Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002810
(1248 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001039367.1| macrosialin [Bos taurus]. 308 6e-84
Alignment gi|NP_001068592.1| lysosome-associated membrane glycoprotein 1 ... 57 3e-08
Alignment gi|NP_001106715.1| lysosomal-associated membrane protein 2 isof... 52 8e-07
Alignment gi|NP_001029742.1| lysosomal-associated membrane protein 2 isof... 51 2e-06
>ref|NP_001039367.1| macrosialin [Bos taurus].
Length = 335
Score = 308 bits (789), Expect = 6e-84
Identities = 149/201 (74%), Positives = 163/201 (81%)
Frame = +2
Query: 434 QEAIGDYTWTNGSQPCVQLQAQIQIRVLYPTQGGGEAWGISVLNPNKTKALGGCEGAHPH 613
+EAIGDYTW+NGSQPCV+LQAQIQIRVLYPTQGGGEAWGISVLNPN+TKA GGCEG H H
Sbjct: 135 KEAIGDYTWSNGSQPCVRLQAQIQIRVLYPTQGGGEAWGISVLNPNRTKAQGGCEGTHSH 194
Query: 614 VRLSFPYGQLTFGFKQQPQESTVYLNYMAVEYNVSFPRAAQWTFSVQNSSLRDLQTPVGR 793
+ LSFP GQL+FGFKQ P +S VYLNYMAVEYNVSFP+A QWTFSVQNSSLRDLQTP+G
Sbjct: 195 LLLSFPSGQLSFGFKQDPLQSAVYLNYMAVEYNVSFPQAVQWTFSVQNSSLRDLQTPLGH 254
Query: 794 SYSCRNASIILSTAFHLDLLSLKLQAAQLPPTGNFGPSFSCPSDQXXXXXXXXXXXXXXX 973
S+SCRNASII+S A HLDLLSLKLQAAQL P+G FGPSFSCP+D+
Sbjct: 255 SFSCRNASIIVSPALHLDLLSLKLQAAQLSPSGAFGPSFSCPNDKSILLPLIIGLILLGL 314
Query: 974 XXXXXXXXCIIRRRPPAYQPL 1036
CIIRRRPP YQPL
Sbjct: 315 LTLVLVTFCIIRRRPPTYQPL 335
>ref|NP_001068592.1| lysosome-associated membrane glycoprotein 1 precursor [Bos taurus].
Length = 409
Score = 57.0 bits (136), Expect = 3e-08
Identities = 46/165 (27%), Positives = 72/165 (43%), Gaps = 2/165 (1%)
Frame = +2
Query: 440 AIGDYTWTNGSQPCVQLQAQIQIRVLYPTQGGGEAWGISVLNPNKTKALGGCEGAHPHVR 619
A+ Y + + C+ +Q+ V Y +NPNKT G C +
Sbjct: 210 AVFRYNVSGSNGTCLLASMGLQLNVTYRRVDNKTVTREFNVNPNKTTFGGNCSATLATLE 269
Query: 620 L-SFPYGQLTFGFKQQPQESTVYLNYMAVEYNVSFPRAAQWTFSVQNSSLRDLQTPVGRS 796
L S L F S V+L V+ N++ P A + +F+ NSSLR LQ G S
Sbjct: 270 LHSENLLLLALQFVMNESSSRVFLQ--GVQLNLTLPDAKEGSFTATNSSLRALQATAGNS 327
Query: 797 YSCR-NASIILSTAFHLDLLSLKLQAAQLPPTGNFGPSFSCPSDQ 928
Y C + ++++F L++ + LQA ++ FGP C D+
Sbjct: 328 YKCNAEQRLRVTSSFSLNMFRVWLQAFRV-DGDKFGPVEECQLDE 371
>ref|NP_001106715.1| lysosomal-associated membrane protein 2 isoform 1 [Bos taurus].
Length = 407
Score = 52.4 bits (124), Expect = 8e-07
Identities = 41/165 (24%), Positives = 72/165 (43%), Gaps = 4/165 (2%)
Frame = +2
Query: 443 IGDYTWTNGSQPCVQLQAQIQIRVLYPTQGGGEAWGISVLNPNKTKALGGCEGAHPHVRL 622
+G Y+ N + C+ +Q+ + + + + +NPN T A G C+ +RL
Sbjct: 217 VGSYSVVNSNGTCLLATMGLQLNITHD-----KVASVFNINPNTTNATGSCQPQTALLRL 271
Query: 623 S---FPYGQLTFGFKQQPQESTVYLNYMAVEYNVSFPRAAQWTFSVQNSSLRDLQTPVGR 793
S Y F K E+ YL E NVS +S+ N++L P+G
Sbjct: 272 SSSNIKYLDFVFAVKN---ENRFYLK----EVNVSMILVNGSVYSISNTNLSYWDAPLGS 324
Query: 794 SYSC-RNASIILSTAFHLDLLSLKLQAAQLPPTGNFGPSFSCPSD 925
SY C + ++ +S AF ++ L++Q + G + + C +D
Sbjct: 325 SYMCNKEQTVSVSGAFQINTFDLRVQPFSV-TEGKYSTAQDCSAD 368
>ref|NP_001029742.1| lysosomal-associated membrane protein 2 isoform 2 [Bos taurus].
Length = 407
Score = 51.2 bits (121), Expect = 2e-06
Identities = 41/165 (24%), Positives = 71/165 (43%), Gaps = 4/165 (2%)
Frame = +2
Query: 443 IGDYTWTNGSQPCVQLQAQIQIRVLYPTQGGGEAWGISVLNPNKTKALGGCEGAHPHVRL 622
+G Y+ N + C+ +Q+ + + + + +NPN T A G C+ +RL
Sbjct: 217 VGSYSVVNSNGTCLLATMGLQLNITHD-----KVASVFNINPNTTNATGSCQPQTALLRL 271
Query: 623 S---FPYGQLTFGFKQQPQESTVYLNYMAVEYNVSFPRAAQWTFSVQNSSLRDLQTPVGR 793
S Y F K E+ YL E NVS +S+ N++L P+G
Sbjct: 272 SSSNIKYLDFVFAVKN---ENRFYLK----EVNVSMILVNGSVYSISNTNLSYWDAPLGS 324
Query: 794 SYSC-RNASIILSTAFHLDLLSLKLQAAQLPPTGNFGPSFSCPSD 925
SY C + ++ +S AF ++ L++Q + G + + C D
Sbjct: 325 SYMCNKEQTVSVSGAFQINTFDLRVQPFSV-TEGKYSTAQECSLD 368
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 45,795,173
Number of extensions: 1230474
Number of successful extensions: 5092
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 5081
Number of HSP's successfully gapped: 4
Length of query: 416
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 311
Effective length of database: 14,207,134
Effective search space: 4418418674
Effective search space used: 4418418674
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002810
(1248 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_849733.1| PREDICTED: similar to CD68 antigen isoform 2 [C... 278 6e-75
Alignment gi|XP_546594.1| PREDICTED: similar to CD68 antigen isoform 1 [C... 271 1e-72
Alignment gi|XP_534193.2| PREDICTED: similar to Lysosome-associated membr... 60 6e-09
Alignment gi|XP_856022.1| PREDICTED: similar to Lysosome-associated membr... 60 6e-09
Alignment gi|XP_864590.1| PREDICTED: similar to Lysosome-associated membr... 49 8e-06
Alignment gi|XP_851885.1| PREDICTED: similar to lysosomal-associated memb... 49 8e-06
Alignment gi|XP_848889.1| PREDICTED: similar to lysosomal-associated memb... 49 8e-06
>ref|XP_849733.1| PREDICTED: similar to CD68 antigen isoform 2 [Canis familiaris].
Length = 329
Score = 278 bits (712), Expect = 6e-75
Identities = 131/201 (65%), Positives = 156/201 (77%)
Frame = +2
Query: 434 QEAIGDYTWTNGSQPCVQLQAQIQIRVLYPTQGGGEAWGISVLNPNKTKALGGCEGAHPH 613
Q+AIGDYTWT GSQPC +LQA+IQI V+YPTQ GG+AWGISVLNPN TK G C+GA PH
Sbjct: 129 QDAIGDYTWTTGSQPCARLQARIQIGVVYPTQAGGQAWGISVLNPNSTKPWGDCDGARPH 188
Query: 614 VRLSFPYGQLTFGFKQQPQESTVYLNYMAVEYNVSFPRAAQWTFSVQNSSLRDLQTPVGR 793
+ LSFP+GQL+FGF Q+PQ+ +VYL+Y+A++YNVSFP+AAQWTFS QN+SLR LQ P+G+
Sbjct: 189 LLLSFPFGQLSFGFTQEPQQGSVYLDYLALQYNVSFPQAAQWTFSGQNASLRALQAPLGQ 248
Query: 794 SYSCRNASIILSTAFHLDLLSLKLQAAQLPPTGNFGPSFSCPSDQXXXXXXXXXXXXXXX 973
S+SCRNASI+L+ A LDLL LKLQAAQLPP+G FGPSFSCPS+
Sbjct: 249 SFSCRNASILLTPALRLDLLHLKLQAAQLPPSGAFGPSFSCPSEHFNLLPLIVGVISLGL 308
Query: 974 XXXXXXXXCIIRRRPPAYQPL 1036
CIIRRRPP YQPL
Sbjct: 309 LALALVTFCIIRRRPPTYQPL 329
>ref|XP_546594.1| PREDICTED: similar to CD68 antigen isoform 1 [Canis familiaris].
Length = 337
Score = 271 bits (693), Expect = 1e-72
Identities = 131/209 (62%), Positives = 156/209 (74%), Gaps = 8/209 (3%)
Frame = +2
Query: 434 QEAIGDYTWTNGSQPCVQLQAQIQIRVLYPTQGGGE--------AWGISVLNPNKTKALG 589
Q+AIGDYTWT GSQPC +LQA+IQI V+YPTQ GG+ AWGISVLNPN TK G
Sbjct: 129 QDAIGDYTWTTGSQPCARLQARIQIGVVYPTQAGGQVEPPVGAGAWGISVLNPNSTKPWG 188
Query: 590 GCEGAHPHVRLSFPYGQLTFGFKQQPQESTVYLNYMAVEYNVSFPRAAQWTFSVQNSSLR 769
C+GA PH+ LSFP+GQL+FGF Q+PQ+ +VYL+Y+A++YNVSFP+AAQWTFS QN+SLR
Sbjct: 189 DCDGARPHLLLSFPFGQLSFGFTQEPQQGSVYLDYLALQYNVSFPQAAQWTFSGQNASLR 248
Query: 770 DLQTPVGRSYSCRNASIILSTAFHLDLLSLKLQAAQLPPTGNFGPSFSCPSDQXXXXXXX 949
LQ P+G+S+SCRNASI+L+ A LDLL LKLQAAQLPP+G FGPSFSCPS+
Sbjct: 249 ALQAPLGQSFSCRNASILLTPALRLDLLHLKLQAAQLPPSGAFGPSFSCPSEHFNLLPLI 308
Query: 950 XXXXXXXXXXXXXXXXCIIRRRPPAYQPL 1036
CIIRRRPP YQPL
Sbjct: 309 VGVISLGLLALALVTFCIIRRRPPTYQPL 337
>ref|XP_534193.2| PREDICTED: similar to Lysosome-associated membrane glycoprotein 1
precursor (LAMP-1) (CD107a antigen) isoform 1 [Canis
familiaris].
Length = 413
Score = 59.7 bits (143), Expect = 6e-09
Identities = 44/165 (26%), Positives = 73/165 (44%), Gaps = 2/165 (1%)
Frame = +2
Query: 440 AIGDYTWTNGSQPCVQLQAQIQIRVLYPTQGGGEAWGISVLNPNKTKALGGCEGAHPHVR 619
++ Y + + C+ +Q+ V Y + + +NPNKT A G C +
Sbjct: 214 SVHKYNVSGANGTCLLASMGLQLNVTYKKKDNTTVVKVVSINPNKTTAGGSCGAQLVTLE 273
Query: 620 L-SFPYGQLTFGFKQQPQESTVYLNYMAVEYNVSFPRAAQWTFSVQNSSLRDLQTPVGRS 796
L S L F F S +L ++ N++ P A TF N+SLR LQ +G S
Sbjct: 274 LRSESVTLLAFQFGMNASTSRFFLQ--GIQLNMTLPDARDPTFKAGNNSLRALQATIGNS 331
Query: 797 YSCR-NASIILSTAFHLDLLSLKLQAAQLPPTGNFGPSFSCPSDQ 928
Y C + ++ AF ++++ + +QA Q+ FG C D+
Sbjct: 332 YKCNAGEHVQVTEAFSVNIIKVWVQAFQV-QGDKFGSVEECQLDE 375
>ref|XP_856022.1| PREDICTED: similar to Lysosome-associated membrane glycoprotein 1
precursor (LAMP-1) (CD107a antigen) isoform 2 [Canis
familiaris].
Length = 374
Score = 59.7 bits (143), Expect = 6e-09
Identities = 44/165 (26%), Positives = 73/165 (44%), Gaps = 2/165 (1%)
Frame = +2
Query: 440 AIGDYTWTNGSQPCVQLQAQIQIRVLYPTQGGGEAWGISVLNPNKTKALGGCEGAHPHVR 619
++ Y + + C+ +Q+ V Y + + +NPNKT A G C +
Sbjct: 175 SVHKYNVSGANGTCLLASMGLQLNVTYKKKDNTTVVKVVSINPNKTTAGGSCGAQLVTLE 234
Query: 620 L-SFPYGQLTFGFKQQPQESTVYLNYMAVEYNVSFPRAAQWTFSVQNSSLRDLQTPVGRS 796
L S L F F S +L ++ N++ P A TF N+SLR LQ +G S
Sbjct: 235 LRSESVTLLAFQFGMNASTSRFFLQ--GIQLNMTLPDARDPTFKAGNNSLRALQATIGNS 292
Query: 797 YSCR-NASIILSTAFHLDLLSLKLQAAQLPPTGNFGPSFSCPSDQ 928
Y C + ++ AF ++++ + +QA Q+ FG C D+
Sbjct: 293 YKCNAGEHVQVTEAFSVNIIKVWVQAFQV-QGDKFGSVEECQLDE 336
>ref|XP_864590.1| PREDICTED: similar to Lysosome-associated membrane glycoprotein 2
precursor (LAMP-2) (CD107b antigen) isoform 4 [Canis
familiaris].
Length = 411
Score = 49.3 bits (116), Expect = 8e-06
Identities = 40/165 (24%), Positives = 71/165 (43%), Gaps = 4/165 (2%)
Frame = +2
Query: 443 IGDYTWTNGSQPCVQLQAQIQIRVLYPTQGGGEAWGISVLNPNKTKALGGCEGAHPHVRL 622
+G Y+ N + C+ +Q+ + + + + +NPN T G C+ +RL
Sbjct: 221 VGSYSVNNSNGTCLLATMGLQLNITH-----NKVASVININPNTTDFTGSCQPQTALLRL 275
Query: 623 S---FPYGQLTFGFKQQPQESTVYLNYMAVEYNVSFPRAAQWTFSVQNSSLRDLQTPVGR 793
+ Y F K E+ YL E NVS FS+ N++L P+G
Sbjct: 276 NSSNIKYLDFVFAVKN---ENRFYLK----EVNVSMYLVNGSVFSIANNNLSYWDAPLGS 328
Query: 794 SYSC-RNASIILSTAFHLDLLSLKLQAAQLPPTGNFGPSFSCPSD 925
SY C + ++ +S AF ++ L++Q + G + + C +D
Sbjct: 329 SYMCNKEQTVSVSGAFQINTFDLRVQPFNV-MEGKYSTAQDCSAD 372
>ref|XP_851885.1| PREDICTED: similar to lysosomal-associated membrane protein 2
precursor isoform 2 [Canis familiaris].
Length = 412
Score = 49.3 bits (116), Expect = 8e-06
Identities = 40/165 (24%), Positives = 71/165 (43%), Gaps = 4/165 (2%)
Frame = +2
Query: 443 IGDYTWTNGSQPCVQLQAQIQIRVLYPTQGGGEAWGISVLNPNKTKALGGCEGAHPHVRL 622
+G Y+ N + C+ +Q+ + + + + +NPN T G C+ +RL
Sbjct: 221 VGSYSVNNSNGTCLLATMGLQLNITH-----NKVASVININPNTTDFTGSCQPQTALLRL 275
Query: 623 S---FPYGQLTFGFKQQPQESTVYLNYMAVEYNVSFPRAAQWTFSVQNSSLRDLQTPVGR 793
+ Y F K E+ YL E NVS FS+ N++L P+G
Sbjct: 276 NSSNIKYLDFVFAVKN---ENRFYLK----EVNVSMYLVNGSVFSIANNNLSYWDAPLGS 328
Query: 794 SYSC-RNASIILSTAFHLDLLSLKLQAAQLPPTGNFGPSFSCPSD 925
SY C + ++ +S AF ++ L++Q + G + + C +D
Sbjct: 329 SYMCNKEQTVSVSGAFQINTFDLRVQPFNV-MEGKYSTAEECSAD 372
>ref|XP_848889.1| PREDICTED: similar to lysosomal-associated membrane protein 3
[Canis familiaris].
Length = 479
Score = 49.3 bits (116), Expect = 8e-06
Identities = 44/161 (27%), Positives = 73/161 (45%), Gaps = 1/161 (0%)
Frame = +2
Query: 446 GDYTWTNGSQPCVQLQAQIQIRVLYPTQGGGEAWGISVLNPNKTKALGGCEGAHPHVRLS 625
G Y NGS+ C++ + I++ V T+ ++PN T+ G C ++ L+
Sbjct: 289 GIYQVLNGSRLCIKAEMGIELMV-QDTKSVFSPQRYFNIDPNATQTSGNCGSQKSNLLLN 347
Query: 626 FPYGQLTFGFKQQPQESTVYLNYMAVEYNVSFPRAAQWTFSVQNSSLRDLQTPVGRSYSC 805
F G + F + E++ Y+N + VS P + + SS+ +T VG S+ C
Sbjct: 348 FQGGFVNLTFLK--DENSYYINEVGAYLAVSNP---EKIYQGMKSSVVMFETGVGHSFKC 402
Query: 806 -RNASIILSTAFHLDLLSLKLQAAQLPPTGNFGPSFSCPSD 925
SI LST L ++++ QA +FG C SD
Sbjct: 403 VSEQSIQLSTHLQLKTMNVQFQAFDF-EDDHFGNVDECSSD 442
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 47,740,527
Number of extensions: 1265391
Number of successful extensions: 5270
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 5249
Number of HSP's successfully gapped: 7
Length of query: 416
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 311
Effective length of database: 15,374,224
Effective search space: 4781383664
Effective search space used: 4781383664
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002810
(1248 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001035148.1| macrosialin isoform B [Homo sapiens]. 288 6e-78
Alignment gi|NP_001242.2| macrosialin isoform A [Homo sapiens]. 288 6e-78
Alignment gi|NP_005552.3| lysosome-associated membrane glycoprotein 1 pre... 57 3e-08
Alignment gi|NP_001116078.1| lysosome-associated membrane glycoprotein 2 ... 50 3e-06
Alignment gi|NP_002285.1| lysosome-associated membrane glycoprotein 2 iso... 50 3e-06
Alignment gi|NP_054701.1| lysosome-associated membrane glycoprotein 2 iso... 49 7e-06
>ref|NP_001035148.1| macrosialin isoform B [Homo sapiens].
Length = 327
Score = 288 bits (738), Expect = 6e-78
Identities = 149/241 (61%), Positives = 162/241 (67%)
Frame = +2
Query: 314 SHGNATVHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQEAIGDYTWTNGSQPCVQLQ 493
SHGNATVH +E IGDYTWTNGSQPCV LQ
Sbjct: 88 SHGNATVHPTSNSTATSPGFTSSAHPEPPPPSPSPSPTS-KETIGDYTWTNGSQPCVHLQ 146
Query: 494 AQIQIRVLYPTQGGGEAWGISVLNPNKTKALGGCEGAHPHVRLSFPYGQLTFGFKQQPQE 673
AQIQIRV+Y TQGGGEAWGISVLNPNKTK G CEGAHPH+ LSFPYG L+FGF Q Q+
Sbjct: 147 AQIQIRVMYTTQGGGEAWGISVLNPNKTKVQGSCEGAHPHLLLSFPYGHLSFGFMQDLQQ 206
Query: 674 STVYLNYMAVEYNVSFPRAAQWTFSVQNSSLRDLQTPVGRSYSCRNASIILSTAFHLDLL 853
VYL+YMAVEYNVSFP AAQWTFS QN+SLRDLQ P+G+S+SC N+SIILS A HLDLL
Sbjct: 207 KVVYLSYMAVEYNVSFPHAAQWTFSAQNASLRDLQAPLGQSFSCSNSSIILSPAVHLDLL 266
Query: 854 SLKLQAAQLPPTGNFGPSFSCPSDQXXXXXXXXXXXXXXXXXXXXXXXCIIRRRPPAYQP 1033
SL+LQAAQLP TG FG SFSCPSD+ CIIRRRP AYQ
Sbjct: 267 SLRLQAAQLPHTGVFGQSFSCPSDRSILLPLIIGLILLGLLALVLIAFCIIRRRPSAYQA 326
Query: 1034 L 1036
L
Sbjct: 327 L 327
>ref|NP_001242.2| macrosialin isoform A [Homo sapiens].
Length = 354
Score = 288 bits (738), Expect = 6e-78
Identities = 149/241 (61%), Positives = 162/241 (67%)
Frame = +2
Query: 314 SHGNATVHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQEAIGDYTWTNGSQPCVQLQ 493
SHGNATVH +E IGDYTWTNGSQPCV LQ
Sbjct: 115 SHGNATVHPTSNSTATSPGFTSSAHPEPPPPSPSPSPTS-KETIGDYTWTNGSQPCVHLQ 173
Query: 494 AQIQIRVLYPTQGGGEAWGISVLNPNKTKALGGCEGAHPHVRLSFPYGQLTFGFKQQPQE 673
AQIQIRV+Y TQGGGEAWGISVLNPNKTK G CEGAHPH+ LSFPYG L+FGF Q Q+
Sbjct: 174 AQIQIRVMYTTQGGGEAWGISVLNPNKTKVQGSCEGAHPHLLLSFPYGHLSFGFMQDLQQ 233
Query: 674 STVYLNYMAVEYNVSFPRAAQWTFSVQNSSLRDLQTPVGRSYSCRNASIILSTAFHLDLL 853
VYL+YMAVEYNVSFP AAQWTFS QN+SLRDLQ P+G+S+SC N+SIILS A HLDLL
Sbjct: 234 KVVYLSYMAVEYNVSFPHAAQWTFSAQNASLRDLQAPLGQSFSCSNSSIILSPAVHLDLL 293
Query: 854 SLKLQAAQLPPTGNFGPSFSCPSDQXXXXXXXXXXXXXXXXXXXXXXXCIIRRRPPAYQP 1033
SL+LQAAQLP TG FG SFSCPSD+ CIIRRRP AYQ
Sbjct: 294 SLRLQAAQLPHTGVFGQSFSCPSDRSILLPLIIGLILLGLLALVLIAFCIIRRRPSAYQA 353
Query: 1034 L 1036
L
Sbjct: 354 L 354
>ref|NP_005552.3| lysosome-associated membrane glycoprotein 1 precursor [Homo
sapiens].
Length = 417
Score = 57.4 bits (137), Expect = 3e-08
Identities = 47/159 (29%), Positives = 69/159 (43%), Gaps = 3/159 (1%)
Frame = +2
Query: 461 TNGSQPCVQLQAQIQIRVLYPTQGGGEAWGISVLNPNKTKALGGCEGAHPHVRLSFPYGQ 640
TNG+ C+ +Q+ + Y + + +NPNKT A G C GAH G
Sbjct: 227 TNGT--CLLASMGLQLNLTYERKDNTTVTRLLNINPNKTSASGSC-GAHLVTLELHSEGT 283
Query: 641 --LTFGFKQQPQESTVYLNYMAVEYNVSFPRAAQWTFSVQNSSLRDLQTPVGRSYSCR-N 811
L F F S +L ++ N P A F N SLR LQ VG SY C
Sbjct: 284 TVLLFQFGMNASSSRFFLQ--GIQLNTILPDARDPAFKAANGSLRALQATVGNSYKCNAE 341
Query: 812 ASIILSTAFHLDLLSLKLQAAQLPPTGNFGPSFSCPSDQ 928
+ ++ AF +++ + +QA ++ G FG C D+
Sbjct: 342 EHVRVTKAFSVNIFKVWVQAFKV-EGGQFGSVEECLLDE 379
>ref|NP_001116078.1| lysosome-associated membrane glycoprotein 2 isoform C precursor
[Homo sapiens].
Length = 411
Score = 50.4 bits (119), Expect = 3e-06
Identities = 42/164 (25%), Positives = 72/164 (43%), Gaps = 4/164 (2%)
Frame = +2
Query: 446 GDYTWTNGSQPCVQLQAQIQIRVLYPTQGGGEAWGISVLNPNKTKALGGCEGAHPHVRLS 625
G Y+ NG+ C+ +Q+ + TQ + + +NPN T + G C +RL+
Sbjct: 221 GTYSVNNGNDTCLLATMGLQLNI---TQD--KVASVININPNTTHSTGSCRSHTALLRLN 275
Query: 626 ---FPYGQLTFGFKQQPQESTVYLNYMAVEYNVSFPRAAQWTFSVQNSSLRDLQTPVGRS 796
Y F K E+ YL E N+S FS+ N++L P+G S
Sbjct: 276 SSTIKYLDFVFAVKN---ENRFYLK----EVNISMYLVNGSVFSIANNNLSYWDAPLGSS 328
Query: 797 YSC-RNASIILSTAFHLDLLSLKLQAAQLPPTGNFGPSFSCPSD 925
Y C + ++ +S AF ++ L++Q + G + + C +D
Sbjct: 329 YMCNKEQTVSVSGAFQINTFDLRVQPFNV-TQGKYSTAEECSAD 371
>ref|NP_002285.1| lysosome-associated membrane glycoprotein 2 isoform A precursor
[Homo sapiens].
Length = 410
Score = 50.4 bits (119), Expect = 3e-06
Identities = 42/164 (25%), Positives = 72/164 (43%), Gaps = 4/164 (2%)
Frame = +2
Query: 446 GDYTWTNGSQPCVQLQAQIQIRVLYPTQGGGEAWGISVLNPNKTKALGGCEGAHPHVRLS 625
G Y+ NG+ C+ +Q+ + TQ + + +NPN T + G C +RL+
Sbjct: 221 GTYSVNNGNDTCLLATMGLQLNI---TQD--KVASVININPNTTHSTGSCRSHTALLRLN 275
Query: 626 ---FPYGQLTFGFKQQPQESTVYLNYMAVEYNVSFPRAAQWTFSVQNSSLRDLQTPVGRS 796
Y F K E+ YL E N+S FS+ N++L P+G S
Sbjct: 276 SSTIKYLDFVFAVKN---ENRFYLK----EVNISMYLVNGSVFSIANNNLSYWDAPLGSS 328
Query: 797 YSC-RNASIILSTAFHLDLLSLKLQAAQLPPTGNFGPSFSCPSD 925
Y C + ++ +S AF ++ L++Q + G + + C +D
Sbjct: 329 YMCNKEQTVSVSGAFQINTFDLRVQPFNV-TQGKYSTAQDCSAD 371
>ref|NP_054701.1| lysosome-associated membrane glycoprotein 2 isoform B precursor
[Homo sapiens].
Length = 410
Score = 49.3 bits (116), Expect = 7e-06
Identities = 42/164 (25%), Positives = 71/164 (43%), Gaps = 4/164 (2%)
Frame = +2
Query: 446 GDYTWTNGSQPCVQLQAQIQIRVLYPTQGGGEAWGISVLNPNKTKALGGCEGAHPHVRLS 625
G Y+ NG+ C+ +Q+ + TQ + + +NPN T + G C +RL+
Sbjct: 221 GTYSVNNGNDTCLLATMGLQLNI---TQD--KVASVININPNTTHSTGSCRSHTALLRLN 275
Query: 626 ---FPYGQLTFGFKQQPQESTVYLNYMAVEYNVSFPRAAQWTFSVQNSSLRDLQTPVGRS 796
Y F K E+ YL E N+S FS+ N++L P+G S
Sbjct: 276 SSTIKYLDFVFAVKN---ENRFYLK----EVNISMYLVNGSVFSIANNNLSYWDAPLGSS 328
Query: 797 YSC-RNASIILSTAFHLDLLSLKLQAAQLPPTGNFGPSFSCPSD 925
Y C + ++ +S AF ++ L++Q + G + + C D
Sbjct: 329 YMCNKEQTVSVSGAFQINTFDLRVQPFNV-TQGKYSTAQECSLD 371
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 46,779,183
Number of extensions: 1243540
Number of successful extensions: 4961
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 4946
Number of HSP's successfully gapped: 6
Length of query: 416
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 311
Effective length of database: 14,835,944
Effective search space: 4613978584
Effective search space used: 4613978584
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002810
(1248 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_033983.1| macrosialin [Mus musculus]. 265 4e-71
Alignment gi|NP_034814.2| lysosome-associated membrane glycoprotein 1 [Mu... 52 1e-06
>ref|NP_033983.1| macrosialin [Mus musculus].
Length = 335
Score = 265 bits (678), Expect = 4e-71
Identities = 134/210 (63%), Positives = 150/210 (71%), Gaps = 11/210 (5%)
Frame = +2
Query: 440 AIGDYTWTNGSQPCVQLQAQIQIRVLYPTQGGGE---------AWGISVLNPNKTKALGG 592
A+G+YTW NGSQPCVQLQAQIQIR+LYP QGG + AWGISVLNPNKTK GG
Sbjct: 126 ALGNYTWANGSQPCVQLQAQIQIRILYPIQGGRKVKLKWGLKRAWGISVLNPNKTKVQGG 185
Query: 593 CEGAHPHVRLSFPYGQLTFGFKQQPQES--TVYLNYMAVEYNVSFPRAAQWTFSVQNSSL 766
C+G HPH+ LSFPYGQLTFGFKQ +S TVYL+YMAVEYNVSFP+AAQWTF QNSSL
Sbjct: 186 CDGTHPHLSLSFPYGQLTFGFKQDLHQSPSTVYLDYMAVEYNVSFPQAAQWTFMAQNSSL 245
Query: 767 RDLQTPVGRSYSCRNASIILSTAFHLDLLSLKLQAAQLPPTGNFGPSFSCPSDQXXXXXX 946
R+LQ P+G+S+ C NASI+LS A HLDLLSL+LQAAQLP G+FGP FSC DQ
Sbjct: 246 RELQAPLGQSFCCGNASIVLSPAVHLDLLSLRLQAAQLPDKGHFGPCFSCNRDQSLLLPL 305
Query: 947 XXXXXXXXXXXXXXXXXCIIRRRPPAYQPL 1036
CI RRR YQPL
Sbjct: 306 IIGLVLLGLLTLVLIAFCITRRRQSTYQPL 335
>ref|NP_034814.2| lysosome-associated membrane glycoprotein 1 [Mus musculus].
Length = 406
Score = 51.6 bits (122), Expect = 1e-06
Identities = 41/162 (25%), Positives = 68/162 (41%), Gaps = 1/162 (0%)
Frame = +2
Query: 443 IGDYTWTNGSQPCVQLQAQIQIRVLYPTQGGGEAWGISVLNPNKTKALGGCEGAHPHVRL 622
+ Y T + C+ +Q+ + Y + ++PN T + G C +++
Sbjct: 210 VSKYNVTGNNGTCLLASMALQLNITYLKKDNKTVTRAFNISPNDTSS-GSCGINLVTLKV 268
Query: 623 SFPYGQLTFGFKQQPQESTVYLNYMAVEYNVSFPRAAQWTFSVQNSSLRDLQTPVGRSYS 802
L F S +L V N++ P A TFS+ N SL+ LQ VG SY
Sbjct: 269 ENKNRALELQFGMNASSSLFFLQ--GVRLNMTLPDALVPTFSISNHSLKALQATVGNSYK 326
Query: 803 CRNAS-IILSTAFHLDLLSLKLQAAQLPPTGNFGPSFSCPSD 925
C I +S L++ S+++QA ++ + FG C D
Sbjct: 327 CNTEEHIFVSKMLSLNVFSVQVQAFKV-DSDRFGSVEECVQD 367
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 39,498,877
Number of extensions: 1035104
Number of successful extensions: 4025
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4005
Number of HSP's successfully gapped: 2
Length of query: 416
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 312
Effective length of database: 12,493,815
Effective search space: 3898070280
Effective search space used: 3898070280
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002810
(1248 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003131995.1| PREDICTED: macrosialin-like [Sus scrofa]. 368 e-102
Alignment gi|XP_003361281.1| PREDICTED: macrosialin-like [Sus scrofa]. 332 3e-91
Alignment gi|XP_003128951.1| PREDICTED: macrosialin-like isoform 2 [Sus s... 295 5e-80
Alignment gi|XP_003128950.1| PREDICTED: macrosialin-like isoform 1 [Sus s... 295 5e-80
Alignment gi|NP_001011507.1| lysosome-associated membrane glycoprotein 1 ... 63 4e-10
Alignment gi|XP_001926493.1| PREDICTED: lysosome-associated membrane glyc... 50 3e-06
Alignment gi|XP_003360473.1| PREDICTED: lysosome-associated membrane glyc... 49 6e-06
>ref|XP_003131995.1| PREDICTED: macrosialin-like [Sus scrofa].
Length = 291
Score = 368 bits (944), Expect = e-102
Identities = 186/241 (77%), Positives = 186/241 (77%)
Frame = +2
Query: 314 SHGNATVHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQEAIGDYTWTNGSQPCVQLQ 493
SHGNATVH QEAIGDYTWTNGSQPCVQLQ
Sbjct: 51 SHGNATVHPTSSSTATSPGSSTRPPHPGPPPPSPSPSPGSQEAIGDYTWTNGSQPCVQLQ 110
Query: 494 AQIQIRVLYPTQGGGEAWGISVLNPNKTKALGGCEGAHPHVRLSFPYGQLTFGFKQQPQE 673
AQIQIRVLYPTQGGGEAWGISVLNPNKTKALGGCEGAHPHVRLSFPYGQLTFGFKQQPQE
Sbjct: 111 AQIQIRVLYPTQGGGEAWGISVLNPNKTKALGGCEGAHPHVRLSFPYGQLTFGFKQQPQE 170
Query: 674 STVYLNYMAVEYNVSFPRAAQWTFSVQNSSLRDLQTPVGRSYSCRNASIILSTAFHLDLL 853
STVYLNYMAVEYNVSFPRAAQWTFSVQNSSLRDLQTPVGRSYSCRNASIILSTAFHLDLL
Sbjct: 171 STVYLNYMAVEYNVSFPRAAQWTFSVQNSSLRDLQTPVGRSYSCRNASIILSTAFHLDLL 230
Query: 854 SLKLQAAQLPPTGNFGPSFSCPSDQXXXXXXXXXXXXXXXXXXXXXXXCIIRRRPPAYQP 1033
SLKLQAAQLPPTGNFGPSFSCPSDQ CIIRRRPPAYQP
Sbjct: 231 SLKLQAAQLPPTGNFGPSFSCPSDQTILLPLIIGLIFLGLLILVLVTFCIIRRRPPAYQP 290
Query: 1034 L 1036
L
Sbjct: 291 L 291
>ref|XP_003361281.1| PREDICTED: macrosialin-like [Sus scrofa].
Length = 282
Score = 332 bits (851), Expect = 3e-91
Identities = 167/201 (83%), Positives = 167/201 (83%)
Frame = +2
Query: 434 QEAIGDYTWTNGSQPCVQLQAQIQIRVLYPTQGGGEAWGISVLNPNKTKALGGCEGAHPH 613
QEAIGDYTWTNGSQPCVQLQAQIQIRVLYPTQGGGEAWGISVLNPNKTKALGGCEGAHPH
Sbjct: 93 QEAIGDYTWTNGSQPCVQLQAQIQIRVLYPTQGGGEAWGISVLNPNKTKALGGCEGAHPH 152
Query: 614 VRLSFPYGQLTFGFKQQPQESTVYLNYMAVEYNVSFPRAAQWTFSVQNSSLRDLQTPVGR 793
VRLSFPYGQLTFGFKQQPQESTVYLNYMAVEYNVSFPRAA RDLQTPVGR
Sbjct: 153 VRLSFPYGQLTFGFKQQPQESTVYLNYMAVEYNVSFPRAA-----------RDLQTPVGR 201
Query: 794 SYSCRNASIILSTAFHLDLLSLKLQAAQLPPTGNFGPSFSCPSDQXXXXXXXXXXXXXXX 973
SYSCRNASIILSTAFHLDLLSLKLQAAQLPPTGNFGPSFSCPSDQ
Sbjct: 202 SYSCRNASIILSTAFHLDLLSLKLQAAQLPPTGNFGPSFSCPSDQTILLPLIIGLIFLGL 261
Query: 974 XXXXXXXXCIIRRRPPAYQPL 1036
CIIRRRPPAYQPL
Sbjct: 262 LILVLVTFCIIRRRPPAYQPL 282
>ref|XP_003128951.1| PREDICTED: macrosialin-like isoform 2 [Sus scrofa].
Length = 320
Score = 295 bits (754), Expect = 5e-80
Identities = 145/201 (72%), Positives = 159/201 (79%)
Frame = +2
Query: 434 QEAIGDYTWTNGSQPCVQLQAQIQIRVLYPTQGGGEAWGISVLNPNKTKALGGCEGAHPH 613
+E GDYTWTNGSQPCV LQAQIQIRVLYPTQGGG+AWGISV+NPNKTK GGCEGAH H
Sbjct: 120 KEVKGDYTWTNGSQPCVHLQAQIQIRVLYPTQGGGKAWGISVVNPNKTKVQGGCEGAHAH 179
Query: 614 VRLSFPYGQLTFGFKQQPQESTVYLNYMAVEYNVSFPRAAQWTFSVQNSSLRDLQTPVGR 793
+ LSFPYGQL+FGFKQ+P +STVYLNYMA+E+NVSFP A QWTFSVQNSSLR+LQTP+G+
Sbjct: 180 LLLSFPYGQLSFGFKQEPLKSTVYLNYMAIEHNVSFPGAVQWTFSVQNSSLRELQTPLGQ 239
Query: 794 SYSCRNASIILSTAFHLDLLSLKLQAAQLPPTGNFGPSFSCPSDQXXXXXXXXXXXXXXX 973
SYSCRNASIILS AFHLDLLSLKLQAAQLPPTG FGP+F CPSD+
Sbjct: 240 SYSCRNASIILSPAFHLDLLSLKLQAAQLPPTGAFGPNFFCPSDKSNMRPLIISLILIGI 299
Query: 974 XXXXXXXXCIIRRRPPAYQPL 1036
IRRR YQ L
Sbjct: 300 IISMFVTFPFIRRRRRIYQLL 320
>ref|XP_003128950.1| PREDICTED: macrosialin-like isoform 1 [Sus scrofa].
Length = 400
Score = 295 bits (754), Expect = 5e-80
Identities = 145/201 (72%), Positives = 159/201 (79%)
Frame = +2
Query: 434 QEAIGDYTWTNGSQPCVQLQAQIQIRVLYPTQGGGEAWGISVLNPNKTKALGGCEGAHPH 613
+E GDYTWTNGSQPCV LQAQIQIRVLYPTQGGG+AWGISV+NPNKTK GGCEGAH H
Sbjct: 200 KEVKGDYTWTNGSQPCVHLQAQIQIRVLYPTQGGGKAWGISVVNPNKTKVQGGCEGAHAH 259
Query: 614 VRLSFPYGQLTFGFKQQPQESTVYLNYMAVEYNVSFPRAAQWTFSVQNSSLRDLQTPVGR 793
+ LSFPYGQL+FGFKQ+P +STVYLNYMA+E+NVSFP A QWTFSVQNSSLR+LQTP+G+
Sbjct: 260 LLLSFPYGQLSFGFKQEPLKSTVYLNYMAIEHNVSFPGAVQWTFSVQNSSLRELQTPLGQ 319
Query: 794 SYSCRNASIILSTAFHLDLLSLKLQAAQLPPTGNFGPSFSCPSDQXXXXXXXXXXXXXXX 973
SYSCRNASIILS AFHLDLLSLKLQAAQLPPTG FGP+F CPSD+
Sbjct: 320 SYSCRNASIILSPAFHLDLLSLKLQAAQLPPTGAFGPNFFCPSDKSNMRPLIISLILIGI 379
Query: 974 XXXXXXXXCIIRRRPPAYQPL 1036
IRRR YQ L
Sbjct: 380 IISMFVTFPFIRRRRRIYQLL 400
Score = 50.8 bits (120), Expect = 2e-06
Identities = 29/63 (46%), Positives = 30/63 (47%)
Frame = +2
Query: 2 AEGLGLREQAAGTHTELSWILSAGCSDMTXXXXXXXXXXXXXXXXXXXVDSPHKKSATLL 181
AEG GL EQ AG TE W L GCS M + PHKKSATLL
Sbjct: 27 AEGKGLIEQVAGRDTEPRWTLGGGCSVMRLAVIFSGALLGLLAAQDTGNECPHKKSATLL 86
Query: 182 PSF 190
PSF
Sbjct: 87 PSF 89
>ref|NP_001011507.1| lysosome-associated membrane glycoprotein 1 [Sus scrofa].
Length = 413
Score = 62.8 bits (151), Expect = 4e-10
Identities = 47/164 (28%), Positives = 75/164 (45%), Gaps = 2/164 (1%)
Frame = +2
Query: 443 IGDYTWTNGSQPCVQLQAQIQIRVLYPTQGGGEAWGISVLNPNKTKALGGCEGAHPHVRL 622
+ Y + + C+ +Q+ V Y T+ +NPNKT G C + L
Sbjct: 215 VSRYNVSGANGTCLLASMGLQLNVTYRTKDNTTVTRGLNINPNKTTFGGSCSAQLVTLEL 274
Query: 623 SFPYGQL-TFGFKQQPQESTVYLNYMAVEYNVSFPRAAQWTFSVQNSSLRDLQTPVGRSY 799
+L F S V+L V+ N++ P A +FS NSSLR LQ G SY
Sbjct: 275 QGESLRLLALQFALNTSSSRVFLQ--GVQLNMTLPDARDPSFSAANSSLRALQATAGNSY 332
Query: 800 SCRNAS-IILSTAFHLDLLSLKLQAAQLPPTGNFGPSFSCPSDQ 928
CR+ + ++ AF L++ +++QA ++ FGP+ C D+
Sbjct: 333 KCRSEQRLQVTEAFALNVFQVRVQAFRV-DGDKFGPAEECQLDE 375
>ref|XP_001926493.1| PREDICTED: lysosome-associated membrane glycoprotein 2 isoform 1
[Sus scrofa].
Length = 411
Score = 50.1 bits (118), Expect = 3e-06
Identities = 43/164 (26%), Positives = 73/164 (44%), Gaps = 4/164 (2%)
Frame = +2
Query: 446 GDYTWTNGSQPCVQLQAQIQIRVLYPTQGGGEAWGISVLNPNKTKALGGCEGAHPHVRLS 625
G Y+ T+ + C+ +Q+ + TQ + + +NPN T A G C +RLS
Sbjct: 222 GSYSVTSSNGTCLLANMGLQLNI---TQD--KVASVININPNTTNATGNCHSKTALLRLS 276
Query: 626 ---FPYGQLTFGFKQQPQESTVYLNYMAVEYNVSFPRAAQWTFSVQNSSLRDLQTPVGRS 796
Y F K ++ YL E NVS FS+ N++L P+G S
Sbjct: 277 GSNIKYLDFVFAVKN---DNRFYLK----EVNVSVYLVNGSVFSIANNNLSYWDAPLGSS 329
Query: 797 YSC-RNASIILSTAFHLDLLSLKLQAAQLPPTGNFGPSFSCPSD 925
Y C + ++ +S AF ++ +L++Q + G + + C +D
Sbjct: 330 YMCNKEQTVSVSGAFQINTFNLRVQPFSV-MEGKYSTAQDCSAD 372
>ref|XP_003360473.1| PREDICTED: lysosome-associated membrane glycoprotein 2 [Sus
scrofa].
Length = 411
Score = 48.9 bits (115), Expect = 6e-06
Identities = 43/164 (26%), Positives = 72/164 (43%), Gaps = 4/164 (2%)
Frame = +2
Query: 446 GDYTWTNGSQPCVQLQAQIQIRVLYPTQGGGEAWGISVLNPNKTKALGGCEGAHPHVRLS 625
G Y+ T+ + C+ +Q+ + TQ + + +NPN T A G C +RLS
Sbjct: 222 GSYSVTSSNGTCLLANMGLQLNI---TQD--KVASVININPNTTNATGNCHSKTALLRLS 276
Query: 626 ---FPYGQLTFGFKQQPQESTVYLNYMAVEYNVSFPRAAQWTFSVQNSSLRDLQTPVGRS 796
Y F K ++ YL E NVS FS+ N++L P+G S
Sbjct: 277 GSNIKYLDFVFAVKN---DNRFYLK----EVNVSVYLVNGSVFSIANNNLSYWDAPLGSS 329
Query: 797 YSC-RNASIILSTAFHLDLLSLKLQAAQLPPTGNFGPSFSCPSD 925
Y C + ++ +S AF ++ +L++Q + G + + C D
Sbjct: 330 YMCNKEQTVSVSGAFQINTFNLRVQPFSV-MEGKYSTAQECSLD 372
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 29,553,861
Number of extensions: 791417
Number of successful extensions: 3100
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 3090
Number of HSP's successfully gapped: 8
Length of query: 416
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 315
Effective length of database: 8,829,335
Effective search space: 2781240525
Effective search space used: 2781240525
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002810
(1248 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr12 656 0.0
gb|GL893964.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 640 0.0
Sscrofa_Chr08 264 1e-67
Sscrofa_Chr13 86 5e-14
>Sscrofa_Chr12
|| Length = 63588571
Score = 656 bits (331), Expect = 0.0
Identities = 331/331 (100%)
Strand = Plus / Minus
Query: 906 gtttctcttgtcccagtgaccaaaccatcctgctgcctctcatcattggactgattttcc 965
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55297317 gtttctcttgtcccagtgaccaaaccatcctgctgcctctcatcattggactgattttcc 55297258
Query: 966 ttggcctcctcatcctggtgcttgttaccttctgcatcatccggagacgcccacccgcct 1025
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55297257 ttggcctcctcatcctggtgcttgttaccttctgcatcatccggagacgcccacccgcct 55297198
Query: 1026 accagcctctgtgagcatctgttccaacacccagggcaccagagggtgcccttatttctc 1085
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55297197 accagcctctgtgagcatctgttccaacacccagggcaccagagggtgcccttatttctc 55297138
Query: 1086 cccactcaactgactctaagacaaagtttcgtctttctctgtcttgatgaacaaaagtag 1145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55297137 cccactcaactgactctaagacaaagtttcgtctttctctgtcttgatgaacaaaagtag 55297078
Query: 1146 agataatgcaatcgggaaagatgtttattaaatatgattgatttcccttcccctacttcc 1205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55297077 agataatgcaatcgggaaagatgtttattaaatatgattgatttcccttcccctacttcc 55297018
Query: 1206 agagagagaatagtaaacctgctcaaatctc 1236
|||||||||||||||||||||||||||||||
Sbjct: 55297017 agagagagaatagtaaacctgctcaaatctc 55296987
Score = 343 bits (173), Expect = 1e-91
Identities = 173/173 (100%)
Strand = Plus / Minus
Query: 735 agtggacattctcagttcagaattcatcccttcgagatctccaaacgcctgtgggccgaa 794
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55298024 agtggacattctcagttcagaattcatcccttcgagatctccaaacgcctgtgggccgaa 55297965
Query: 795 gctacagctgcagaaacgcaagcatcattctttcaacagctttccacctcgacctgctct 854
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55297964 gctacagctgcagaaacgcaagcatcattctttcaacagctttccacctcgacctgctct 55297905
Query: 855 ccctgaagctacaagctgctcagctgccccccacagggaactttggaccaagt 907
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55297904 ccctgaagctacaagctgctcagctgccccccacagggaactttggaccaagt 55297852
Score = 260 bits (131), Expect = 2e-66
Identities = 131/131 (100%)
Strand = Plus / Minus
Query: 1 ggctgagggattaggattgagagagcaggcagctgggacccacacagaacttagctggat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55299501 ggctgagggattaggattgagagagcaggcagctgggacccacacagaacttagctggat 55299442
Query: 61 tctgagtgcaggctgttctgacatgacgttggctgtgctcttcttaggggccctgctggg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55299441 tctgagtgcaggctgttctgacatgacgttggctgtgctcttcttaggggccctgctggg 55299382
Query: 121 actcctcgcag 131
|||||||||||
Sbjct: 55299381 actcctcgcag 55299371
Score = 252 bits (127), Expect = 4e-64
Identities = 127/127 (100%)
Strand = Plus / Minus
Query: 416 agtcctagcccgggctcccaggaggccataggagactacacttggacgaacggctcccag 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55299001 agtcctagcccgggctcccaggaggccataggagactacacttggacgaacggctcccag 55298942
Query: 476 ccctgcgtccagctccaagcccagattcagattcgagttctgtacccaacccagggtgga 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55298941 ccctgcgtccagctccaagcccagattcagattcgagttctgtacccaacccagggtgga 55298882
Query: 536 ggagagg 542
|||||||
Sbjct: 55298881 ggagagg 55298875
Score = 242 bits (122), Expect = 4e-61
Identities = 122/122 (100%)
Strand = Plus / Minus
Query: 540 aggcctggggcatctctgtactgaaccccaacaaaaccaaggccctggggggctgtgagg 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55298717 aggcctggggcatctctgtactgaaccccaacaaaaccaaggccctggggggctgtgagg 55298658
Query: 600 gtgcccatccccacgtgcgcctctcattcccctacggacagctcacctttggattcaagc 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55298657 gtgcccatccccacgtgcgcctctcattcccctacggacagctcacctttggattcaagc 55298598
Query: 660 ag 661
||
Sbjct: 55298597 ag 55298596
Score = 165 bits (83), Expect = 7e-38
Identities = 86/87 (98%)
Strand = Plus / Minus
Query: 130 agcccagggagctggggtcgactctcctcataaaaaatcagccactctgctgccatcctt 189
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 55299287 agcccagggagctggggtcgactatcctcataaaaaatcagccactctgctgccatcctt 55299228
Query: 190 cacggtgacacctacggctacagaaag 216
|||||||||||||||||||||||||||
Sbjct: 55299227 cacggtgacacctacggctacagaaag 55299201
Score = 151 bits (76), Expect = 1e-33
Identities = 76/76 (100%)
Strand = Plus / Minus
Query: 659 cagcagccacaggagagcactgtctacctgaactacatggctgtggagtacaacgtgtcc 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55298474 cagcagccacaggagagcactgtctacctgaactacatggctgtggagtacaacgtgtcc 55298415
Query: 719 ttcccccgggcagcgc 734
||||||||||||||||
Sbjct: 55298414 ttcccccgggcagcgc 55298399
Score = 119 bits (60), Expect = 4e-24
Identities = 60/60 (100%)
Strand = Plus / Minus
Query: 297 atcctgctaccaccaccagtcacggaaatgccacagttcatccaacaagcagcagcactg 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55299120 atcctgctaccaccaccagtcacggaaatgccacagttcatccaacaagcagcagcactg 55299061
>gb|GL893964.1| Sus scrofa unplaced genomic scaffold chrU_scaffold2677
Length = 22458
Score = 640 bits (323), Expect = 0.0
Identities = 329/331 (99%)
Strand = Plus / Plus
Query: 906 gtttctcttgtcccagtgaccaaaccatcctgctgcctctcatcattggactgattttcc 965
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15245 gtttctcttgtcccagtgaccaaaccatcctgctgcctctcatcattggactgattttcc 15304
Query: 966 ttggcctcctcatcctggtgcttgttaccttctgcatcatccggagacgcccacccgcct 1025
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15305 ttggcctcctcatcctggtgcttgttaccttctgcatcatccggagacgcccacccgcct 15364
Query: 1026 accagcctctgtgagcatctgttccaacacccagggcaccagagggtgcccttatttctc 1085
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15365 accagcctctgtgagcatctgttccaacacccagggcaccagagggtgcccttatttctc 15424
Query: 1086 cccactcaactgactctaagacaaagtttcgtctttctctgtcttgatgaacaaaagtag 1145
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 15425 cccactcaactgactctaagacaaagtttcttctttctctgtcttgatgaacaaaagtag 15484
Query: 1146 agataatgcaatcgggaaagatgtttattaaatatgattgatttcccttcccctacttcc 1205
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15485 agataatgcaatcgggagagatgtttattaaatatgattgatttcccttcccctacttcc 15544
Query: 1206 agagagagaatagtaaacctgctcaaatctc 1236
|||||||||||||||||||||||||||||||
Sbjct: 15545 agagagagaatagtaaacctgctcaaatctc 15575
Score = 270 bits (136), Expect = 2e-69
Identities = 136/136 (100%)
Strand = Plus / Plus
Query: 772 tctccaaacgcctgtgggccgaagctacagctgcagaaacgcaagcatcattctttcaac 831
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14575 tctccaaacgcctgtgggccgaagctacagctgcagaaacgcaagcatcattctttcaac 14634
Query: 832 agctttccacctcgacctgctctccctgaagctacaagctgctcagctgccccccacagg 891
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14635 agctttccacctcgacctgctctccctgaagctacaagctgctcagctgccccccacagg 14694
Query: 892 gaactttggaccaagt 907
||||||||||||||||
Sbjct: 14695 gaactttggaccaagt 14710
Score = 260 bits (131), Expect = 2e-66
Identities = 131/131 (100%)
Strand = Plus / Plus
Query: 1 ggctgagggattaggattgagagagcaggcagctgggacccacacagaacttagctggat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13217 ggctgagggattaggattgagagagcaggcagctgggacccacacagaacttagctggat 13276
Query: 61 tctgagtgcaggctgttctgacatgacgttggctgtgctcttcttaggggccctgctggg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13277 tctgagtgcaggctgttctgacatgacgttggctgtgctcttcttaggggccctgctggg 13336
Query: 121 actcctcgcag 131
|||||||||||
Sbjct: 13337 actcctcgcag 13347
Score = 252 bits (127), Expect = 4e-64
Identities = 127/127 (100%)
Strand = Plus / Plus
Query: 416 agtcctagcccgggctcccaggaggccataggagactacacttggacgaacggctcccag 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13691 agtcctagcccgggctcccaggaggccataggagactacacttggacgaacggctcccag 13750
Query: 476 ccctgcgtccagctccaagcccagattcagattcgagttctgtacccaacccagggtgga 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13751 ccctgcgtccagctccaagcccagattcagattcgagttctgtacccaacccagggtgga 13810
Query: 536 ggagagg 542
|||||||
Sbjct: 13811 ggagagg 13817
Score = 242 bits (122), Expect = 4e-61
Identities = 122/122 (100%)
Strand = Plus / Plus
Query: 540 aggcctggggcatctctgtactgaaccccaacaaaaccaaggccctggggggctgtgagg 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13974 aggcctggggcatctctgtactgaaccccaacaaaaccaaggccctggggggctgtgagg 14033
Query: 600 gtgcccatccccacgtgcgcctctcattcccctacggacagctcacctttggattcaagc 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14034 gtgcccatccccacgtgcgcctctcattcccctacggacagctcacctttggattcaagc 14093
Query: 660 ag 661
||
Sbjct: 14094 ag 14095
Score = 151 bits (76), Expect = 1e-33
Identities = 76/76 (100%)
Strand = Plus / Plus
Query: 659 cagcagccacaggagagcactgtctacctgaactacatggctgtggagtacaacgtgtcc 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14217 cagcagccacaggagagcactgtctacctgaactacatggctgtggagtacaacgtgtcc 14276
Query: 719 ttcccccgggcagcgc 734
||||||||||||||||
Sbjct: 14277 ttcccccgggcagcgc 14292
Score = 119 bits (60), Expect = 4e-24
Identities = 60/60 (100%)
Strand = Plus / Plus
Query: 297 atcctgctaccaccaccagtcacggaaatgccacagttcatccaacaagcagcagcactg 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13566 atcctgctaccaccaccagtcacggaaatgccacagttcatccaacaagcagcagcactg 13625
Score = 71.9 bits (36), Expect = 8e-10
Identities = 36/36 (100%)
Strand = Plus / Plus
Query: 181 gccatccttcacggtgacacctacggctacagaaag 216
||||||||||||||||||||||||||||||||||||
Sbjct: 13450 gccatccttcacggtgacacctacggctacagaaag 13485
>Sscrofa_Chr08
|| Length = 148491826
Score = 264 bits (133), Expect = 1e-67
Identities = 163/173 (94%)
Strand = Plus / Plus
Query: 735 agtggacattctcagttcagaattcatcccttcgagatctccaaacgcctgtgggccgaa 794
||||||||||||||||||||||||||||||||||||| |||||||| ||| |||||| |
Sbjct: 29673727 agtggacattctcagttcagaattcatcccttcgagagctccaaacccctctgggccaga 29673786
Query: 795 gctacagctgcagaaacgcaagcatcattctttcaacagctttccacctcgacctgctct 854
||||||| |||||||| |||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 29673787 gctacagttgcagaaatgcaagcatcattctttcaccagctttccacctcgacctgctct 29673846
Query: 855 ccctgaagctacaagctgctcagctgccccccacagggaactttggaccaagt 907
|||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 29673847 ccctgaagctacaagctgctcagctgccccccacaggggcctttggaccaagt 29673899
Score = 172 bits (87), Expect = 3e-40
Identities = 114/123 (92%)
Strand = Plus / Plus
Query: 416 agtcctagcccgggctcccaggaggccataggagactacacttggacgaacggctcccag 475
||||||||||| ||||| |||||| | ||||||||||||||||||||| |||||||||
Sbjct: 29672989 agtcctagcccatgctccaaggaggtgaaaggagactacacttggacgaatggctcccag 29673048
Query: 476 ccctgcgtccagctccaagcccagattcagattcgagttctgtacccaacccagggtgga 535
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 29673049 ccctgcgtccacctccaagcccagattcagattcgagttctatacccaacccagggtgga 29673108
Query: 536 gga 538
|||
Sbjct: 29673109 gga 29673111
Score = 163 bits (82), Expect = 3e-37
Identities = 112/122 (91%)
Strand = Plus / Plus
Query: 540 aggcctggggcatctctgtactgaaccccaacaaaaccaaggccctggggggctgtgagg 599
|||||||||||||||||||| ||||||||||||||||||||| || ||| |||||||| |
Sbjct: 29673289 aggcctggggcatctctgtagtgaaccccaacaaaaccaaggtccagggaggctgtgaag 29673348
Query: 600 gtgcccatccccacgtgcgcctctcattcccctacggacagctcacctttggattcaagc 659
|||||||| ||||| ||| ||||||||||||||| |||||||||| ||||||||||||||
Sbjct: 29673349 gtgcccatgcccacttgctcctctcattcccctatggacagctcagctttggattcaagc 29673408
Query: 660 ag 661
||
Sbjct: 29673409 ag 29673410
Score = 109 bits (55), Expect = 4e-21
Identities = 61/63 (96%)
Strand = Plus / Plus
Query: 154 tcctcataaaaaatcagccactctgctgccatccttcacggtgacacctacggctacaga 213
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct: 29672640 tcctcataaaaaatcagccactctgctaccatccttcactgtgacacctacggctacaga 29672699
Query: 214 aag 216
|||
Sbjct: 29672700 aag 29672702
Score = 93.7 bits (47), Expect = 2e-16
Identities = 87/99 (87%), Gaps = 1/99 (1%)
Strand = Plus / Plus
Query: 1058 agggcaccagagggtgcccttatttctccccactcaactgactctaagacaaagtttc-g 1116
||||| |||||||||||||| ||||||| |||||| |||||||| ||||||||| | |
Sbjct: 29674345 agggccccagagggtgccctcatttctctccactctactgactcagggacaaagttaccg 29674404
Query: 1117 tctttctctgtcttgatgaacaaaagtagagataatgca 1155
|| ||||||||||||||||||||||| ||||||| ||||
Sbjct: 29674405 tccttctctgtcttgatgaacaaaagcagagatagtgca 29674443
Score = 81.8 bits (41), Expect = 8e-13
Identities = 62/69 (89%)
Strand = Plus / Plus
Query: 663 agccacaggagagcactgtctacctgaactacatggctgtggagtacaacgtgtccttcc 722
|||||| | |||||||||||||||||||||| |||||| | ||| |||||||||||||||
Sbjct: 29673543 agccactgaagagcactgtctacctgaactatatggctattgagcacaacgtgtccttcc 29673602
Query: 723 cccgggcag 731
|| ||||||
Sbjct: 29673603 ccggggcag 29673611
Score = 77.8 bits (39), Expect = 1e-11
Identities = 102/123 (82%)
Strand = Plus / Plus
Query: 1 ggctgagggattaggattgagagagcaggcagctgggacccacacagaacttagctggat 60
|||||||||| ||| |||| ||||||| |||||| | ||||||||| ||| ||||
Sbjct: 29672403 ggctgagggaaaagggttgattgagcaggtagctggtagggacacagaacctagatggac 29672462
Query: 61 tctgagtgcaggctgttctgacatgacgttggctgtgctcttcttaggggccctgctggg 120
|||| ||| ||||||||| | ||||| |||||||||| |||||| ||||||||||||||
Sbjct: 29672463 tctgggtggaggctgttcagtcatgaggttggctgtgatcttctctggggccctgctggg 29672522
Query: 121 act 123
|||
Sbjct: 29672523 act 29672525
>Sscrofa_Chr13
|| Length = 218635234
Score = 85.7 bits (43), Expect = 5e-14
Identities = 106/127 (83%)
Strand = Plus / Plus
Query: 416 agtcctagcccgggctcccaggaggccataggagactacacttggacgaacggctcccag 475
|||||||| || ||||| ||||||| ||||||||||||| ||||| ||| | ||||||
Sbjct: 112168933 agtcctagtccaggctctaaggaggcaataggagactacaactggactaacagttcccag 112168992
Query: 476 ccctgcgtccagctccaagcccagattcagattcgagttctgtacccaacccagggtgga 535
|||| ||||||||||||||| ||||||||| |||||||||||||| |||| || |
Sbjct: 112168993 ccctatactcagctccaagcccaggttcagattcaagttctgtacccaatccagagtata 112169052
Query: 536 ggagagg 542
|||||||
Sbjct: 112169053 ggagagg 112169059
Score = 67.9 bits (34), Expect = 1e-08
Identities = 48/52 (92%), Gaps = 3/52 (5%)
Strand = Plus / Plus
Query: 674 agcactgtctacctgaactacatggctgtggagtacaacgtgtccttccccc 725
|||||||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct: 112169420 agcactgtctacctgaactatatggctgtggagtaca---tgtccttccccc 112169468
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 33,713,231
Number of extensions: 254
Number of successful extensions: 254
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 252
Number of HSP's successfully gapped: 25
Length of query: 1248
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1227
Effective length of database: 2,808,413,156
Effective search space: 3445922942412
Effective search space used: 3445922942412
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)