCRNASIILSTAFHLDLL
Sbjct: 171  STVYLNYMAVEYNVSFPRAAQWTFSVQNSSLRDLQTPVGRSYSCRNASIILSTAFHLDLL 230

Query: 854  SLKLQAAQLPPTGNFGPSFSCPSDQXXXXXXXXXXXXXXXXXXXXXXXCIIRRRPPAYQP 1033
            SLKLQAAQLPPTGNFGPSFSCPSDQ                       CIIRRRPPAYQP
Sbjct: 231  SLKLQAAQLPPTGNFGPSFSCPSDQTILLPLIIGLIFLGLLILVLVTFCIIRRRPPAYQP 290

Query: 1034 L 1036
            L
Sbjct: 291  L 291


>ref|XP_003361281.1| PREDICTED: macrosialin-like [Sus scrofa].
          Length = 282

 Score =  332 bits (851), Expect = 3e-91
 Identities = 167/201 (83%), Positives = 167/201 (83%)
 Frame = +2

Query: 434  QEAIGDYTWTNGSQPCVQLQAQIQIRVLYPTQGGGEAWGISVLNPNKTKALGGCEGAHPH 613
            QEAIGDYTWTNGSQPCVQLQAQIQIRVLYPTQGGGEAWGISVLNPNKTKALGGCEGAHPH
Sbjct: 93   QEAIGDYTWTNGSQPCVQLQAQIQIRVLYPTQGGGEAWGISVLNPNKTKALGGCEGAHPH 152

Query: 614  VRLSFPYGQLTFGFKQQPQESTVYLNYMAVEYNVSFPRAAQWTFSVQNSSLRDLQTPVGR 793
            VRLSFPYGQLTFGFKQQPQESTVYLNYMAVEYNVSFPRAA           RDLQTPVGR
Sbjct: 153  VRLSFPYGQLTFGFKQQPQESTVYLNYMAVEYNVSFPRAA-----------RDLQTPVGR 201

Query: 794  SYSCRNASIILSTAFHLDLLSLKLQAAQLPPTGNFGPSFSCPSDQXXXXXXXXXXXXXXX 973
            SYSCRNASIILSTAFHLDLLSLKLQAAQLPPTGNFGPSFSCPSDQ               
Sbjct: 202  SYSCRNASIILSTAFHLDLLSLKLQAAQLPPTGNFGPSFSCPSDQTILLPLIIGLIFLGL 261

Query: 974  XXXXXXXXCIIRRRPPAYQPL 1036
                    CIIRRRPPAYQPL
Sbjct: 262  LILVLVTFCIIRRRPPAYQPL 282


>ref|XP_003128951.1| PREDICTED: macrosialin-like isoform 2 [Sus scrofa].
          Length = 320

 Score =  295 bits (754), Expect = 5e-80
 Identities = 145/201 (72%), Positives = 159/201 (79%)
 Frame = +2

Query: 434  QEAIGDYTWTNGSQPCVQLQAQIQIRVLYPTQGGGEAWGISVLNPNKTKALGGCEGAHPH 613
            +E  GDYTWTNGSQPCV LQAQIQIRVLYPTQGGG+AWGISV+NPNKTK  GGCEGAH H
Sbjct: 120  KEVKGDYTWTNGSQPCVHLQAQIQIRVLYPTQGGGKAWGISVVNPNKTKVQGGCEGAHAH 179

Query: 614  VRLSFPYGQLTFGFKQQPQESTVYLNYMAVEYNVSFPRAAQWTFSVQNSSLRDLQTPVGR 793
            + LSFPYGQL+FGFKQ+P +STVYLNYMA+E+NVSFP A QWTFSVQNSSLR+LQTP+G+
Sbjct: 180  LLLSFPYGQLSFGFKQEPLKSTVYLNYMAIEHNVSFPGAVQWTFSVQNSSLRELQTPLGQ 239

Query: 794  SYSCRNASIILSTAFHLDLLSLKLQAAQLPPTGNFGPSFSCPSDQXXXXXXXXXXXXXXX 973
            SYSCRNASIILS AFHLDLLSLKLQAAQLPPTG FGP+F CPSD+               
Sbjct: 240  SYSCRNASIILSPAFHLDLLSLKLQAAQLPPTGAFGPNFFCPSDKSNMRPLIISLILIGI 299

Query: 974  XXXXXXXXCIIRRRPPAYQPL 1036
                      IRRR   YQ L
Sbjct: 300  IISMFVTFPFIRRRRRIYQLL 320


>ref|XP_003128950.1| PREDICTED: macrosialin-like isoform 1 [Sus scrofa].
          Length = 400

 Score =  295 bits (754), Expect = 5e-80
 Identities = 145/201 (72%), Positives = 159/201 (79%)
 Frame = +2

Query: 434  QEAIGDYTWTNGSQPCVQLQAQIQIRVLYPTQGGGEAWGISVLNPNKTKALGGCEGAHPH 613
            +E  GDYTWTNGSQPCV LQAQIQIRVLYPTQGGG+AWGISV+NPNKTK  GGCEGAH H
Sbjct: 200  KEVKGDYTWTNGSQPCVHLQAQIQIRVLYPTQGGGKAWGISVVNPNKTKVQGGCEGAHAH 259

Query: 614  VRLSFPYGQLTFGFKQQPQESTVYLNYMAVEYNVSFPRAAQWTFSVQNSSLRDLQTPVGR 793
            + LSFPYGQL+FGFKQ+P +STVYLNYMA+E+NVSFP A QWTFSVQNSSLR+LQTP+G+
Sbjct: 260  LLLSFPYGQLSFGFKQEPLKSTVYLNYMAIEHNVSFPGAVQWTFSVQNSSLRELQTPLGQ 319

Query: 794  SYSCRNASIILSTAFHLDLLSLKLQAAQLPPTGNFGPSFSCPSDQXXXXXXXXXXXXXXX 973
            SYSCRNASIILS AFHLDLLSLKLQAAQLPPTG FGP+F CPSD+               
Sbjct: 320  SYSCRNASIILSPAFHLDLLSLKLQAAQLPPTGAFGPNFFCPSDKSNMRPLIISLILIGI 379

Query: 974  XXXXXXXXCIIRRRPPAYQPL 1036
                      IRRR   YQ L
Sbjct: 380  IISMFVTFPFIRRRRRIYQLL 400



 Score = 50.8 bits (120), Expect = 2e-06
 Identities = 29/63 (46%), Positives = 30/63 (47%)
 Frame = +2

Query: 2   AEGLGLREQAAGTHTELSWILSAGCSDMTXXXXXXXXXXXXXXXXXXXVDSPHKKSATLL 181
           AEG GL EQ AG  TE  W L  GCS M                     + PHKKSATLL
Sbjct: 27  AEGKGLIEQVAGRDTEPRWTLGGGCSVMRLAVIFSGALLGLLAAQDTGNECPHKKSATLL 86

Query: 182 PSF 190
           PSF
Sbjct: 87  PSF 89


>ref|NP_001011507.1| lysosome-associated membrane glycoprotein 1 [Sus scrofa].
          Length = 413

 Score = 62.8 bits (151), Expect = 4e-10
 Identities = 47/164 (28%), Positives = 75/164 (45%), Gaps = 2/164 (1%)
 Frame = +2

Query: 443 IGDYTWTNGSQPCVQLQAQIQIRVLYPTQGGGEAWGISVLNPNKTKALGGCEGAHPHVRL 622
           +  Y  +  +  C+     +Q+ V Y T+          +NPNKT   G C      + L
Sbjct: 215 VSRYNVSGANGTCLLASMGLQLNVTYRTKDNTTVTRGLNINPNKTTFGGSCSAQLVTLEL 274

Query: 623 SFPYGQL-TFGFKQQPQESTVYLNYMAVEYNVSFPRAAQWTFSVQNSSLRDLQTPVGRSY 799
                +L    F      S V+L    V+ N++ P A   +FS  NSSLR LQ   G SY
Sbjct: 275 QGESLRLLALQFALNTSSSRVFLQ--GVQLNMTLPDARDPSFSAANSSLRALQATAGNSY 332

Query: 800 SCRNAS-IILSTAFHLDLLSLKLQAAQLPPTGNFGPSFSCPSDQ 928
            CR+   + ++ AF L++  +++QA ++     FGP+  C  D+
Sbjct: 333 KCRSEQRLQVTEAFALNVFQVRVQAFRV-DGDKFGPAEECQLDE 375


>ref|XP_001926493.1| PREDICTED: lysosome-associated membrane glycoprotein 2 isoform 1
           [Sus scrofa].
          Length = 411

 Score = 50.1 bits (118), Expect = 3e-06
 Identities = 43/164 (26%), Positives = 73/164 (44%), Gaps = 4/164 (2%)
 Frame = +2

Query: 446 GDYTWTNGSQPCVQLQAQIQIRVLYPTQGGGEAWGISVLNPNKTKALGGCEGAHPHVRLS 625
           G Y+ T+ +  C+     +Q+ +   TQ   +   +  +NPN T A G C      +RLS
Sbjct: 222 GSYSVTSSNGTCLLANMGLQLNI---TQD--KVASVININPNTTNATGNCHSKTALLRLS 276

Query: 626 ---FPYGQLTFGFKQQPQESTVYLNYMAVEYNVSFPRAAQWTFSVQNSSLRDLQTPVGRS 796
                Y    F  K    ++  YL     E NVS        FS+ N++L     P+G S
Sbjct: 277 GSNIKYLDFVFAVKN---DNRFYLK----EVNVSVYLVNGSVFSIANNNLSYWDAPLGSS 329

Query: 797 YSC-RNASIILSTAFHLDLLSLKLQAAQLPPTGNFGPSFSCPSD 925
           Y C +  ++ +S AF ++  +L++Q   +   G +  +  C +D
Sbjct: 330 YMCNKEQTVSVSGAFQINTFNLRVQPFSV-MEGKYSTAQDCSAD 372


>ref|XP_003360473.1| PREDICTED: lysosome-associated membrane glycoprotein 2 [Sus
           scrofa].
          Length = 411

 Score = 48.9 bits (115), Expect = 6e-06
 Identities = 43/164 (26%), Positives = 72/164 (43%), Gaps = 4/164 (2%)
 Frame = +2

Query: 446 GDYTWTNGSQPCVQLQAQIQIRVLYPTQGGGEAWGISVLNPNKTKALGGCEGAHPHVRLS 625
           G Y+ T+ +  C+     +Q+ +   TQ   +   +  +NPN T A G C      +RLS
Sbjct: 222 GSYSVTSSNGTCLLANMGLQLNI---TQD--KVASVININPNTTNATGNCHSKTALLRLS 276

Query: 626 ---FPYGQLTFGFKQQPQESTVYLNYMAVEYNVSFPRAAQWTFSVQNSSLRDLQTPVGRS 796
                Y    F  K    ++  YL     E NVS        FS+ N++L     P+G S
Sbjct: 277 GSNIKYLDFVFAVKN---DNRFYLK----EVNVSVYLVNGSVFSIANNNLSYWDAPLGSS 329

Query: 797 YSC-RNASIILSTAFHLDLLSLKLQAAQLPPTGNFGPSFSCPSD 925
           Y C +  ++ +S AF ++  +L++Q   +   G +  +  C  D
Sbjct: 330 YMCNKEQTVSVSGAFQINTFNLRVQPFSV-MEGKYSTAQECSLD 372


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 29,553,861
Number of extensions: 791417
Number of successful extensions: 3100
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 3090
Number of HSP's successfully gapped: 8
Length of query: 416
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 315
Effective length of database: 8,829,335
Effective search space: 2781240525
Effective search space used: 2781240525
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002810
         (1248 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr12                                                         656   0.0  
gb|GL893964.1| Sus scrofa unplaced genomic scaffold chrU_scaffol...   640   0.0  
Sscrofa_Chr08                                                         264   1e-67
Sscrofa_Chr13                                                          86   5e-14

>Sscrofa_Chr12 
||          Length = 63588571

 Score =  656 bits (331), Expect = 0.0
 Identities = 331/331 (100%)
 Strand = Plus / Minus

                                                                            
Query: 906      gtttctcttgtcccagtgaccaaaccatcctgctgcctctcatcattggactgattttcc 965
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55297317 gtttctcttgtcccagtgaccaaaccatcctgctgcctctcatcattggactgattttcc 55297258

                                                                            
Query: 966      ttggcctcctcatcctggtgcttgttaccttctgcatcatccggagacgcccacccgcct 1025
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55297257 ttggcctcctcatcctggtgcttgttaccttctgcatcatccggagacgcccacccgcct 55297198

                                                                            
Query: 1026     accagcctctgtgagcatctgttccaacacccagggcaccagagggtgcccttatttctc 1085
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55297197 accagcctctgtgagcatctgttccaacacccagggcaccagagggtgcccttatttctc 55297138

                                                                            
Query: 1086     cccactcaactgactctaagacaaagtttcgtctttctctgtcttgatgaacaaaagtag 1145
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55297137 cccactcaactgactctaagacaaagtttcgtctttctctgtcttgatgaacaaaagtag 55297078

                                                                            
Query: 1146     agataatgcaatcgggaaagatgtttattaaatatgattgatttcccttcccctacttcc 1205
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55297077 agataatgcaatcgggaaagatgtttattaaatatgattgatttcccttcccctacttcc 55297018

                                               
Query: 1206     agagagagaatagtaaacctgctcaaatctc 1236
                |||||||||||||||||||||||||||||||
Sbjct: 55297017 agagagagaatagtaaacctgctcaaatctc 55296987



 Score =  343 bits (173), Expect = 1e-91
 Identities = 173/173 (100%)
 Strand = Plus / Minus

                                                                            
Query: 735      agtggacattctcagttcagaattcatcccttcgagatctccaaacgcctgtgggccgaa 794
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55298024 agtggacattctcagttcagaattcatcccttcgagatctccaaacgcctgtgggccgaa 55297965

                                                                            
Query: 795      gctacagctgcagaaacgcaagcatcattctttcaacagctttccacctcgacctgctct 854
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55297964 gctacagctgcagaaacgcaagcatcattctttcaacagctttccacctcgacctgctct 55297905

                                                                     
Query: 855      ccctgaagctacaagctgctcagctgccccccacagggaactttggaccaagt 907
                |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55297904 ccctgaagctacaagctgctcagctgccccccacagggaactttggaccaagt 55297852



 Score =  260 bits (131), Expect = 2e-66
 Identities = 131/131 (100%)
 Strand = Plus / Minus

                                                                            
Query: 1        ggctgagggattaggattgagagagcaggcagctgggacccacacagaacttagctggat 60
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55299501 ggctgagggattaggattgagagagcaggcagctgggacccacacagaacttagctggat 55299442

                                                                            
Query: 61       tctgagtgcaggctgttctgacatgacgttggctgtgctcttcttaggggccctgctggg 120
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55299441 tctgagtgcaggctgttctgacatgacgttggctgtgctcttcttaggggccctgctggg 55299382

                           
Query: 121      actcctcgcag 131
                |||||||||||
Sbjct: 55299381 actcctcgcag 55299371



 Score =  252 bits (127), Expect = 4e-64
 Identities = 127/127 (100%)
 Strand = Plus / Minus

                                                                            
Query: 416      agtcctagcccgggctcccaggaggccataggagactacacttggacgaacggctcccag 475
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55299001 agtcctagcccgggctcccaggaggccataggagactacacttggacgaacggctcccag 55298942

                                                                            
Query: 476      ccctgcgtccagctccaagcccagattcagattcgagttctgtacccaacccagggtgga 535
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55298941 ccctgcgtccagctccaagcccagattcagattcgagttctgtacccaacccagggtgga 55298882

                       
Query: 536      ggagagg 542
                |||||||
Sbjct: 55298881 ggagagg 55298875



 Score =  242 bits (122), Expect = 4e-61
 Identities = 122/122 (100%)
 Strand = Plus / Minus

                                                                            
Query: 540      aggcctggggcatctctgtactgaaccccaacaaaaccaaggccctggggggctgtgagg 599
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55298717 aggcctggggcatctctgtactgaaccccaacaaaaccaaggccctggggggctgtgagg 55298658

                                                                            
Query: 600      gtgcccatccccacgtgcgcctctcattcccctacggacagctcacctttggattcaagc 659
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55298657 gtgcccatccccacgtgcgcctctcattcccctacggacagctcacctttggattcaagc 55298598

                  
Query: 660      ag 661
                ||
Sbjct: 55298597 ag 55298596



 Score =  165 bits (83), Expect = 7e-38
 Identities = 86/87 (98%)
 Strand = Plus / Minus

                                                                            
Query: 130      agcccagggagctggggtcgactctcctcataaaaaatcagccactctgctgccatcctt 189
                ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 55299287 agcccagggagctggggtcgactatcctcataaaaaatcagccactctgctgccatcctt 55299228

                                           
Query: 190      cacggtgacacctacggctacagaaag 216
                |||||||||||||||||||||||||||
Sbjct: 55299227 cacggtgacacctacggctacagaaag 55299201



 Score =  151 bits (76), Expect = 1e-33
 Identities = 76/76 (100%)
 Strand = Plus / Minus

                                                                            
Query: 659      cagcagccacaggagagcactgtctacctgaactacatggctgtggagtacaacgtgtcc 718
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55298474 cagcagccacaggagagcactgtctacctgaactacatggctgtggagtacaacgtgtcc 55298415

                                
Query: 719      ttcccccgggcagcgc 734
                ||||||||||||||||
Sbjct: 55298414 ttcccccgggcagcgc 55298399



 Score =  119 bits (60), Expect = 4e-24
 Identities = 60/60 (100%)
 Strand = Plus / Minus

                                                                            
Query: 297      atcctgctaccaccaccagtcacggaaatgccacagttcatccaacaagcagcagcactg 356
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55299120 atcctgctaccaccaccagtcacggaaatgccacagttcatccaacaagcagcagcactg 55299061


>gb|GL893964.1| Sus scrofa unplaced genomic scaffold chrU_scaffold2677
          Length = 22458

 Score =  640 bits (323), Expect = 0.0
 Identities = 329/331 (99%)
 Strand = Plus / Plus

                                                                         
Query: 906   gtttctcttgtcccagtgaccaaaccatcctgctgcctctcatcattggactgattttcc 965
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15245 gtttctcttgtcccagtgaccaaaccatcctgctgcctctcatcattggactgattttcc 15304

                                                                         
Query: 966   ttggcctcctcatcctggtgcttgttaccttctgcatcatccggagacgcccacccgcct 1025
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15305 ttggcctcctcatcctggtgcttgttaccttctgcatcatccggagacgcccacccgcct 15364

                                                                         
Query: 1026  accagcctctgtgagcatctgttccaacacccagggcaccagagggtgcccttatttctc 1085
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15365 accagcctctgtgagcatctgttccaacacccagggcaccagagggtgcccttatttctc 15424

                                                                         
Query: 1086  cccactcaactgactctaagacaaagtttcgtctttctctgtcttgatgaacaaaagtag 1145
             |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 15425 cccactcaactgactctaagacaaagtttcttctttctctgtcttgatgaacaaaagtag 15484

                                                                         
Query: 1146  agataatgcaatcgggaaagatgtttattaaatatgattgatttcccttcccctacttcc 1205
             ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15485 agataatgcaatcgggagagatgtttattaaatatgattgatttcccttcccctacttcc 15544

                                            
Query: 1206  agagagagaatagtaaacctgctcaaatctc 1236
             |||||||||||||||||||||||||||||||
Sbjct: 15545 agagagagaatagtaaacctgctcaaatctc 15575



 Score =  270 bits (136), Expect = 2e-69
 Identities = 136/136 (100%)
 Strand = Plus / Plus

                                                                         
Query: 772   tctccaaacgcctgtgggccgaagctacagctgcagaaacgcaagcatcattctttcaac 831
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14575 tctccaaacgcctgtgggccgaagctacagctgcagaaacgcaagcatcattctttcaac 14634

                                                                         
Query: 832   agctttccacctcgacctgctctccctgaagctacaagctgctcagctgccccccacagg 891
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14635 agctttccacctcgacctgctctccctgaagctacaagctgctcagctgccccccacagg 14694

                             
Query: 892   gaactttggaccaagt 907
             ||||||||||||||||
Sbjct: 14695 gaactttggaccaagt 14710



 Score =  260 bits (131), Expect = 2e-66
 Identities = 131/131 (100%)
 Strand = Plus / Plus

                                                                         
Query: 1     ggctgagggattaggattgagagagcaggcagctgggacccacacagaacttagctggat 60
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13217 ggctgagggattaggattgagagagcaggcagctgggacccacacagaacttagctggat 13276

                                                                         
Query: 61    tctgagtgcaggctgttctgacatgacgttggctgtgctcttcttaggggccctgctggg 120
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13277 tctgagtgcaggctgttctgacatgacgttggctgtgctcttcttaggggccctgctggg 13336

                        
Query: 121   actcctcgcag 131
             |||||||||||
Sbjct: 13337 actcctcgcag 13347



 Score =  252 bits (127), Expect = 4e-64
 Identities = 127/127 (100%)
 Strand = Plus / Plus

                                                                         
Query: 416   agtcctagcccgggctcccaggaggccataggagactacacttggacgaacggctcccag 475
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13691 agtcctagcccgggctcccaggaggccataggagactacacttggacgaacggctcccag 13750

                                                                         
Query: 476   ccctgcgtccagctccaagcccagattcagattcgagttctgtacccaacccagggtgga 535
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13751 ccctgcgtccagctccaagcccagattcagattcgagttctgtacccaacccagggtgga 13810

                    
Query: 536   ggagagg 542
             |||||||
Sbjct: 13811 ggagagg 13817



 Score =  242 bits (122), Expect = 4e-61
 Identities = 122/122 (100%)
 Strand = Plus / Plus

                                                                         
Query: 540   aggcctggggcatctctgtactgaaccccaacaaaaccaaggccctggggggctgtgagg 599
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13974 aggcctggggcatctctgtactgaaccccaacaaaaccaaggccctggggggctgtgagg 14033

                                                                         
Query: 600   gtgcccatccccacgtgcgcctctcattcccctacggacagctcacctttggattcaagc 659
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14034 gtgcccatccccacgtgcgcctctcattcccctacggacagctcacctttggattcaagc 14093

               
Query: 660   ag 661
             ||
Sbjct: 14094 ag 14095



 Score =  151 bits (76), Expect = 1e-33
 Identities = 76/76 (100%)
 Strand = Plus / Plus

                                                                         
Query: 659   cagcagccacaggagagcactgtctacctgaactacatggctgtggagtacaacgtgtcc 718
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14217 cagcagccacaggagagcactgtctacctgaactacatggctgtggagtacaacgtgtcc 14276

                             
Query: 719   ttcccccgggcagcgc 734
             ||||||||||||||||
Sbjct: 14277 ttcccccgggcagcgc 14292



 Score =  119 bits (60), Expect = 4e-24
 Identities = 60/60 (100%)
 Strand = Plus / Plus

                                                                         
Query: 297   atcctgctaccaccaccagtcacggaaatgccacagttcatccaacaagcagcagcactg 356
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13566 atcctgctaccaccaccagtcacggaaatgccacagttcatccaacaagcagcagcactg 13625



 Score = 71.9 bits (36), Expect = 8e-10
 Identities = 36/36 (100%)
 Strand = Plus / Plus

                                                 
Query: 181   gccatccttcacggtgacacctacggctacagaaag 216
             ||||||||||||||||||||||||||||||||||||
Sbjct: 13450 gccatccttcacggtgacacctacggctacagaaag 13485


>Sscrofa_Chr08 
||          Length = 148491826

 Score =  264 bits (133), Expect = 1e-67
 Identities = 163/173 (94%)
 Strand = Plus / Plus

                                                                            
Query: 735      agtggacattctcagttcagaattcatcccttcgagatctccaaacgcctgtgggccgaa 794
                ||||||||||||||||||||||||||||||||||||| |||||||| ||| ||||||  |
Sbjct: 29673727 agtggacattctcagttcagaattcatcccttcgagagctccaaacccctctgggccaga 29673786

                                                                            
Query: 795      gctacagctgcagaaacgcaagcatcattctttcaacagctttccacctcgacctgctct 854
                ||||||| |||||||| |||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 29673787 gctacagttgcagaaatgcaagcatcattctttcaccagctttccacctcgacctgctct 29673846

                                                                     
Query: 855      ccctgaagctacaagctgctcagctgccccccacagggaactttggaccaagt 907
                ||||||||||||||||||||||||||||||||||||||  |||||||||||||
Sbjct: 29673847 ccctgaagctacaagctgctcagctgccccccacaggggcctttggaccaagt 29673899



 Score =  172 bits (87), Expect = 3e-40
 Identities = 114/123 (92%)
 Strand = Plus / Plus

                                                                            
Query: 416      agtcctagcccgggctcccaggaggccataggagactacacttggacgaacggctcccag 475
                |||||||||||  ||||| ||||||  | ||||||||||||||||||||| |||||||||
Sbjct: 29672989 agtcctagcccatgctccaaggaggtgaaaggagactacacttggacgaatggctcccag 29673048

                                                                            
Query: 476      ccctgcgtccagctccaagcccagattcagattcgagttctgtacccaacccagggtgga 535
                ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 29673049 ccctgcgtccacctccaagcccagattcagattcgagttctatacccaacccagggtgga 29673108

                   
Query: 536      gga 538
                |||
Sbjct: 29673109 gga 29673111



 Score =  163 bits (82), Expect = 3e-37
 Identities = 112/122 (91%)
 Strand = Plus / Plus

                                                                            
Query: 540      aggcctggggcatctctgtactgaaccccaacaaaaccaaggccctggggggctgtgagg 599
                |||||||||||||||||||| ||||||||||||||||||||| || ||| |||||||| |
Sbjct: 29673289 aggcctggggcatctctgtagtgaaccccaacaaaaccaaggtccagggaggctgtgaag 29673348

                                                                            
Query: 600      gtgcccatccccacgtgcgcctctcattcccctacggacagctcacctttggattcaagc 659
                |||||||| ||||| ||| ||||||||||||||| |||||||||| ||||||||||||||
Sbjct: 29673349 gtgcccatgcccacttgctcctctcattcccctatggacagctcagctttggattcaagc 29673408

                  
Query: 660      ag 661
                ||
Sbjct: 29673409 ag 29673410



 Score =  109 bits (55), Expect = 4e-21
 Identities = 61/63 (96%)
 Strand = Plus / Plus

                                                                            
Query: 154      tcctcataaaaaatcagccactctgctgccatccttcacggtgacacctacggctacaga 213
                ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct: 29672640 tcctcataaaaaatcagccactctgctaccatccttcactgtgacacctacggctacaga 29672699

                   
Query: 214      aag 216
                |||
Sbjct: 29672700 aag 29672702



 Score = 93.7 bits (47), Expect = 2e-16
 Identities = 87/99 (87%), Gaps = 1/99 (1%)
 Strand = Plus / Plus

                                                                            
Query: 1058     agggcaccagagggtgcccttatttctccccactcaactgactctaagacaaagtttc-g 1116
                ||||| |||||||||||||| ||||||| |||||| ||||||||   ||||||||| | |
Sbjct: 29674345 agggccccagagggtgccctcatttctctccactctactgactcagggacaaagttaccg 29674404

                                                       
Query: 1117     tctttctctgtcttgatgaacaaaagtagagataatgca 1155
                || ||||||||||||||||||||||| ||||||| ||||
Sbjct: 29674405 tccttctctgtcttgatgaacaaaagcagagatagtgca 29674443



 Score = 81.8 bits (41), Expect = 8e-13
 Identities = 62/69 (89%)
 Strand = Plus / Plus

                                                                            
Query: 663      agccacaggagagcactgtctacctgaactacatggctgtggagtacaacgtgtccttcc 722
                |||||| | |||||||||||||||||||||| |||||| | ||| |||||||||||||||
Sbjct: 29673543 agccactgaagagcactgtctacctgaactatatggctattgagcacaacgtgtccttcc 29673602

                         
Query: 723      cccgggcag 731
                || ||||||
Sbjct: 29673603 ccggggcag 29673611



 Score = 77.8 bits (39), Expect = 1e-11
 Identities = 102/123 (82%)
 Strand = Plus / Plus

                                                                            
Query: 1        ggctgagggattaggattgagagagcaggcagctgggacccacacagaacttagctggat 60
                ||||||||||  ||| ||||  ||||||| |||||| |   ||||||||| ||| |||| 
Sbjct: 29672403 ggctgagggaaaagggttgattgagcaggtagctggtagggacacagaacctagatggac 29672462

                                                                            
Query: 61       tctgagtgcaggctgttctgacatgacgttggctgtgctcttcttaggggccctgctggg 120
                |||| ||| ||||||||| | ||||| |||||||||| ||||||  ||||||||||||||
Sbjct: 29672463 tctgggtggaggctgttcagtcatgaggttggctgtgatcttctctggggccctgctggg 29672522

                   
Query: 121      act 123
                |||
Sbjct: 29672523 act 29672525


>Sscrofa_Chr13 
||          Length = 218635234

 Score = 85.7 bits (43), Expect = 5e-14
 Identities = 106/127 (83%)
 Strand = Plus / Plus

                                                                             
Query: 416       agtcctagcccgggctcccaggaggccataggagactacacttggacgaacggctcccag 475
                 |||||||| || |||||  ||||||| |||||||||||||  ||||| ||| | ||||||
Sbjct: 112168933 agtcctagtccaggctctaaggaggcaataggagactacaactggactaacagttcccag 112168992

                                                                             
Query: 476       ccctgcgtccagctccaagcccagattcagattcgagttctgtacccaacccagggtgga 535
                 ||||     ||||||||||||||| ||||||||| |||||||||||||| |||| ||  |
Sbjct: 112168993 ccctatactcagctccaagcccaggttcagattcaagttctgtacccaatccagagtata 112169052

                        
Query: 536       ggagagg 542
                 |||||||
Sbjct: 112169053 ggagagg 112169059



 Score = 67.9 bits (34), Expect = 1e-08
 Identities = 48/52 (92%), Gaps = 3/52 (5%)
 Strand = Plus / Plus

                                                                     
Query: 674       agcactgtctacctgaactacatggctgtggagtacaacgtgtccttccccc 725
                 |||||||||||||||||||| ||||||||||||||||   ||||||||||||
Sbjct: 112169420 agcactgtctacctgaactatatggctgtggagtaca---tgtccttccccc 112169468


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 33,713,231
Number of extensions: 254
Number of successful extensions: 254
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 252
Number of HSP's successfully gapped: 25
Length of query: 1248
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1227
Effective length of database: 2,808,413,156
Effective search space: 3445922942412
Effective search space used: 3445922942412
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)