Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002819
(1058 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029707.1| NAD(P)H dehydrogenase [quinone] 1 [Bos tauru... 485 e-145
Alignment gi|NP_001029495.1| ribosyldihydronicotinamide dehydrogenase [Bo... 239 2e-63
>ref|NP_001029707.1| NAD(P)H dehydrogenase [quinone] 1 [Bos taurus].
Length = 274
Score = 485 bits (1249), Expect(2) = e-145
Identities = 234/248 (94%), Positives = 242/248 (97%)
Frame = +1
Query: 136 MAVRKALIILAHSEKTSFNYAMKEAAVEALKRRGWEVAVSDLYAMNFNPVISRKDITGKL 315
MAVRKALI+LAHSE+TSFNYAMKEAA+EALKR+GWEV VSDLYAMNFNPVISRKDITGKL
Sbjct: 1 MAVRKALIVLAHSERTSFNYAMKEAAIEALKRKGWEVTVSDLYAMNFNPVISRKDITGKL 60
Query: 316 KDPGNFQYPAETALAYKEGRLSPDIVAEQKKVEAADLVIFQFPLQWFGVPAILKGWFERV 495
KDPGNFQYPAET LAYKEGRLSPDIVAEQKK+EAADLVIFQFPLQWFGVPAILKGWFERV
Sbjct: 61 KDPGNFQYPAETVLAYKEGRLSPDIVAEQKKLEAADLVIFQFPLQWFGVPAILKGWFERV 120
Query: 496 LIGEFAYTYAAMYDKGPFRNKKAVLSITTGGSGSMYSLQGIHGDMNILLWPIQSGTLHFC 675
LIGEFAY YAAMYDKGPFRNKKAVLSITTGGSGSMYSL GIHGDMNI+LWPIQSGTLHFC
Sbjct: 121 LIGEFAYKYAAMYDKGPFRNKKAVLSITTGGSGSMYSLHGIHGDMNIILWPIQSGTLHFC 180
Query: 676 GFQVLEPQLTYSIGHTPEDARIQILEEWKKRLENIWDETPLYFAPSSLFDLNFQAGFLMK 855
GFQVLEPQLTYSIGHTPEDAR+QILE WKKRLENIWDE PLYFAPSSLFDLNFQAGFLMK
Sbjct: 181 GFQVLEPQLTYSIGHTPEDARVQILEGWKKRLENIWDEMPLYFAPSSLFDLNFQAGFLMK 240
Query: 856 KQVQDEQK 879
K+VQDEQK
Sbjct: 241 KEVQDEQK 248
Score = 50.8 bits (120), Expect(2) = e-145
Identities = 23/27 (85%), Positives = 24/27 (88%)
Frame = +3
Query: 876 KSNKFGLSVGHHLGKSIPTDNQVKARK 956
KS KFGLSVGHHLGKSIP DNQ+KA K
Sbjct: 248 KSKKFGLSVGHHLGKSIPMDNQIKAIK 274
>ref|NP_001029495.1| ribosyldihydronicotinamide dehydrogenase [Bos taurus].
Length = 231
Score = 239 bits (611), Expect = 2e-63
Identities = 114/229 (49%), Positives = 154/229 (67%)
Frame = +1
Query: 136 MAVRKALIILAHSEKTSFNYAMKEAAVEALKRRGWEVAVSDLYAMNFNPVISRKDITGKL 315
MA +K LI+ AH E S N ++K+ AV L ++G V VSDLYAMNF P + KDITG L
Sbjct: 1 MAGKKVLIVYAHQEPRSLNGSLKDVAVAELSQQGCSVIVSDLYAMNFEPRATGKDITGTL 60
Query: 316 KDPGNFQYPAETALAYKEGRLSPDIVAEQKKVEAADLVIFQFPLQWFGVPAILKGWFERV 495
+PG F Y E AYK+ LS DI+ EQKK++ A+LVIFQFPL WF VPA+LKGW +RV
Sbjct: 61 SNPGFFNYGVEAHKAYKKQSLSSDIIEEQKKLQEANLVIFQFPLYWFSVPAVLKGWMDRV 120
Query: 496 LIGEFAYTYAAMYDKGPFRNKKAVLSITTGGSGSMYSLQGIHGDMNILLWPIQSGTLHFC 675
L FA+ + YD G + K A+LS+TTGG+ SM+S G++GD LWP+Q GTLHFC
Sbjct: 121 LCQGFAFDFPGSYDDGFLKGKLAILSLTTGGTASMFSKTGVNGDFRYFLWPLQHGTLHFC 180
Query: 676 GFQVLEPQLTYSIGHTPEDARIQILEEWKKRLENIWDETPLYFAPSSLF 822
GF+VL PQ+++ E+ R +++ W +RL+ +W+E P+ +P F
Sbjct: 181 GFKVLAPQISFGPEMASEEERKRMVASWAQRLKTLWEEEPIQCSPPWYF 229
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 41,621,999
Number of extensions: 1159155
Number of successful extensions: 5825
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5703
Number of HSP's successfully gapped: 3
Length of query: 352
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 249
Effective length of database: 14,273,310
Effective search space: 3554054190
Effective search space used: 3554054190
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002819
(1058 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_853617.1| PREDICTED: similar to NAD(P)H dehydrogenase [qu... 464 e-141
Alignment gi|XP_848388.1| PREDICTED: similar to NAD(P)H dehydrogenase, qu... 227 2e-59
Alignment gi|XP_856036.1| PREDICTED: similar to NAD(P)H dehydrogenase, qu... 165 8e-41
Alignment gi|XP_856074.1| PREDICTED: similar to NAD(P)H dehydrogenase, qu... 144 1e-34
>ref|XP_853617.1| PREDICTED: similar to NAD(P)H dehydrogenase [quinone] 1 (Quinone
reductase 1) (QR1) (DT-diaphorase) (DTD) (Azoreductase)
(Phylloquinone reductase) (Menadione reductase) [Canis
familiaris].
Length = 433
Score = 464 bits (1194), Expect(3) = e-141
Identities = 224/247 (90%), Positives = 235/247 (95%)
Frame = +1
Query: 139 AVRKALIILAHSEKTSFNYAMKEAAVEALKRRGWEVAVSDLYAMNFNPVISRKDITGKLK 318
A RKALI+LAH+EK SFN+AMKEAAVEAL+ GWEV VSDLYAMNFNPVISR+D+TG K
Sbjct: 161 AARKALIVLAHAEKASFNHAMKEAAVEALEATGWEVTVSDLYAMNFNPVISRRDVTGTPK 220
Query: 319 DPGNFQYPAETALAYKEGRLSPDIVAEQKKVEAADLVIFQFPLQWFGVPAILKGWFERVL 498
DPGNFQYPAE ALAYKEGRLSPDIVAEQKK+EAADLVIFQFPLQWFGVPAILKGWFERVL
Sbjct: 221 DPGNFQYPAEAALAYKEGRLSPDIVAEQKKLEAADLVIFQFPLQWFGVPAILKGWFERVL 280
Query: 499 IGEFAYTYAAMYDKGPFRNKKAVLSITTGGSGSMYSLQGIHGDMNILLWPIQSGTLHFCG 678
IGEFAYTYAAMYDKGPFRNKK VLSITTGGSGSMYSLQGIHGDMNI+LWPIQSGTLHFCG
Sbjct: 281 IGEFAYTYAAMYDKGPFRNKKTVLSITTGGSGSMYSLQGIHGDMNIILWPIQSGTLHFCG 340
Query: 679 FQVLEPQLTYSIGHTPEDARIQILEEWKKRLENIWDETPLYFAPSSLFDLNFQAGFLMKK 858
FQVLEPQLTYSIGHTP D RIQILE WKKRLENIW+ETPLYFAPSSLFDLNFQAGFLMKK
Sbjct: 341 FQVLEPQLTYSIGHTPMDVRIQILEGWKKRLENIWNETPLYFAPSSLFDLNFQAGFLMKK 400
Query: 859 QVQDEQK 879
+VQD+QK
Sbjct: 401 EVQDKQK 407
Score = 55.1 bits (131), Expect(3) = e-141
Identities = 24/27 (88%), Positives = 26/27 (96%)
Frame = +3
Query: 876 KSNKFGLSVGHHLGKSIPTDNQVKARK 956
K+ KFGLSVGHHLGKSIPTDNQ+KARK
Sbjct: 407 KNEKFGLSVGHHLGKSIPTDNQIKARK 433
Score = 23.1 bits (48), Expect(3) = e-141
Identities = 12/32 (37%), Positives = 14/32 (43%)
Frame = +2
Query: 17 RAARVTPPRSQPEDLQPPAPSQLESARQPAAR 112
RA R PP+ Q P + R PAAR
Sbjct: 132 RAFRAEPPKPQTRSAHPEVGAASLLPRVPAAR 163
>ref|XP_848388.1| PREDICTED: similar to NAD(P)H dehydrogenase, quinone 2 isoform 2
[Canis familiaris].
Length = 231
Score = 227 bits (578), Expect = 2e-59
Identities = 110/229 (48%), Positives = 148/229 (64%)
Frame = +1
Query: 136 MAVRKALIILAHSEKTSFNYAMKEAAVEALKRRGWEVAVSDLYAMNFNPVISRKDITGKL 315
MA +K LI+ AH E SFN ++K+ AV+ L R+G + VSDLYAM+F P +RKD+ G L
Sbjct: 1 MAGKKVLIVYAHQEPKSFNGSLKKVAVDELSRQGCAITVSDLYAMDFEPRATRKDVIGAL 60
Query: 316 KDPGNFQYPAETALAYKEGRLSPDIVAEQKKVEAADLVIFQFPLQWFGVPAILKGWFERV 495
+P F Y E A+K+ L+ DI EQKKV+ ADLVIFQFPL WF +PAILKGW +RV
Sbjct: 61 SNPELFNYGMEAYEAFKKRSLASDITDEQKKVQEADLVIFQFPLYWFSMPAILKGWMDRV 120
Query: 496 LIGEFAYTYAAMYDKGPFRNKKAVLSITTGGSGSMYSLQGIHGDMNILLWPIQSGTLHFC 675
L FA+ YD G + K A++S+TTGG+ MYS G+ GD LW +Q G LHFC
Sbjct: 121 LCQGFAFDIPGFYDSGFLKGKLALVSLTTGGTAEMYSRSGVSGDFRYFLWALQHGALHFC 180
Query: 676 GFQVLEPQLTYSIGHTPEDARIQILEEWKKRLENIWDETPLYFAPSSLF 822
GF+VL PQ++++ E+ R ++ W +RL IW+E P+ +P F
Sbjct: 181 GFKVLAPQISFAPEIASEEERKAMVTSWAQRLRTIWEEEPIDCSPPWYF 229
>ref|XP_856036.1| PREDICTED: similar to NAD(P)H dehydrogenase, quinone 2 isoform 3
[Canis familiaris].
Length = 193
Score = 165 bits (417), Expect = 8e-41
Identities = 90/229 (39%), Positives = 124/229 (54%)
Frame = +1
Query: 136 MAVRKALIILAHSEKTSFNYAMKEAAVEALKRRGWEVAVSDLYAMNFNPVISRKDITGKL 315
MA +K LI+ AH E SFN ++K+ AV+ L R+G + VSDLYAM+F P +RKD+ G L
Sbjct: 1 MAGKKVLIVYAHQEPKSFNGSLKKVAVDELSRQGCAITVSDLYAMDFEPRATRKDVIGAL 60
Query: 316 KDPGNFQYPAETALAYKEGRLSPDIVAEQKKVEAADLVIFQFPLQWFGVPAILKGWFERV 495
+P F Y E A+K+ L+ DI EQKKV+ ADLVIFQ
Sbjct: 61 SNPELFNYGMEAYEAFKKRSLASDITDEQKKVQEADLVIFQ------------------- 101
Query: 496 LIGEFAYTYAAMYDKGPFRNKKAVLSITTGGSGSMYSLQGIHGDMNILLWPIQSGTLHFC 675
K A++S+TTGG+ MYS G+ GD LW +Q G LHFC
Sbjct: 102 -------------------GKLALVSLTTGGTAEMYSRSGVSGDFRYFLWALQHGALHFC 142
Query: 676 GFQVLEPQLTYSIGHTPEDARIQILEEWKKRLENIWDETPLYFAPSSLF 822
GF+VL PQ++++ E+ R ++ W +RL IW+E P+ +P F
Sbjct: 143 GFKVLAPQISFAPEIASEEERKAMVTSWAQRLRTIWEEEPIDCSPPWYF 191
>ref|XP_856074.1| PREDICTED: similar to NAD(P)H dehydrogenase, quinone 2 isoform 4
[Canis familiaris].
Length = 146
Score = 144 bits (364), Expect = 1e-34
Identities = 72/136 (52%), Positives = 91/136 (66%)
Frame = +1
Query: 136 MAVRKALIILAHSEKTSFNYAMKEAAVEALKRRGWEVAVSDLYAMNFNPVISRKDITGKL 315
MA +K LI+ AH E SFN ++K+ AV+ L R+G + VSDLYAM+F P +RKD+ G L
Sbjct: 1 MAGKKVLIVYAHQEPKSFNGSLKKVAVDELSRQGCAITVSDLYAMDFEPRATRKDVIGAL 60
Query: 316 KDPGNFQYPAETALAYKEGRLSPDIVAEQKKVEAADLVIFQFPLQWFGVPAILKGWFERV 495
+P F Y E A+K+ L+ DI EQKKV+ ADLVIFQFPL WF +PAILKGW +RV
Sbjct: 61 SNPELFNYGMEAYEAFKKRSLASDITDEQKKVQEADLVIFQFPLYWFSMPAILKGWMDRV 120
Query: 496 LIGEFAYTYAAMYDKG 543
L FA+ YD G
Sbjct: 121 LCQGFAFDIPGFYDSG 136
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 43,384,117
Number of extensions: 1181462
Number of successful extensions: 5903
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 5849
Number of HSP's successfully gapped: 7
Length of query: 352
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 248
Effective length of database: 15,407,560
Effective search space: 3821074880
Effective search space used: 3821074880
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002819
(1058 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_000894.1| NAD(P)H dehydrogenase [quinone] 1 isoform a [Ho... 464 e-140
Alignment gi|NP_001020604.1| NAD(P)H dehydrogenase [quinone] 1 isoform b ... 382 e-116
Alignment gi|NP_001020605.1| NAD(P)H dehydrogenase [quinone] 1 isoform c ... 365 e-111
Alignment gi|NP_000895.2| ribosyldihydronicotinamide dehydrogenase [quino... 234 1e-61
>ref|NP_000894.1| NAD(P)H dehydrogenase [quinone] 1 isoform a [Homo sapiens].
Length = 274
Score = 464 bits (1194), Expect(2) = e-140
Identities = 222/248 (89%), Positives = 235/248 (94%)
Frame = +1
Query: 136 MAVRKALIILAHSEKTSFNYAMKEAAVEALKRRGWEVAVSDLYAMNFNPVISRKDITGKL 315
M R+ALI+LAHSE+TSFNYAMKEAA ALK++GWEV SDLYAMNFNP+ISRKDITGKL
Sbjct: 1 MVGRRALIVLAHSERTSFNYAMKEAAAAALKKKGWEVVESDLYAMNFNPIISRKDITGKL 60
Query: 316 KDPGNFQYPAETALAYKEGRLSPDIVAEQKKVEAADLVIFQFPLQWFGVPAILKGWFERV 495
KDP NFQYPAE+ LAYKEG LSPDIVAEQKK+EAADLVIFQFPLQWFGVPAILKGWFERV
Sbjct: 61 KDPANFQYPAESVLAYKEGHLSPDIVAEQKKLEAADLVIFQFPLQWFGVPAILKGWFERV 120
Query: 496 LIGEFAYTYAAMYDKGPFRNKKAVLSITTGGSGSMYSLQGIHGDMNILLWPIQSGTLHFC 675
IGEFAYTYAAMYDKGPFR+KKAVLSITTGGSGSMYSLQGIHGDMN++LWPIQSG LHFC
Sbjct: 121 FIGEFAYTYAAMYDKGPFRSKKAVLSITTGGSGSMYSLQGIHGDMNVILWPIQSGILHFC 180
Query: 676 GFQVLEPQLTYSIGHTPEDARIQILEEWKKRLENIWDETPLYFAPSSLFDLNFQAGFLMK 855
GFQVLEPQLTYSIGHTP DARIQILE WKKRLENIWDETPLYFAPSSLFDLNFQAGFLMK
Sbjct: 181 GFQVLEPQLTYSIGHTPADARIQILEGWKKRLENIWDETPLYFAPSSLFDLNFQAGFLMK 240
Query: 856 KQVQDEQK 879
K+VQDE+K
Sbjct: 241 KEVQDEEK 248
Score = 55.1 bits (131), Expect(2) = e-140
Identities = 24/27 (88%), Positives = 26/27 (96%)
Frame = +3
Query: 876 KSNKFGLSVGHHLGKSIPTDNQVKARK 956
K+ KFGLSVGHHLGKSIPTDNQ+KARK
Sbjct: 248 KNKKFGLSVGHHLGKSIPTDNQIKARK 274
>ref|NP_001020604.1| NAD(P)H dehydrogenase [quinone] 1 isoform b [Homo sapiens].
Length = 240
Score = 382 bits (980), Expect(2) = e-116
Identities = 191/248 (77%), Positives = 201/248 (81%)
Frame = +1
Query: 136 MAVRKALIILAHSEKTSFNYAMKEAAVEALKRRGWEVAVSDLYAMNFNPVISRKDITGKL 315
M R+ALI+LAHSE+TSFNYAMKEAA ALK++GWEV SDLYAMNFNP+ISRKDITGKL
Sbjct: 1 MVGRRALIVLAHSERTSFNYAMKEAAAAALKKKGWEVVESDLYAMNFNPIISRKDITGKL 60
Query: 316 KDPGNFQYPAETALAYKEGRLSPDIVAEQKKVEAADLVIFQFPLQWFGVPAILKGWFERV 495
KDP NFQYPAE+ LAYKEG LSPDIVAEQKK+EAADLVIFQFPLQWFGVPAILKGWFERV
Sbjct: 61 KDPANFQYPAESVLAYKEGHLSPDIVAEQKKLEAADLVIFQFPLQWFGVPAILKGWFERV 120
Query: 496 LIGEFAYTYAAMYDKGPFRNKKAVLSITTGGSGSMYSLQGIHGDMNILLWPIQSGTLHFC 675
IGEFAYTYAAMYDKGPFR SG LHFC
Sbjct: 121 FIGEFAYTYAAMYDKGPFR----------------------------------SGILHFC 146
Query: 676 GFQVLEPQLTYSIGHTPEDARIQILEEWKKRLENIWDETPLYFAPSSLFDLNFQAGFLMK 855
GFQVLEPQLTYSIGHTP DARIQILE WKKRLENIWDETPLYFAPSSLFDLNFQAGFLMK
Sbjct: 147 GFQVLEPQLTYSIGHTPADARIQILEGWKKRLENIWDETPLYFAPSSLFDLNFQAGFLMK 206
Query: 856 KQVQDEQK 879
K+VQDE+K
Sbjct: 207 KEVQDEEK 214
Score = 55.1 bits (131), Expect(2) = e-116
Identities = 24/27 (88%), Positives = 26/27 (96%)
Frame = +3
Query: 876 KSNKFGLSVGHHLGKSIPTDNQVKARK 956
K+ KFGLSVGHHLGKSIPTDNQ+KARK
Sbjct: 214 KNKKFGLSVGHHLGKSIPTDNQIKARK 240
>ref|NP_001020605.1| NAD(P)H dehydrogenase [quinone] 1 isoform c [Homo sapiens].
Length = 236
Score = 365 bits (936), Expect(2) = e-111
Identities = 185/248 (74%), Positives = 198/248 (79%)
Frame = +1
Query: 136 MAVRKALIILAHSEKTSFNYAMKEAAVEALKRRGWEVAVSDLYAMNFNPVISRKDITGKL 315
M R+ALI+LAHSE+TSFNYAMKEAA ALK++GWEV SDLYAMNFNP+ISRKDITGKL
Sbjct: 1 MVGRRALIVLAHSERTSFNYAMKEAAAAALKKKGWEVVESDLYAMNFNPIISRKDITGKL 60
Query: 316 KDPGNFQYPAETALAYKEGRLSPDIVAEQKKVEAADLVIFQFPLQWFGVPAILKGWFERV 495
KDP NFQYPAE+ LAYKEG LSPDIVAEQKK+EAADLVIFQ
Sbjct: 61 KDPANFQYPAESVLAYKEGHLSPDIVAEQKKLEAADLVIFQ------------------- 101
Query: 496 LIGEFAYTYAAMYDKGPFRNKKAVLSITTGGSGSMYSLQGIHGDMNILLWPIQSGTLHFC 675
+KKAVLSITTGGSGSMYSLQGIHGDMN++LWPIQSG LHFC
Sbjct: 102 -------------------SKKAVLSITTGGSGSMYSLQGIHGDMNVILWPIQSGILHFC 142
Query: 676 GFQVLEPQLTYSIGHTPEDARIQILEEWKKRLENIWDETPLYFAPSSLFDLNFQAGFLMK 855
GFQVLEPQLTYSIGHTP DARIQILE WKKRLENIWDETPLYFAPSSLFDLNFQAGFLMK
Sbjct: 143 GFQVLEPQLTYSIGHTPADARIQILEGWKKRLENIWDETPLYFAPSSLFDLNFQAGFLMK 202
Query: 856 KQVQDEQK 879
K+VQDE+K
Sbjct: 203 KEVQDEEK 210
Score = 55.1 bits (131), Expect(2) = e-111
Identities = 24/27 (88%), Positives = 26/27 (96%)
Frame = +3
Query: 876 KSNKFGLSVGHHLGKSIPTDNQVKARK 956
K+ KFGLSVGHHLGKSIPTDNQ+KARK
Sbjct: 210 KNKKFGLSVGHHLGKSIPTDNQIKARK 236
>ref|NP_000895.2| ribosyldihydronicotinamide dehydrogenase [quinone] [Homo sapiens].
Length = 231
Score = 234 bits (597), Expect = 1e-61
Identities = 115/221 (52%), Positives = 146/221 (66%)
Frame = +1
Query: 136 MAVRKALIILAHSEKTSFNYAMKEAAVEALKRRGWEVAVSDLYAMNFNPVISRKDITGKL 315
MA +K LI+ AH E SFN ++K AV+ L R+G V VSDLYAMN P + KDITG L
Sbjct: 1 MAGKKVLIVYAHQEPKSFNGSLKNVAVDELSRQGCTVTVSDLYAMNLEPRATDKDITGTL 60
Query: 316 KDPGNFQYPAETALAYKEGRLSPDIVAEQKKVEAADLVIFQFPLQWFGVPAILKGWFERV 495
+P F Y ET AYK+ L+ DI EQKKV ADLVIFQFPL WF VPAILKGW +RV
Sbjct: 61 SNPEVFNYGVETHEAYKQRSLASDITDEQKKVREADLVIFQFPLYWFSVPAILKGWMDRV 120
Query: 496 LIGEFAYTYAAMYDKGPFRNKKAVLSITTGGSGSMYSLQGIHGDMNILLWPIQSGTLHFC 675
L FA+ YD G + K A+LS+TTGG+ MY+ G++GD LWP+Q GTLHFC
Sbjct: 121 LCQGFAFDIPGFYDSGLLQGKLALLSVTTGGTAEMYTKTGVNGDSRYFLWPLQHGTLHFC 180
Query: 676 GFQVLEPQLTYSIGHTPEDARIQILEEWKKRLENIWDETPL 798
GF+VL PQ++++ E+ R ++ W +RL+ IW E P+
Sbjct: 181 GFKVLAPQISFAPEIASEEERKGMVAAWSQRLQTIWKEEPI 221
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 42,571,238
Number of extensions: 1157326
Number of successful extensions: 5538
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 5452
Number of HSP's successfully gapped: 9
Length of query: 352
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 248
Effective length of database: 14,868,908
Effective search space: 3687489184
Effective search space used: 3687489184
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002819
(1058 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_032732.3| NAD(P)H dehydrogenase [quinone] 1 [Mus musculus]. 445 e-135
Alignment gi|NP_001156714.1| ribosyldihydronicotinamide dehydrogenase [qu... 239 3e-63
Alignment gi|NP_001156713.1| ribosyldihydronicotinamide dehydrogenase [qu... 239 3e-63
Alignment gi|NP_064678.1| ribosyldihydronicotinamide dehydrogenase [quino... 239 3e-63
Alignment gi|NP_001156711.1| ribosyldihydronicotinamide dehydrogenase [qu... 196 3e-50
>ref|NP_032732.3| NAD(P)H dehydrogenase [quinone] 1 [Mus musculus].
Length = 274
Score = 445 bits (1145), Expect(2) = e-135
Identities = 211/248 (85%), Positives = 231/248 (93%)
Frame = +1
Query: 136 MAVRKALIILAHSEKTSFNYAMKEAAVEALKRRGWEVAVSDLYAMNFNPVISRKDITGKL 315
MA R+ALI+LAHSEKTSFNYAMKEAAVEALK+RGWEV SDLYAMNFNP+ISR DITG+L
Sbjct: 1 MAARRALIVLAHSEKTSFNYAMKEAAVEALKKRGWEVLESDLYAMNFNPIISRNDITGEL 60
Query: 316 KDPGNFQYPAETALAYKEGRLSPDIVAEQKKVEAADLVIFQFPLQWFGVPAILKGWFERV 495
KD NFQYP+E++LAYKEGRLSPDIVAE KK+EAADLVIFQFPLQWFGVPAILKGWFERV
Sbjct: 61 KDSKNFQYPSESSLAYKEGRLSPDIVAEHKKLEAADLVIFQFPLQWFGVPAILKGWFERV 120
Query: 496 LIGEFAYTYAAMYDKGPFRNKKAVLSITTGGSGSMYSLQGIHGDMNILLWPIQSGTLHFC 675
L+ FAYTYAAMYD GPF+NKK +LSITTGGSGSMYSLQG+HGDMN++LWPIQSG L FC
Sbjct: 121 LVAGFAYTYAAMYDNGPFQNKKTLLSITTGGSGSMYSLQGVHGDMNVILWPIQSGILRFC 180
Query: 676 GFQVLEPQLTYSIGHTPEDARIQILEEWKKRLENIWDETPLYFAPSSLFDLNFQAGFLMK 855
GFQVLEPQL YSIGHTP DAR+QILE WKKRLE +W+ETPLYFAPSSLFDLNFQAGFLMK
Sbjct: 181 GFQVLEPQLVYSIGHTPPDARMQILEGWKKRLETVWEETPLYFAPSSLFDLNFQAGFLMK 240
Query: 856 KQVQDEQK 879
K+VQ+EQK
Sbjct: 241 KEVQEEQK 248
Score = 55.1 bits (131), Expect(2) = e-135
Identities = 24/27 (88%), Positives = 25/27 (92%)
Frame = +3
Query: 876 KSNKFGLSVGHHLGKSIPTDNQVKARK 956
K NKFGLSVGHHLGKSIP DNQ+KARK
Sbjct: 248 KKNKFGLSVGHHLGKSIPADNQIKARK 274
>ref|NP_001156714.1| ribosyldihydronicotinamide dehydrogenase [quinone] isoform 1 [Mus
musculus].
Length = 231
Score = 239 bits (610), Expect = 3e-63
Identities = 116/229 (50%), Positives = 152/229 (66%)
Frame = +1
Query: 136 MAVRKALIILAHSEKTSFNYAMKEAAVEALKRRGWEVAVSDLYAMNFNPVISRKDITGKL 315
MA +K LI+ AH E SFN ++K+ AVE L ++G V VSDLY+MNF P +R DITG
Sbjct: 1 MAGKKVLIVYAHQEPKSFNGSLKKVAVEELSKQGCTVTVSDLYSMNFEPRATRNDITGAP 60
Query: 316 KDPGNFQYPAETALAYKEGRLSPDIVAEQKKVEAADLVIFQFPLQWFGVPAILKGWFERV 495
+P F Y ET AYK+ L+ DI EQ+KV+ ADLVIFQFPL WF VPAILKGW +RV
Sbjct: 61 SNPDVFSYGIETHEAYKKKALTSDIFEEQRKVQEADLVIFQFPLYWFSVPAILKGWMDRV 120
Query: 496 LIGEFAYTYAAMYDKGPFRNKKAVLSITTGGSGSMYSLQGIHGDMNILLWPIQSGTLHFC 675
L FA+ YD G + K A+LS+TTGG+ MY+ G+ GD LWP+Q GTLHFC
Sbjct: 121 LCRGFAFDIPGFYDSGFLKGKLALLSLTTGGTAEMYTKDGVSGDFRYFLWPLQHGTLHFC 180
Query: 676 GFQVLEPQLTYSIGHTPEDARIQILEEWKKRLENIWDETPLYFAPSSLF 822
GF+VL PQ+++ + + E+ R +L W +RL++IW E P++ P F
Sbjct: 181 GFKVLAPQISFGLDVSSEEERKVMLASWAQRLKSIWKEEPIHCTPPWYF 229
>ref|NP_001156713.1| ribosyldihydronicotinamide dehydrogenase [quinone] isoform 1 [Mus
musculus].
Length = 231
Score = 239 bits (610), Expect = 3e-63
Identities = 116/229 (50%), Positives = 152/229 (66%)
Frame = +1
Query: 136 MAVRKALIILAHSEKTSFNYAMKEAAVEALKRRGWEVAVSDLYAMNFNPVISRKDITGKL 315
MA +K LI+ AH E SFN ++K+ AVE L ++G V VSDLY+MNF P +R DITG
Sbjct: 1 MAGKKVLIVYAHQEPKSFNGSLKKVAVEELSKQGCTVTVSDLYSMNFEPRATRNDITGAP 60
Query: 316 KDPGNFQYPAETALAYKEGRLSPDIVAEQKKVEAADLVIFQFPLQWFGVPAILKGWFERV 495
+P F Y ET AYK+ L+ DI EQ+KV+ ADLVIFQFPL WF VPAILKGW +RV
Sbjct: 61 SNPDVFSYGIETHEAYKKKALTSDIFEEQRKVQEADLVIFQFPLYWFSVPAILKGWMDRV 120
Query: 496 LIGEFAYTYAAMYDKGPFRNKKAVLSITTGGSGSMYSLQGIHGDMNILLWPIQSGTLHFC 675
L FA+ YD G + K A+LS+TTGG+ MY+ G+ GD LWP+Q GTLHFC
Sbjct: 121 LCRGFAFDIPGFYDSGFLKGKLALLSLTTGGTAEMYTKDGVSGDFRYFLWPLQHGTLHFC 180
Query: 676 GFQVLEPQLTYSIGHTPEDARIQILEEWKKRLENIWDETPLYFAPSSLF 822
GF+VL PQ+++ + + E+ R +L W +RL++IW E P++ P F
Sbjct: 181 GFKVLAPQISFGLDVSSEEERKVMLASWAQRLKSIWKEEPIHCTPPWYF 229
>ref|NP_064678.1| ribosyldihydronicotinamide dehydrogenase [quinone] isoform 1 [Mus
musculus].
Length = 231
Score = 239 bits (610), Expect = 3e-63
Identities = 116/229 (50%), Positives = 152/229 (66%)
Frame = +1
Query: 136 MAVRKALIILAHSEKTSFNYAMKEAAVEALKRRGWEVAVSDLYAMNFNPVISRKDITGKL 315
MA +K LI+ AH E SFN ++K+ AVE L ++G V VSDLY+MNF P +R DITG
Sbjct: 1 MAGKKVLIVYAHQEPKSFNGSLKKVAVEELSKQGCTVTVSDLYSMNFEPRATRNDITGAP 60
Query: 316 KDPGNFQYPAETALAYKEGRLSPDIVAEQKKVEAADLVIFQFPLQWFGVPAILKGWFERV 495
+P F Y ET AYK+ L+ DI EQ+KV+ ADLVIFQFPL WF VPAILKGW +RV
Sbjct: 61 SNPDVFSYGIETHEAYKKKALTSDIFEEQRKVQEADLVIFQFPLYWFSVPAILKGWMDRV 120
Query: 496 LIGEFAYTYAAMYDKGPFRNKKAVLSITTGGSGSMYSLQGIHGDMNILLWPIQSGTLHFC 675
L FA+ YD G + K A+LS+TTGG+ MY+ G+ GD LWP+Q GTLHFC
Sbjct: 121 LCRGFAFDIPGFYDSGFLKGKLALLSLTTGGTAEMYTKDGVSGDFRYFLWPLQHGTLHFC 180
Query: 676 GFQVLEPQLTYSIGHTPEDARIQILEEWKKRLENIWDETPLYFAPSSLF 822
GF+VL PQ+++ + + E+ R +L W +RL++IW E P++ P F
Sbjct: 181 GFKVLAPQISFGLDVSSEEERKVMLASWAQRLKSIWKEEPIHCTPPWYF 229
>ref|NP_001156711.1| ribosyldihydronicotinamide dehydrogenase [quinone] isoform 2 [Mus
musculus].
Length = 187
Score = 196 bits (498), Expect = 3e-50
Identities = 93/185 (50%), Positives = 121/185 (65%)
Frame = +1
Query: 268 MNFNPVISRKDITGKLKDPGNFQYPAETALAYKEGRLSPDIVAEQKKVEAADLVIFQFPL 447
MNF P +R DITG +P F Y ET AYK+ L+ DI EQ+KV+ ADLVIFQFPL
Sbjct: 1 MNFEPRATRNDITGAPSNPDVFSYGIETHEAYKKKALTSDIFEEQRKVQEADLVIFQFPL 60
Query: 448 QWFGVPAILKGWFERVLIGEFAYTYAAMYDKGPFRNKKAVLSITTGGSGSMYSLQGIHGD 627
WF VPAILKGW +RVL FA+ YD G + K A+LS+TTGG+ MY+ G+ GD
Sbjct: 61 YWFSVPAILKGWMDRVLCRGFAFDIPGFYDSGFLKGKLALLSLTTGGTAEMYTKDGVSGD 120
Query: 628 MNILLWPIQSGTLHFCGFQVLEPQLTYSIGHTPEDARIQILEEWKKRLENIWDETPLYFA 807
LWP+Q GTLHFCGF+VL PQ+++ + + E+ R +L W +RL++IW E P++
Sbjct: 121 FRYFLWPLQHGTLHFCGFKVLAPQISFGLDVSSEEERKVMLASWAQRLKSIWKEEPIHCT 180
Query: 808 PSSLF 822
P F
Sbjct: 181 PPWYF 185
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 36,105,549
Number of extensions: 972635
Number of successful extensions: 4594
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 4519
Number of HSP's successfully gapped: 6
Length of query: 352
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 250
Effective length of database: 12,553,887
Effective search space: 3138471750
Effective search space used: 3138471750
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002819
(1058 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001153085.1| NAD(P)H dehydrogenase [quinone] 1 [Sus scrof... 504 e-154
>ref|NP_001153085.1| NAD(P)H dehydrogenase [quinone] 1 [Sus scrofa].
Length = 274
Score = 504 bits (1298), Expect(2) = e-154
Identities = 248/248 (100%), Positives = 248/248 (100%)
Frame = +1
Query: 136 MAVRKALIILAHSEKTSFNYAMKEAAVEALKRRGWEVAVSDLYAMNFNPVISRKDITGKL 315
MAVRKALIILAHSEKTSFNYAMKEAAVEALKRRGWEVAVSDLYAMNFNPVISRKDITGKL
Sbjct: 1 MAVRKALIILAHSEKTSFNYAMKEAAVEALKRRGWEVAVSDLYAMNFNPVISRKDITGKL 60
Query: 316 KDPGNFQYPAETALAYKEGRLSPDIVAEQKKVEAADLVIFQFPLQWFGVPAILKGWFERV 495
KDPGNFQYPAETALAYKEGRLSPDIVAEQKKVEAADLVIFQFPLQWFGVPAILKGWFERV
Sbjct: 61 KDPGNFQYPAETALAYKEGRLSPDIVAEQKKVEAADLVIFQFPLQWFGVPAILKGWFERV 120
Query: 496 LIGEFAYTYAAMYDKGPFRNKKAVLSITTGGSGSMYSLQGIHGDMNILLWPIQSGTLHFC 675
LIGEFAYTYAAMYDKGPFRNKKAVLSITTGGSGSMYSLQGIHGDMNILLWPIQSGTLHFC
Sbjct: 121 LIGEFAYTYAAMYDKGPFRNKKAVLSITTGGSGSMYSLQGIHGDMNILLWPIQSGTLHFC 180
Query: 676 GFQVLEPQLTYSIGHTPEDARIQILEEWKKRLENIWDETPLYFAPSSLFDLNFQAGFLMK 855
GFQVLEPQLTYSIGHTPEDARIQILEEWKKRLENIWDETPLYFAPSSLFDLNFQAGFLMK
Sbjct: 181 GFQVLEPQLTYSIGHTPEDARIQILEEWKKRLENIWDETPLYFAPSSLFDLNFQAGFLMK 240
Query: 856 KQVQDEQK 879
KQVQDEQK
Sbjct: 241 KQVQDEQK 248
Score = 58.9 bits (141), Expect(2) = e-154
Identities = 27/27 (100%), Positives = 27/27 (100%)
Frame = +3
Query: 876 KSNKFGLSVGHHLGKSIPTDNQVKARK 956
KSNKFGLSVGHHLGKSIPTDNQVKARK
Sbjct: 248 KSNKFGLSVGHHLGKSIPTDNQVKARK 274
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 26,972,730
Number of extensions: 762559
Number of successful extensions: 3889
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3794
Number of HSP's successfully gapped: 2
Length of query: 352
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 252
Effective length of database: 8,854,232
Effective search space: 2231266464
Effective search space used: 2231266464
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002819
(1058 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr06 716 0.0
>Sscrofa_Chr06
|| Length = 157765593
Score = 716 bits (361), Expect = 0.0
Identities = 382/385 (99%), Gaps = 3/385 (0%)
Strand = Plus / Plus
Query: 652 cagagtggcactttgcatttctgtggcttccaagtcttggaacctcagctgacgtacagc 711
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16247886 cagagtggcactttgcatttctgtggcttccaagtcttggaacctcagctgacgtacagc 16247945
Query: 712 attgggcacactccagaggatgcccgaatccagatcctggaagagtggaagaaacgcctg 771
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16247946 attgggcacactccagaggatgcccgaatccagatcctggaagagtggaagaaacgcctg 16248005
Query: 772 gagaatatttgggatgagacgccactgtactttgcgccaagtagcctctttgacctaaac 831
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16248006 gagaatatttgggatgagacgccactgtactttgcgccaagtagcctctttgacctaaac 16248065
Query: 832 ttccaggcaggattcttaatgaaaaagcaggtgcaggatgagc-aaaaagtaacaaattt 890
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 16248066 ttccaggcaggattcttaatgaaaaagcaggtgcaggatgagcaaaaaagtaacaaattt 16248125
Query: 891 ggtctttctgtgggccatcacttgggcaaatccatcccgacggacaaccaggttaaagct 950
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16248126 ggtctttctgtgggccatcacttgggcaaatccatcccgacggacaaccaggttaaagct 16248185
Query: 951 agaaaataagattcacaagacttttatttcc-tctaaaatgtatcgaaatttaggtttct 1009
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 16248186 agaaaataagattcacaagacttttatttccttctaaaatgtatcgaaatttaggtttc- 16248244
Query: 1010 tttttctgccttccttgacttgctt 1034
|||||||||||||||||||||||||
Sbjct: 16248245 tttttctgccttccttgacttgctt 16248269
Score = 333 bits (168), Expect = 1e-88
Identities = 168/168 (100%)
Strand = Plus / Plus
Query: 142 gtcagaaaagcactgatcatactggcccactccgagaagacgtccttcaattatgccatg 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16241854 gtcagaaaagcactgatcatactggcccactccgagaagacgtccttcaattatgccatg 16241913
Query: 202 aaggaggccgccgtggaggctttgaagaggagaggatgggaggtcgccgtgtcggacctg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16241914 aaggaggccgccgtggaggctttgaagaggagaggatgggaggtcgccgtgtcggacctg 16241973
Query: 262 tatgccatgaacttcaatcccgtcatctccagaaaggacatcacaggt 309
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16241974 tatgccatgaacttcaatcccgtcatctccagaaaggacatcacaggt 16242021
Score = 281 bits (142), Expect = 4e-73
Identities = 142/142 (100%)
Strand = Plus / Plus
Query: 1 gtagccgggcgctccgcgggcagcacgagtgacacctcccaggtcgcagccagaggacct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16238970 gtagccgggcgctccgcgggcagcacgagtgacacctcccaggtcgcagccagaggacct 16239029
Query: 61 acagccccccgcgccttcccagcttgagtcggcccggcaaccagcagcccggccaatctg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16239030 acagccccccgcgccttcccagcttgagtcggcccggcaaccagcagcccggccaatctg 16239089
Query: 121 cgcgccgccggagccatggcgg 142
||||||||||||||||||||||
Sbjct: 16239090 cgcgccgccggagccatggcgg 16239111
Score = 258 bits (130), Expect = 5e-66
Identities = 133/134 (99%)
Strand = Plus / Plus
Query: 305 caggtaaactgaaggaccccgggaactttcagtatcctgccgagactgctctggcttata 364
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16242107 caggtaaactgaaggatcccgggaactttcagtatcctgccgagactgctctggcttata 16242166
Query: 365 aagaaggccgtctgagcccagatattgtggccgaacaaaagaaggtggaagccgcagacc 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16242167 aagaaggccgtctgagcccagatattgtggccgaacaaaagaaggtggaagccgcagacc 16242226
Query: 425 ttgtgatttttcag 438
||||||||||||||
Sbjct: 16242227 ttgtgatttttcag 16242240
Score = 232 bits (117), Expect = 3e-58
Identities = 117/117 (100%)
Strand = Plus / Plus
Query: 436 cagttcccactgcagtggtttggagtccctgctattctgaaaggctggtttgaacgagtg 495
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16245236 cagttcccactgcagtggtttggagtccctgctattctgaaaggctggtttgaacgagtg 16245295
Query: 496 ctcataggggagtttgcttacacatacgctgccatgtatgacaagggacctttccgg 552
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16245296 ctcataggggagtttgcttacacatacgctgccatgtatgacaagggacctttccgg 16245352
Score = 204 bits (103), Expect = 7e-50
Identities = 103/103 (100%)
Strand = Plus / Plus
Query: 552 gaataagaaagcagtgctttccatcaccactggcggcagtggctccatgtactctctgca 611
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16246421 gaataagaaagcagtgctttccatcaccactggcggcagtggctccatgtactctctgca 16246480
Query: 612 gggtatccacggggacatgaatatcctcctctggccaattcag 654
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16246481 gggtatccacggggacatgaatatcctcctctggccaattcag 16246523
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 32,170,242
Number of extensions: 234
Number of successful extensions: 234
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 231
Number of HSP's successfully gapped: 6
Length of query: 1058
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1037
Effective length of database: 2,808,413,156
Effective search space: 2912324442772
Effective search space used: 2912324442772
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)