Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002816
(999 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001073063.1| 28S ribosomal protein S30, mitochondrial [Bo... 570 e-163
>ref|NP_001073063.1| 28S ribosomal protein S30, mitochondrial [Bos taurus].
Length = 435
Score = 570 bits (1470), Expect = e-163
Identities = 278/325 (85%), Positives = 298/325 (91%), Gaps = 2/325 (0%)
Frame = +3
Query: 18 MAAARCWRFPLRGAGLSLHTAAKAAVTAPEVTGPDVPATPVARYPPIVASLTAKSKAARQ 197
MAA RCWRF LR GLSLHTAA+A VTAPEVTG DV A PVARYPPIVASLTA SKAARQ
Sbjct: 1 MAATRCWRFVLRSPGLSLHTAAEATVTAPEVTGSDVKAAPVARYPPIVASLTADSKAARQ 60
Query: 198 RRVEQWQATVHAAKSVDEKLRILTKMQFMKYVVYPQTFALNADNWYQSFTKTVFLSGLPP 377
RRVE+WQATVHAAKSVDEKLRILTKMQFMKYVVYPQTFALNAD WYQSFTKTVFLSGLPP
Sbjct: 61 RRVERWQATVHAAKSVDEKLRILTKMQFMKYVVYPQTFALNADRWYQSFTKTVFLSGLPP 120
Query: 378 TPAKLEPEPT--LDITALREAVCDCLLQEHFFLRRKKRAPVIQDREAIASPFLDQLVASL 551
A+ + EP +D+ ALR AVCDCLLQEHFFLRRKKRAP+ Q+R A+ASPFLDQLV SL
Sbjct: 121 PQAQPDREPAQVVDLAALRAAVCDCLLQEHFFLRRKKRAPIYQERYAVASPFLDQLVPSL 180
Query: 552 TGLLSVHNPVLAAAALDCKRPVHFFWLRGEEIIPRGHRKGRVDALRYQINDKPHNQIRIS 731
TGLLS +NPVLAAAALDC RPVHF+WLRGEEIIP GHRKGRVDA+RYQINDKPHNQIRIS
Sbjct: 181 TGLLSAYNPVLAAAALDCNRPVHFYWLRGEEIIPGGHRKGRVDAVRYQINDKPHNQIRIS 240
Query: 732 RQLPEFVPLDYSIPIEVPVMSCKPDKLPLFKRQYENTIFIGSKTADPLCYGHTQFHLLPD 911
RQLPEFVPLDYS+P+EVPV +CKPDKLPLFKRQYEN IFIG+KTADPLCYGHTQFHLLPD
Sbjct: 241 RQLPEFVPLDYSVPVEVPVKNCKPDKLPLFKRQYENAIFIGTKTADPLCYGHTQFHLLPD 300
Query: 912 KLKREKLLKQNCADQIEVVFKANAM 986
KLKRE+LLKQNCADQIEV+F+ANA+
Sbjct: 301 KLKRERLLKQNCADQIEVIFRANAI 325
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 36,207,254
Number of extensions: 984692
Number of successful extensions: 3848
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3842
Number of HSP's successfully gapped: 1
Length of query: 333
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 230
Effective length of database: 14,273,310
Effective search space: 3282861300
Effective search space used: 3282861300
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002816
(999 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_536480.2| PREDICTED: similar to Mitochondrial 28S ribosom... 546 e-156
>ref|XP_536480.2| PREDICTED: similar to Mitochondrial 28S ribosomal protein S30
(S30mt) (MRP-S30) (Programmed cell death protein 9)
[Canis familiaris].
Length = 426
Score = 546 bits (1408), Expect = e-156
Identities = 269/323 (83%), Positives = 291/323 (90%)
Frame = +3
Query: 18 MAAARCWRFPLRGAGLSLHTAAKAAVTAPEVTGPDVPATPVARYPPIVASLTAKSKAARQ 197
MAAARC R LRG G SLHT A+AAV+APEVT PDV A PVARYPPIVASLTAKSKAARQ
Sbjct: 1 MAAARCSRLALRGRGSSLHTVAQAAVSAPEVTAPDVTAAPVARYPPIVASLTAKSKAARQ 60
Query: 198 RRVEQWQATVHAAKSVDEKLRILTKMQFMKYVVYPQTFALNADNWYQSFTKTVFLSGLPP 377
RRVE+WQA+VHAA+SVDEKLRILTKMQF KYVVYPQTFALNAD WYQ FTKT FLSGLPP
Sbjct: 61 RRVERWQASVHAAESVDEKLRILTKMQFTKYVVYPQTFALNADRWYQGFTKTAFLSGLPP 120
Query: 378 TPAKLEPEPTLDITALREAVCDCLLQEHFFLRRKKRAPVIQDREAIASPFLDQLVASLTG 557
PA+ P P LD+ ALR A CD LLQEHF+LRRK+R PV DREA+ASPFLDQLVA+L G
Sbjct: 121 -PAEPAPAPALDLEALRAAACDGLLQEHFYLRRKRRPPVYGDREALASPFLDQLVAALVG 179
Query: 558 LLSVHNPVLAAAALDCKRPVHFFWLRGEEIIPRGHRKGRVDALRYQINDKPHNQIRISRQ 737
LLS NPVLA AALD KRPVHF+WLRGEEII +GHRKGRVDALRYQINDKPHNQIRIS+Q
Sbjct: 180 LLSAQNPVLATAALDNKRPVHFYWLRGEEIISKGHRKGRVDALRYQINDKPHNQIRISKQ 239
Query: 738 LPEFVPLDYSIPIEVPVMSCKPDKLPLFKRQYENTIFIGSKTADPLCYGHTQFHLLPDKL 917
LPEFVPLDYSIPIE+PVM+CKPDKLPLFKRQ+ENT+FIGSKTADP CYGHTQFHLLPDKL
Sbjct: 240 LPEFVPLDYSIPIEIPVMTCKPDKLPLFKRQFENTVFIGSKTADPYCYGHTQFHLLPDKL 299
Query: 918 KREKLLKQNCADQIEVVFKANAM 986
KRE+LLK+NCADQIEVVF+ANA+
Sbjct: 300 KRERLLKRNCADQIEVVFRANAI 322
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 37,850,045
Number of extensions: 1019942
Number of successful extensions: 4011
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4000
Number of HSP's successfully gapped: 1
Length of query: 333
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 230
Effective length of database: 15,440,896
Effective search space: 3551406080
Effective search space used: 3551406080
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002816
(999 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_057724.2| 28S ribosomal protein S30, mitochondrial [Homo ... 516 e-146
>ref|NP_057724.2| 28S ribosomal protein S30, mitochondrial [Homo sapiens].
Length = 439
Score = 516 bits (1328), Expect = e-146
Identities = 251/329 (76%), Positives = 283/329 (86%), Gaps = 6/329 (1%)
Frame = +3
Query: 18 MAAARCWRFPLRGAGLSLHTAAKAAVTAPEVTGPDVPATPVARYPPIVASLTAKSKAARQ 197
MAAARCWR LRG LSLHTAA AA TA E T DV ATPVARYPPIVAS+TA SKAAR
Sbjct: 1 MAAARCWRPLLRGPRLSLHTAANAAATATETTCQDVAATPVARYPPIVASMTADSKAARL 60
Query: 198 RRVEQWQATVHAAKSVDEKLRILTKMQFMKYVVYPQTFALNADNWYQSFTKTVFLSGLPP 377
RR+E+WQATVHAA+SVDEKLRILTKMQFMKY+VYPQTFALNAD WYQ FTKTVFLSGLPP
Sbjct: 61 RRIERWQATVHAAESVDEKLRILTKMQFMKYMVYPQTFALNADRWYQYFTKTVFLSGLPP 120
Query: 378 TPAKLEPEP------TLDITALREAVCDCLLQEHFFLRRKKRAPVIQDREAIASPFLDQL 539
PA+ EPEP LD+ ALR CDCLLQEHF+LRR++R ++ E I+ PFLDQL
Sbjct: 121 PPAEPEPEPEPEPEPALDLAALRAVACDCLLQEHFYLRRRRRVHRYEESEVISLPFLDQL 180
Query: 540 VASLTGLLSVHNPVLAAAALDCKRPVHFFWLRGEEIIPRGHRKGRVDALRYQINDKPHNQ 719
V++L GLLS HNP LAAAALD + PVHF+W+RGEEIIPRGHR+GR+D LRYQI+DKP+NQ
Sbjct: 181 VSTLVGLLSPHNPALAAAALDYRCPVHFYWVRGEEIIPRGHRRGRIDDLRYQIDDKPNNQ 240
Query: 720 IRISRQLPEFVPLDYSIPIEVPVMSCKPDKLPLFKRQYENTIFIGSKTADPLCYGHTQFH 899
IRIS+QL EFVPLDYS+PIE+P + CKPDKLPLFKRQYEN IF+GSKTADP CYGHTQFH
Sbjct: 241 IRISKQLAEFVPLDYSVPIEIPTIKCKPDKLPLFKRQYENHIFVGSKTADPCCYGHTQFH 300
Query: 900 LLPDKLKREKLLKQNCADQIEVVFKANAM 986
LLPDKL+RE+LL+QNCADQIEVVF+ANA+
Sbjct: 301 LLPDKLRRERLLRQNCADQIEVVFRANAI 329
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 37,029,133
Number of extensions: 992158
Number of successful extensions: 3667
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3656
Number of HSP's successfully gapped: 1
Length of query: 333
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 230
Effective length of database: 14,901,872
Effective search space: 3427430560
Effective search space used: 3427430560
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002816
(999 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_067531.1| 28S ribosomal protein S30, mitochondrial [Mus m... 481 e-136
>ref|NP_067531.1| 28S ribosomal protein S30, mitochondrial [Mus musculus].
Length = 442
Score = 481 bits (1238), Expect = e-136
Identities = 232/323 (71%), Positives = 271/323 (83%)
Frame = +3
Query: 18 MAAARCWRFPLRGAGLSLHTAAKAAVTAPEVTGPDVPATPVARYPPIVASLTAKSKAARQ 197
MAAAR W+ RG GLS + AAKA+ TAPEV +V ATPVARYPPIVAS+TA SKAARQ
Sbjct: 1 MAAARYWKLVPRGRGLSQNAAAKASATAPEVRDLEVVATPVARYPPIVASMTADSKAARQ 60
Query: 198 RRVEQWQATVHAAKSVDEKLRILTKMQFMKYVVYPQTFALNADNWYQSFTKTVFLSGLPP 377
RRV++WQATVHAA SVDEK+RILTKMQF KYVV+PQ ALNAD WYQSFTKTVF+SGLPP
Sbjct: 61 RRVQRWQATVHAAPSVDEKIRILTKMQFKKYVVHPQISALNADRWYQSFTKTVFVSGLPP 120
Query: 378 TPAKLEPEPTLDITALREAVCDCLLQEHFFLRRKKRAPVIQDREAIASPFLDQLVASLTG 557
PA P P+LD+ ALR AVCDC+LQE ++RR++ + R+A+AS LDQ+V +L
Sbjct: 121 APALSPPPPSLDLAALRAAVCDCILQEQVYVRRRRPRSLFDRRQALASSILDQVVRTLVN 180
Query: 558 LLSVHNPVLAAAALDCKRPVHFFWLRGEEIIPRGHRKGRVDALRYQINDKPHNQIRISRQ 737
LL+ NPVL+ AALDCKR V F+WLRGEE IP GHRKG +DALRYQINDKPHNQIRIS+Q
Sbjct: 181 LLAPLNPVLSTAALDCKRSVDFYWLRGEERIPAGHRKGHIDALRYQINDKPHNQIRISKQ 240
Query: 738 LPEFVPLDYSIPIEVPVMSCKPDKLPLFKRQYENTIFIGSKTADPLCYGHTQFHLLPDKL 917
LPEFVPLDYSIP E+PVM CKPDKLPLF+RQYEN+IF GSKTADP CYGHTQFHL+PD+L
Sbjct: 241 LPEFVPLDYSIPTEIPVMKCKPDKLPLFRRQYENSIFTGSKTADPCCYGHTQFHLIPDRL 300
Query: 918 KREKLLKQNCADQIEVVFKANAM 986
KRE+L++QN A+Q+E VF+ANA+
Sbjct: 301 KRERLIRQNQAEQVEAVFRANAI 323
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 31,432,529
Number of extensions: 826982
Number of successful extensions: 2968
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2962
Number of HSP's successfully gapped: 1
Length of query: 333
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 231
Effective length of database: 12,553,887
Effective search space: 2899947897
Effective search space used: 2899947897
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002816
(999 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003133973.2| PREDICTED: 28S ribosomal protein S30, mitoch... 557 e-159
>ref|XP_003133973.2| PREDICTED: 28S ribosomal protein S30, mitochondrial-like [Sus
scrofa].
Length = 457
Score = 557 bits (1435), Expect = e-159
Identities = 277/287 (96%), Positives = 279/287 (97%)
Frame = +3
Query: 126 PATPVARYPPIVASLTAKSKAARQRRVEQWQATVHAAKSVDEKLRILTKMQFMKYVVYPQ 305
PATPVARYPPIVASLTAKSKAARQRRVEQWQATVHAAKSVDEKLRILTKMQFMKYVVYPQ
Sbjct: 67 PATPVARYPPIVASLTAKSKAARQRRVEQWQATVHAAKSVDEKLRILTKMQFMKYVVYPQ 126
Query: 306 TFALNADNWYQSFTKTVFLSGLPPTPAKLEPEPTLDITALREAVCDCLLQEHFFLRRKKR 485
TFALNADNWYQSFTKTVFLSGLPPTPA DITALREAVCDCLLQEHFFLRRKKR
Sbjct: 127 TFALNADNWYQSFTKTVFLSGLPPTPAXX------DITALREAVCDCLLQEHFFLRRKKR 180
Query: 486 APVIQDREAIASPFLDQLVASLTGLLSVHNPVLAAAALDCKRPVHFFWLRGEEIIPRGHR 665
APVIQDREAIASPFLDQLVASLTGLLSVHNPVLAAAALDCKRPVHFFWLRGEEIIPRGHR
Sbjct: 181 APVIQDREAIASPFLDQLVASLTGLLSVHNPVLAAAALDCKRPVHFFWLRGEEIIPRGHR 240
Query: 666 KGRVDALRYQINDKPHNQIRISRQLPEFVPLDYSIPIEVPVMSCKPDKLPLFKRQYENTI 845
KGRVDALRYQINDKPHNQIRISRQLPEFVPLDYSIPIEVPVMSCKPDKLPLFKRQYENTI
Sbjct: 241 KGRVDALRYQINDKPHNQIRISRQLPEFVPLDYSIPIEVPVMSCKPDKLPLFKRQYENTI 300
Query: 846 FIGSKTADPLCYGHTQFHLLPDKLKREKLLKQNCADQIEVVFKANAM 986
FIGSKTADPLCYGHTQFHLLPDKLKREKLLKQNCADQIEVVF+ANA+
Sbjct: 301 FIGSKTADPLCYGHTQFHLLPDKLKREKLLKQNCADQIEVVFRANAI 347
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 23,321,965
Number of extensions: 634385
Number of successful extensions: 2552
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2548
Number of HSP's successfully gapped: 1
Length of query: 333
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 234
Effective length of database: 8,879,129
Effective search space: 2077716186
Effective search space used: 2077716186
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002816
(999 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|JH118670.1| Sus scrofa unplaced genomic scaffold ChrUScaf1591 527 e-147
Sscrofa_Chr15 131 8e-28
>gb|JH118670.1| Sus scrofa unplaced genomic scaffold ChrUScaf1591
Length = 183348
Score = 527 bits (266), Expect = e-147
Identities = 266/266 (100%)
Strand = Plus / Minus
Query: 125 cccggcaaccccagtcgcgcgctacccgcctatcgtagcctccctgacggccaaaagcaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121862 cccggcaaccccagtcgcgcgctacccgcctatcgtagcctccctgacggccaaaagcaa 121803
Query: 185 ggcggcacggcagcggcgagtggagcaatggcaggcgacagtgcacgcggccaagtcagt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121802 ggcggcacggcagcggcgagtggagcaatggcaggcgacagtgcacgcggccaagtcagt 121743
Query: 245 ggacgagaagctgcgaatcctcaccaagatgcagttcatgaagtacgtagtttatccgca 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121742 ggacgagaagctgcgaatcctcaccaagatgcagttcatgaagtacgtagtttatccgca 121683
Query: 305 gaccttcgccctgaacgccgataactggtaccagagcttcaccaagacagtgttcctgtc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121682 gaccttcgccctgaacgccgataactggtaccagagcttcaccaagacagtgttcctgtc 121623
Query: 365 gggcctgccgccaacgcccgccaagc 390
||||||||||||||||||||||||||
Sbjct: 121622 gggcctgccgccaacgcccgccaagc 121597
Score = 381 bits (192), Expect = e-103
Identities = 192/192 (100%)
Strand = Plus / Minus
Query: 409 tggacataacggctctgcgcgaggccgtttgtgactgcctcctgcaggagcatttcttcc 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121496 tggacataacggctctgcgcgaggccgtttgtgactgcctcctgcaggagcatttcttcc 121437
Query: 469 tgaggcgcaagaagcgcgcgcctgtcatccaggaccgtgaggccatcgcttcgcccttcc 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121436 tgaggcgcaagaagcgcgcgcctgtcatccaggaccgtgaggccatcgcttcgcccttcc 121377
Query: 529 tggaccaattggtagcctctctcacgggcctgctcagcgtgcacaacccggtcctggctg 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121376 tggaccaattggtagcctctctcacgggcctgctcagcgtgcacaacccggtcctggctg 121317
Query: 589 ccgccgccctgg 600
||||||||||||
Sbjct: 121316 ccgccgccctgg 121305
Score = 291 bits (147), Expect = 4e-76
Identities = 147/147 (100%)
Strand = Plus / Minus
Query: 600 gattgtaaacgcccagttcactttttctggttgcgtggtgaagaaattattcctcgtggt 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119997 gattgtaaacgcccagttcactttttctggttgcgtggtgaagaaattattcctcgtggt 119938
Query: 660 catcggaagggtcgagttgatgctttgcgataccaaataaatgataaaccgcacaaccag 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119937 catcggaagggtcgagttgatgctttgcgataccaaataaatgataaaccgcacaaccag 119878
Query: 720 attcgaatatccagacaactccctgag 746
|||||||||||||||||||||||||||
Sbjct: 119877 attcgaatatccagacaactccctgag 119851
Score = 272 bits (137), Expect = 3e-70
Identities = 147/149 (98%), Gaps = 1/149 (0%)
Strand = Plus / Minus
Query: 852 ggttcaaagacagcagatcctctctgttatggacatacccagtttcatctgctacctgac 911
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 117724 ggttcaaagacagcagatcctctctgttatggacatacccagtttcatctgctacctgac 117665
Query: 912 aaattaaaaagggaaaagcttttgaaacaaaactgtgctgatcagatcgaagttgttttt 971
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 117664 aaattaaaaagggaaaagcttttgaaacaaaactgtgctgatcagatcgaagttgttttt 117605
Query: 972 aaagctaatgcta-tgcaagcctttttgc 999
| ||||||||||| |||||||||||||||
Sbjct: 117604 agagctaatgctattgcaagcctttttgc 117576
Score = 218 bits (110), Expect = 4e-54
Identities = 110/110 (100%)
Strand = Plus / Minus
Query: 745 agtttgtgccactggattattctatacctatagaagtccctgttatgagttgtaagccag 804
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119307 agtttgtgccactggattattctatacctatagaagtccctgttatgagttgtaagccag 119248
Query: 805 acaaacttccattattcaaacggcaatatgaaaataccatatttatcggt 854
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119247 acaaacttccattattcaaacggcaatatgaaaataccatatttatcggt 119198
>Sscrofa_Chr15
|| Length = 157681621
Score = 131 bits (66), Expect = 8e-28
Identities = 126/146 (86%)
Strand = Plus / Plus
Query: 600 gattgtaaacgcccagttcactttttctggttgcgtggtgaagaaattattcctcgtggt 659
|||||||||| |||||||||||| | ||||||| ||||||||||||||||||| ||||
Sbjct: 69278015 gattgtaaacacccagttcacttctattggttgcatggtgaagaaattattccttatggt 69278074
Query: 660 catcggaagggtcgagttgatgctttgcgataccaaataaatgataaaccgcacaaccag 719
||| ||| |||| | || |||||||||||||||||||||||||||||| | ||| ||
Sbjct: 69278075 cattggagaggtcaaatttgtgctttgcgataccaaataaatgataaaccacgcaagaag 69278134
Query: 720 attcgaatatccagacaactccctga 745
||||||||||||| ||||| ||||||
Sbjct: 69278135 attcgaatatccaaacaaccccctga 69278160
Score = 63.9 bits (32), Expect = 2e-07
Identities = 74/88 (84%)
Strand = Plus / Plus
Query: 234 gccaagtcagtggacgagaagctgcgaatcctcaccaagatgcagttcatgaagtacgta 293
||||||| | |||| |||||||| ||||| ||||||||||| ||||||||||| |||||
Sbjct: 69276290 gccaagtaactggatgagaagcttggaatcttcaccaagatgtagttcatgaagcacgta 69276349
Query: 294 gtttatccgcagaccttcgccctgaacg 321
||| | | |||||||| |||||||||
Sbjct: 69276350 gttaacctcaagaccttctccctgaacg 69276377
Score = 60.0 bits (30), Expect = 2e-06
Identities = 66/78 (84%)
Strand = Plus / Plus
Query: 519 tcgcccttcctggaccaattggtagcctctctcacgggcctgctcagcgtgcacaacccg 578
||||||||| |||||| |||||||||| ||||| ||||||||||| | || | |||||
Sbjct: 69276578 tcgcccttctgggaccagctggtagcctccctcactggcctgctcagagcgcgcgacccg 69276637
Query: 579 gtcctggctgccgccgcc 596
| |||||||||| |||||
Sbjct: 69276638 gccctggctgccaccgcc 69276655
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 25,840,882
Number of extensions: 144
Number of successful extensions: 144
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 144
Number of HSP's successfully gapped: 8
Length of query: 999
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 978
Effective length of database: 2,808,413,156
Effective search space: 2746628066568
Effective search space used: 2746628066568
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)