Animal-Genome cDNA 20110601C-002816


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002816
         (999 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001073063.1| 28S ribosomal protein S30, mitochondrial [Bo...   570   e-163

>ref|NP_001073063.1| 28S ribosomal protein S30, mitochondrial [Bos taurus].
          Length = 435

 Score =  570 bits (1470), Expect = e-163
 Identities = 278/325 (85%), Positives = 298/325 (91%), Gaps = 2/325 (0%)
 Frame = +3

Query: 18  MAAARCWRFPLRGAGLSLHTAAKAAVTAPEVTGPDVPATPVARYPPIVASLTAKSKAARQ 197
           MAA RCWRF LR  GLSLHTAA+A VTAPEVTG DV A PVARYPPIVASLTA SKAARQ
Sbjct: 1   MAATRCWRFVLRSPGLSLHTAAEATVTAPEVTGSDVKAAPVARYPPIVASLTADSKAARQ 60

Query: 198 RRVEQWQATVHAAKSVDEKLRILTKMQFMKYVVYPQTFALNADNWYQSFTKTVFLSGLPP 377
           RRVE+WQATVHAAKSVDEKLRILTKMQFMKYVVYPQTFALNAD WYQSFTKTVFLSGLPP
Sbjct: 61  RRVERWQATVHAAKSVDEKLRILTKMQFMKYVVYPQTFALNADRWYQSFTKTVFLSGLPP 120

Query: 378 TPAKLEPEPT--LDITALREAVCDCLLQEHFFLRRKKRAPVIQDREAIASPFLDQLVASL 551
             A+ + EP   +D+ ALR AVCDCLLQEHFFLRRKKRAP+ Q+R A+ASPFLDQLV SL
Sbjct: 121 PQAQPDREPAQVVDLAALRAAVCDCLLQEHFFLRRKKRAPIYQERYAVASPFLDQLVPSL 180

Query: 552 TGLLSVHNPVLAAAALDCKRPVHFFWLRGEEIIPRGHRKGRVDALRYQINDKPHNQIRIS 731
           TGLLS +NPVLAAAALDC RPVHF+WLRGEEIIP GHRKGRVDA+RYQINDKPHNQIRIS
Sbjct: 181 TGLLSAYNPVLAAAALDCNRPVHFYWLRGEEIIPGGHRKGRVDAVRYQINDKPHNQIRIS 240

Query: 732 RQLPEFVPLDYSIPIEVPVMSCKPDKLPLFKRQYENTIFIGSKTADPLCYGHTQFHLLPD 911
           RQLPEFVPLDYS+P+EVPV +CKPDKLPLFKRQYEN IFIG+KTADPLCYGHTQFHLLPD
Sbjct: 241 RQLPEFVPLDYSVPVEVPVKNCKPDKLPLFKRQYENAIFIGTKTADPLCYGHTQFHLLPD 300

Query: 912 KLKREKLLKQNCADQIEVVFKANAM 986
           KLKRE+LLKQNCADQIEV+F+ANA+
Sbjct: 301 KLKRERLLKQNCADQIEVIFRANAI 325


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 36,207,254
Number of extensions: 984692
Number of successful extensions: 3848
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3842
Number of HSP's successfully gapped: 1
Length of query: 333
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 230
Effective length of database: 14,273,310
Effective search space: 3282861300
Effective search space used: 3282861300
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002816
         (999 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_536480.2| PREDICTED: similar to Mitochondrial 28S ribosom...   546   e-156

>ref|XP_536480.2| PREDICTED: similar to Mitochondrial 28S ribosomal protein S30
           (S30mt) (MRP-S30) (Programmed cell death protein 9)
           [Canis familiaris].
          Length = 426

 Score =  546 bits (1408), Expect = e-156
 Identities = 269/323 (83%), Positives = 291/323 (90%)
 Frame = +3

Query: 18  MAAARCWRFPLRGAGLSLHTAAKAAVTAPEVTGPDVPATPVARYPPIVASLTAKSKAARQ 197
           MAAARC R  LRG G SLHT A+AAV+APEVT PDV A PVARYPPIVASLTAKSKAARQ
Sbjct: 1   MAAARCSRLALRGRGSSLHTVAQAAVSAPEVTAPDVTAAPVARYPPIVASLTAKSKAARQ 60

Query: 198 RRVEQWQATVHAAKSVDEKLRILTKMQFMKYVVYPQTFALNADNWYQSFTKTVFLSGLPP 377
           RRVE+WQA+VHAA+SVDEKLRILTKMQF KYVVYPQTFALNAD WYQ FTKT FLSGLPP
Sbjct: 61  RRVERWQASVHAAESVDEKLRILTKMQFTKYVVYPQTFALNADRWYQGFTKTAFLSGLPP 120

Query: 378 TPAKLEPEPTLDITALREAVCDCLLQEHFFLRRKKRAPVIQDREAIASPFLDQLVASLTG 557
            PA+  P P LD+ ALR A CD LLQEHF+LRRK+R PV  DREA+ASPFLDQLVA+L G
Sbjct: 121 -PAEPAPAPALDLEALRAAACDGLLQEHFYLRRKRRPPVYGDREALASPFLDQLVAALVG 179

Query: 558 LLSVHNPVLAAAALDCKRPVHFFWLRGEEIIPRGHRKGRVDALRYQINDKPHNQIRISRQ 737
           LLS  NPVLA AALD KRPVHF+WLRGEEII +GHRKGRVDALRYQINDKPHNQIRIS+Q
Sbjct: 180 LLSAQNPVLATAALDNKRPVHFYWLRGEEIISKGHRKGRVDALRYQINDKPHNQIRISKQ 239

Query: 738 LPEFVPLDYSIPIEVPVMSCKPDKLPLFKRQYENTIFIGSKTADPLCYGHTQFHLLPDKL 917
           LPEFVPLDYSIPIE+PVM+CKPDKLPLFKRQ+ENT+FIGSKTADP CYGHTQFHLLPDKL
Sbjct: 240 LPEFVPLDYSIPIEIPVMTCKPDKLPLFKRQFENTVFIGSKTADPYCYGHTQFHLLPDKL 299

Query: 918 KREKLLKQNCADQIEVVFKANAM 986
           KRE+LLK+NCADQIEVVF+ANA+
Sbjct: 300 KRERLLKRNCADQIEVVFRANAI 322


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 37,850,045
Number of extensions: 1019942
Number of successful extensions: 4011
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4000
Number of HSP's successfully gapped: 1
Length of query: 333
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 230
Effective length of database: 15,440,896
Effective search space: 3551406080
Effective search space used: 3551406080
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002816
         (999 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_057724.2| 28S ribosomal protein S30, mitochondrial [Homo ...   516   e-146

>ref|NP_057724.2| 28S ribosomal protein S30, mitochondrial [Homo sapiens].
          Length = 439

 Score =  516 bits (1328), Expect = e-146
 Identities = 251/329 (76%), Positives = 283/329 (86%), Gaps = 6/329 (1%)
 Frame = +3

Query: 18  MAAARCWRFPLRGAGLSLHTAAKAAVTAPEVTGPDVPATPVARYPPIVASLTAKSKAARQ 197
           MAAARCWR  LRG  LSLHTAA AA TA E T  DV ATPVARYPPIVAS+TA SKAAR 
Sbjct: 1   MAAARCWRPLLRGPRLSLHTAANAAATATETTCQDVAATPVARYPPIVASMTADSKAARL 60

Query: 198 RRVEQWQATVHAAKSVDEKLRILTKMQFMKYVVYPQTFALNADNWYQSFTKTVFLSGLPP 377
           RR+E+WQATVHAA+SVDEKLRILTKMQFMKY+VYPQTFALNAD WYQ FTKTVFLSGLPP
Sbjct: 61  RRIERWQATVHAAESVDEKLRILTKMQFMKYMVYPQTFALNADRWYQYFTKTVFLSGLPP 120

Query: 378 TPAKLEPEP------TLDITALREAVCDCLLQEHFFLRRKKRAPVIQDREAIASPFLDQL 539
            PA+ EPEP       LD+ ALR   CDCLLQEHF+LRR++R    ++ E I+ PFLDQL
Sbjct: 121 PPAEPEPEPEPEPEPALDLAALRAVACDCLLQEHFYLRRRRRVHRYEESEVISLPFLDQL 180

Query: 540 VASLTGLLSVHNPVLAAAALDCKRPVHFFWLRGEEIIPRGHRKGRVDALRYQINDKPHNQ 719
           V++L GLLS HNP LAAAALD + PVHF+W+RGEEIIPRGHR+GR+D LRYQI+DKP+NQ
Sbjct: 181 VSTLVGLLSPHNPALAAAALDYRCPVHFYWVRGEEIIPRGHRRGRIDDLRYQIDDKPNNQ 240

Query: 720 IRISRQLPEFVPLDYSIPIEVPVMSCKPDKLPLFKRQYENTIFIGSKTADPLCYGHTQFH 899
           IRIS+QL EFVPLDYS+PIE+P + CKPDKLPLFKRQYEN IF+GSKTADP CYGHTQFH
Sbjct: 241 IRISKQLAEFVPLDYSVPIEIPTIKCKPDKLPLFKRQYENHIFVGSKTADPCCYGHTQFH 300

Query: 900 LLPDKLKREKLLKQNCADQIEVVFKANAM 986
           LLPDKL+RE+LL+QNCADQIEVVF+ANA+
Sbjct: 301 LLPDKLRRERLLRQNCADQIEVVFRANAI 329


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 37,029,133
Number of extensions: 992158
Number of successful extensions: 3667
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3656
Number of HSP's successfully gapped: 1
Length of query: 333
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 230
Effective length of database: 14,901,872
Effective search space: 3427430560
Effective search space used: 3427430560
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002816
         (999 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_067531.1| 28S ribosomal protein S30, mitochondrial [Mus m...   481   e-136

>ref|NP_067531.1| 28S ribosomal protein S30, mitochondrial [Mus musculus].
          Length = 442

 Score =  481 bits (1238), Expect = e-136
 Identities = 232/323 (71%), Positives = 271/323 (83%)
 Frame = +3

Query: 18  MAAARCWRFPLRGAGLSLHTAAKAAVTAPEVTGPDVPATPVARYPPIVASLTAKSKAARQ 197
           MAAAR W+   RG GLS + AAKA+ TAPEV   +V ATPVARYPPIVAS+TA SKAARQ
Sbjct: 1   MAAARYWKLVPRGRGLSQNAAAKASATAPEVRDLEVVATPVARYPPIVASMTADSKAARQ 60

Query: 198 RRVEQWQATVHAAKSVDEKLRILTKMQFMKYVVYPQTFALNADNWYQSFTKTVFLSGLPP 377
           RRV++WQATVHAA SVDEK+RILTKMQF KYVV+PQ  ALNAD WYQSFTKTVF+SGLPP
Sbjct: 61  RRVQRWQATVHAAPSVDEKIRILTKMQFKKYVVHPQISALNADRWYQSFTKTVFVSGLPP 120

Query: 378 TPAKLEPEPTLDITALREAVCDCLLQEHFFLRRKKRAPVIQDREAIASPFLDQLVASLTG 557
            PA   P P+LD+ ALR AVCDC+LQE  ++RR++   +   R+A+AS  LDQ+V +L  
Sbjct: 121 APALSPPPPSLDLAALRAAVCDCILQEQVYVRRRRPRSLFDRRQALASSILDQVVRTLVN 180

Query: 558 LLSVHNPVLAAAALDCKRPVHFFWLRGEEIIPRGHRKGRVDALRYQINDKPHNQIRISRQ 737
           LL+  NPVL+ AALDCKR V F+WLRGEE IP GHRKG +DALRYQINDKPHNQIRIS+Q
Sbjct: 181 LLAPLNPVLSTAALDCKRSVDFYWLRGEERIPAGHRKGHIDALRYQINDKPHNQIRISKQ 240

Query: 738 LPEFVPLDYSIPIEVPVMSCKPDKLPLFKRQYENTIFIGSKTADPLCYGHTQFHLLPDKL 917
           LPEFVPLDYSIP E+PVM CKPDKLPLF+RQYEN+IF GSKTADP CYGHTQFHL+PD+L
Sbjct: 241 LPEFVPLDYSIPTEIPVMKCKPDKLPLFRRQYENSIFTGSKTADPCCYGHTQFHLIPDRL 300

Query: 918 KREKLLKQNCADQIEVVFKANAM 986
           KRE+L++QN A+Q+E VF+ANA+
Sbjct: 301 KRERLIRQNQAEQVEAVFRANAI 323


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 31,432,529
Number of extensions: 826982
Number of successful extensions: 2968
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2962
Number of HSP's successfully gapped: 1
Length of query: 333
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 231
Effective length of database: 12,553,887
Effective search space: 2899947897
Effective search space used: 2899947897
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002816
         (999 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_003133973.2| PREDICTED: 28S ribosomal protein S30, mitoch...   557   e-159

>ref|XP_003133973.2| PREDICTED: 28S ribosomal protein S30, mitochondrial-like [Sus
           scrofa].
          Length = 457

 Score =  557 bits (1435), Expect = e-159
 Identities = 277/287 (96%), Positives = 279/287 (97%)
 Frame = +3

Query: 126 PATPVARYPPIVASLTAKSKAARQRRVEQWQATVHAAKSVDEKLRILTKMQFMKYVVYPQ 305
           PATPVARYPPIVASLTAKSKAARQRRVEQWQATVHAAKSVDEKLRILTKMQFMKYVVYPQ
Sbjct: 67  PATPVARYPPIVASLTAKSKAARQRRVEQWQATVHAAKSVDEKLRILTKMQFMKYVVYPQ 126

Query: 306 TFALNADNWYQSFTKTVFLSGLPPTPAKLEPEPTLDITALREAVCDCLLQEHFFLRRKKR 485
           TFALNADNWYQSFTKTVFLSGLPPTPA        DITALREAVCDCLLQEHFFLRRKKR
Sbjct: 127 TFALNADNWYQSFTKTVFLSGLPPTPAXX------DITALREAVCDCLLQEHFFLRRKKR 180

Query: 486 APVIQDREAIASPFLDQLVASLTGLLSVHNPVLAAAALDCKRPVHFFWLRGEEIIPRGHR 665
           APVIQDREAIASPFLDQLVASLTGLLSVHNPVLAAAALDCKRPVHFFWLRGEEIIPRGHR
Sbjct: 181 APVIQDREAIASPFLDQLVASLTGLLSVHNPVLAAAALDCKRPVHFFWLRGEEIIPRGHR 240

Query: 666 KGRVDALRYQINDKPHNQIRISRQLPEFVPLDYSIPIEVPVMSCKPDKLPLFKRQYENTI 845
           KGRVDALRYQINDKPHNQIRISRQLPEFVPLDYSIPIEVPVMSCKPDKLPLFKRQYENTI
Sbjct: 241 KGRVDALRYQINDKPHNQIRISRQLPEFVPLDYSIPIEVPVMSCKPDKLPLFKRQYENTI 300

Query: 846 FIGSKTADPLCYGHTQFHLLPDKLKREKLLKQNCADQIEVVFKANAM 986
           FIGSKTADPLCYGHTQFHLLPDKLKREKLLKQNCADQIEVVF+ANA+
Sbjct: 301 FIGSKTADPLCYGHTQFHLLPDKLKREKLLKQNCADQIEVVFRANAI 347


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 23,321,965
Number of extensions: 634385
Number of successful extensions: 2552
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2548
Number of HSP's successfully gapped: 1
Length of query: 333
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 234
Effective length of database: 8,879,129
Effective search space: 2077716186
Effective search space used: 2077716186
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002816
         (999 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|JH118670.1| Sus scrofa unplaced genomic scaffold ChrUScaf1591      527   e-147
Sscrofa_Chr15                                                         131   8e-28

>gb|JH118670.1| Sus scrofa unplaced genomic scaffold ChrUScaf1591
          Length = 183348

 Score =  527 bits (266), Expect = e-147
 Identities = 266/266 (100%)
 Strand = Plus / Minus

                                                                          
Query: 125    cccggcaaccccagtcgcgcgctacccgcctatcgtagcctccctgacggccaaaagcaa 184
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121862 cccggcaaccccagtcgcgcgctacccgcctatcgtagcctccctgacggccaaaagcaa 121803

                                                                          
Query: 185    ggcggcacggcagcggcgagtggagcaatggcaggcgacagtgcacgcggccaagtcagt 244
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121802 ggcggcacggcagcggcgagtggagcaatggcaggcgacagtgcacgcggccaagtcagt 121743

                                                                          
Query: 245    ggacgagaagctgcgaatcctcaccaagatgcagttcatgaagtacgtagtttatccgca 304
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121742 ggacgagaagctgcgaatcctcaccaagatgcagttcatgaagtacgtagtttatccgca 121683

                                                                          
Query: 305    gaccttcgccctgaacgccgataactggtaccagagcttcaccaagacagtgttcctgtc 364
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121682 gaccttcgccctgaacgccgataactggtaccagagcttcaccaagacagtgttcctgtc 121623

                                        
Query: 365    gggcctgccgccaacgcccgccaagc 390
              ||||||||||||||||||||||||||
Sbjct: 121622 gggcctgccgccaacgcccgccaagc 121597



 Score =  381 bits (192), Expect = e-103
 Identities = 192/192 (100%)
 Strand = Plus / Minus

                                                                          
Query: 409    tggacataacggctctgcgcgaggccgtttgtgactgcctcctgcaggagcatttcttcc 468
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121496 tggacataacggctctgcgcgaggccgtttgtgactgcctcctgcaggagcatttcttcc 121437

                                                                          
Query: 469    tgaggcgcaagaagcgcgcgcctgtcatccaggaccgtgaggccatcgcttcgcccttcc 528
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121436 tgaggcgcaagaagcgcgcgcctgtcatccaggaccgtgaggccatcgcttcgcccttcc 121377

                                                                          
Query: 529    tggaccaattggtagcctctctcacgggcctgctcagcgtgcacaacccggtcctggctg 588
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121376 tggaccaattggtagcctctctcacgggcctgctcagcgtgcacaacccggtcctggctg 121317

                          
Query: 589    ccgccgccctgg 600
              ||||||||||||
Sbjct: 121316 ccgccgccctgg 121305



 Score =  291 bits (147), Expect = 4e-76
 Identities = 147/147 (100%)
 Strand = Plus / Minus

                                                                          
Query: 600    gattgtaaacgcccagttcactttttctggttgcgtggtgaagaaattattcctcgtggt 659
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119997 gattgtaaacgcccagttcactttttctggttgcgtggtgaagaaattattcctcgtggt 119938

                                                                          
Query: 660    catcggaagggtcgagttgatgctttgcgataccaaataaatgataaaccgcacaaccag 719
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119937 catcggaagggtcgagttgatgctttgcgataccaaataaatgataaaccgcacaaccag 119878

                                         
Query: 720    attcgaatatccagacaactccctgag 746
              |||||||||||||||||||||||||||
Sbjct: 119877 attcgaatatccagacaactccctgag 119851



 Score =  272 bits (137), Expect = 3e-70
 Identities = 147/149 (98%), Gaps = 1/149 (0%)
 Strand = Plus / Minus

                                                                          
Query: 852    ggttcaaagacagcagatcctctctgttatggacatacccagtttcatctgctacctgac 911
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 117724 ggttcaaagacagcagatcctctctgttatggacatacccagtttcatctgctacctgac 117665

                                                                          
Query: 912    aaattaaaaagggaaaagcttttgaaacaaaactgtgctgatcagatcgaagttgttttt 971
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 117664 aaattaaaaagggaaaagcttttgaaacaaaactgtgctgatcagatcgaagttgttttt 117605

                                           
Query: 972    aaagctaatgcta-tgcaagcctttttgc 999
              | ||||||||||| |||||||||||||||
Sbjct: 117604 agagctaatgctattgcaagcctttttgc 117576



 Score =  218 bits (110), Expect = 4e-54
 Identities = 110/110 (100%)
 Strand = Plus / Minus

                                                                          
Query: 745    agtttgtgccactggattattctatacctatagaagtccctgttatgagttgtaagccag 804
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119307 agtttgtgccactggattattctatacctatagaagtccctgttatgagttgtaagccag 119248

                                                                
Query: 805    acaaacttccattattcaaacggcaatatgaaaataccatatttatcggt 854
              ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119247 acaaacttccattattcaaacggcaatatgaaaataccatatttatcggt 119198


>Sscrofa_Chr15 
||          Length = 157681621

 Score =  131 bits (66), Expect = 8e-28
 Identities = 126/146 (86%)
 Strand = Plus / Plus

                                                                            
Query: 600      gattgtaaacgcccagttcactttttctggttgcgtggtgaagaaattattcctcgtggt 659
                |||||||||| |||||||||||| |  ||||||| |||||||||||||||||||  ||||
Sbjct: 69278015 gattgtaaacacccagttcacttctattggttgcatggtgaagaaattattccttatggt 69278074

                                                                            
Query: 660      catcggaagggtcgagttgatgctttgcgataccaaataaatgataaaccgcacaaccag 719
                ||| |||  |||| | ||  |||||||||||||||||||||||||||||| | |||  ||
Sbjct: 69278075 cattggagaggtcaaatttgtgctttgcgataccaaataaatgataaaccacgcaagaag 69278134

                                          
Query: 720      attcgaatatccagacaactccctga 745
                ||||||||||||| ||||| ||||||
Sbjct: 69278135 attcgaatatccaaacaaccccctga 69278160



 Score = 63.9 bits (32), Expect = 2e-07
 Identities = 74/88 (84%)
 Strand = Plus / Plus

                                                                            
Query: 234      gccaagtcagtggacgagaagctgcgaatcctcaccaagatgcagttcatgaagtacgta 293
                ||||||| | |||| ||||||||  ||||| ||||||||||| ||||||||||| |||||
Sbjct: 69276290 gccaagtaactggatgagaagcttggaatcttcaccaagatgtagttcatgaagcacgta 69276349

                                            
Query: 294      gtttatccgcagaccttcgccctgaacg 321
                ||| | |   |||||||| |||||||||
Sbjct: 69276350 gttaacctcaagaccttctccctgaacg 69276377



 Score = 60.0 bits (30), Expect = 2e-06
 Identities = 66/78 (84%)
 Strand = Plus / Plus

                                                                            
Query: 519      tcgcccttcctggaccaattggtagcctctctcacgggcctgctcagcgtgcacaacccg 578
                |||||||||  ||||||  |||||||||| ||||| ||||||||||| | || | |||||
Sbjct: 69276578 tcgcccttctgggaccagctggtagcctccctcactggcctgctcagagcgcgcgacccg 69276637

                                  
Query: 579      gtcctggctgccgccgcc 596
                | |||||||||| |||||
Sbjct: 69276638 gccctggctgccaccgcc 69276655


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 25,840,882
Number of extensions: 144
Number of successful extensions: 144
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 144
Number of HSP's successfully gapped: 8
Length of query: 999
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 978
Effective length of database: 2,808,413,156
Effective search space: 2746628066568
Effective search space used: 2746628066568
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)