Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002824
(1293 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001069777.1| family 3, member A protein [Bos taurus]. 423 e-118
Alignment gi|NP_001092617.1| family with sequence similarity 3, member C ... 258 8e-69
Alignment gi|XP_002697035.1| PREDICTED: family with sequence similarity 3... 243 4e-64
Alignment gi|XP_002697034.1| PREDICTED: family with sequence similarity 3... 243 4e-64
Alignment gi|XP_870130.1| PREDICTED: family with sequence similarity 3, m... 243 4e-64
Alignment gi|XP_002702804.1| PREDICTED: family with sequence similarity 3... 243 4e-64
Alignment gi|XP_002685160.1| PREDICTED: cytokine-like protein 2-21-like [... 143 4e-34
Alignment gi|XP_592594.4| PREDICTED: cytokine-like protein 2-21-like [Bos... 143 4e-34
Alignment gi|NP_001019656.2| protein O-linked-mannose beta-1,2-N-acetylgl... 51 2e-06
Alignment gi|XP_002696658.1| PREDICTED: KIAA1199-like [Bos taurus]. 51 3e-06
>ref|NP_001069777.1| family 3, member A protein [Bos taurus].
Length = 228
Score = 423 bits (1087), Expect = e-118
Identities = 207/230 (90%), Positives = 219/230 (95%)
Frame = +1
Query: 424 MRLAGPLRIVVLVLSVGLTWILVSILFGGPGSGFPRIQQLFASPENSVTAEPRARKYKCG 603
MRLAGPLRI+ LV++V +TWI+VSIL G GFP IQQLFAS ENSVTAEPRARKYKCG
Sbjct: 1 MRLAGPLRIMALVITVAVTWIVVSILLSG--LGFPWIQQLFASQENSVTAEPRARKYKCG 58
Query: 604 LPQPCPEEHLAFRMVSGAANVIGPKICLEDKMLMSSVKDNVGRGLNVALVNGVSGELIEA 783
LPQPCPEEHLAFR+VSGAANVIGPKICLED+MLMSSVKDNVGRGLN+ALVNGV+G+LIEA
Sbjct: 59 LPQPCPEEHLAFRVVSGAANVIGPKICLEDRMLMSSVKDNVGRGLNIALVNGVNGDLIEA 118
Query: 784 RAFDMWAGDVNDLLKFIRPLHEGTLVFVASYDDPATKMNEETRKLFSDLGSKNVKDLAFR 963
RAFDMWAGDVNDLLKFIRPLHEGTLVFVASYDDPATKMNEETRKLFSDLGSKNVKDLAFR
Sbjct: 119 RAFDMWAGDVNDLLKFIRPLHEGTLVFVASYDDPATKMNEETRKLFSDLGSKNVKDLAFR 178
Query: 964 DSWVFVGAKGVQNKSPFEQHVKNSRHTNKYEGWPEALEMEGCIPRRTTAS 1113
DSWVFVGAKGVQNKSPFEQH+KNS+HTNKYEGWPEALEMEGCIPRR AS
Sbjct: 179 DSWVFVGAKGVQNKSPFEQHMKNSKHTNKYEGWPEALEMEGCIPRRPAAS 228
>ref|NP_001092617.1| family with sequence similarity 3, member C [Bos taurus].
Length = 227
Score = 258 bits (659), Expect = 8e-69
Identities = 121/227 (53%), Positives = 169/227 (74%), Gaps = 1/227 (0%)
Frame = +1
Query: 424 MRLAGPLRIVVLVLSVGLTWILVSILFGGPGSGFPRIQQLFA-SPENSVTAEPRARKYKC 600
MR+AG ++VV V LT+ ++S +F + LFA S ++V + +YKC
Sbjct: 1 MRVAGAAKLVVAVAVFLLTFYVISQVFEIKMDA--SLGNLFARSALDAVVRSTKPPRYKC 58
Query: 601 GLPQPCPEEHLAFRMVSGAANVIGPKICLEDKMLMSSVKDNVGRGLNVALVNGVSGELIE 780
G+ + CPE+H AF+M SGAANV+GPKICLED +LMS VK+NVGRG+NVALVNG +GELI+
Sbjct: 59 GISKACPEKHFAFKMASGAANVVGPKICLEDNVLMSGVKNNVGRGINVALVNGKTGELID 118
Query: 781 ARAFDMWAGDVNDLLKFIRPLHEGTLVFVASYDDPATKMNEETRKLFSDLGSKNVKDLAF 960
R FDMW G+V ++F++ + +GT+V + +YDD ATK+N+E R+L ++LGS ++ L F
Sbjct: 119 TRFFDMWGGNVAPFIEFLKAIQDGTIVLMGTYDDGATKLNDEARRLIAELGSTSITHLGF 178
Query: 961 RDSWVFVGAKGVQNKSPFEQHVKNSRHTNKYEGWPEALEMEGCIPRR 1101
RD+WVF G KG++ KSPFEQH+KN++ TNKYEGWPE +EMEGCIP++
Sbjct: 179 RDNWVFCGGKGIKTKSPFEQHIKNNKDTNKYEGWPEVVEMEGCIPQK 225
>ref|XP_002697035.1| PREDICTED: family with sequence similarity 3, member D-like isoform 2
[Bos taurus].
Length = 223
Score = 243 bits (619), Expect = 4e-64
Identities = 116/226 (51%), Positives = 163/226 (72%)
Frame = +1
Query: 424 MRLAGPLRIVVLVLSVGLTWILVSILFGGPGSGFPRIQQLFASPENSVTAEPRARKYKCG 603
MRL+G LR + L+ +V TW+ + F + + ++ +NS + K KCG
Sbjct: 1 MRLSGLLRYLALIFAVATTWLFIREYINFNMKTFRLPRWMGSAHKNS----SQLVKNKCG 56
Query: 604 LPQPCPEEHLAFRMVSGAANVIGPKICLEDKMLMSSVKDNVGRGLNVALVNGVSGELIEA 783
L + CP+ AF++VSGAANV+GP +C ED+ +MS VK+NVGRGLNV LV+G +G ++
Sbjct: 57 LSKSCPDNFFAFKIVSGAANVVGPTMCFEDQTIMSPVKNNVGRGLNVVLVDGTTGAVLTQ 116
Query: 784 RAFDMWAGDVNDLLKFIRPLHEGTLVFVASYDDPATKMNEETRKLFSDLGSKNVKDLAFR 963
++FDM++GD + L KF++ + E LV VASYDDP TKMN+E RKLFS+LGS +VK L FR
Sbjct: 117 KSFDMYSGDASLLTKFLKEISEDVLVLVASYDDPGTKMNDEIRKLFSNLGSTHVKQLGFR 176
Query: 964 DSWVFVGAKGVQNKSPFEQHVKNSRHTNKYEGWPEALEMEGCIPRR 1101
DSWVF+GA+ +++KSPFEQ +KN+ TNKY+GWPE LE+EGC+PR+
Sbjct: 177 DSWVFLGAQNLKSKSPFEQFLKNNPETNKYDGWPELLELEGCVPRK 222
>ref|XP_002697034.1| PREDICTED: family with sequence similarity 3, member D-like isoform 1
[Bos taurus].
Length = 223
Score = 243 bits (619), Expect = 4e-64
Identities = 116/226 (51%), Positives = 163/226 (72%)
Frame = +1
Query: 424 MRLAGPLRIVVLVLSVGLTWILVSILFGGPGSGFPRIQQLFASPENSVTAEPRARKYKCG 603
MRL+G LR + L+ +V TW+ + F + + ++ +NS + K KCG
Sbjct: 1 MRLSGLLRYLALIFAVATTWLFIREYINFNMKTFRLPRWMGSAHKNS----SQLVKNKCG 56
Query: 604 LPQPCPEEHLAFRMVSGAANVIGPKICLEDKMLMSSVKDNVGRGLNVALVNGVSGELIEA 783
L + CP+ AF++VSGAANV+GP +C ED+ +MS VK+NVGRGLNV LV+G +G ++
Sbjct: 57 LSKSCPDNFFAFKIVSGAANVVGPTMCFEDQTIMSPVKNNVGRGLNVVLVDGTTGAVLTQ 116
Query: 784 RAFDMWAGDVNDLLKFIRPLHEGTLVFVASYDDPATKMNEETRKLFSDLGSKNVKDLAFR 963
++FDM++GD + L KF++ + E LV VASYDDP TKMN+E RKLFS+LGS +VK L FR
Sbjct: 117 KSFDMYSGDASLLTKFLKEISEDVLVLVASYDDPGTKMNDEIRKLFSNLGSTHVKQLGFR 176
Query: 964 DSWVFVGAKGVQNKSPFEQHVKNSRHTNKYEGWPEALEMEGCIPRR 1101
DSWVF+GA+ +++KSPFEQ +KN+ TNKY+GWPE LE+EGC+PR+
Sbjct: 177 DSWVFLGAQNLKSKSPFEQFLKNNPETNKYDGWPELLELEGCVPRK 222
>ref|XP_870130.1| PREDICTED: family with sequence similarity 3, member D isoform 2 [Bos
taurus].
Length = 223
Score = 243 bits (619), Expect = 4e-64
Identities = 116/226 (51%), Positives = 163/226 (72%)
Frame = +1
Query: 424 MRLAGPLRIVVLVLSVGLTWILVSILFGGPGSGFPRIQQLFASPENSVTAEPRARKYKCG 603
MRL+G LR + L+ +V TW+ + F + + ++ +NS + K KCG
Sbjct: 1 MRLSGLLRYLALIFAVATTWLFIREYINFNMKTFRLPRWMGSAHKNS----SQLVKNKCG 56
Query: 604 LPQPCPEEHLAFRMVSGAANVIGPKICLEDKMLMSSVKDNVGRGLNVALVNGVSGELIEA 783
L + CP+ AF++VSGAANV+GP +C ED+ +MS VK+NVGRGLNV LV+G +G ++
Sbjct: 57 LSKSCPDNFFAFKIVSGAANVVGPTMCFEDQTIMSPVKNNVGRGLNVVLVDGTTGAVLTQ 116
Query: 784 RAFDMWAGDVNDLLKFIRPLHEGTLVFVASYDDPATKMNEETRKLFSDLGSKNVKDLAFR 963
++FDM++GD + L KF++ + E LV VASYDDP TKMN+E RKLFS+LGS +VK L FR
Sbjct: 117 KSFDMYSGDASLLTKFLKEISEDVLVLVASYDDPGTKMNDEIRKLFSNLGSTHVKQLGFR 176
Query: 964 DSWVFVGAKGVQNKSPFEQHVKNSRHTNKYEGWPEALEMEGCIPRR 1101
DSWVF+GA+ +++KSPFEQ +KN+ TNKY+GWPE LE+EGC+PR+
Sbjct: 177 DSWVFLGAQNLKSKSPFEQFLKNNPETNKYDGWPELLELEGCVPRK 222
>ref|XP_002702804.1| PREDICTED: family with sequence similarity 3, member D [Bos taurus].
Length = 223
Score = 243 bits (619), Expect = 4e-64
Identities = 116/226 (51%), Positives = 163/226 (72%)
Frame = +1
Query: 424 MRLAGPLRIVVLVLSVGLTWILVSILFGGPGSGFPRIQQLFASPENSVTAEPRARKYKCG 603
MRL+G LR + L+ +V TW+ + F + + ++ +NS + K KCG
Sbjct: 1 MRLSGLLRYLALIFAVATTWLFIREYINFNMKTFRLPRWMGSAHKNS----SQLVKNKCG 56
Query: 604 LPQPCPEEHLAFRMVSGAANVIGPKICLEDKMLMSSVKDNVGRGLNVALVNGVSGELIEA 783
L + CP+ AF++VSGAANV+GP +C ED+ +MS VK+NVGRGLNV LV+G +G ++
Sbjct: 57 LSKSCPDNFFAFKIVSGAANVVGPTMCFEDQTIMSPVKNNVGRGLNVVLVDGTTGAVLTQ 116
Query: 784 RAFDMWAGDVNDLLKFIRPLHEGTLVFVASYDDPATKMNEETRKLFSDLGSKNVKDLAFR 963
++FDM++GD + L KF++ + E LV VASYDDP TKMN+E RKLFS+LGS +VK L FR
Sbjct: 117 KSFDMYSGDASLLTKFLKEISEDVLVLVASYDDPGTKMNDEIRKLFSNLGSTHVKQLGFR 176
Query: 964 DSWVFVGAKGVQNKSPFEQHVKNSRHTNKYEGWPEALEMEGCIPRR 1101
DSWVF+GA+ +++KSPFEQ +KN+ TNKY+GWPE LE+EGC+PR+
Sbjct: 177 DSWVFLGAQNLKSKSPFEQFLKNNPETNKYDGWPELLELEGCVPRK 222
>ref|XP_002685160.1| PREDICTED: cytokine-like protein 2-21-like [Bos taurus].
Length = 235
Score = 143 bits (360), Expect = 4e-34
Identities = 69/181 (38%), Positives = 112/181 (61%), Gaps = 3/181 (1%)
Frame = +1
Query: 565 VTAEPRARKYKCGLPQPCPEEHLAFRMVSGAANVIGPKICLEDKMLMSSVKDNVGRGLNV 744
V P ++ KC PCPE+ A+R++SG KIC ED+ML+ NV RG+N+
Sbjct: 52 VLKAPTPKRQKCDHWSPCPEDTYAYRLLSGGGRDKYAKICFEDEMLIGEKTGNVARGINI 111
Query: 745 ALVNGVSGELIEARAFDMWAGDVNDLL-KFIRPLHEGTLVFVASYDDPATKMNEETRKLF 921
A+VN V+G++I + FDM+ GD + L+ KFI+ +L+F+ ++DD ++++ E+ +K
Sbjct: 112 AIVNYVTGKVIATQYFDMYEGDNSGLMTKFIQSAPSKSLLFMVTHDDGSSRLKEDAKKAI 171
Query: 922 SDLGSKNVKDLAFRDSWVFVGAKGVQNKSPFEQHVKNSRH--TNKYEGWPEALEMEGCIP 1095
LGS ++++ FR SWVFV AKG + + ++ N N+Y GWP +++EGCIP
Sbjct: 172 EALGSTEIRNMRFRSSWVFVAAKGFELPAGIQREKINHSDDVKNRYSGWPAEIQVEGCIP 231
Query: 1096 R 1098
+
Sbjct: 232 K 232
>ref|XP_592594.4| PREDICTED: cytokine-like protein 2-21-like [Bos taurus].
Length = 235
Score = 143 bits (360), Expect = 4e-34
Identities = 69/181 (38%), Positives = 112/181 (61%), Gaps = 3/181 (1%)
Frame = +1
Query: 565 VTAEPRARKYKCGLPQPCPEEHLAFRMVSGAANVIGPKICLEDKMLMSSVKDNVGRGLNV 744
V P ++ KC PCPE+ A+R++SG KIC ED+ML+ NV RG+N+
Sbjct: 52 VLKAPTPKRQKCDHWSPCPEDTYAYRLLSGGGRDKYAKICFEDEMLIGEKTGNVARGINI 111
Query: 745 ALVNGVSGELIEARAFDMWAGDVNDLL-KFIRPLHEGTLVFVASYDDPATKMNEETRKLF 921
A+VN V+G++I + FDM+ GD + L+ KFI+ +L+F+ ++DD ++++ E+ +K
Sbjct: 112 AIVNYVTGKVIATQYFDMYEGDNSGLMTKFIQSAPSKSLLFMVTHDDGSSRLKEDAKKAI 171
Query: 922 SDLGSKNVKDLAFRDSWVFVGAKGVQNKSPFEQHVKNSRH--TNKYEGWPEALEMEGCIP 1095
LGS ++++ FR SWVFV AKG + + ++ N N+Y GWP +++EGCIP
Sbjct: 172 EALGSTEIRNMRFRSSWVFVAAKGFELPAGIQREKINHSDDVKNRYSGWPAEIQVEGCIP 231
Query: 1096 R 1098
+
Sbjct: 232 K 232
>ref|NP_001019656.2| protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1
[Bos taurus].
Length = 660
Score = 51.2 bits (121), Expect = 2e-06
Identities = 25/106 (23%), Positives = 55/106 (51%), Gaps = 1/106 (0%)
Frame = +1
Query: 679 ICLEDKMLMSSVKDNVGRGLNVALVNGVSGELIEARAFDMWAGDVND-LLKFIRPLHEGT 855
+ ++ ++ GRG++V ++N +G ++ R FD ++ ++ ++ F+ + G
Sbjct: 112 VAVDGTTVLEDEAQEQGRGIHVIVLNQATGHVMAKRVFDTYSPHEDEAMVLFLNMVAPGR 171
Query: 856 LVFVASYDDPATKMNEETRKLFSDLGSKNVKDLAFRDSWVFVGAKG 993
++ D+ + + + + L LGS+ L +RD+W FVG KG
Sbjct: 172 VLICTVKDEGSFHLKDTAKALLRSLGSQAGPALGWRDTWAFVGRKG 217
>ref|XP_002696658.1| PREDICTED: KIAA1199-like [Bos taurus].
Length = 1361
Score = 50.8 bits (120), Expect = 3e-06
Identities = 30/106 (28%), Positives = 55/106 (51%), Gaps = 2/106 (1%)
Frame = +1
Query: 730 RGLNVALVNGVSGELIEARAFDMWAG--DVNDLLKFIRPLHEGTLVFVASYDDPATKMNE 903
RG+ V +++ SG +I + FD + + L +++ + +G ++ VA D+ + +++
Sbjct: 187 RGVIVHVIDPKSGTVIHSDRFDTYRSKKESERLAQYLNAVPDGRILSVAVNDEGSRNLDD 246
Query: 904 ETRKLFSDLGSKNVKDLAFRDSWVFVGAKGVQNKSPFEQHVKNSRH 1041
RK + LGSK+ L FR W F+ KG S E H++ H
Sbjct: 247 VARKAMTKLGSKHFLHLGFRHPWSFLTVKG-NPSSSVEDHIEYHGH 291
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 53,925,605
Number of extensions: 1769990
Number of successful extensions: 10621
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 10554
Number of HSP's successfully gapped: 11
Length of query: 431
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 326
Effective length of database: 14,207,134
Effective search space: 4631525684
Effective search space used: 4631525684
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002824
(1293 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_855396.1| PREDICTED: similar to family 3, member A protei... 451 e-132
Alignment gi|XP_855165.1| PREDICTED: similar to Protein FAM3C precursor (... 256 3e-68
Alignment gi|XP_849095.1| PREDICTED: similar to family with sequence simi... 242 6e-64
Alignment gi|XP_535596.2| PREDICTED: similar to Protein FAM3B precursor (... 130 4e-30
Alignment gi|XP_861276.1| PREDICTED: similar to O-mannosyl N-acetylglucos... 52 1e-06
Alignment gi|XP_861330.1| PREDICTED: similar to O-linked mannose beta1,2-... 51 3e-06
Alignment gi|XP_850366.1| PREDICTED: similar to O-linked mannose beta1,2-... 51 3e-06
Alignment gi|XP_861245.1| PREDICTED: similar to O-linked mannose beta1,2-... 51 3e-06
Alignment gi|XP_539628.2| PREDICTED: similar to O-linked mannose beta1,2-... 51 3e-06
Alignment gi|XP_861188.1| PREDICTED: similar to O-linked mannose beta1,2-... 51 3e-06
>ref|XP_855396.1| PREDICTED: similar to family 3, member A protein [Canis familiaris].
Length = 400
Score = 451 bits (1160), Expect(2) = e-132
Identities = 220/250 (88%), Positives = 231/250 (92%)
Frame = +1
Query: 361 QSALSPNTXXXXXXXXXXEVDMRLAGPLRIVVLVLSVGLTWILVSILFGGPGSGFPRIQQ 540
+SA SP++ VDMRLAGPLRIV L+++VGLTWI+VSIL GGPGSGFPRIQQ
Sbjct: 150 RSAPSPSSAPAGGPHPPGAVDMRLAGPLRIVALIVAVGLTWIVVSILLGGPGSGFPRIQQ 209
Query: 541 LFASPENSVTAEPRARKYKCGLPQPCPEEHLAFRMVSGAANVIGPKICLEDKMLMSSVKD 720
LF SP+NS T EPRARKYKCGLPQPCPEEHLAFRMVSGAANVIGPKICLED+MLMSSVKD
Sbjct: 210 LFISPDNSATPEPRARKYKCGLPQPCPEEHLAFRMVSGAANVIGPKICLEDRMLMSSVKD 269
Query: 721 NVGRGLNVALVNGVSGELIEARAFDMWAGDVNDLLKFIRPLHEGTLVFVASYDDPATKMN 900
NVGRGLN+ALVNGVSGELIEARAFDMWAGDVNDLLKFIRPLHEGTLVFVASYDDPATKMN
Sbjct: 270 NVGRGLNIALVNGVSGELIEARAFDMWAGDVNDLLKFIRPLHEGTLVFVASYDDPATKMN 329
Query: 901 EETRKLFSDLGSKNVKDLAFRDSWVFVGAKGVQNKSPFEQHVKNSRHTNKYEGWPEALEM 1080
EETRKLFSDLGSKNVKDLAFRDSWVFVGAKGVQNKSPFEQHVKNS+HTNKYEGWPEALEM
Sbjct: 330 EETRKLFSDLGSKNVKDLAFRDSWVFVGAKGVQNKSPFEQHVKNSKHTNKYEGWPEALEM 389
Query: 1081 EGCIPRRTTA 1110
GCIPRRT A
Sbjct: 390 GGCIPRRTVA 399
Score = 40.8 bits (94), Expect(2) = e-132
Identities = 36/95 (37%), Positives = 40/95 (42%), Gaps = 8/95 (8%)
Frame = +2
Query: 95 GRPDGAAPDRARLPPRSGTSPAGP-TRAAGRQTQRGGLSSGPPTGGARVRGNHFDFPA-- 265
GRPDGAAP + P +G + P R GR P+ ARVR N FPA
Sbjct: 63 GRPDGAAPAQLAPAPTAGAALHQPGLRGDGRP------EPWAPSEEARVRENRLHFPARR 116
Query: 266 ---LGAPVGTTVSRQVPEAPPVP--ARLLSAFPRS 355
P RQ P P VP A LL PRS
Sbjct: 117 LRPAAGPSSRRSDRQAPAHPWVPASAALLLCGPRS 151
>ref|XP_855165.1| PREDICTED: similar to Protein FAM3C precursor (Protein GS3786) [Canis
familiaris].
Length = 227
Score = 256 bits (654), Expect = 3e-68
Identities = 118/227 (51%), Positives = 169/227 (74%), Gaps = 1/227 (0%)
Frame = +1
Query: 424 MRLAGPLRIVVLVLSVGLTWILVSILFGGPGSGFPRIQQLFA-SPENSVTAEPRARKYKC 600
MR+AG ++VV V LT+ ++S +F + LFA S ++ + +YKC
Sbjct: 1 MRVAGAAKLVVAVAVFLLTFYVISQVFEIKMDA--SLGNLFARSALDTAARSTKPPRYKC 58
Query: 601 GLPQPCPEEHLAFRMVSGAANVIGPKICLEDKMLMSSVKDNVGRGLNVALVNGVSGELIE 780
G+ + CPE+H AF+M SGAANV+GPKICLED +LMS VK+NVGRG+NVALVNG +GE+++
Sbjct: 59 GISKACPEKHFAFKMASGAANVVGPKICLEDNVLMSGVKNNVGRGINVALVNGKTGEVLD 118
Query: 781 ARAFDMWAGDVNDLLKFIRPLHEGTLVFVASYDDPATKMNEETRKLFSDLGSKNVKDLAF 960
+ FDMW GDV ++F++ + +GT+V + +YDD ATK+N+E R+L ++LGS ++ +L F
Sbjct: 119 TKYFDMWGGDVAPFIEFLKSIQDGTIVLMGTYDDGATKLNDEARRLIAELGSTSITNLGF 178
Query: 961 RDSWVFVGAKGVQNKSPFEQHVKNSRHTNKYEGWPEALEMEGCIPRR 1101
RD+WVF G KG++ KSPFEQH+KN++ TNKYEGWPE +EMEGCIP++
Sbjct: 179 RDNWVFCGGKGIKTKSPFEQHIKNNKDTNKYEGWPEVVEMEGCIPQK 225
>ref|XP_849095.1| PREDICTED: similar to family with sequence similarity 3, member D
[Canis familiaris].
Length = 225
Score = 242 bits (617), Expect = 6e-64
Identities = 118/228 (51%), Positives = 161/228 (70%), Gaps = 2/228 (0%)
Frame = +1
Query: 424 MRLAGPLRIVVLVLSVGLTWILVS--ILFGGPGSGFPRIQQLFASPENSVTAEPRARKYK 597
MR++G LR++ L+ ++ TWI + + PR F+S + R K K
Sbjct: 1 MRVSGVLRLLALIFALVTTWIFIRSYVSLDMKTIRLPRWLAGFSSAKKI-----RVVKTK 55
Query: 598 CGLPQPCPEEHLAFRMVSGAANVIGPKICLEDKMLMSSVKDNVGRGLNVALVNGVSGELI 777
CGL +PCP + AF++ SGAANV+GP +C E+ ++MS VK+NVGRGLN+ALVNG +G ++
Sbjct: 56 CGLSKPCPNDFFAFKISSGAANVVGPTVCFENLVIMSPVKNNVGRGLNIALVNGTTGMVL 115
Query: 778 EARAFDMWAGDVNDLLKFIRPLHEGTLVFVASYDDPATKMNEETRKLFSDLGSKNVKDLA 957
+ FDM++GD+ L KF++ + EG LV VASYDDP TKMN+ETRKL S LGS K L
Sbjct: 116 TQKYFDMYSGDIKLLEKFLQEIPEGALVLVASYDDPGTKMNDETRKLLSSLGSSYAKQLG 175
Query: 958 FRDSWVFVGAKGVQNKSPFEQHVKNSRHTNKYEGWPEALEMEGCIPRR 1101
FRDSWVF+GAK +++KSPFEQ +KN+ TNKY+GWPE LE+EGC+PR+
Sbjct: 176 FRDSWVFLGAKNLKDKSPFEQFLKNNPGTNKYDGWPELLELEGCVPRK 223
>ref|XP_535596.2| PREDICTED: similar to Protein FAM3B precursor (Cytokine-like protein
2-21) [Canis familiaris].
Length = 314
Score = 130 bits (326), Expect = 4e-30
Identities = 66/186 (35%), Positives = 112/186 (60%), Gaps = 5/186 (2%)
Frame = +1
Query: 556 ENSVTAEPRARKYKCGLPQPCPEEHLAFRMVSGAANVIGPKICLEDKMLMSSVKDNVGRG 735
E + P ++ KC PCP A+R++SG KIC ED++L+ NVGRG
Sbjct: 128 EKPLLKAPTPKRQKCDHWTPCPLNTYAYRLLSGGGRDKYAKICFEDELLIGEKTGNVGRG 187
Query: 736 LNVALVNGVSGELIEARAFDMWAGDVNDLL-KFIRPLHEGTLVFVASYDDPATKMNEETR 912
+N+A+V+ ++G++ + F+M GD + L+ FI+ +L+F+ + DD A+ + E+ +
Sbjct: 188 INIAIVDYLTGKVRATQYFNMVEGDNSGLMATFIQSAPPKSLLFMVTQDDGASGLKEDAK 247
Query: 913 KLFSDLGSKNVKDLAFRDSWVFVGAKGVQNKSPFEQ----HVKNSRHTNKYEGWPEALEM 1080
K+ LGSK ++++ FR SWVF+ AKG + + ++ H N+R N+Y GWP +++
Sbjct: 248 KVIEALGSKQIRNIKFRSSWVFLTAKGFELPADIQRENINHSDNAR--NRYSGWPAEIQI 305
Query: 1081 EGCIPR 1098
EGCIP+
Sbjct: 306 EGCIPK 311
>ref|XP_861276.1| PREDICTED: similar to O-mannosyl N-acetylglucosaminyltransferase
isoform 2 isoform 5 [Canis familiaris].
Length = 627
Score = 52.0 bits (123), Expect = 1e-06
Identities = 30/115 (26%), Positives = 61/115 (53%), Gaps = 3/115 (2%)
Frame = +1
Query: 727 GRGLNVALVNGVSGELIEARAFDMWAGDVND-LLKFIRPLHEGTLVFVASYDDPATKMNE 903
GRG++V ++N +G ++ R FD ++ ++ ++ F+ + G ++ D+ + + +
Sbjct: 128 GRGIHVIVLNQATGHVMAKRVFDTYSPHEDEAMVLFLNMVAPGRVLICTVKDEGSFHLKD 187
Query: 904 ETRKLFSDLGSKNVKDLAFRDSWVFVGAKGVQ--NKSPFEQHVKNSRHTNKYEGW 1062
+ L LGS+ L +RD+W FVG KG + + E + + R +K EG+
Sbjct: 188 TAKALLRSLGSQAGPALGWRDTWAFVGRKGEAECHWADTELNRRRRRFCSKVEGY 242
>ref|XP_861330.1| PREDICTED: similar to O-linked mannose
beta1,2-N-acetylglucosaminyltransferase isoform 6 [Canis
familiaris].
Length = 660
Score = 50.8 bits (120), Expect = 3e-06
Identities = 25/90 (27%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
Frame = +1
Query: 727 GRGLNVALVNGVSGELIEARAFDMWAGDVND-LLKFIRPLHEGTLVFVASYDDPATKMNE 903
GRG++V ++N +G ++ R FD ++ ++ ++ F+ + G ++ D+ + + +
Sbjct: 128 GRGIHVIVLNQATGHVMAKRVFDTYSPHEDEAMVLFLNMVAPGRVLICTVKDEGSFHLKD 187
Query: 904 ETRKLFSDLGSKNVKDLAFRDSWVFVGAKG 993
+ L LGS+ L +RD+W FVG KG
Sbjct: 188 TAKALLRSLGSQAGPALGWRDTWAFVGRKG 217
>ref|XP_850366.1| PREDICTED: similar to O-linked mannose
beta1,2-N-acetylglucosaminyltransferase isoform 2 [Canis
familiaris].
Length = 686
Score = 50.8 bits (120), Expect = 3e-06
Identities = 25/90 (27%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
Frame = +1
Query: 727 GRGLNVALVNGVSGELIEARAFDMWAGDVND-LLKFIRPLHEGTLVFVASYDDPATKMNE 903
GRG++V ++N +G ++ R FD ++ ++ ++ F+ + G ++ D+ + + +
Sbjct: 128 GRGIHVIVLNQATGHVMAKRVFDTYSPHEDEAMVLFLNMVAPGRVLICTVKDEGSFHLKD 187
Query: 904 ETRKLFSDLGSKNVKDLAFRDSWVFVGAKG 993
+ L LGS+ L +RD+W FVG KG
Sbjct: 188 TAKALLRSLGSQAGPALGWRDTWAFVGRKG 217
>ref|XP_861245.1| PREDICTED: similar to O-linked mannose
beta1,2-N-acetylglucosaminyltransferase isoform 4 [Canis
familiaris].
Length = 660
Score = 50.8 bits (120), Expect = 3e-06
Identities = 25/90 (27%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
Frame = +1
Query: 727 GRGLNVALVNGVSGELIEARAFDMWAGDVND-LLKFIRPLHEGTLVFVASYDDPATKMNE 903
GRG++V ++N +G ++ R FD ++ ++ ++ F+ + G ++ D+ + + +
Sbjct: 128 GRGIHVIVLNQATGHVMAKRVFDTYSPHEDEAMVLFLNMVAPGRVLICTVKDEGSFHLKD 187
Query: 904 ETRKLFSDLGSKNVKDLAFRDSWVFVGAKG 993
+ L LGS+ L +RD+W FVG KG
Sbjct: 188 TAKALLRSLGSQAGPALGWRDTWAFVGRKG 217
>ref|XP_539628.2| PREDICTED: similar to O-linked mannose
beta1,2-N-acetylglucosaminyltransferase isoform 1 [Canis
familiaris].
Length = 660
Score = 50.8 bits (120), Expect = 3e-06
Identities = 25/90 (27%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
Frame = +1
Query: 727 GRGLNVALVNGVSGELIEARAFDMWAGDVND-LLKFIRPLHEGTLVFVASYDDPATKMNE 903
GRG++V ++N +G ++ R FD ++ ++ ++ F+ + G ++ D+ + + +
Sbjct: 128 GRGIHVIVLNQATGHVMAKRVFDTYSPHEDEAMVLFLNMVAPGRVLICTVKDEGSFHLKD 187
Query: 904 ETRKLFSDLGSKNVKDLAFRDSWVFVGAKG 993
+ L LGS+ L +RD+W FVG KG
Sbjct: 188 TAKALLRSLGSQAGPALGWRDTWAFVGRKG 217
>ref|XP_861188.1| PREDICTED: similar to O-linked mannose
beta1,2-N-acetylglucosaminyltransferase isoform 3 [Canis
familiaris].
Length = 660
Score = 50.8 bits (120), Expect = 3e-06
Identities = 25/90 (27%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
Frame = +1
Query: 727 GRGLNVALVNGVSGELIEARAFDMWAGDVND-LLKFIRPLHEGTLVFVASYDDPATKMNE 903
GRG++V ++N +G ++ R FD ++ ++ ++ F+ + G ++ D+ + + +
Sbjct: 128 GRGIHVIVLNQATGHVMAKRVFDTYSPHEDEAMVLFLNMVAPGRVLICTVKDEGSFHLKD 187
Query: 904 ETRKLFSDLGSKNVKDLAFRDSWVFVGAKG 993
+ L LGS+ L +RD+W FVG KG
Sbjct: 188 TAKALLRSLGSQAGPALGWRDTWAFVGRKG 217
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 56,169,476
Number of extensions: 1827232
Number of successful extensions: 11123
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 11034
Number of HSP's successfully gapped: 11
Length of query: 431
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 325
Effective length of database: 15,340,888
Effective search space: 4985788600
Effective search space used: 4985788600
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002824
(1293 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001164603.1| family 3, member A protein isoform 1 precurs... 444 e-124
Alignment gi|NP_068578.2| family 3, member A protein isoform 1 precursor ... 444 e-124
Alignment gi|NP_001164605.1| family 3, member A protein isoform 3 precurs... 399 e-111
Alignment gi|NP_001164604.1| family 3, member A protein isoform 2 precurs... 370 e-102
Alignment gi|NP_620160.1| family with sequence similarity 3, member D pre... 261 1e-69
Alignment gi|NP_001035109.1| family with sequence similarity 3, member C ... 256 3e-68
Alignment gi|NP_055703.1| family with sequence similarity 3, member C pre... 256 3e-68
Alignment gi|NP_478066.3| cytokine-like protein 2-21 isoform a [Homo sapi... 147 2e-35
Alignment gi|NP_996847.1| cytokine-like protein 2-21 isoform b [Homo sapi... 144 2e-34
Alignment gi|NP_061159.1| KIAA1199 precursor [Homo sapiens]. 52 2e-06
>ref|NP_001164603.1| family 3, member A protein isoform 1 precursor [Homo sapiens].
Length = 230
Score = 444 bits (1141), Expect = e-124
Identities = 214/230 (93%), Positives = 226/230 (98%)
Frame = +1
Query: 424 MRLAGPLRIVVLVLSVGLTWILVSILFGGPGSGFPRIQQLFASPENSVTAEPRARKYKCG 603
MRLAGPLRIVVLV+SVG+TWI+VSIL GGPGSGFPRIQQLF SPE+SVTA PRARKYKCG
Sbjct: 1 MRLAGPLRIVVLVVSVGVTWIVVSILLGGPGSGFPRIQQLFTSPESSVTAAPRARKYKCG 60
Query: 604 LPQPCPEEHLAFRMVSGAANVIGPKICLEDKMLMSSVKDNVGRGLNVALVNGVSGELIEA 783
LPQPCPEEHLAFR+VSGAANVIGPKICLEDKMLMSSVKDNVGRGLN+ALVNGVSGELIEA
Sbjct: 61 LPQPCPEEHLAFRVVSGAANVIGPKICLEDKMLMSSVKDNVGRGLNIALVNGVSGELIEA 120
Query: 784 RAFDMWAGDVNDLLKFIRPLHEGTLVFVASYDDPATKMNEETRKLFSDLGSKNVKDLAFR 963
RAFDMWAGDVNDLLKFIRPLHEGTLVFVASYDDPATKMNEETRKLFS+LGS+N K+LAFR
Sbjct: 121 RAFDMWAGDVNDLLKFIRPLHEGTLVFVASYDDPATKMNEETRKLFSELGSRNAKELAFR 180
Query: 964 DSWVFVGAKGVQNKSPFEQHVKNSRHTNKYEGWPEALEMEGCIPRRTTAS 1113
DSWVFVGAKGVQNKSPFEQHVKNS+H+NKYEGWPEALEMEGCIPRR+TAS
Sbjct: 181 DSWVFVGAKGVQNKSPFEQHVKNSKHSNKYEGWPEALEMEGCIPRRSTAS 230
>ref|NP_068578.2| family 3, member A protein isoform 1 precursor [Homo sapiens].
Length = 230
Score = 444 bits (1141), Expect = e-124
Identities = 214/230 (93%), Positives = 226/230 (98%)
Frame = +1
Query: 424 MRLAGPLRIVVLVLSVGLTWILVSILFGGPGSGFPRIQQLFASPENSVTAEPRARKYKCG 603
MRLAGPLRIVVLV+SVG+TWI+VSIL GGPGSGFPRIQQLF SPE+SVTA PRARKYKCG
Sbjct: 1 MRLAGPLRIVVLVVSVGVTWIVVSILLGGPGSGFPRIQQLFTSPESSVTAAPRARKYKCG 60
Query: 604 LPQPCPEEHLAFRMVSGAANVIGPKICLEDKMLMSSVKDNVGRGLNVALVNGVSGELIEA 783
LPQPCPEEHLAFR+VSGAANVIGPKICLEDKMLMSSVKDNVGRGLN+ALVNGVSGELIEA
Sbjct: 61 LPQPCPEEHLAFRVVSGAANVIGPKICLEDKMLMSSVKDNVGRGLNIALVNGVSGELIEA 120
Query: 784 RAFDMWAGDVNDLLKFIRPLHEGTLVFVASYDDPATKMNEETRKLFSDLGSKNVKDLAFR 963
RAFDMWAGDVNDLLKFIRPLHEGTLVFVASYDDPATKMNEETRKLFS+LGS+N K+LAFR
Sbjct: 121 RAFDMWAGDVNDLLKFIRPLHEGTLVFVASYDDPATKMNEETRKLFSELGSRNAKELAFR 180
Query: 964 DSWVFVGAKGVQNKSPFEQHVKNSRHTNKYEGWPEALEMEGCIPRRTTAS 1113
DSWVFVGAKGVQNKSPFEQHVKNS+H+NKYEGWPEALEMEGCIPRR+TAS
Sbjct: 181 DSWVFVGAKGVQNKSPFEQHVKNSKHSNKYEGWPEALEMEGCIPRRSTAS 230
>ref|NP_001164605.1| family 3, member A protein isoform 3 precursor [Homo sapiens].
Length = 213
Score = 399 bits (1024), Expect = e-111
Identities = 197/230 (85%), Positives = 209/230 (90%)
Frame = +1
Query: 424 MRLAGPLRIVVLVLSVGLTWILVSILFGGPGSGFPRIQQLFASPENSVTAEPRARKYKCG 603
MRLAGPLRIVVLV+SVG+TWI+VSIL GGPGSGFPRIQQLF SPE+SVTA PRARKYKCG
Sbjct: 1 MRLAGPLRIVVLVVSVGVTWIVVSILLGGPGSGFPRIQQLFTSPESSVTAAPRARKYKCG 60
Query: 604 LPQPCPEEHLAFRMVSGAANVIGPKICLEDKMLMSSVKDNVGRGLNVALVNGVSGELIEA 783
LPQPCPEEHLAFR+VSGAANVIGPKICLEDKMLMSSVKDNVGRGLN+ALVN
Sbjct: 61 LPQPCPEEHLAFRVVSGAANVIGPKICLEDKMLMSSVKDNVGRGLNIALVN--------- 111
Query: 784 RAFDMWAGDVNDLLKFIRPLHEGTLVFVASYDDPATKMNEETRKLFSDLGSKNVKDLAFR 963
DVNDLLKFIRPLHEGTLVFVASYDDPATKMNEETRKLFS+LGS+N K+LAFR
Sbjct: 112 --------DVNDLLKFIRPLHEGTLVFVASYDDPATKMNEETRKLFSELGSRNAKELAFR 163
Query: 964 DSWVFVGAKGVQNKSPFEQHVKNSRHTNKYEGWPEALEMEGCIPRRTTAS 1113
DSWVFVGAKGVQNKSPFEQHVKNS+H+NKYEGWPEALEMEGCIPRR+TAS
Sbjct: 164 DSWVFVGAKGVQNKSPFEQHVKNSKHSNKYEGWPEALEMEGCIPRRSTAS 213
>ref|NP_001164604.1| family 3, member A protein isoform 2 precursor [Homo sapiens].
Length = 192
Score = 370 bits (951), Expect = e-102
Identities = 177/189 (93%), Positives = 186/189 (98%)
Frame = +1
Query: 547 ASPENSVTAEPRARKYKCGLPQPCPEEHLAFRMVSGAANVIGPKICLEDKMLMSSVKDNV 726
A PE+SVTA PRARKYKCGLPQPCPEEHLAFR+VSGAANVIGPKICLEDKMLMSSVKDNV
Sbjct: 4 AGPESSVTAAPRARKYKCGLPQPCPEEHLAFRVVSGAANVIGPKICLEDKMLMSSVKDNV 63
Query: 727 GRGLNVALVNGVSGELIEARAFDMWAGDVNDLLKFIRPLHEGTLVFVASYDDPATKMNEE 906
GRGLN+ALVNGVSGELIEARAFDMWAGDVNDLLKFIRPLHEGTLVFVASYDDPATKMNEE
Sbjct: 64 GRGLNIALVNGVSGELIEARAFDMWAGDVNDLLKFIRPLHEGTLVFVASYDDPATKMNEE 123
Query: 907 TRKLFSDLGSKNVKDLAFRDSWVFVGAKGVQNKSPFEQHVKNSRHTNKYEGWPEALEMEG 1086
TRKLFS+LGS+N K+LAFRDSWVFVGAKGVQNKSPFEQHVKNS+H+NKYEGWPEALEMEG
Sbjct: 124 TRKLFSELGSRNAKELAFRDSWVFVGAKGVQNKSPFEQHVKNSKHSNKYEGWPEALEMEG 183
Query: 1087 CIPRRTTAS 1113
CIPRR+TAS
Sbjct: 184 CIPRRSTAS 192
>ref|NP_620160.1| family with sequence similarity 3, member D precursor [Homo sapiens].
Length = 224
Score = 261 bits (667), Expect = 1e-69
Identities = 125/224 (55%), Positives = 164/224 (73%)
Frame = +1
Query: 424 MRLAGPLRIVVLVLSVGLTWILVSILFGGPGSGFPRIQQLFASPENSVTAEPRARKYKCG 603
MR++G LR++ L+ ++ TW+ + + L ASP T E + +KYKCG
Sbjct: 1 MRVSGVLRLLALIFAIVTTWMFIRSYMSFSMKTIRLPRWLAASP----TKEIQVKKYKCG 56
Query: 604 LPQPCPEEHLAFRMVSGAANVIGPKICLEDKMLMSSVKDNVGRGLNVALVNGVSGELIEA 783
L +PCP + AF++ SGAANV+GP +C ED+M+MS VK+NVGRGLN+ALVNG +G ++
Sbjct: 57 LIKPCPANYFAFKICSGAANVVGPTMCFEDRMIMSPVKNNVGRGLNIALVNGTTGAVLGQ 116
Query: 784 RAFDMWAGDVNDLLKFIRPLHEGTLVFVASYDDPATKMNEETRKLFSDLGSKNVKDLAFR 963
+AFDM++GDV L+KF++ + G LV VASYDDP TKMN+E+RKLFSDLGS K L FR
Sbjct: 117 KAFDMYSGDVMHLVKFLKEIPGGALVLVASYDDPGTKMNDESRKLFSDLGSSYAKQLGFR 176
Query: 964 DSWVFVGAKGVQNKSPFEQHVKNSRHTNKYEGWPEALEMEGCIP 1095
DSWVF+GAK ++ KSPFEQ +KNS TNKYEGWPE LEMEGC+P
Sbjct: 177 DSWVFIGAKDLRGKSPFEQFLKNSPDTNKYEGWPELLEMEGCMP 220
>ref|NP_001035109.1| family with sequence similarity 3, member C precursor [Homo sapiens].
Length = 227
Score = 256 bits (654), Expect = 3e-68
Identities = 118/227 (51%), Positives = 168/227 (74%), Gaps = 1/227 (0%)
Frame = +1
Query: 424 MRLAGPLRIVVLVLSVGLTWILVSILFGGPGSGFPRIQQLFA-SPENSVTAEPRARKYKC 600
MR+AG ++VV V LT+ ++S +F + LFA S ++ + +YKC
Sbjct: 1 MRVAGAAKLVVAVAVFLLTFYVISQVFEIKMDA--SLGNLFARSALDTAARSTKPPRYKC 58
Query: 601 GLPQPCPEEHLAFRMVSGAANVIGPKICLEDKMLMSSVKDNVGRGLNVALVNGVSGELIE 780
G+ + CPE+H AF+M SGAANV+GPKICLED +LMS VK+NVGRG+NVAL NG +GE+++
Sbjct: 59 GISKACPEKHFAFKMASGAANVVGPKICLEDNVLMSGVKNNVGRGINVALANGKTGEVLD 118
Query: 781 ARAFDMWAGDVNDLLKFIRPLHEGTLVFVASYDDPATKMNEETRKLFSDLGSKNVKDLAF 960
+ FDMW GDV ++F++ + +GT+V + +YDD ATK+N+E R+L +DLGS ++ +L F
Sbjct: 119 TKYFDMWGGDVAPFIEFLKAIQDGTIVLMGTYDDGATKLNDEARRLIADLGSTSITNLGF 178
Query: 961 RDSWVFVGAKGVQNKSPFEQHVKNSRHTNKYEGWPEALEMEGCIPRR 1101
RD+WVF G KG++ KSPFEQH+KN++ TNKYEGWPE +EMEGCIP++
Sbjct: 179 RDNWVFCGGKGIKTKSPFEQHIKNNKDTNKYEGWPEVVEMEGCIPQK 225
>ref|NP_055703.1| family with sequence similarity 3, member C precursor [Homo sapiens].
Length = 227
Score = 256 bits (654), Expect = 3e-68
Identities = 118/227 (51%), Positives = 168/227 (74%), Gaps = 1/227 (0%)
Frame = +1
Query: 424 MRLAGPLRIVVLVLSVGLTWILVSILFGGPGSGFPRIQQLFA-SPENSVTAEPRARKYKC 600
MR+AG ++VV V LT+ ++S +F + LFA S ++ + +YKC
Sbjct: 1 MRVAGAAKLVVAVAVFLLTFYVISQVFEIKMDA--SLGNLFARSALDTAARSTKPPRYKC 58
Query: 601 GLPQPCPEEHLAFRMVSGAANVIGPKICLEDKMLMSSVKDNVGRGLNVALVNGVSGELIE 780
G+ + CPE+H AF+M SGAANV+GPKICLED +LMS VK+NVGRG+NVAL NG +GE+++
Sbjct: 59 GISKACPEKHFAFKMASGAANVVGPKICLEDNVLMSGVKNNVGRGINVALANGKTGEVLD 118
Query: 781 ARAFDMWAGDVNDLLKFIRPLHEGTLVFVASYDDPATKMNEETRKLFSDLGSKNVKDLAF 960
+ FDMW GDV ++F++ + +GT+V + +YDD ATK+N+E R+L +DLGS ++ +L F
Sbjct: 119 TKYFDMWGGDVAPFIEFLKAIQDGTIVLMGTYDDGATKLNDEARRLIADLGSTSITNLGF 178
Query: 961 RDSWVFVGAKGVQNKSPFEQHVKNSRHTNKYEGWPEALEMEGCIPRR 1101
RD+WVF G KG++ KSPFEQH+KN++ TNKYEGWPE +EMEGCIP++
Sbjct: 179 RDNWVFCGGKGIKTKSPFEQHIKNNKDTNKYEGWPEVVEMEGCIPQK 225
>ref|NP_478066.3| cytokine-like protein 2-21 isoform a [Homo sapiens].
Length = 235
Score = 147 bits (371), Expect = 2e-35
Identities = 81/231 (35%), Positives = 126/231 (54%), Gaps = 8/231 (3%)
Frame = +1
Query: 430 LAGPLRIVVLVLSVGLT-----WILVSILFGGPGSGFPRIQQLFASPENSVTAEPRARKY 594
LAG L VV V+ L ++L ++ P S + + E V P ++
Sbjct: 4 LAGGLLKVVFVVFASLCAWYSGYLLAELIPDAPLSS--AAYSIRSIGERPVLKAPVPKRQ 61
Query: 595 KCGLPQPCPEEHLAFRMVSGAANVIGPKICLEDKMLMSSVKDNVGRGLNVALVNGVSGEL 774
KC PCP + A+R++SG KIC ED +LM NV RG+N+A+VN V+G +
Sbjct: 62 KCDHWTPCPSDTYAYRLLSGGGRSKYAKICFEDNLLMGEQLGNVARGINIAIVNYVTGNV 121
Query: 775 IEARAFDMWAGD-VNDLLKFIRPLHEGTLVFVASYDDPATKMNEETRKLFSDLGSKNVKD 951
R FDM+ GD + KFI+ +L+F+ +YDD +T++N + + LGSK +++
Sbjct: 122 TATRCFDMYEGDNSGPMTKFIQSAAPKSLLFMVTYDDGSTRLNNDAKNAIEALGSKEIRN 181
Query: 952 LAFRDSWVFVGAKGVQNKSPFEQHVKN--SRHTNKYEGWPEALEMEGCIPR 1098
+ FR SWVF+ AKG++ S ++ N N+Y GWP +++EGCIP+
Sbjct: 182 MKFRSSWVFIAAKGLELPSEIQREKINHSDAKNNRYSGWPAEIQIEGCIPK 232
>ref|NP_996847.1| cytokine-like protein 2-21 isoform b [Homo sapiens].
Length = 187
Score = 144 bits (363), Expect = 2e-34
Identities = 68/177 (38%), Positives = 106/177 (59%), Gaps = 3/177 (1%)
Frame = +1
Query: 577 PRARKYKCGLPQPCPEEHLAFRMVSGAANVIGPKICLEDKMLMSSVKDNVGRGLNVALVN 756
P ++ KC PCP + A+R++SG KIC ED +LM NV RG+N+A+VN
Sbjct: 8 PVPKRQKCDHWTPCPSDTYAYRLLSGGGRSKYAKICFEDNLLMGEQLGNVARGINIAIVN 67
Query: 757 GVSGELIEARAFDMWAGD-VNDLLKFIRPLHEGTLVFVASYDDPATKMNEETRKLFSDLG 933
V+G + R FDM+ GD + KFI+ +L+F+ +YDD +T++N + + LG
Sbjct: 68 YVTGNVTATRCFDMYEGDNSGPMTKFIQSAAPKSLLFMVTYDDGSTRLNNDAKNAIEALG 127
Query: 934 SKNVKDLAFRDSWVFVGAKGVQNKSPFEQHVKN--SRHTNKYEGWPEALEMEGCIPR 1098
SK ++++ FR SWVF+ AKG++ S ++ N N+Y GWP +++EGCIP+
Sbjct: 128 SKEIRNMKFRSSWVFIAAKGLELPSEIQREKINHSDAKNNRYSGWPAEIQIEGCIPK 184
>ref|NP_061159.1| KIAA1199 precursor [Homo sapiens].
Length = 1361
Score = 51.6 bits (122), Expect = 2e-06
Identities = 30/106 (28%), Positives = 56/106 (52%), Gaps = 2/106 (1%)
Frame = +1
Query: 730 RGLNVALVNGVSGELIEARAFDMWAG--DVNDLLKFIRPLHEGTLVFVASYDDPATKMNE 903
RG+ V +++ SG +I + FD + + L++++ + +G ++ VA D+ + +++
Sbjct: 187 RGVIVHVIDPKSGTVIHSDRFDTYRSKKESERLVQYLNAVPDGRILSVAVNDEGSRNLDD 246
Query: 904 ETRKLFSDLGSKNVKDLAFRDSWVFVGAKGVQNKSPFEQHVKNSRH 1041
RK + LGSK+ L FR W F+ KG S E H++ H
Sbjct: 247 MARKAMTKLGSKHFLHLGFRHPWSFLTVKG-NPSSSVEDHIEYHGH 291
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 54,591,611
Number of extensions: 1743791
Number of successful extensions: 9620
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 9526
Number of HSP's successfully gapped: 12
Length of query: 431
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 326
Effective length of database: 14,835,944
Effective search space: 4836517744
Effective search space used: 4836517744
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002824
(1293 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_079749.1| family 3, member A protein precursor [Mus muscu... 434 e-122
Alignment gi|NP_613053.3| D6Wsu176e protein precursor [Mus musculus]. 256 3e-68
Alignment gi|NP_666162.1| oncoprotein induced transcript 1 precursor [Mus... 231 1e-60
Alignment gi|NP_065647.1| cytokine-like protein 2-21 precursor [Mus muscu... 140 3e-33
Alignment gi|NP_084062.2| protein O-linked-mannose beta-1,2-N-acetylgluco... 52 1e-06
Alignment gi|NP_080927.1| protein O-linked-mannose beta-1,2-N-acetylgluco... 51 2e-06
Alignment gi|NP_109653.3| KIAA1199 homolog precursor [Mus musculus]. 51 2e-06
>ref|NP_079749.1| family 3, member A protein precursor [Mus musculus].
Length = 230
Score = 434 bits (1116), Expect = e-122
Identities = 207/229 (90%), Positives = 220/229 (96%)
Frame = +1
Query: 424 MRLAGPLRIVVLVLSVGLTWILVSILFGGPGSGFPRIQQLFASPENSVTAEPRARKYKCG 603
MRLAGPLRIV L++ +GLTWILV+IL GGPG G PRIQQ F SPENSVTAEPRARKYKCG
Sbjct: 1 MRLAGPLRIVALIIIMGLTWILVTILLGGPGVGLPRIQQFFTSPENSVTAEPRARKYKCG 60
Query: 604 LPQPCPEEHLAFRMVSGAANVIGPKICLEDKMLMSSVKDNVGRGLNVALVNGVSGELIEA 783
LPQPCPEEHL+FR+VSGAANVIGPKICLEDKMLMSSVKDNVGRGLN+ALVNGVSGEL+EA
Sbjct: 61 LPQPCPEEHLSFRIVSGAANVIGPKICLEDKMLMSSVKDNVGRGLNIALVNGVSGELLEA 120
Query: 784 RAFDMWAGDVNDLLKFIRPLHEGTLVFVASYDDPATKMNEETRKLFSDLGSKNVKDLAFR 963
RAFDMWAGDVNDLLKFIRPLHEGTLVFVASYDDPATKMNEETRKLFS+LGS+N KDLAFR
Sbjct: 121 RAFDMWAGDVNDLLKFIRPLHEGTLVFVASYDDPATKMNEETRKLFSELGSRNAKDLAFR 180
Query: 964 DSWVFVGAKGVQNKSPFEQHVKNSRHTNKYEGWPEALEMEGCIPRRTTA 1110
DSWVFVGAKGVQNKSPFEQH+KNS+HTNKYEGWPEALEMEGCIPRR+ A
Sbjct: 181 DSWVFVGAKGVQNKSPFEQHMKNSKHTNKYEGWPEALEMEGCIPRRSIA 229
>ref|NP_613053.3| D6Wsu176e protein precursor [Mus musculus].
Length = 227
Score = 256 bits (654), Expect = 3e-68
Identities = 119/227 (52%), Positives = 168/227 (74%), Gaps = 1/227 (0%)
Frame = +1
Query: 424 MRLAGPLRIVVLVLSVGLTWILVSILFGGPGSGFPRIQQLFA-SPENSVTAEPRARKYKC 600
MR+AG ++VV V LT+ ++S +F + LFA S +S + +YKC
Sbjct: 1 MRVAGAAKLVVAVAVFLLTFYVISQVFEIKMDA--SLGNLFARSALDSAIRSTKPPRYKC 58
Query: 601 GLPQPCPEEHLAFRMVSGAANVIGPKICLEDKMLMSSVKDNVGRGLNVALVNGVSGELIE 780
G+ + CPE+H AF+M SGAANV+GPKICLED +LMS VK+NVGRG+N+ALVNG +GE+I+
Sbjct: 59 GISKACPEKHFAFKMASGAANVVGPKICLEDNVLMSGVKNNVGRGINIALVNGKTGEVID 118
Query: 781 ARAFDMWAGDVNDLLKFIRPLHEGTLVFVASYDDPATKMNEETRKLFSDLGSKNVKDLAF 960
+ FDMW GDV ++F++ + +GT+V +A+YDD ATK+ +E R+L ++LGS ++ L F
Sbjct: 119 TKFFDMWGGDVAPFIEFLKTIQDGTVVLMATYDDGATKLTDEARRLIAELGSTSITSLGF 178
Query: 961 RDSWVFVGAKGVQNKSPFEQHVKNSRHTNKYEGWPEALEMEGCIPRR 1101
RD+WVF G KG++ KSPFEQH+KN++ TNKYEGWPE +EMEGCIP++
Sbjct: 179 RDNWVFCGGKGIKTKSPFEQHIKNNKETNKYEGWPEVVEMEGCIPQK 225
>ref|NP_666162.1| oncoprotein induced transcript 1 precursor [Mus musculus].
Length = 223
Score = 231 bits (588), Expect = 1e-60
Identities = 111/226 (49%), Positives = 158/226 (69%)
Frame = +1
Query: 424 MRLAGPLRIVVLVLSVGLTWILVSILFGGPGSGFPRIQQLFASPENSVTAEPRARKYKCG 603
MR+AG +R+VV + ++ W+ + + L +P++ T K KCG
Sbjct: 1 MRVAGLIRVVVFIFTIVTMWVFLRSYTSFSRKTIRLPRWLGITPKDIQTP-----KSKCG 55
Query: 604 LPQPCPEEHLAFRMVSGAANVIGPKICLEDKMLMSSVKDNVGRGLNVALVNGVSGELIEA 783
L + CP AF++ SGAANV+GP +C ED+++MS V++NVGRGLNVALVNG +G++++
Sbjct: 56 LSKICPNNFFAFKISSGAANVVGPSMCFEDEIIMSPVRNNVGRGLNVALVNGSTGQVMKK 115
Query: 784 RAFDMWAGDVNDLLKFIRPLHEGTLVFVASYDDPATKMNEETRKLFSDLGSKNVKDLAFR 963
+FDM++GD LL F+ + + TLV VASYDDP TKMN++ + LFS+LGS K L FR
Sbjct: 116 DSFDMYSGDPQLLLNFLTEIPDSTLVLVASYDDPGTKMNDKIKTLFSNLGSSYAKQLGFR 175
Query: 964 DSWVFVGAKGVQNKSPFEQHVKNSRHTNKYEGWPEALEMEGCIPRR 1101
DSWVFVGAK +++KSP+EQ +KN+ TNKY+GWPE LE+EGC+PR+
Sbjct: 176 DSWVFVGAKDLKSKSPYEQFLKNNPETNKYDGWPELLELEGCVPRK 221
>ref|NP_065647.1| cytokine-like protein 2-21 precursor [Mus musculus].
Length = 235
Score = 140 bits (352), Expect = 3e-33
Identities = 69/184 (37%), Positives = 109/184 (59%), Gaps = 3/184 (1%)
Frame = +1
Query: 556 ENSVTAEPRARKYKCGLPQPCPEEHLAFRMVSGAANVIGPKICLEDKMLMSSVKDNVGRG 735
E V P ++ KC PCP + A+R++SG KIC ED++L+ NV RG
Sbjct: 49 ERPVLKAPAPKRQKCDHWSPCPPDTYAYRLLSGGGRDKYAKICFEDEVLIGEKTGNVARG 108
Query: 736 LNVALVNGVSGELIEARAFDMWAGD-VNDLLKFIRPLHEGTLVFVASYDDPATKMNEETR 912
+N+A+VN +G++I + FDM+ GD + KFI+ +L+F+ ++DD ++K+ + +
Sbjct: 109 INIAVVNYETGKVIATKYFDMYEGDNSGPMAKFIQSTPSKSLLFMVTHDDGSSKLKAQAK 168
Query: 913 KLFSDLGSKNVKDLAFRDSWVFVGAKGVQNKSPFEQHVKN--SRHTNKYEGWPEALEMEG 1086
LGSK +K++ FR SWVFV AKG + S E+ N + N+Y GWP +++EG
Sbjct: 169 DAIEALGSKEIKNMKFRSSWVFVAAKGFELPSEIEREKINHSDQSRNRYAGWPAEIQIEG 228
Query: 1087 CIPR 1098
CIP+
Sbjct: 229 CIPK 232
>ref|NP_084062.2| protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1
isoform 2 [Mus musculus].
Length = 627
Score = 52.0 bits (123), Expect = 1e-06
Identities = 30/115 (26%), Positives = 61/115 (53%), Gaps = 3/115 (2%)
Frame = +1
Query: 727 GRGLNVALVNGVSGELIEARAFDMWAGDVND-LLKFIRPLHEGTLVFVASYDDPATKMNE 903
GRG++V ++N +G ++ R FD ++ ++ ++ F+ + G ++ D+ + + +
Sbjct: 128 GRGIHVIVLNQATGHVMAKRVFDTYSPHEDEAMVLFLNMVAPGRVLICTVKDEGSFHLKD 187
Query: 904 ETRKLFSDLGSKNVKDLAFRDSWVFVGAKGVQ--NKSPFEQHVKNSRHTNKYEGW 1062
+ L LGS+ L +RD+W FVG KG + + E + + R +K EG+
Sbjct: 188 TAKALLRSLGSQAGPALGWRDTWAFVGRKGEAECHWADTELNRRRRRFCSKVEGY 242
>ref|NP_080927.1| protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1
isoform 1 [Mus musculus].
Length = 660
Score = 50.8 bits (120), Expect = 2e-06
Identities = 25/90 (27%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
Frame = +1
Query: 727 GRGLNVALVNGVSGELIEARAFDMWAGDVND-LLKFIRPLHEGTLVFVASYDDPATKMNE 903
GRG++V ++N +G ++ R FD ++ ++ ++ F+ + G ++ D+ + + +
Sbjct: 128 GRGIHVIVLNQATGHVMAKRVFDTYSPHEDEAMVLFLNMVAPGRVLICTVKDEGSFHLKD 187
Query: 904 ETRKLFSDLGSKNVKDLAFRDSWVFVGAKG 993
+ L LGS+ L +RD+W FVG KG
Sbjct: 188 TAKALLRSLGSQAGPALGWRDTWAFVGRKG 217
>ref|NP_109653.3| KIAA1199 homolog precursor [Mus musculus].
Length = 1361
Score = 50.8 bits (120), Expect = 2e-06
Identities = 28/106 (26%), Positives = 55/106 (51%), Gaps = 2/106 (1%)
Frame = +1
Query: 730 RGLNVALVNGVSGELIEARAFDMWAG--DVNDLLKFIRPLHEGTLVFVASYDDPATKMNE 903
RG+ V +++ G ++ + FD + + L++++ + +G ++ VA D+ + +++
Sbjct: 187 RGVIVHVIDAKLGTVVHSDRFDTYRSKKESERLVQYLNAVPDGRILSVAVNDEGSRNLDD 246
Query: 904 ETRKLFSDLGSKNVKDLAFRDSWVFVGAKGVQNKSPFEQHVKNSRH 1041
RK + LGSK+ L FR W F+ KG S E H++ H
Sbjct: 247 TARKAMTKLGSKHFLHLGFRHPWSFITVKG-NPSSSVEDHIEYHGH 291
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 45,579,320
Number of extensions: 1410204
Number of successful extensions: 7275
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 7205
Number of HSP's successfully gapped: 7
Length of query: 431
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 327
Effective length of database: 12,493,815
Effective search space: 4085477505
Effective search space used: 4085477505
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002824
(1293 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003360557.1| PREDICTED: protein FAM3A-like isoform 1 [Sus... 467 e-132
Alignment gi|XP_003360558.1| PREDICTED: protein FAM3A-like isoform 2 [Sus... 387 e-108
Alignment gi|XP_003134785.1| PREDICTED: protein FAM3C-like [Sus scrofa]. 258 7e-69
Alignment gi|XP_003358536.1| PREDICTED: protein FAM3D-like [Sus scrofa]. 151 9e-37
Alignment gi|XP_003132827.1| PREDICTED: protein FAM3B-like [Sus scrofa]. 140 2e-33
Alignment gi|XP_003132330.2| PREDICTED: protein FAM3D-like [Sus scrofa]. 106 3e-23
Alignment gi|NP_001072137.1| N-acetylglucosaminyltransferase I.2 [Sus scr... 51 2e-06
>ref|XP_003360557.1| PREDICTED: protein FAM3A-like isoform 1 [Sus scrofa].
Length = 230
Score = 467 bits (1202), Expect = e-132
Identities = 230/230 (100%), Positives = 230/230 (100%)
Frame = +1
Query: 424 MRLAGPLRIVVLVLSVGLTWILVSILFGGPGSGFPRIQQLFASPENSVTAEPRARKYKCG 603
MRLAGPLRIVVLVLSVGLTWILVSILFGGPGSGFPRIQQLFASPENSVTAEPRARKYKCG
Sbjct: 1 MRLAGPLRIVVLVLSVGLTWILVSILFGGPGSGFPRIQQLFASPENSVTAEPRARKYKCG 60
Query: 604 LPQPCPEEHLAFRMVSGAANVIGPKICLEDKMLMSSVKDNVGRGLNVALVNGVSGELIEA 783
LPQPCPEEHLAFRMVSGAANVIGPKICLEDKMLMSSVKDNVGRGLNVALVNGVSGELIEA
Sbjct: 61 LPQPCPEEHLAFRMVSGAANVIGPKICLEDKMLMSSVKDNVGRGLNVALVNGVSGELIEA 120
Query: 784 RAFDMWAGDVNDLLKFIRPLHEGTLVFVASYDDPATKMNEETRKLFSDLGSKNVKDLAFR 963
RAFDMWAGDVNDLLKFIRPLHEGTLVFVASYDDPATKMNEETRKLFSDLGSKNVKDLAFR
Sbjct: 121 RAFDMWAGDVNDLLKFIRPLHEGTLVFVASYDDPATKMNEETRKLFSDLGSKNVKDLAFR 180
Query: 964 DSWVFVGAKGVQNKSPFEQHVKNSRHTNKYEGWPEALEMEGCIPRRTTAS 1113
DSWVFVGAKGVQNKSPFEQHVKNSRHTNKYEGWPEALEMEGCIPRRTTAS
Sbjct: 181 DSWVFVGAKGVQNKSPFEQHVKNSRHTNKYEGWPEALEMEGCIPRRTTAS 230
>ref|XP_003360558.1| PREDICTED: protein FAM3A-like isoform 2 [Sus scrofa].
Length = 192
Score = 387 bits (993), Expect = e-108
Identities = 188/189 (99%), Positives = 188/189 (99%)
Frame = +1
Query: 547 ASPENSVTAEPRARKYKCGLPQPCPEEHLAFRMVSGAANVIGPKICLEDKMLMSSVKDNV 726
A PENSVTAEPRARKYKCGLPQPCPEEHLAFRMVSGAANVIGPKICLEDKMLMSSVKDNV
Sbjct: 4 AGPENSVTAEPRARKYKCGLPQPCPEEHLAFRMVSGAANVIGPKICLEDKMLMSSVKDNV 63
Query: 727 GRGLNVALVNGVSGELIEARAFDMWAGDVNDLLKFIRPLHEGTLVFVASYDDPATKMNEE 906
GRGLNVALVNGVSGELIEARAFDMWAGDVNDLLKFIRPLHEGTLVFVASYDDPATKMNEE
Sbjct: 64 GRGLNVALVNGVSGELIEARAFDMWAGDVNDLLKFIRPLHEGTLVFVASYDDPATKMNEE 123
Query: 907 TRKLFSDLGSKNVKDLAFRDSWVFVGAKGVQNKSPFEQHVKNSRHTNKYEGWPEALEMEG 1086
TRKLFSDLGSKNVKDLAFRDSWVFVGAKGVQNKSPFEQHVKNSRHTNKYEGWPEALEMEG
Sbjct: 124 TRKLFSDLGSKNVKDLAFRDSWVFVGAKGVQNKSPFEQHVKNSRHTNKYEGWPEALEMEG 183
Query: 1087 CIPRRTTAS 1113
CIPRRTTAS
Sbjct: 184 CIPRRTTAS 192
>ref|XP_003134785.1| PREDICTED: protein FAM3C-like [Sus scrofa].
Length = 227
Score = 258 bits (658), Expect = 7e-69
Identities = 120/227 (52%), Positives = 168/227 (74%), Gaps = 1/227 (0%)
Frame = +1
Query: 424 MRLAGPLRIVVLVLSVGLTWILVSILFGGPGSGFPRIQQLFASPENSVTAEP-RARKYKC 600
MR+AG ++VV V LT+ ++S +F + LFA A P + +YKC
Sbjct: 1 MRVAGAAKLVVAVAVFLLTFYVISQVFEIKMDA--SLGNLFARSALDTAARPTKPPRYKC 58
Query: 601 GLPQPCPEEHLAFRMVSGAANVIGPKICLEDKMLMSSVKDNVGRGLNVALVNGVSGELIE 780
G+ + CPE+H AF+M SGAANV+GPKICLED +LMS VK+NVGRG+NVALVNG +GEL++
Sbjct: 59 GISKACPEKHFAFKMASGAANVVGPKICLEDNVLMSGVKNNVGRGINVALVNGKTGELLD 118
Query: 781 ARAFDMWAGDVNDLLKFIRPLHEGTLVFVASYDDPATKMNEETRKLFSDLGSKNVKDLAF 960
R FDMW G+V ++F++ + +GT+V + +YDD ATK+N+E R+L ++LGS ++ +L F
Sbjct: 119 TRYFDMWGGNVAPFIEFLKSIQDGTIVLMGTYDDGATKLNDEARRLIAELGSTSIINLGF 178
Query: 961 RDSWVFVGAKGVQNKSPFEQHVKNSRHTNKYEGWPEALEMEGCIPRR 1101
RD+WVF G KG++ KSPFEQH+KN++ TNKYEGWPE +EMEGCIP++
Sbjct: 179 RDNWVFCGGKGIKTKSPFEQHIKNNKDTNKYEGWPEVVEMEGCIPQK 225
>ref|XP_003358536.1| PREDICTED: protein FAM3D-like [Sus scrofa].
Length = 128
Score = 151 bits (381), Expect = 9e-37
Identities = 67/113 (59%), Positives = 91/113 (80%)
Frame = +1
Query: 763 SGELIEARAFDMWAGDVNDLLKFIRPLHEGTLVFVASYDDPATKMNEETRKLFSDLGSKN 942
+G ++ ++FDM++GD + L+KF++ + GTLV VASYDDP TK+N+E R+LFS+LGS
Sbjct: 14 TGTILGQKSFDMYSGDPSLLVKFLKEIPAGTLVLVASYDDPGTKLNDEIRQLFSNLGSAY 73
Query: 943 VKDLAFRDSWVFVGAKGVQNKSPFEQHVKNSRHTNKYEGWPEALEMEGCIPRR 1101
K L FRDSWVF+GAK ++ KSPFEQ +KN+ TNKYEGWPE LE+EGC+PR+
Sbjct: 74 TKQLGFRDSWVFLGAKDLKGKSPFEQFLKNNPDTNKYEGWPELLELEGCVPRK 126
>ref|XP_003132827.1| PREDICTED: protein FAM3B-like [Sus scrofa].
Length = 235
Score = 140 bits (352), Expect = 2e-33
Identities = 77/231 (33%), Positives = 128/231 (55%), Gaps = 9/231 (3%)
Frame = +1
Query: 433 AGPLRIVVLVLSVGLTW----ILVSILFGGPGSGFPRIQQLFASPENSVTAEPRARKYKC 600
AG L+ V V + W +L ++ P S + + + E V P ++ KC
Sbjct: 6 AGTLKAVFFVFASLCAWYSGYLLAELVPDMPLSS--AVYSIRSIGEKPVLRAPAPKRQKC 63
Query: 601 GLPQPCPEEHLAFRMVSGAANVIGPKICLEDKMLMSSVKDNVGRGLNVALVNGVSGELIE 780
PCP A+R++SG KIC ED+ML+ NV RG+N+A+VN +G++I
Sbjct: 64 DHWTPCPPNTYAYRLLSGGGRDKFAKICFEDEMLIGEKTGNVARGINIAIVNYATGKVIA 123
Query: 781 ARAFDMWAGD-VNDLLKFIRPLHEGTLVFVASYDDPATKMNEETRKLFSDLGSKNVKDLA 957
+ FDM+ GD + FI+ +L+F+ ++DD ++++ E+ +K LGSK ++++
Sbjct: 124 TQYFDMFEGDNSGPMTAFIQSAPSKSLLFMVTHDDGSSRLKEDAKKAIESLGSKEIRNMR 183
Query: 958 FRDSWVFVGAKGVQNKSPFEQ----HVKNSRHTNKYEGWPEALEMEGCIPR 1098
FR SWVF+ AKG + + E+ H N++ N+Y GWP +++EGCIP+
Sbjct: 184 FRSSWVFLAAKGFELPAGIEREKINHSDNAK--NRYSGWPAEIQVEGCIPK 232
>ref|XP_003132330.2| PREDICTED: protein FAM3D-like [Sus scrofa].
Length = 181
Score = 106 bits (264), Expect = 3e-23
Identities = 46/70 (65%), Positives = 58/70 (82%)
Frame = +1
Query: 892 KMNEETRKLFSDLGSKNVKDLAFRDSWVFVGAKGVQNKSPFEQHVKNSRHTNKYEGWPEA 1071
K+N+E R+LFS+LGS K L FRDSWVF+GAK ++ KSPFEQ +KN+ TNKYEGWPE
Sbjct: 110 KLNDEIRQLFSNLGSAYTKQLGFRDSWVFLGAKDLKGKSPFEQFLKNNPDTNKYEGWPEL 169
Query: 1072 LEMEGCIPRR 1101
LE+EGC+PR+
Sbjct: 170 LELEGCVPRK 179
>ref|NP_001072137.1| N-acetylglucosaminyltransferase I.2 [Sus scrofa].
Length = 660
Score = 50.8 bits (120), Expect = 2e-06
Identities = 25/90 (27%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
Frame = +1
Query: 727 GRGLNVALVNGVSGELIEARAFDMWAGDVND-LLKFIRPLHEGTLVFVASYDDPATKMNE 903
GRG++V ++N +G ++ R FD ++ ++ ++ F+ + G ++ D+ + + +
Sbjct: 128 GRGIHVIVLNQATGHVMAKRVFDTYSPHEDEAMVLFLNMVAPGRVLICTVKDEGSFHLKD 187
Query: 904 ETRKLFSDLGSKNVKDLAFRDSWVFVGAKG 993
+ L LGS+ L +RD+W FVG KG
Sbjct: 188 TAKALLRSLGSQAGPALGWRDTWAFVGRKG 217
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 34,981,228
Number of extensions: 1157837
Number of successful extensions: 7045
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 6989
Number of HSP's successfully gapped: 7
Length of query: 431
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 329
Effective length of database: 8,804,438
Effective search space: 2896660102
Effective search space used: 2896660102
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002824
(1293 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_ChrX 720 0.0
>Sscrofa_ChrX
|| Length = 144288218
Score = 720 bits (363), Expect = 0.0
Identities = 363/363 (100%)
Strand = Plus / Plus
Query: 1 gtgggccgggctcccgccccggggccgccattgccaggcttctcgggccgcgcagcgcag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143560384 gtgggccgggctcccgccccggggccgccattgccaggcttctcgggccgcgcagcgcag 143560443
Query: 61 ctccctggcctcgccgcgccgagcggagcggagcggccggcctgacggggctgcccccga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143560444 ctccctggcctcgccgcgccgagcggagcggagcggccggcctgacggggctgcccccga 143560503
Query: 121 ccgagctcgcctccccccgcggtcaggcacgtccccggccggcccaacccgcgccgccgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143560504 ccgagctcgcctccccccgcggtcaggcacgtccccggccggcccaacccgcgccgccgg 143560563
Query: 181 ccgccagacccagaggggcggcctgagctcggggcctcccacgggaggggcccgcgtccg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143560564 ccgccagacccagaggggcggcctgagctcggggcctcccacgggaggggcccgcgtccg 143560623
Query: 241 agggaaccacttcgacttcccagccctcggagctcccgtgggcacgaccgtgagccgaca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143560624 agggaaccacttcgacttcccagccctcggagctcccgtgggcacgaccgtgagccgaca 143560683
Query: 301 ggttccagaggcccctccggtcccggcaaggcttctctccgcgttcccgaggagcctggt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143560684 ggttccagaggcccctccggtcccggcaaggcttctctccgcgttcccgaggagcctggt 143560743
Query: 361 cag 363
|||
Sbjct: 143560744 cag 143560746
Score = 504 bits (254), Expect = e-140
Identities = 271/277 (97%)
Strand = Plus / Plus
Query: 1017 gcagcacgtgaagaacagcaggcacaccaataagtacgaaggctggcccgaggcgctcga 1076
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143568809 gcagcacgtgaagaacagcaggcacaccaataagtacgaaggctggcccgaggcgctcga 143568868
Query: 1077 gatggaaggctgcatcccgcgaaggaccacagccagctagcgaccgagcccgggacagca 1136
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143568869 gatggagggctgcatcccgcgaaggaccacagccagctagcgaccgagcccgggacagca 143568928
Query: 1137 cgagggacgcagcgtgtgcccagcccggggaaggctgagcccacgcccggccagnagcgt 1196
||||||||||||||||||||||||||||||| | |||||||||||||||||||| |||||
Sbjct: 143568929 cgagggacgcagcgtgtgcccagcccggggaggcctgagcccacgcccggccaggagcgt 143568988
Query: 1197 tctcttgccccgacacgtgggggcgccaaggcggtgaccagcgacccagccctgagctgt 1256
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 143568989 tctcttgccccgacacgtgggggcgccaaggcggtgaccagcgaccaggccctgagctgt 143569048
Query: 1257 cgtgagggtgcacggccgccgaccctgtcgcgcctgg 1293
|||||||||||||||||||||||||||||||||||||
Sbjct: 143569049 cgtgagggtgcacggccgccgaccctgtcgcgcctgg 143569085
Score = 254 bits (128), Expect = 1e-64
Identities = 128/128 (100%)
Strand = Plus / Plus
Query: 572 cagagccacgggccaggaagtacaagtgcggcctgccccagccatgtcctgaggagcacc 631
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143566821 cagagccacgggccaggaagtacaagtgcggcctgccccagccatgtcctgaggagcacc 143566880
Query: 632 tggccttccgcatggtcagcggggctgccaacgtcattggacccaagatctgcctggagg 691
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143566881 tggccttccgcatggtcagcggggctgccaacgtcattggacccaagatctgcctggagg 143566940
Query: 692 acaagatg 699
||||||||
Sbjct: 143566941 acaagatg 143566948
Score = 252 bits (127), Expect = 4e-64
Identities = 127/127 (100%)
Strand = Plus / Plus
Query: 894 gatgaacgaagagaccaggaagctgttcagtgacctgggcagcaagaacgtcaaggacct 953
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143567769 gatgaacgaagagaccaggaagctgttcagtgacctgggcagcaagaacgtcaaggacct 143567828
Query: 954 ggccttccgggacagctgggtgtttgtgggggccaagggtgtgcagaacaagagcccctt 1013
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143567829 ggccttccgggacagctgggtgtttgtgggggccaagggtgtgcagaacaagagcccctt 143567888
Query: 1014 tgagcag 1020
|||||||
Sbjct: 143567889 tgagcag 143567895
Score = 234 bits (118), Expect = 1e-58
Identities = 118/118 (100%)
Strand = Plus / Plus
Query: 434 caggccccctccgcatcgtggtcctggtcctctccgtgggcctcacctggatcctggtga 493
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143563562 caggccccctccgcatcgtggtcctggtcctctccgtgggcctcacctggatcctggtga 143563621
Query: 494 gcatcctcttcggcgggcctggcagtggctttccccgcatccagcagctttttgccag 551
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143563622 gcatcctcttcggcgggcctggcagtggctttccccgcatccagcagctttttgccag 143563679
Score = 226 bits (114), Expect = 2e-56
Identities = 117/118 (99%)
Strand = Plus / Minus
Query: 434 caggccccctccgcatcgtggtcctggtcctctccgtgggcctcacctggatcctggtga 493
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142687307 caggccccctccgcatcgtggtcctggtcctctccgtgggcctcacctggatcctggtga 142687248
Query: 494 gcatcctcttcggcgggcctggcagtggctttccccgcatccagcagctttttgccag 551
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142687247 gcatcctcttcggcaggcctggcagtggctttccccgcatccagcagctttttgccag 142687190
Score = 172 bits (87), Expect = 3e-40
Identities = 87/87 (100%)
Strand = Plus / Plus
Query: 808 gatgtcaacgacctgctgaagtttattcggccgctgcatgaaggcaccctggtgtttgtg 867
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143567607 gatgtcaacgacctgctgaagtttattcggccgctgcatgaaggcaccctggtgtttgtg 143567666
Query: 868 gcctcctacgacgaccccgccactaag 894
|||||||||||||||||||||||||||
Sbjct: 143567667 gcctcctacgacgaccccgccactaag 143567693
Score = 153 bits (77), Expect = 3e-34
Identities = 77/77 (100%)
Strand = Plus / Plus
Query: 361 cagagcgctctgtccccaaacactgcacctgccggcggccccaacccagcgggagaagtg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143560845 cagagcgctctgtccccaaacactgcacctgccggcggccccaacccagcgggagaagtg 143560904
Query: 421 gacatgaggttggcagg 437
|||||||||||||||||
Sbjct: 143560905 gacatgaggttggcagg 143560921
Score = 119 bits (60), Expect = 4e-24
Identities = 60/60 (100%)
Strand = Plus / Plus
Query: 699 gctcatgagcagtgtcaaggacaacgtgggccgtggactgaacgtcgccctggtgaacgg 758
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143567044 gctcatgagcagtgtcaaggacaacgtgggccgtggactgaacgtcgccctggtgaacgg 143567103
Score = 103 bits (52), Expect = 2e-19
Identities = 52/52 (100%)
Strand = Plus / Plus
Query: 757 ggggtaagcggagagctcattgaggcccgcgccttcgacatgtgggcaggcg 808
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143567320 ggggtaagcggagagctcattgaggcccgcgccttcgacatgtgggcaggcg 143567371
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 27,171,708
Number of extensions: 147
Number of successful extensions: 147
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 147
Number of HSP's successfully gapped: 10
Length of query: 1293
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1272
Effective length of database: 2,808,413,156
Effective search space: 3572301534432
Effective search space used: 3572301534432
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)