Animal-Genome cDNA 20110601C-002819


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002819
         (1058 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001029707.1| NAD(P)H dehydrogenase [quinone] 1 [Bos tauru...   485   e-145
Alignment   gi|NP_001029495.1| ribosyldihydronicotinamide dehydrogenase [Bo...   239   2e-63

>ref|NP_001029707.1| NAD(P)H dehydrogenase [quinone] 1 [Bos taurus].
          Length = 274

 Score =  485 bits (1249), Expect(2) = e-145
 Identities = 234/248 (94%), Positives = 242/248 (97%)
 Frame = +1

Query: 136 MAVRKALIILAHSEKTSFNYAMKEAAVEALKRRGWEVAVSDLYAMNFNPVISRKDITGKL 315
           MAVRKALI+LAHSE+TSFNYAMKEAA+EALKR+GWEV VSDLYAMNFNPVISRKDITGKL
Sbjct: 1   MAVRKALIVLAHSERTSFNYAMKEAAIEALKRKGWEVTVSDLYAMNFNPVISRKDITGKL 60

Query: 316 KDPGNFQYPAETALAYKEGRLSPDIVAEQKKVEAADLVIFQFPLQWFGVPAILKGWFERV 495
           KDPGNFQYPAET LAYKEGRLSPDIVAEQKK+EAADLVIFQFPLQWFGVPAILKGWFERV
Sbjct: 61  KDPGNFQYPAETVLAYKEGRLSPDIVAEQKKLEAADLVIFQFPLQWFGVPAILKGWFERV 120

Query: 496 LIGEFAYTYAAMYDKGPFRNKKAVLSITTGGSGSMYSLQGIHGDMNILLWPIQSGTLHFC 675
           LIGEFAY YAAMYDKGPFRNKKAVLSITTGGSGSMYSL GIHGDMNI+LWPIQSGTLHFC
Sbjct: 121 LIGEFAYKYAAMYDKGPFRNKKAVLSITTGGSGSMYSLHGIHGDMNIILWPIQSGTLHFC 180

Query: 676 GFQVLEPQLTYSIGHTPEDARIQILEEWKKRLENIWDETPLYFAPSSLFDLNFQAGFLMK 855
           GFQVLEPQLTYSIGHTPEDAR+QILE WKKRLENIWDE PLYFAPSSLFDLNFQAGFLMK
Sbjct: 181 GFQVLEPQLTYSIGHTPEDARVQILEGWKKRLENIWDEMPLYFAPSSLFDLNFQAGFLMK 240

Query: 856 KQVQDEQK 879
           K+VQDEQK
Sbjct: 241 KEVQDEQK 248



 Score = 50.8 bits (120), Expect(2) = e-145
 Identities = 23/27 (85%), Positives = 24/27 (88%)
 Frame = +3

Query: 876 KSNKFGLSVGHHLGKSIPTDNQVKARK 956
           KS KFGLSVGHHLGKSIP DNQ+KA K
Sbjct: 248 KSKKFGLSVGHHLGKSIPMDNQIKAIK 274


>ref|NP_001029495.1| ribosyldihydronicotinamide dehydrogenase [Bos taurus].
          Length = 231

 Score =  239 bits (611), Expect = 2e-63
 Identities = 114/229 (49%), Positives = 154/229 (67%)
 Frame = +1

Query: 136 MAVRKALIILAHSEKTSFNYAMKEAAVEALKRRGWEVAVSDLYAMNFNPVISRKDITGKL 315
           MA +K LI+ AH E  S N ++K+ AV  L ++G  V VSDLYAMNF P  + KDITG L
Sbjct: 1   MAGKKVLIVYAHQEPRSLNGSLKDVAVAELSQQGCSVIVSDLYAMNFEPRATGKDITGTL 60

Query: 316 KDPGNFQYPAETALAYKEGRLSPDIVAEQKKVEAADLVIFQFPLQWFGVPAILKGWFERV 495
            +PG F Y  E   AYK+  LS DI+ EQKK++ A+LVIFQFPL WF VPA+LKGW +RV
Sbjct: 61  SNPGFFNYGVEAHKAYKKQSLSSDIIEEQKKLQEANLVIFQFPLYWFSVPAVLKGWMDRV 120

Query: 496 LIGEFAYTYAAMYDKGPFRNKKAVLSITTGGSGSMYSLQGIHGDMNILLWPIQSGTLHFC 675
           L   FA+ +   YD G  + K A+LS+TTGG+ SM+S  G++GD    LWP+Q GTLHFC
Sbjct: 121 LCQGFAFDFPGSYDDGFLKGKLAILSLTTGGTASMFSKTGVNGDFRYFLWPLQHGTLHFC 180

Query: 676 GFQVLEPQLTYSIGHTPEDARIQILEEWKKRLENIWDETPLYFAPSSLF 822
           GF+VL PQ+++      E+ R +++  W +RL+ +W+E P+  +P   F
Sbjct: 181 GFKVLAPQISFGPEMASEEERKRMVASWAQRLKTLWEEEPIQCSPPWYF 229


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 41,621,999
Number of extensions: 1159155
Number of successful extensions: 5825
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5703
Number of HSP's successfully gapped: 3
Length of query: 352
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 249
Effective length of database: 14,273,310
Effective search space: 3554054190
Effective search space used: 3554054190
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002819
         (1058 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_853617.1| PREDICTED: similar to NAD(P)H dehydrogenase [qu...   464   e-141
Alignment   gi|XP_848388.1| PREDICTED: similar to NAD(P)H dehydrogenase, qu...   227   2e-59
Alignment   gi|XP_856036.1| PREDICTED: similar to NAD(P)H dehydrogenase, qu...   165   8e-41
Alignment   gi|XP_856074.1| PREDICTED: similar to NAD(P)H dehydrogenase, qu...   144   1e-34

>ref|XP_853617.1| PREDICTED: similar to NAD(P)H dehydrogenase [quinone] 1 (Quinone
           reductase 1) (QR1) (DT-diaphorase) (DTD) (Azoreductase)
           (Phylloquinone reductase) (Menadione reductase) [Canis
           familiaris].
          Length = 433

 Score =  464 bits (1194), Expect(3) = e-141
 Identities = 224/247 (90%), Positives = 235/247 (95%)
 Frame = +1

Query: 139 AVRKALIILAHSEKTSFNYAMKEAAVEALKRRGWEVAVSDLYAMNFNPVISRKDITGKLK 318
           A RKALI+LAH+EK SFN+AMKEAAVEAL+  GWEV VSDLYAMNFNPVISR+D+TG  K
Sbjct: 161 AARKALIVLAHAEKASFNHAMKEAAVEALEATGWEVTVSDLYAMNFNPVISRRDVTGTPK 220

Query: 319 DPGNFQYPAETALAYKEGRLSPDIVAEQKKVEAADLVIFQFPLQWFGVPAILKGWFERVL 498
           DPGNFQYPAE ALAYKEGRLSPDIVAEQKK+EAADLVIFQFPLQWFGVPAILKGWFERVL
Sbjct: 221 DPGNFQYPAEAALAYKEGRLSPDIVAEQKKLEAADLVIFQFPLQWFGVPAILKGWFERVL 280

Query: 499 IGEFAYTYAAMYDKGPFRNKKAVLSITTGGSGSMYSLQGIHGDMNILLWPIQSGTLHFCG 678
           IGEFAYTYAAMYDKGPFRNKK VLSITTGGSGSMYSLQGIHGDMNI+LWPIQSGTLHFCG
Sbjct: 281 IGEFAYTYAAMYDKGPFRNKKTVLSITTGGSGSMYSLQGIHGDMNIILWPIQSGTLHFCG 340

Query: 679 FQVLEPQLTYSIGHTPEDARIQILEEWKKRLENIWDETPLYFAPSSLFDLNFQAGFLMKK 858
           FQVLEPQLTYSIGHTP D RIQILE WKKRLENIW+ETPLYFAPSSLFDLNFQAGFLMKK
Sbjct: 341 FQVLEPQLTYSIGHTPMDVRIQILEGWKKRLENIWNETPLYFAPSSLFDLNFQAGFLMKK 400

Query: 859 QVQDEQK 879
           +VQD+QK
Sbjct: 401 EVQDKQK 407



 Score = 55.1 bits (131), Expect(3) = e-141
 Identities = 24/27 (88%), Positives = 26/27 (96%)
 Frame = +3

Query: 876 KSNKFGLSVGHHLGKSIPTDNQVKARK 956
           K+ KFGLSVGHHLGKSIPTDNQ+KARK
Sbjct: 407 KNEKFGLSVGHHLGKSIPTDNQIKARK 433



 Score = 23.1 bits (48), Expect(3) = e-141
 Identities = 12/32 (37%), Positives = 14/32 (43%)
 Frame = +2

Query: 17  RAARVTPPRSQPEDLQPPAPSQLESARQPAAR 112
           RA R  PP+ Q     P   +     R PAAR
Sbjct: 132 RAFRAEPPKPQTRSAHPEVGAASLLPRVPAAR 163


>ref|XP_848388.1| PREDICTED: similar to NAD(P)H dehydrogenase, quinone 2 isoform 2
           [Canis familiaris].
          Length = 231

 Score =  227 bits (578), Expect = 2e-59
 Identities = 110/229 (48%), Positives = 148/229 (64%)
 Frame = +1

Query: 136 MAVRKALIILAHSEKTSFNYAMKEAAVEALKRRGWEVAVSDLYAMNFNPVISRKDITGKL 315
           MA +K LI+ AH E  SFN ++K+ AV+ L R+G  + VSDLYAM+F P  +RKD+ G L
Sbjct: 1   MAGKKVLIVYAHQEPKSFNGSLKKVAVDELSRQGCAITVSDLYAMDFEPRATRKDVIGAL 60

Query: 316 KDPGNFQYPAETALAYKEGRLSPDIVAEQKKVEAADLVIFQFPLQWFGVPAILKGWFERV 495
            +P  F Y  E   A+K+  L+ DI  EQKKV+ ADLVIFQFPL WF +PAILKGW +RV
Sbjct: 61  SNPELFNYGMEAYEAFKKRSLASDITDEQKKVQEADLVIFQFPLYWFSMPAILKGWMDRV 120

Query: 496 LIGEFAYTYAAMYDKGPFRNKKAVLSITTGGSGSMYSLQGIHGDMNILLWPIQSGTLHFC 675
           L   FA+     YD G  + K A++S+TTGG+  MYS  G+ GD    LW +Q G LHFC
Sbjct: 121 LCQGFAFDIPGFYDSGFLKGKLALVSLTTGGTAEMYSRSGVSGDFRYFLWALQHGALHFC 180

Query: 676 GFQVLEPQLTYSIGHTPEDARIQILEEWKKRLENIWDETPLYFAPSSLF 822
           GF+VL PQ++++     E+ R  ++  W +RL  IW+E P+  +P   F
Sbjct: 181 GFKVLAPQISFAPEIASEEERKAMVTSWAQRLRTIWEEEPIDCSPPWYF 229


>ref|XP_856036.1| PREDICTED: similar to NAD(P)H dehydrogenase, quinone 2 isoform 3
           [Canis familiaris].
          Length = 193

 Score =  165 bits (417), Expect = 8e-41
 Identities = 90/229 (39%), Positives = 124/229 (54%)
 Frame = +1

Query: 136 MAVRKALIILAHSEKTSFNYAMKEAAVEALKRRGWEVAVSDLYAMNFNPVISRKDITGKL 315
           MA +K LI+ AH E  SFN ++K+ AV+ L R+G  + VSDLYAM+F P  +RKD+ G L
Sbjct: 1   MAGKKVLIVYAHQEPKSFNGSLKKVAVDELSRQGCAITVSDLYAMDFEPRATRKDVIGAL 60

Query: 316 KDPGNFQYPAETALAYKEGRLSPDIVAEQKKVEAADLVIFQFPLQWFGVPAILKGWFERV 495
            +P  F Y  E   A+K+  L+ DI  EQKKV+ ADLVIFQ                   
Sbjct: 61  SNPELFNYGMEAYEAFKKRSLASDITDEQKKVQEADLVIFQ------------------- 101

Query: 496 LIGEFAYTYAAMYDKGPFRNKKAVLSITTGGSGSMYSLQGIHGDMNILLWPIQSGTLHFC 675
                               K A++S+TTGG+  MYS  G+ GD    LW +Q G LHFC
Sbjct: 102 -------------------GKLALVSLTTGGTAEMYSRSGVSGDFRYFLWALQHGALHFC 142

Query: 676 GFQVLEPQLTYSIGHTPEDARIQILEEWKKRLENIWDETPLYFAPSSLF 822
           GF+VL PQ++++     E+ R  ++  W +RL  IW+E P+  +P   F
Sbjct: 143 GFKVLAPQISFAPEIASEEERKAMVTSWAQRLRTIWEEEPIDCSPPWYF 191


>ref|XP_856074.1| PREDICTED: similar to NAD(P)H dehydrogenase, quinone 2 isoform 4
           [Canis familiaris].
          Length = 146

 Score =  144 bits (364), Expect = 1e-34
 Identities = 72/136 (52%), Positives = 91/136 (66%)
 Frame = +1

Query: 136 MAVRKALIILAHSEKTSFNYAMKEAAVEALKRRGWEVAVSDLYAMNFNPVISRKDITGKL 315
           MA +K LI+ AH E  SFN ++K+ AV+ L R+G  + VSDLYAM+F P  +RKD+ G L
Sbjct: 1   MAGKKVLIVYAHQEPKSFNGSLKKVAVDELSRQGCAITVSDLYAMDFEPRATRKDVIGAL 60

Query: 316 KDPGNFQYPAETALAYKEGRLSPDIVAEQKKVEAADLVIFQFPLQWFGVPAILKGWFERV 495
            +P  F Y  E   A+K+  L+ DI  EQKKV+ ADLVIFQFPL WF +PAILKGW +RV
Sbjct: 61  SNPELFNYGMEAYEAFKKRSLASDITDEQKKVQEADLVIFQFPLYWFSMPAILKGWMDRV 120

Query: 496 LIGEFAYTYAAMYDKG 543
           L   FA+     YD G
Sbjct: 121 LCQGFAFDIPGFYDSG 136


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 43,384,117
Number of extensions: 1181462
Number of successful extensions: 5903
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 5849
Number of HSP's successfully gapped: 7
Length of query: 352
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 248
Effective length of database: 15,407,560
Effective search space: 3821074880
Effective search space used: 3821074880
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002819
         (1058 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_000894.1| NAD(P)H dehydrogenase [quinone] 1 isoform a [Ho...   464   e-140
Alignment   gi|NP_001020604.1| NAD(P)H dehydrogenase [quinone] 1 isoform b ...   382   e-116
Alignment   gi|NP_001020605.1| NAD(P)H dehydrogenase [quinone] 1 isoform c ...   365   e-111
Alignment   gi|NP_000895.2| ribosyldihydronicotinamide dehydrogenase [quino...   234   1e-61

>ref|NP_000894.1| NAD(P)H dehydrogenase [quinone] 1 isoform a [Homo sapiens].
          Length = 274

 Score =  464 bits (1194), Expect(2) = e-140
 Identities = 222/248 (89%), Positives = 235/248 (94%)
 Frame = +1

Query: 136 MAVRKALIILAHSEKTSFNYAMKEAAVEALKRRGWEVAVSDLYAMNFNPVISRKDITGKL 315
           M  R+ALI+LAHSE+TSFNYAMKEAA  ALK++GWEV  SDLYAMNFNP+ISRKDITGKL
Sbjct: 1   MVGRRALIVLAHSERTSFNYAMKEAAAAALKKKGWEVVESDLYAMNFNPIISRKDITGKL 60

Query: 316 KDPGNFQYPAETALAYKEGRLSPDIVAEQKKVEAADLVIFQFPLQWFGVPAILKGWFERV 495
           KDP NFQYPAE+ LAYKEG LSPDIVAEQKK+EAADLVIFQFPLQWFGVPAILKGWFERV
Sbjct: 61  KDPANFQYPAESVLAYKEGHLSPDIVAEQKKLEAADLVIFQFPLQWFGVPAILKGWFERV 120

Query: 496 LIGEFAYTYAAMYDKGPFRNKKAVLSITTGGSGSMYSLQGIHGDMNILLWPIQSGTLHFC 675
            IGEFAYTYAAMYDKGPFR+KKAVLSITTGGSGSMYSLQGIHGDMN++LWPIQSG LHFC
Sbjct: 121 FIGEFAYTYAAMYDKGPFRSKKAVLSITTGGSGSMYSLQGIHGDMNVILWPIQSGILHFC 180

Query: 676 GFQVLEPQLTYSIGHTPEDARIQILEEWKKRLENIWDETPLYFAPSSLFDLNFQAGFLMK 855
           GFQVLEPQLTYSIGHTP DARIQILE WKKRLENIWDETPLYFAPSSLFDLNFQAGFLMK
Sbjct: 181 GFQVLEPQLTYSIGHTPADARIQILEGWKKRLENIWDETPLYFAPSSLFDLNFQAGFLMK 240

Query: 856 KQVQDEQK 879
           K+VQDE+K
Sbjct: 241 KEVQDEEK 248



 Score = 55.1 bits (131), Expect(2) = e-140
 Identities = 24/27 (88%), Positives = 26/27 (96%)
 Frame = +3

Query: 876 KSNKFGLSVGHHLGKSIPTDNQVKARK 956
           K+ KFGLSVGHHLGKSIPTDNQ+KARK
Sbjct: 248 KNKKFGLSVGHHLGKSIPTDNQIKARK 274


>ref|NP_001020604.1| NAD(P)H dehydrogenase [quinone] 1 isoform b [Homo sapiens].
          Length = 240

 Score =  382 bits (980), Expect(2) = e-116
 Identities = 191/248 (77%), Positives = 201/248 (81%)
 Frame = +1

Query: 136 MAVRKALIILAHSEKTSFNYAMKEAAVEALKRRGWEVAVSDLYAMNFNPVISRKDITGKL 315
           M  R+ALI+LAHSE+TSFNYAMKEAA  ALK++GWEV  SDLYAMNFNP+ISRKDITGKL
Sbjct: 1   MVGRRALIVLAHSERTSFNYAMKEAAAAALKKKGWEVVESDLYAMNFNPIISRKDITGKL 60

Query: 316 KDPGNFQYPAETALAYKEGRLSPDIVAEQKKVEAADLVIFQFPLQWFGVPAILKGWFERV 495
           KDP NFQYPAE+ LAYKEG LSPDIVAEQKK+EAADLVIFQFPLQWFGVPAILKGWFERV
Sbjct: 61  KDPANFQYPAESVLAYKEGHLSPDIVAEQKKLEAADLVIFQFPLQWFGVPAILKGWFERV 120

Query: 496 LIGEFAYTYAAMYDKGPFRNKKAVLSITTGGSGSMYSLQGIHGDMNILLWPIQSGTLHFC 675
            IGEFAYTYAAMYDKGPFR                                  SG LHFC
Sbjct: 121 FIGEFAYTYAAMYDKGPFR----------------------------------SGILHFC 146

Query: 676 GFQVLEPQLTYSIGHTPEDARIQILEEWKKRLENIWDETPLYFAPSSLFDLNFQAGFLMK 855
           GFQVLEPQLTYSIGHTP DARIQILE WKKRLENIWDETPLYFAPSSLFDLNFQAGFLMK
Sbjct: 147 GFQVLEPQLTYSIGHTPADARIQILEGWKKRLENIWDETPLYFAPSSLFDLNFQAGFLMK 206

Query: 856 KQVQDEQK 879
           K+VQDE+K
Sbjct: 207 KEVQDEEK 214



 Score = 55.1 bits (131), Expect(2) = e-116
 Identities = 24/27 (88%), Positives = 26/27 (96%)
 Frame = +3

Query: 876 KSNKFGLSVGHHLGKSIPTDNQVKARK 956
           K+ KFGLSVGHHLGKSIPTDNQ+KARK
Sbjct: 214 KNKKFGLSVGHHLGKSIPTDNQIKARK 240


>ref|NP_001020605.1| NAD(P)H dehydrogenase [quinone] 1 isoform c [Homo sapiens].
          Length = 236

 Score =  365 bits (936), Expect(2) = e-111
 Identities = 185/248 (74%), Positives = 198/248 (79%)
 Frame = +1

Query: 136 MAVRKALIILAHSEKTSFNYAMKEAAVEALKRRGWEVAVSDLYAMNFNPVISRKDITGKL 315
           M  R+ALI+LAHSE+TSFNYAMKEAA  ALK++GWEV  SDLYAMNFNP+ISRKDITGKL
Sbjct: 1   MVGRRALIVLAHSERTSFNYAMKEAAAAALKKKGWEVVESDLYAMNFNPIISRKDITGKL 60

Query: 316 KDPGNFQYPAETALAYKEGRLSPDIVAEQKKVEAADLVIFQFPLQWFGVPAILKGWFERV 495
           KDP NFQYPAE+ LAYKEG LSPDIVAEQKK+EAADLVIFQ                   
Sbjct: 61  KDPANFQYPAESVLAYKEGHLSPDIVAEQKKLEAADLVIFQ------------------- 101

Query: 496 LIGEFAYTYAAMYDKGPFRNKKAVLSITTGGSGSMYSLQGIHGDMNILLWPIQSGTLHFC 675
                              +KKAVLSITTGGSGSMYSLQGIHGDMN++LWPIQSG LHFC
Sbjct: 102 -------------------SKKAVLSITTGGSGSMYSLQGIHGDMNVILWPIQSGILHFC 142

Query: 676 GFQVLEPQLTYSIGHTPEDARIQILEEWKKRLENIWDETPLYFAPSSLFDLNFQAGFLMK 855
           GFQVLEPQLTYSIGHTP DARIQILE WKKRLENIWDETPLYFAPSSLFDLNFQAGFLMK
Sbjct: 143 GFQVLEPQLTYSIGHTPADARIQILEGWKKRLENIWDETPLYFAPSSLFDLNFQAGFLMK 202

Query: 856 KQVQDEQK 879
           K+VQDE+K
Sbjct: 203 KEVQDEEK 210



 Score = 55.1 bits (131), Expect(2) = e-111
 Identities = 24/27 (88%), Positives = 26/27 (96%)
 Frame = +3

Query: 876 KSNKFGLSVGHHLGKSIPTDNQVKARK 956
           K+ KFGLSVGHHLGKSIPTDNQ+KARK
Sbjct: 210 KNKKFGLSVGHHLGKSIPTDNQIKARK 236


>ref|NP_000895.2| ribosyldihydronicotinamide dehydrogenase [quinone] [Homo sapiens].
          Length = 231

 Score =  234 bits (597), Expect = 1e-61
 Identities = 115/221 (52%), Positives = 146/221 (66%)
 Frame = +1

Query: 136 MAVRKALIILAHSEKTSFNYAMKEAAVEALKRRGWEVAVSDLYAMNFNPVISRKDITGKL 315
           MA +K LI+ AH E  SFN ++K  AV+ L R+G  V VSDLYAMN  P  + KDITG L
Sbjct: 1   MAGKKVLIVYAHQEPKSFNGSLKNVAVDELSRQGCTVTVSDLYAMNLEPRATDKDITGTL 60

Query: 316 KDPGNFQYPAETALAYKEGRLSPDIVAEQKKVEAADLVIFQFPLQWFGVPAILKGWFERV 495
            +P  F Y  ET  AYK+  L+ DI  EQKKV  ADLVIFQFPL WF VPAILKGW +RV
Sbjct: 61  SNPEVFNYGVETHEAYKQRSLASDITDEQKKVREADLVIFQFPLYWFSVPAILKGWMDRV 120

Query: 496 LIGEFAYTYAAMYDKGPFRNKKAVLSITTGGSGSMYSLQGIHGDMNILLWPIQSGTLHFC 675
           L   FA+     YD G  + K A+LS+TTGG+  MY+  G++GD    LWP+Q GTLHFC
Sbjct: 121 LCQGFAFDIPGFYDSGLLQGKLALLSVTTGGTAEMYTKTGVNGDSRYFLWPLQHGTLHFC 180

Query: 676 GFQVLEPQLTYSIGHTPEDARIQILEEWKKRLENIWDETPL 798
           GF+VL PQ++++     E+ R  ++  W +RL+ IW E P+
Sbjct: 181 GFKVLAPQISFAPEIASEEERKGMVAAWSQRLQTIWKEEPI 221


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 42,571,238
Number of extensions: 1157326
Number of successful extensions: 5538
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 5452
Number of HSP's successfully gapped: 9
Length of query: 352
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 248
Effective length of database: 14,868,908
Effective search space: 3687489184
Effective search space used: 3687489184
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002819
         (1058 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_032732.3| NAD(P)H dehydrogenase [quinone] 1 [Mus musculus].    445   e-135
Alignment   gi|NP_001156714.1| ribosyldihydronicotinamide dehydrogenase [qu...   239   3e-63
Alignment   gi|NP_001156713.1| ribosyldihydronicotinamide dehydrogenase [qu...   239   3e-63
Alignment   gi|NP_064678.1| ribosyldihydronicotinamide dehydrogenase [quino...   239   3e-63
Alignment   gi|NP_001156711.1| ribosyldihydronicotinamide dehydrogenase [qu...   196   3e-50

>ref|NP_032732.3| NAD(P)H dehydrogenase [quinone] 1 [Mus musculus].
          Length = 274

 Score =  445 bits (1145), Expect(2) = e-135
 Identities = 211/248 (85%), Positives = 231/248 (93%)
 Frame = +1

Query: 136 MAVRKALIILAHSEKTSFNYAMKEAAVEALKRRGWEVAVSDLYAMNFNPVISRKDITGKL 315
           MA R+ALI+LAHSEKTSFNYAMKEAAVEALK+RGWEV  SDLYAMNFNP+ISR DITG+L
Sbjct: 1   MAARRALIVLAHSEKTSFNYAMKEAAVEALKKRGWEVLESDLYAMNFNPIISRNDITGEL 60

Query: 316 KDPGNFQYPAETALAYKEGRLSPDIVAEQKKVEAADLVIFQFPLQWFGVPAILKGWFERV 495
           KD  NFQYP+E++LAYKEGRLSPDIVAE KK+EAADLVIFQFPLQWFGVPAILKGWFERV
Sbjct: 61  KDSKNFQYPSESSLAYKEGRLSPDIVAEHKKLEAADLVIFQFPLQWFGVPAILKGWFERV 120

Query: 496 LIGEFAYTYAAMYDKGPFRNKKAVLSITTGGSGSMYSLQGIHGDMNILLWPIQSGTLHFC 675
           L+  FAYTYAAMYD GPF+NKK +LSITTGGSGSMYSLQG+HGDMN++LWPIQSG L FC
Sbjct: 121 LVAGFAYTYAAMYDNGPFQNKKTLLSITTGGSGSMYSLQGVHGDMNVILWPIQSGILRFC 180

Query: 676 GFQVLEPQLTYSIGHTPEDARIQILEEWKKRLENIWDETPLYFAPSSLFDLNFQAGFLMK 855
           GFQVLEPQL YSIGHTP DAR+QILE WKKRLE +W+ETPLYFAPSSLFDLNFQAGFLMK
Sbjct: 181 GFQVLEPQLVYSIGHTPPDARMQILEGWKKRLETVWEETPLYFAPSSLFDLNFQAGFLMK 240

Query: 856 KQVQDEQK 879
           K+VQ+EQK
Sbjct: 241 KEVQEEQK 248



 Score = 55.1 bits (131), Expect(2) = e-135
 Identities = 24/27 (88%), Positives = 25/27 (92%)
 Frame = +3

Query: 876 KSNKFGLSVGHHLGKSIPTDNQVKARK 956
           K NKFGLSVGHHLGKSIP DNQ+KARK
Sbjct: 248 KKNKFGLSVGHHLGKSIPADNQIKARK 274


>ref|NP_001156714.1| ribosyldihydronicotinamide dehydrogenase [quinone] isoform 1 [Mus
           musculus].
          Length = 231

 Score =  239 bits (610), Expect = 3e-63
 Identities = 116/229 (50%), Positives = 152/229 (66%)
 Frame = +1

Query: 136 MAVRKALIILAHSEKTSFNYAMKEAAVEALKRRGWEVAVSDLYAMNFNPVISRKDITGKL 315
           MA +K LI+ AH E  SFN ++K+ AVE L ++G  V VSDLY+MNF P  +R DITG  
Sbjct: 1   MAGKKVLIVYAHQEPKSFNGSLKKVAVEELSKQGCTVTVSDLYSMNFEPRATRNDITGAP 60

Query: 316 KDPGNFQYPAETALAYKEGRLSPDIVAEQKKVEAADLVIFQFPLQWFGVPAILKGWFERV 495
            +P  F Y  ET  AYK+  L+ DI  EQ+KV+ ADLVIFQFPL WF VPAILKGW +RV
Sbjct: 61  SNPDVFSYGIETHEAYKKKALTSDIFEEQRKVQEADLVIFQFPLYWFSVPAILKGWMDRV 120

Query: 496 LIGEFAYTYAAMYDKGPFRNKKAVLSITTGGSGSMYSLQGIHGDMNILLWPIQSGTLHFC 675
           L   FA+     YD G  + K A+LS+TTGG+  MY+  G+ GD    LWP+Q GTLHFC
Sbjct: 121 LCRGFAFDIPGFYDSGFLKGKLALLSLTTGGTAEMYTKDGVSGDFRYFLWPLQHGTLHFC 180

Query: 676 GFQVLEPQLTYSIGHTPEDARIQILEEWKKRLENIWDETPLYFAPSSLF 822
           GF+VL PQ+++ +  + E+ R  +L  W +RL++IW E P++  P   F
Sbjct: 181 GFKVLAPQISFGLDVSSEEERKVMLASWAQRLKSIWKEEPIHCTPPWYF 229


>ref|NP_001156713.1| ribosyldihydronicotinamide dehydrogenase [quinone] isoform 1 [Mus
           musculus].
          Length = 231

 Score =  239 bits (610), Expect = 3e-63
 Identities = 116/229 (50%), Positives = 152/229 (66%)
 Frame = +1

Query: 136 MAVRKALIILAHSEKTSFNYAMKEAAVEALKRRGWEVAVSDLYAMNFNPVISRKDITGKL 315
           MA +K LI+ AH E  SFN ++K+ AVE L ++G  V VSDLY+MNF P  +R DITG  
Sbjct: 1   MAGKKVLIVYAHQEPKSFNGSLKKVAVEELSKQGCTVTVSDLYSMNFEPRATRNDITGAP 60

Query: 316 KDPGNFQYPAETALAYKEGRLSPDIVAEQKKVEAADLVIFQFPLQWFGVPAILKGWFERV 495
            +P  F Y  ET  AYK+  L+ DI  EQ+KV+ ADLVIFQFPL WF VPAILKGW +RV
Sbjct: 61  SNPDVFSYGIETHEAYKKKALTSDIFEEQRKVQEADLVIFQFPLYWFSVPAILKGWMDRV 120

Query: 496 LIGEFAYTYAAMYDKGPFRNKKAVLSITTGGSGSMYSLQGIHGDMNILLWPIQSGTLHFC 675
           L   FA+     YD G  + K A+LS+TTGG+  MY+  G+ GD    LWP+Q GTLHFC
Sbjct: 121 LCRGFAFDIPGFYDSGFLKGKLALLSLTTGGTAEMYTKDGVSGDFRYFLWPLQHGTLHFC 180

Query: 676 GFQVLEPQLTYSIGHTPEDARIQILEEWKKRLENIWDETPLYFAPSSLF 822
           GF+VL PQ+++ +  + E+ R  +L  W +RL++IW E P++  P   F
Sbjct: 181 GFKVLAPQISFGLDVSSEEERKVMLASWAQRLKSIWKEEPIHCTPPWYF 229


>ref|NP_064678.1| ribosyldihydronicotinamide dehydrogenase [quinone] isoform 1 [Mus
           musculus].
          Length = 231

 Score =  239 bits (610), Expect = 3e-63
 Identities = 116/229 (50%), Positives = 152/229 (66%)
 Frame = +1

Query: 136 MAVRKALIILAHSEKTSFNYAMKEAAVEALKRRGWEVAVSDLYAMNFNPVISRKDITGKL 315
           MA +K LI+ AH E  SFN ++K+ AVE L ++G  V VSDLY+MNF P  +R DITG  
Sbjct: 1   MAGKKVLIVYAHQEPKSFNGSLKKVAVEELSKQGCTVTVSDLYSMNFEPRATRNDITGAP 60

Query: 316 KDPGNFQYPAETALAYKEGRLSPDIVAEQKKVEAADLVIFQFPLQWFGVPAILKGWFERV 495
            +P  F Y  ET  AYK+  L+ DI  EQ+KV+ ADLVIFQFPL WF VPAILKGW +RV
Sbjct: 61  SNPDVFSYGIETHEAYKKKALTSDIFEEQRKVQEADLVIFQFPLYWFSVPAILKGWMDRV 120

Query: 496 LIGEFAYTYAAMYDKGPFRNKKAVLSITTGGSGSMYSLQGIHGDMNILLWPIQSGTLHFC 675
           L   FA+     YD G  + K A+LS+TTGG+  MY+  G+ GD    LWP+Q GTLHFC
Sbjct: 121 LCRGFAFDIPGFYDSGFLKGKLALLSLTTGGTAEMYTKDGVSGDFRYFLWPLQHGTLHFC 180

Query: 676 GFQVLEPQLTYSIGHTPEDARIQILEEWKKRLENIWDETPLYFAPSSLF 822
           GF+VL PQ+++ +  + E+ R  +L  W +RL++IW E P++  P   F
Sbjct: 181 GFKVLAPQISFGLDVSSEEERKVMLASWAQRLKSIWKEEPIHCTPPWYF 229


>ref|NP_001156711.1| ribosyldihydronicotinamide dehydrogenase [quinone] isoform 2 [Mus
           musculus].
          Length = 187

 Score =  196 bits (498), Expect = 3e-50
 Identities = 93/185 (50%), Positives = 121/185 (65%)
 Frame = +1

Query: 268 MNFNPVISRKDITGKLKDPGNFQYPAETALAYKEGRLSPDIVAEQKKVEAADLVIFQFPL 447
           MNF P  +R DITG   +P  F Y  ET  AYK+  L+ DI  EQ+KV+ ADLVIFQFPL
Sbjct: 1   MNFEPRATRNDITGAPSNPDVFSYGIETHEAYKKKALTSDIFEEQRKVQEADLVIFQFPL 60

Query: 448 QWFGVPAILKGWFERVLIGEFAYTYAAMYDKGPFRNKKAVLSITTGGSGSMYSLQGIHGD 627
            WF VPAILKGW +RVL   FA+     YD G  + K A+LS+TTGG+  MY+  G+ GD
Sbjct: 61  YWFSVPAILKGWMDRVLCRGFAFDIPGFYDSGFLKGKLALLSLTTGGTAEMYTKDGVSGD 120

Query: 628 MNILLWPIQSGTLHFCGFQVLEPQLTYSIGHTPEDARIQILEEWKKRLENIWDETPLYFA 807
               LWP+Q GTLHFCGF+VL PQ+++ +  + E+ R  +L  W +RL++IW E P++  
Sbjct: 121 FRYFLWPLQHGTLHFCGFKVLAPQISFGLDVSSEEERKVMLASWAQRLKSIWKEEPIHCT 180

Query: 808 PSSLF 822
           P   F
Sbjct: 181 PPWYF 185


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 36,105,549
Number of extensions: 972635
Number of successful extensions: 4594
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 4519
Number of HSP's successfully gapped: 6
Length of query: 352
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 250
Effective length of database: 12,553,887
Effective search space: 3138471750
Effective search space used: 3138471750
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002819
         (1058 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001153085.1| NAD(P)H dehydrogenase [quinone] 1 [Sus scrof...   504   e-154

>ref|NP_001153085.1| NAD(P)H dehydrogenase [quinone] 1 [Sus scrofa].
          Length = 274

 Score =  504 bits (1298), Expect(2) = e-154
 Identities = 248/248 (100%), Positives = 248/248 (100%)
 Frame = +1

Query: 136 MAVRKALIILAHSEKTSFNYAMKEAAVEALKRRGWEVAVSDLYAMNFNPVISRKDITGKL 315
           MAVRKALIILAHSEKTSFNYAMKEAAVEALKRRGWEVAVSDLYAMNFNPVISRKDITGKL
Sbjct: 1   MAVRKALIILAHSEKTSFNYAMKEAAVEALKRRGWEVAVSDLYAMNFNPVISRKDITGKL 60

Query: 316 KDPGNFQYPAETALAYKEGRLSPDIVAEQKKVEAADLVIFQFPLQWFGVPAILKGWFERV 495
           KDPGNFQYPAETALAYKEGRLSPDIVAEQKKVEAADLVIFQFPLQWFGVPAILKGWFERV
Sbjct: 61  KDPGNFQYPAETALAYKEGRLSPDIVAEQKKVEAADLVIFQFPLQWFGVPAILKGWFERV 120

Query: 496 LIGEFAYTYAAMYDKGPFRNKKAVLSITTGGSGSMYSLQGIHGDMNILLWPIQSGTLHFC 675
           LIGEFAYTYAAMYDKGPFRNKKAVLSITTGGSGSMYSLQGIHGDMNILLWPIQSGTLHFC
Sbjct: 121 LIGEFAYTYAAMYDKGPFRNKKAVLSITTGGSGSMYSLQGIHGDMNILLWPIQSGTLHFC 180

Query: 676 GFQVLEPQLTYSIGHTPEDARIQILEEWKKRLENIWDETPLYFAPSSLFDLNFQAGFLMK 855
           GFQVLEPQLTYSIGHTPEDARIQILEEWKKRLENIWDETPLYFAPSSLFDLNFQAGFLMK
Sbjct: 181 GFQVLEPQLTYSIGHTPEDARIQILEEWKKRLENIWDETPLYFAPSSLFDLNFQAGFLMK 240

Query: 856 KQVQDEQK 879
           KQVQDEQK
Sbjct: 241 KQVQDEQK 248



 Score = 58.9 bits (141), Expect(2) = e-154
 Identities = 27/27 (100%), Positives = 27/27 (100%)
 Frame = +3

Query: 876 KSNKFGLSVGHHLGKSIPTDNQVKARK 956
           KSNKFGLSVGHHLGKSIPTDNQVKARK
Sbjct: 248 KSNKFGLSVGHHLGKSIPTDNQVKARK 274


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 26,972,730
Number of extensions: 762559
Number of successful extensions: 3889
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3794
Number of HSP's successfully gapped: 2
Length of query: 352
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 252
Effective length of database: 8,854,232
Effective search space: 2231266464
Effective search space used: 2231266464
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002819
         (1058 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr06                                                         716   0.0  

>Sscrofa_Chr06 
||          Length = 157765593

 Score =  716 bits (361), Expect = 0.0
 Identities = 382/385 (99%), Gaps = 3/385 (0%)
 Strand = Plus / Plus

                                                                            
Query: 652      cagagtggcactttgcatttctgtggcttccaagtcttggaacctcagctgacgtacagc 711
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16247886 cagagtggcactttgcatttctgtggcttccaagtcttggaacctcagctgacgtacagc 16247945

                                                                            
Query: 712      attgggcacactccagaggatgcccgaatccagatcctggaagagtggaagaaacgcctg 771
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16247946 attgggcacactccagaggatgcccgaatccagatcctggaagagtggaagaaacgcctg 16248005

                                                                            
Query: 772      gagaatatttgggatgagacgccactgtactttgcgccaagtagcctctttgacctaaac 831
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16248006 gagaatatttgggatgagacgccactgtactttgcgccaagtagcctctttgacctaaac 16248065

                                                                            
Query: 832      ttccaggcaggattcttaatgaaaaagcaggtgcaggatgagc-aaaaagtaacaaattt 890
                ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 16248066 ttccaggcaggattcttaatgaaaaagcaggtgcaggatgagcaaaaaagtaacaaattt 16248125

                                                                            
Query: 891      ggtctttctgtgggccatcacttgggcaaatccatcccgacggacaaccaggttaaagct 950
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16248126 ggtctttctgtgggccatcacttgggcaaatccatcccgacggacaaccaggttaaagct 16248185

                                                                            
Query: 951      agaaaataagattcacaagacttttatttcc-tctaaaatgtatcgaaatttaggtttct 1009
                ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| 
Sbjct: 16248186 agaaaataagattcacaagacttttatttccttctaaaatgtatcgaaatttaggtttc- 16248244

                                         
Query: 1010     tttttctgccttccttgacttgctt 1034
                |||||||||||||||||||||||||
Sbjct: 16248245 tttttctgccttccttgacttgctt 16248269



 Score =  333 bits (168), Expect = 1e-88
 Identities = 168/168 (100%)
 Strand = Plus / Plus

                                                                            
Query: 142      gtcagaaaagcactgatcatactggcccactccgagaagacgtccttcaattatgccatg 201
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16241854 gtcagaaaagcactgatcatactggcccactccgagaagacgtccttcaattatgccatg 16241913

                                                                            
Query: 202      aaggaggccgccgtggaggctttgaagaggagaggatgggaggtcgccgtgtcggacctg 261
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16241914 aaggaggccgccgtggaggctttgaagaggagaggatgggaggtcgccgtgtcggacctg 16241973

                                                                
Query: 262      tatgccatgaacttcaatcccgtcatctccagaaaggacatcacaggt 309
                ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16241974 tatgccatgaacttcaatcccgtcatctccagaaaggacatcacaggt 16242021



 Score =  281 bits (142), Expect = 4e-73
 Identities = 142/142 (100%)
 Strand = Plus / Plus

                                                                            
Query: 1        gtagccgggcgctccgcgggcagcacgagtgacacctcccaggtcgcagccagaggacct 60
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16238970 gtagccgggcgctccgcgggcagcacgagtgacacctcccaggtcgcagccagaggacct 16239029

                                                                            
Query: 61       acagccccccgcgccttcccagcttgagtcggcccggcaaccagcagcccggccaatctg 120
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16239030 acagccccccgcgccttcccagcttgagtcggcccggcaaccagcagcccggccaatctg 16239089

                                      
Query: 121      cgcgccgccggagccatggcgg 142
                ||||||||||||||||||||||
Sbjct: 16239090 cgcgccgccggagccatggcgg 16239111



 Score =  258 bits (130), Expect = 5e-66
 Identities = 133/134 (99%)
 Strand = Plus / Plus

                                                                            
Query: 305      caggtaaactgaaggaccccgggaactttcagtatcctgccgagactgctctggcttata 364
                |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16242107 caggtaaactgaaggatcccgggaactttcagtatcctgccgagactgctctggcttata 16242166

                                                                            
Query: 365      aagaaggccgtctgagcccagatattgtggccgaacaaaagaaggtggaagccgcagacc 424
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16242167 aagaaggccgtctgagcccagatattgtggccgaacaaaagaaggtggaagccgcagacc 16242226

                              
Query: 425      ttgtgatttttcag 438
                ||||||||||||||
Sbjct: 16242227 ttgtgatttttcag 16242240



 Score =  232 bits (117), Expect = 3e-58
 Identities = 117/117 (100%)
 Strand = Plus / Plus

                                                                            
Query: 436      cagttcccactgcagtggtttggagtccctgctattctgaaaggctggtttgaacgagtg 495
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16245236 cagttcccactgcagtggtttggagtccctgctattctgaaaggctggtttgaacgagtg 16245295

                                                                         
Query: 496      ctcataggggagtttgcttacacatacgctgccatgtatgacaagggacctttccgg 552
                |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16245296 ctcataggggagtttgcttacacatacgctgccatgtatgacaagggacctttccgg 16245352



 Score =  204 bits (103), Expect = 7e-50
 Identities = 103/103 (100%)
 Strand = Plus / Plus

                                                                            
Query: 552      gaataagaaagcagtgctttccatcaccactggcggcagtggctccatgtactctctgca 611
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16246421 gaataagaaagcagtgctttccatcaccactggcggcagtggctccatgtactctctgca 16246480

                                                           
Query: 612      gggtatccacggggacatgaatatcctcctctggccaattcag 654
                |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16246481 gggtatccacggggacatgaatatcctcctctggccaattcag 16246523


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 32,170,242
Number of extensions: 234
Number of successful extensions: 234
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 231
Number of HSP's successfully gapped: 6
Length of query: 1058
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1037
Effective length of database: 2,808,413,156
Effective search space: 2912324442772
Effective search space used: 2912324442772
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)