Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002848
(1001 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001030470.1| sodium/potassium-transporting ATPase subunit... 446 e-125
Alignment gi|NP_777102.1| sodium/potassium-transporting ATPase subunit be... 208 7e-54
Alignment gi|NP_001095389.1| protein ATP1B4 [Bos taurus]. 165 5e-41
Alignment gi|NP_001193069.1| potassium-transporting ATPase subunit beta [... 164 9e-41
Alignment gi|XP_002692046.1| PREDICTED: hydrogen/potassium-exchanging ATP... 164 9e-41
Alignment gi|NP_001030411.1| sodium/potassium-transporting ATPase subunit... 69 6e-12
>ref|NP_001030470.1| sodium/potassium-transporting ATPase subunit beta-3 [Bos taurus].
Length = 279
Score = 446 bits (1148), Expect = e-125
Identities = 215/279 (77%), Positives = 232/279 (83%)
Frame = +3
Query: 150 MTKKEKKSFNQSMAEWKLFLYNPTTGEFLGRSAKSWGLIXXXXXXXXXXXXXXXXXTMWV 329
MTK +KKSFNQS+AEWKLF+YN TTGEFLGR+AKSWGLI TMW
Sbjct: 1 MTKTDKKSFNQSLAEWKLFIYNRTTGEFLGRTAKSWGLILLFYLVFYGFLAALFSFTMWA 60
Query: 330 MLQTLNDEVPKYRDQISSPGLMVFPKPVSALDYSFSVSDPDSYKGYIDDLKKFLKPYDLE 509
MLQTLNDEVPKYRDQI SPGLMVFPKPVSALD+SFS+SD +SY+GYIDDLKKFLKPY LE
Sbjct: 61 MLQTLNDEVPKYRDQIPSPGLMVFPKPVSALDFSFSLSDAESYQGYIDDLKKFLKPYGLE 120
Query: 510 EQKNLTDCTDGKFLEQKGPHYDACRFPLNLLEACSGEIDPQFGYSRGNPCILVKMNRIIG 689
EQKNLTDCT+G F EQKGP Y AC+FPL LLEACSG DP FGY G PCILVKMNRIIG
Sbjct: 121 EQKNLTDCTNGTFFEQKGPEYTACQFPLALLEACSGVDDPTFGYQEGKPCILVKMNRIIG 180
Query: 690 LKPQGEPRIECISKGESTAVLSTYPPNGKIDIKYFPYYGKKLHGNYLQPLVAVQLTFDAG 869
LKPQGEPRIEC K ESTA LSTYP NG ID+KYFPYYGKKLHGNYLQPLVAVQ+ F +
Sbjct: 181 LKPQGEPRIECTGKSESTAFLSTYPSNGTIDLKYFPYYGKKLHGNYLQPLVAVQVGFGSD 240
Query: 870 NDMNEVTVECKIDGSPNLKNQDDRDKFLGRVAFKVTVHA 986
D+ EV VECKIDGSPNLK Q+DRDKFLGRVAFK+T+HA
Sbjct: 241 ADVREVMVECKIDGSPNLKTQNDRDKFLGRVAFKITMHA 279
>ref|NP_777102.1| sodium/potassium-transporting ATPase subunit beta-2 [Bos taurus].
Length = 290
Score = 208 bits (529), Expect = 7e-54
Identities = 121/290 (41%), Positives = 168/290 (57%), Gaps = 14/290 (4%)
Frame = +3
Query: 156 KKEKKSFNQSMAEWKLFLYNPTTGEFLGRSAKSWGLIXXXXXXXXXXXXXXXXXTMWVML 335
+KEKKS Q + EWK F++NP T +F+GR+ SW I TMWVML
Sbjct: 4 QKEKKSCGQVVEEWKEFVWNPRTHQFMGRTGTSWAFILLFYLVFYGFLTAMFTLTMWVML 63
Query: 336 QTLNDEVPKYRDQISSPGLMVFPKPVSALDYSFSVSDPDSYKGYIDDLKKFLKPYD--LE 509
QT++D PKY+D++++PGLM+ PK + LD +VSD +S+ ++ L KFL+PY+ ++
Sbjct: 64 QTVSDHTPKYQDRLATPGLMIRPKTEN-LDVIVNVSDTESWDQHVQKLNKFLEPYNDSIQ 122
Query: 510 EQKNLTDCTDGKFLEQKGP---HYD--ACRFPLNLLEACSGEIDP-QFGYSRGNPCILVK 671
QKN C G++ EQ +Y AC+F L CSG DP +GYS G PC+ +K
Sbjct: 123 AQKNDV-CRPGRYYEQPDNGVLNYPKRACQFNRTQLGDCSGIGDPTHYGYSTGQPCVFIK 181
Query: 672 MNRIIGLKPQGEP--RIECISK----GESTAVLSTYPPNGKIDIKYFPYYGKKLHGNYLQ 833
MNR+I + C+ K E+ +P NG ID+ YFPYYGKK H NY Q
Sbjct: 182 MNRVISFYAGANQSMNVTCVGKRDEDAENLGNFVMFPANGNIDLIYFPYYGKKFHVNYTQ 241
Query: 834 PLVAVQLTFDAGNDMNEVTVECKIDGSPNLKNQDDRDKFLGRVAFKVTVH 983
PLVAV+ N EV VEC+I+ + N+ D+RDKF RVAFK+ ++
Sbjct: 242 PLVAVKFLNVTPN--VEVNVECRINAA-NIATDDERDKFAPRVAFKLRIN 288
>ref|NP_001095389.1| protein ATP1B4 [Bos taurus].
Length = 355
Score = 165 bits (418), Expect = 5e-41
Identities = 99/293 (33%), Positives = 165/293 (56%), Gaps = 18/293 (6%)
Frame = +3
Query: 156 KKEKKSFNQSM--AEWKL------FLYNPTTGEFLGRSAKSWGLIXXXXXXXXXXXXXXX 311
K+E+ S +Q A W+ +L++P L R+ +SW LI
Sbjct: 66 KEEEDSHSQETDSAWWRKLQIVNEYLWDPEKRTSLARTGQSWSLILVIYFFFYASLAAVI 125
Query: 312 XXTMWVMLQTLNDEVPKYRDQISSPGLMVFPKPVSALDYSFSVSDPDSYKGYIDDLKKFL 491
M+ + T++ +P + +++ PG+M+ P S L+++F+VS+PD+++ Y+ L FL
Sbjct: 126 TLCMYTLFLTISPYMPTFTERVKPPGVMIRPFAHS-LNFNFNVSEPDTWQHYVISLNGFL 184
Query: 492 KPYD--LEEQKNLTDCTDGKFLEQKGPHYD---ACRFPLNLLEACSGEIDPQFGYSRGNP 656
+ Y+ L+E+ N+ DC G++ Q G + AC+F + L+ CSG DP FGYS G P
Sbjct: 185 QGYNDSLQEEMNV-DCPPGQYFIQDGDEDEDKKACQFKRSFLKNCSGLEDPTFGYSTGQP 243
Query: 657 CILVKMNRIIGLKPQ-GEP-RIEC-ISKGESTAV--LSTYPPNGKIDIKYFPYYGKKLHG 821
CIL+KMNRI+G +P+ G+P ++ C + +G+ + ++ YP + D++Y+PYYGK H
Sbjct: 244 CILLKMNRIVGFRPERGDPVKVSCKVQRGDENDIRSINYYPESASFDLRYYPYYGKLTHV 303
Query: 822 NYLQPLVAVQLTFDAGNDMNEVTVECKIDGSPNLKNQDDRDKFLGRVAFKVTV 980
NY PLVA+ T N V V+C++ G + N D+F+GRV F + +
Sbjct: 304 NYTSPLVAMHFTDVVKN--QAVPVQCQLKGK-GIINDVINDRFVGRVIFTLNI 353
>ref|NP_001193069.1| potassium-transporting ATPase subunit beta [Bos taurus].
Length = 290
Score = 164 bits (416), Expect = 9e-41
Identities = 95/287 (33%), Positives = 152/287 (52%), Gaps = 13/287 (4%)
Frame = +3
Query: 159 KEKKSFNQSMAEWKLFLYNPTTGEFLGRSAKSWGLIXXXXXXXXXXXXXXXXXTMWVMLQ 338
+EKKS Q M E++ + +NP TG+ LGR+ W I ++V++
Sbjct: 5 QEKKSCGQRMEEFRRYCWNPDTGQMLGRTLSRWVWISLYYVAFYVVMTGIFALCIYVLMC 64
Query: 339 TLNDEVPKYRDQISSPGLMVFPKPVS--ALDYSFSVSDPDSYKGYIDDLKKFLKPYDLEE 512
T++ P Y+DQ+ SPG+ + P LD S++VSD ++ G L+ FL Y
Sbjct: 65 TIDPYTPDYQDQLKSPGVTLRPDTYGDKGLDISYNVSDNRTWTGLTQALRHFLAGYSPAA 124
Query: 513 QKNLTDCTDGKFLEQK---GPHYD--ACRFPLNLLEACSGEIDPQFGYSRGNPCILVKMN 677
Q++ +CT ++ Q+ P++ +C+F ++L+ CSG+ DP FG++ G PC ++KMN
Sbjct: 125 QEDNINCTSERYFFQERFLAPNHTKFSCKFTADMLQNCSGQPDPTFGFAEGKPCFIIKMN 184
Query: 678 RIIGLKPQGE--PRIECI----SKGESTAVLSTYPPNGKIDIKYFPYYGKKLHGNYLQPL 839
RI+ P PR++C + + +PPNG + YFPYYGKK +Y PL
Sbjct: 185 RIVKFLPGNSTAPRVDCAFLDQHRDAPALQVEYFPPNGSYSLHYFPYYGKKAQPHYSNPL 244
Query: 840 VAVQLTFDAGNDMNEVTVECKIDGSPNLKNQDDRDKFLGRVAFKVTV 980
VA +L N EV V CKI + ++ + D + G+V FK+T+
Sbjct: 245 VAAKLLNVPKN--KEVVVVCKI-LAEHVTFDNPHDPYEGKVEFKLTI 288
>ref|XP_002692046.1| PREDICTED: hydrogen/potassium-exchanging ATPase 4B-like [Bos
taurus].
Length = 290
Score = 164 bits (416), Expect = 9e-41
Identities = 95/287 (33%), Positives = 152/287 (52%), Gaps = 13/287 (4%)
Frame = +3
Query: 159 KEKKSFNQSMAEWKLFLYNPTTGEFLGRSAKSWGLIXXXXXXXXXXXXXXXXXTMWVMLQ 338
+EKKS Q M E++ + +NP TG+ LGR+ W I ++V++
Sbjct: 5 QEKKSCGQRMEEFRRYCWNPDTGQMLGRTLSRWVWISLYYVAFYVVMTGIFALCIYVLMC 64
Query: 339 TLNDEVPKYRDQISSPGLMVFPKPVS--ALDYSFSVSDPDSYKGYIDDLKKFLKPYDLEE 512
T++ P Y+DQ+ SPG+ + P LD S++VSD ++ G L+ FL Y
Sbjct: 65 TIDPYTPDYQDQLKSPGVTLRPDTYGDKGLDISYNVSDNRTWTGLTQALRHFLAGYSPAA 124
Query: 513 QKNLTDCTDGKFLEQK---GPHYD--ACRFPLNLLEACSGEIDPQFGYSRGNPCILVKMN 677
Q++ +CT ++ Q+ P++ +C+F ++L+ CSG+ DP FG++ G PC ++KMN
Sbjct: 125 QEDNINCTSERYFFQERFLAPNHTKFSCKFTADMLQNCSGQPDPTFGFAEGKPCFIIKMN 184
Query: 678 RIIGLKPQGE--PRIECI----SKGESTAVLSTYPPNGKIDIKYFPYYGKKLHGNYLQPL 839
RI+ P PR++C + + +PPNG + YFPYYGKK +Y PL
Sbjct: 185 RIVKFLPGNSTAPRVDCAFLDQHRDAPALQVEYFPPNGSYSLHYFPYYGKKAQPHYSNPL 244
Query: 840 VAVQLTFDAGNDMNEVTVECKIDGSPNLKNQDDRDKFLGRVAFKVTV 980
VA +L N EV V CKI + ++ + D + G+V FK+T+
Sbjct: 245 VAAKLLNVPKN--KEVVVVCKI-LAEHVTFDNPHDPYEGKVEFKLTI 288
>ref|NP_001030411.1| sodium/potassium-transporting ATPase subunit beta-1 [Bos taurus].
Length = 133
Score = 68.9 bits (167), Expect = 6e-12
Identities = 35/102 (34%), Positives = 54/102 (52%)
Frame = +3
Query: 195 WKLFLYNPTTGEFLGRSAKSWGLIXXXXXXXXXXXXXXXXXTMWVMLQTLNDEVPKYRDQ 374
WK F++N EFLGR+ SW I T+ VML T+++ P Y+D+
Sbjct: 12 WKKFIWNSEKKEFLGRTGGSWFKILLFYVIFYGCLAGIFIGTIQVMLLTISEFKPTYQDR 71
Query: 375 ISSPGLMVFPKPVSALDYSFSVSDPDSYKGYIDDLKKFLKPY 500
++ PGL P+ + + +F +DP SY Y+D++ FLK Y
Sbjct: 72 VAPPGLTQIPQ-IQKTEIAFRPNDPKSYMTYVDNIDNFLKKY 112
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 35,496,558
Number of extensions: 915459
Number of successful extensions: 2355
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 2338
Number of HSP's successfully gapped: 6
Length of query: 333
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 230
Effective length of database: 14,273,310
Effective search space: 3282861300
Effective search space used: 3282861300
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002848
(1001 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_534292.2| PREDICTED: similar to Sodium/potassium-transpor... 406 e-113
Alignment gi|XP_546597.2| PREDICTED: similar to Na+/K+ -ATPase beta 2 sub... 211 1e-54
Alignment gi|NP_001003328.1| potassium-transporting ATPase subunit beta [... 164 1e-40
Alignment gi|XP_538158.2| PREDICTED: similar to ATPase, (Na+)/K+ transpor... 155 4e-38
Alignment gi|NP_001003283.1| sodium/potassium-transporting ATPase subunit... 141 8e-34
>ref|XP_534292.2| PREDICTED: similar to Sodium/potassium-transporting ATPase beta-3
chain (Sodium/potassium-dependent ATPase beta-3 subunit)
(ATPB-3) [Canis familiaris].
Length = 269
Score = 406 bits (1043), Expect = e-113
Identities = 197/267 (73%), Positives = 220/267 (82%), Gaps = 1/267 (0%)
Frame = +3
Query: 189 AEWKLFLYNPTTGEFLGRSAKSWGLIXXXXXXXXXXXXXXXXXTMWVMLQTLNDEVPKYR 368
++ KLF+YNPTTGEFLGR+AKSWGLI TMW MLQTLNDEVPKYR
Sbjct: 3 SQQKLFIYNPTTGEFLGRTAKSWGLILLFYLVFYGFLAALFSFTMWAMLQTLNDEVPKYR 62
Query: 369 DQISSPGLMVFPKPVSALDYSFSVSDPDSYKGYIDDLKKFLKPYDLEEQKNLTDCTDGKF 548
DQI SPGL VFPKPV+AL+YSF+VSDP+SYKGYI+DL+KFLKPY+ EEQKNLT C+DG
Sbjct: 63 DQIPSPGLTVFPKPVTALEYSFTVSDPESYKGYIEDLRKFLKPYESEEQKNLTACSDGAL 122
Query: 549 LEQKGPHYDACRFPLNLLEACSGEIDPQFGYSRGNPCILVKMNRIIGLKPQGEPRIECIS 728
EQKGP Y AC+FPL LL+ACSG DP FGYSRG+PC+LVKMNRIIGLKPQG PRIEC S
Sbjct: 123 FEQKGPVYSACQFPLPLLQACSGVDDPDFGYSRGSPCVLVKMNRIIGLKPQGMPRIECTS 182
Query: 729 KGESTAVLSTYPPNGKIDIKYFPYYGKKLHGNYLQPLVAVQLTFDA-GNDMNEVTVECKI 905
K E+TA LSTYP NG ID+KYFPYYGKKLH +YLQPLVAVQ++F+A + NEVTVECKI
Sbjct: 183 KSENTATLSTYPFNGVIDLKYFPYYGKKLHVSYLQPLVAVQVSFNATSSTTNEVTVECKI 242
Query: 906 DGSPNLKNQDDRDKFLGRVAFKVTVHA 986
DGSPNLKNQDDRDKFLGRV FKV A
Sbjct: 243 DGSPNLKNQDDRDKFLGRVVFKVIARA 269
>ref|XP_546597.2| PREDICTED: similar to Na+/K+ -ATPase beta 2 subunit [Canis
familiaris].
Length = 290
Score = 211 bits (536), Expect = 1e-54
Identities = 121/290 (41%), Positives = 169/290 (58%), Gaps = 14/290 (4%)
Frame = +3
Query: 156 KKEKKSFNQSMAEWKLFLYNPTTGEFLGRSAKSWGLIXXXXXXXXXXXXXXXXXTMWVML 335
+KEKKS Q + EWK F++NP T +F+GR+ SW I TMWVML
Sbjct: 4 QKEKKSCGQVVEEWKEFVWNPRTHQFMGRTGTSWAFILLFYLVFYGFLTAMFTLTMWVML 63
Query: 336 QTLNDEVPKYRDQISSPGLMVFPKPVSALDYSFSVSDPDSYKGYIDDLKKFLKPYD--LE 509
QT++D PKY+D++++PGLM+ PK + LD +VSD +S+ ++ L KFL+PY+ ++
Sbjct: 64 QTVSDHTPKYQDRLATPGLMIRPKTEN-LDVIVNVSDTESWDQHVQKLNKFLEPYNDSIQ 122
Query: 510 EQKNLTDCTDGKFLEQKGP---HYD--ACRFPLNLLEACSGEIDP-QFGYSRGNPCILVK 671
QKN C G++ EQ +Y AC+F L CSG DP +GYS G PC+ +K
Sbjct: 123 AQKNDV-CRPGRYYEQPDNGVLNYPKRACQFNRTQLGDCSGIGDPTHYGYSTGQPCVFIK 181
Query: 672 MNRIIGLKPQGEP--RIECISK----GESTAVLSTYPPNGKIDIKYFPYYGKKLHGNYLQ 833
MNR+I + C+ K E+ +P NG ID+ YFPYYGK+ H NY Q
Sbjct: 182 MNRVINFYAGANQSMNVTCVGKRDEDAENLGNFVMFPANGNIDLMYFPYYGKRFHVNYTQ 241
Query: 834 PLVAVQLTFDAGNDMNEVTVECKIDGSPNLKNQDDRDKFLGRVAFKVTVH 983
PLVAV+ N EV VEC+I+ + N+ D+RDKF GRVAFK+ ++
Sbjct: 242 PLVAVKFLNVTPN--VEVNVECRINAA-NIATDDERDKFAGRVAFKLRIN 288
>ref|NP_001003328.1| potassium-transporting ATPase subunit beta [Canis lupus
familiaris].
Length = 290
Score = 164 bits (415), Expect = 1e-40
Identities = 96/287 (33%), Positives = 151/287 (52%), Gaps = 13/287 (4%)
Frame = +3
Query: 159 KEKKSFNQSMAEWKLFLYNPTTGEFLGRSAKSWGLIXXXXXXXXXXXXXXXXXTMWVMLQ 338
+EKKS +Q M E++ + +NP TG+ LGR+ W I ++ ++
Sbjct: 5 QEKKSCSQRMEEFQRYCWNPDTGQMLGRTLSRWVWISLYYVAFYVVMTGIFALCIYTLMC 64
Query: 339 TLNDEVPKYRDQISSPGLMVFPKPVS--ALDYSFSVSDPDSYKGYIDDLKKFLKPYDLEE 512
TL+ P Y+DQ+ SPG+ + P LD S++VSD ++ ++ L FL+ Y
Sbjct: 65 TLDPYTPDYQDQLKSPGVTLRPDVYGEKGLDISYNVSDNRTWVDLVNILHNFLEGYSPTS 124
Query: 513 QKNLTDCTDGKFLEQK---GPHYD--ACRFPLNLLEACSGEIDPQFGYSRGNPCILVKMN 677
Q++ +CT K+ Q P++ +C+F ++L+ CSG DP FG++ G PC ++KMN
Sbjct: 125 QEDNINCTSEKYFFQDVFGAPNHTKFSCKFMADMLQNCSGLTDPNFGFAEGKPCFIIKMN 184
Query: 678 RIIGLKPQGE--PRIECI----SKGESTAVLSTYPPNGKIDIKYFPYYGKKLHGNYLQPL 839
RI+ P PR +C K + + YPPNG ++YFPYYGKK +Y PL
Sbjct: 185 RIVNFLPSNSTAPRADCTFLDQHKDDRPLQVEYYPPNGTFSLRYFPYYGKKAQPHYSNPL 244
Query: 840 VAVQLTFDAGNDMNEVTVECKIDGSPNLKNQDDRDKFLGRVAFKVTV 980
VA +L N EV + CKI + + + D + G+V FK+T+
Sbjct: 245 VAAKLLNVPRN--TEVLIVCKI-LADYVTFDNPHDPYEGKVEFKLTI 288
>ref|XP_538158.2| PREDICTED: similar to ATPase, (Na+)/K+ transporting, beta 4
polypeptide [Canis familiaris].
Length = 362
Score = 155 bits (393), Expect = 4e-38
Identities = 97/293 (33%), Positives = 163/293 (55%), Gaps = 18/293 (6%)
Frame = +3
Query: 156 KKEKKSFNQSMA-----EWKL---FLYNPTTGEFLGRSAKSWGLIXXXXXXXXXXXXXXX 311
K+E+K Q +W++ +L++P L R+ GLI
Sbjct: 77 KEEEKGQGQPTGNAWWQKWQIVNEYLWDPEKRMSLART----GLILVIYFFFYASLAAVI 132
Query: 312 XXTMWVMLQTLNDEVPKYRDQISSPGLMVFPKPVSALDYSFSVSDPDSYKGYIDDLKKFL 491
M+ + T++ +P + +++ PG+M+ P S L+++F+VS+PD+++ Y+ L FL
Sbjct: 133 TLCMYTLFLTISPYMPPFTERVKPPGVMIRPFAHS-LNFNFNVSEPDTWQHYVISLNGFL 191
Query: 492 KPYD--LEEQKNLTDCTDGKFLEQKGPHYD---ACRFPLNLLEACSGEIDPQFGYSRGNP 656
+ Y+ L+E+ N+ DC G++ Q G + AC+F + L+ CSG DP FGYS G P
Sbjct: 192 QGYNDSLQEEMNV-DCPPGQYFIQDGDEDEDKKACQFKRSFLKNCSGLEDPTFGYSTGQP 250
Query: 657 CILVKMNRIIGLKPQ-GEP-RIEC-ISKGESTAV--LSTYPPNGKIDIKYFPYYGKKLHG 821
CIL+KMNRI+G +P+ G+P ++ C + +G+ + ++ YP + D++Y+PYYGK H
Sbjct: 251 CILLKMNRIVGFRPELGDPVKVSCKVQRGDENDIRSINYYPESASFDLRYYPYYGKLTHV 310
Query: 822 NYLQPLVAVQLTFDAGNDMNEVTVECKIDGSPNLKNQDDRDKFLGRVAFKVTV 980
NY PLVA+ T N V V+C++ G + N D+F+GRV F + +
Sbjct: 311 NYTSPLVAMHFTDVVKN--QAVPVQCQLKGK-GIINDVINDRFVGRVIFTLNI 360
>ref|NP_001003283.1| sodium/potassium-transporting ATPase subunit beta-1 [Canis lupus
familiaris].
Length = 303
Score = 141 bits (356), Expect = 8e-34
Identities = 97/302 (32%), Positives = 144/302 (47%), Gaps = 40/302 (13%)
Frame = +3
Query: 195 WKLFLYNPTTGEFLGRSAKSWGLIXXXXXXXXXXXXXXXXXTMWVMLQTLNDEVPKYRDQ 374
WK F++N EFLGR+ SW I T+ VML T+++ P Y+D+
Sbjct: 12 WKKFIWNSEKKEFLGRTGGSWFKILLFYVIFYGCLAGIFIGTIQVMLLTISEFKPTYQDR 71
Query: 375 ISSPGLMVFPKPVSALDYSFSVSDPDSYKGYIDDLKKFLKPYDLEEQKN---LTDCTD-- 539
++ PGL P+ + + SF +DP SY+ Y+ ++ +FL+ Y QK+ DC +
Sbjct: 72 VAPPGLTQIPQ-IQKTEISFRPNDPKSYEEYVRNIVRFLEKYKDSAQKDEMIFEDCGNMP 130
Query: 540 ------GKFLEQKGPHYDACRFPLNLLEACSGEIDPQFGYSRGNPCILVKMNRIIGLKPQ 701
G+F ++G CRF L L CSG D +GY G PC+L+K+NR++G KP+
Sbjct: 131 SEIKERGEFNNERGER-KVCRFKLEWLGNCSGINDETYGYRDGKPCVLIKLNRVLGFKPK 189
Query: 702 GEPR-----------------IECISKGESTA---------VLSTYPPNGKIDIKYFPYY 803
++C K + L YP ++Y+PYY
Sbjct: 190 PPKNESLEAYPVMKYSPYVLPVQCTGKRDEDKDRIGNVEYFGLGGYP---GFPLQYYPYY 246
Query: 804 GKKLHGNYLQPLVAVQ---LTFDAGNDMNEVTVECKIDGSPNLKNQDDRDKFLGRVAFKV 974
GK L YLQPL+AVQ LT D E+ +ECK G N+ ++D+F GR K+
Sbjct: 247 GKLLQPKYLQPLLAVQFTNLTMD-----TEIRIECKAYGE-NI-GYSEKDRFQGRFDVKI 299
Query: 975 TV 980
V
Sbjct: 300 EV 301
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 37,105,448
Number of extensions: 946771
Number of successful extensions: 2451
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 2434
Number of HSP's successfully gapped: 5
Length of query: 333
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 230
Effective length of database: 15,440,896
Effective search space: 3551406080
Effective search space used: 3551406080
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002848
(1001 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001670.1| sodium/potassium-transporting ATPase subunit be... 419 e-117
Alignment gi|NP_001669.3| sodium/potassium-transporting ATPase subunit be... 207 1e-53
Alignment gi|NP_001135919.1| protein ATP1B4 isoform A [Homo sapiens]. 169 5e-42
Alignment gi|NP_036201.1| protein ATP1B4 isoform B [Homo sapiens]. 159 4e-39
Alignment gi|NP_000696.1| potassium-transporting ATPase subunit beta [Hom... 155 5e-38
Alignment gi|NP_001668.1| sodium/potassium-transporting ATPase subunit be... 144 1e-34
>ref|NP_001670.1| sodium/potassium-transporting ATPase subunit beta-3 [Homo sapiens].
Length = 279
Score = 419 bits (1076), Expect = e-117
Identities = 202/279 (72%), Positives = 224/279 (80%)
Frame = +3
Query: 150 MTKKEKKSFNQSMAEWKLFLYNPTTGEFLGRSAKSWGLIXXXXXXXXXXXXXXXXXTMWV 329
MTK EKKS NQS+AEWKLF+YNPTTGEFLGR+AKSWGLI TMWV
Sbjct: 1 MTKNEKKSLNQSLAEWKLFIYNPTTGEFLGRTAKSWGLILLFYLVFYGFLAALFSFTMWV 60
Query: 330 MLQTLNDEVPKYRDQISSPGLMVFPKPVSALDYSFSVSDPDSYKGYIDDLKKFLKPYDLE 509
MLQTLNDEVPKYRDQI SPGLMVFPKPV+AL+Y+FS SDP SY GYI+DLKKFLKPY LE
Sbjct: 61 MLQTLNDEVPKYRDQIPSPGLMVFPKPVTALEYTFSRSDPTSYAGYIEDLKKFLKPYTLE 120
Query: 510 EQKNLTDCTDGKFLEQKGPHYDACRFPLNLLEACSGEIDPQFGYSRGNPCILVKMNRIIG 689
EQKNLT C DG EQKGP Y AC+FP++LL+ACSG DP FGYS+GNPCILVKMNRIIG
Sbjct: 121 EQKNLTVCPDGALFEQKGPVYVACQFPISLLQACSGMNDPDFGYSQGNPCILVKMNRIIG 180
Query: 690 LKPQGEPRIECISKGESTAVLSTYPPNGKIDIKYFPYYGKKLHGNYLQPLVAVQLTFDAG 869
LKP+G PRI+C+SK E ++ YP NG ID+KYFPYYGKKLH YLQPLVAVQ++F
Sbjct: 181 LKPEGVPRIDCVSKNEDIPNVAVYPHNGMIDLKYFPYYGKKLHVGYLQPLVAVQVSFAPN 240
Query: 870 NDMNEVTVECKIDGSPNLKNQDDRDKFLGRVAFKVTVHA 986
N EVTVECKIDGS NLK+QDDRDKFLGRV FK+T A
Sbjct: 241 NTGKEVTVECKIDGSANLKSQDDRDKFLGRVMFKITARA 279
>ref|NP_001669.3| sodium/potassium-transporting ATPase subunit beta-2 [Homo sapiens].
Length = 290
Score = 207 bits (527), Expect = 1e-53
Identities = 121/290 (41%), Positives = 167/290 (57%), Gaps = 14/290 (4%)
Frame = +3
Query: 156 KKEKKSFNQSMAEWKLFLYNPTTGEFLGRSAKSWGLIXXXXXXXXXXXXXXXXXTMWVML 335
+KEKKS Q + EWK F++NP T +F+GR+ SW I TMWVML
Sbjct: 4 QKEKKSCGQVVEEWKEFVWNPRTHQFMGRTGTSWAFILLFYLVFYGFLTAMFTLTMWVML 63
Query: 336 QTLNDEVPKYRDQISSPGLMVFPKPVSALDYSFSVSDPDSYKGYIDDLKKFLKPYD--LE 509
QT++D PKY+D++++PGLM+ PK + LD +VSD +S+ ++ L KFL+PY+ ++
Sbjct: 64 QTVSDHTPKYQDRLATPGLMIRPKTEN-LDVIVNVSDTESWDQHVQKLNKFLEPYNDSIQ 122
Query: 510 EQKNLTDCTDGKFLEQKGP---HYD--ACRFPLNLLEACSGEIDP-QFGYSRGNPCILVK 671
QKN C G++ EQ +Y AC+F L CSG D +GYS G PC+ +K
Sbjct: 123 AQKNDV-CRPGRYYEQPDNGVLNYPKRACQFNRTQLGNCSGIGDSTHYGYSTGQPCVFIK 181
Query: 672 MNRIIGLKPQGEP--RIECISK----GESTAVLSTYPPNGKIDIKYFPYYGKKLHGNYLQ 833
MNR+I + C K E+ +P NG ID+ YFPYYGKK H NY Q
Sbjct: 182 MNRVINFYAGANQSMNVTCAGKRDEDAENLGNFVMFPANGNIDLMYFPYYGKKFHVNYTQ 241
Query: 834 PLVAVQLTFDAGNDMNEVTVECKIDGSPNLKNQDDRDKFLGRVAFKVTVH 983
PLVAV+ N EV VEC+I+ + N+ D+RDKF GRVAFK+ ++
Sbjct: 242 PLVAVKFLNVTPN--VEVNVECRINAA-NIATDDERDKFAGRVAFKLRIN 288
>ref|NP_001135919.1| protein ATP1B4 isoform A [Homo sapiens].
Length = 357
Score = 169 bits (427), Expect = 5e-42
Identities = 95/269 (35%), Positives = 156/269 (57%), Gaps = 10/269 (3%)
Frame = +3
Query: 204 FLYNPTTGEFLGRSAKSWGLIXXXXXXXXXXXXXXXXXTMWVMLQTLNDEVPKYRDQISS 383
+L++P FL R+ +SW LI M+ + T++ +P + +++
Sbjct: 92 YLWDPERRMFLARTGQSWSLILLIYFFFYASLAAVITLCMYTLFLTISPYIPTFTERVKP 151
Query: 384 PGLMVFPKPVSALDYSFSVSDPDSYKGYIDDLKKFLKPYD--LEEQKNLTDCTDGKFLEQ 557
PG+M+ P S L+++F+VS+PD+++ Y+ L FL+ Y+ L+E+ N+ DC G++ Q
Sbjct: 152 PGVMIRPFAHS-LNFNFNVSEPDTWQHYVISLNGFLQGYNDSLQEEMNV-DCPPGQYFIQ 209
Query: 558 KGPHYD---ACRFPLNLLEACSGEIDPQFGYSRGNPCILVKMNRIIGLKPQ-GEP-RIEC 722
G + AC+F + L+ CSG DP FGYS G PCIL+KMNRI+G +P+ G+P ++ C
Sbjct: 210 DGNEDEDKKACQFKRSFLKNCSGLEDPTFGYSTGQPCILLKMNRIVGFRPELGDPVKVSC 269
Query: 723 -ISKGESTAV--LSTYPPNGKIDIKYFPYYGKKLHGNYLQPLVAVQLTFDAGNDMNEVTV 893
+ +G+ + +S YP + D++Y+PYYGK H NY PLVA+ T N V V
Sbjct: 270 KVQRGDENDIRSISYYPESASFDLRYYPYYGKLTHVNYTSPLVAMHFTDVVKN--QAVPV 327
Query: 894 ECKIDGSPNLKNQDDRDKFLGRVAFKVTV 980
+C++ G + N D+F+GRV F + +
Sbjct: 328 QCQLKGK-GVINDVINDRFVGRVIFTLNI 355
>ref|NP_036201.1| protein ATP1B4 isoform B [Homo sapiens].
Length = 353
Score = 159 bits (402), Expect = 4e-39
Identities = 94/269 (34%), Positives = 154/269 (57%), Gaps = 10/269 (3%)
Frame = +3
Query: 204 FLYNPTTGEFLGRSAKSWGLIXXXXXXXXXXXXXXXXXTMWVMLQTLNDEVPKYRDQISS 383
+L++P FL R+ GLI M+ + T++ +P + +++
Sbjct: 92 YLWDPERRMFLART----GLILLIYFFFYASLAAVITLCMYTLFLTISPYIPTFTERVKP 147
Query: 384 PGLMVFPKPVSALDYSFSVSDPDSYKGYIDDLKKFLKPYD--LEEQKNLTDCTDGKFLEQ 557
PG+M+ P S L+++F+VS+PD+++ Y+ L FL+ Y+ L+E+ N+ DC G++ Q
Sbjct: 148 PGVMIRPFAHS-LNFNFNVSEPDTWQHYVISLNGFLQGYNDSLQEEMNV-DCPPGQYFIQ 205
Query: 558 KGPHYD---ACRFPLNLLEACSGEIDPQFGYSRGNPCILVKMNRIIGLKPQ-GEP-RIEC 722
G + AC+F + L+ CSG DP FGYS G PCIL+KMNRI+G +P+ G+P ++ C
Sbjct: 206 DGNEDEDKKACQFKRSFLKNCSGLEDPTFGYSTGQPCILLKMNRIVGFRPELGDPVKVSC 265
Query: 723 -ISKGESTAV--LSTYPPNGKIDIKYFPYYGKKLHGNYLQPLVAVQLTFDAGNDMNEVTV 893
+ +G+ + +S YP + D++Y+PYYGK H NY PLVA+ T N V V
Sbjct: 266 KVQRGDENDIRSISYYPESASFDLRYYPYYGKLTHVNYTSPLVAMHFTDVVKN--QAVPV 323
Query: 894 ECKIDGSPNLKNQDDRDKFLGRVAFKVTV 980
+C++ G + N D+F+GRV F + +
Sbjct: 324 QCQLKGK-GVINDVINDRFVGRVIFTLNI 351
>ref|NP_000696.1| potassium-transporting ATPase subunit beta [Homo sapiens].
Length = 291
Score = 155 bits (392), Expect = 5e-38
Identities = 90/288 (31%), Positives = 148/288 (51%), Gaps = 14/288 (4%)
Frame = +3
Query: 159 KEKKSFNQSMAEWKLFLYNPTTGEFLGRSAKSWGLIXXXXXXXXXXXXXXXXXTMWVMLQ 338
+EKK+ Q M E++ + +NP TG+ LGR+ W I ++V++Q
Sbjct: 5 QEKKTCGQRMEEFQRYCWNPDTGQMLGRTLSRWVWISLYYVAFYVVMTGLFALCLYVLMQ 64
Query: 339 TLNDEVPKYRDQISSPGLMVFPKPVS--ALDYSFSVSDPDSYKGYIDDLKKFLKPYDLEE 512
T++ P Y+DQ+ SPG+ + P L+ ++VSD ++ L FL Y
Sbjct: 65 TVDPYTPDYQDQLRSPGVTLRPDVYGEKGLEIVYNVSDNRTWADLTQTLHAFLAGYSPAA 124
Query: 513 QKNLTDCTDGKFLEQ---KGPHYD--ACRFPLNLLEACSGEIDPQFGYSRGNPCILVKMN 677
Q++ +CT ++ Q + P++ +C+F ++L+ CSG DP FG+ G PC ++KMN
Sbjct: 125 QEDSINCTSEQYFFQESFRAPNHTKFSCKFTADMLQNCSGLADPNFGFEEGKPCFIIKMN 184
Query: 678 RIIGLKPQ--GEPRIECISKGESTAV-----LSTYPPNGKIDIKYFPYYGKKLHGNYLQP 836
RI+ P PR++C + + + YPPNG + YFPYYGKK +Y P
Sbjct: 185 RIVKFLPSNGSAPRVDCAFLDQPRELGQPLQVKYYPPNGTFSLHYFPYYGKKAQPHYSNP 244
Query: 837 LVAVQLTFDAGNDMNEVTVECKIDGSPNLKNQDDRDKFLGRVAFKVTV 980
LVA +L N EV + CK+ + ++ + D + G+V FK+ +
Sbjct: 245 LVAAKLLNIPRN--AEVAIVCKV-MAEHVTFNNPHDPYEGKVEFKLKI 289
>ref|NP_001668.1| sodium/potassium-transporting ATPase subunit beta-1 [Homo sapiens].
Length = 303
Score = 144 bits (364), Expect = 1e-34
Identities = 101/304 (33%), Positives = 147/304 (48%), Gaps = 42/304 (13%)
Frame = +3
Query: 195 WKLFLYNPTTGEFLGRSAKSWGLIXXXXXXXXXXXXXXXXXTMWVMLQTLNDEVPKYRDQ 374
WK F++N EFLGR+ SW I T+ VML T+++ P Y+D+
Sbjct: 12 WKKFIWNSEKKEFLGRTGGSWFKILLFYVIFYGCLAGIFIGTIQVMLLTISEFKPTYQDR 71
Query: 375 ISSPGLMVFPKPVSALDYSFSVSDPDSYKGYIDDLKKFLKPYDLEEQKN---LTDCTD-- 539
++ PGL P+ + + SF +DP SY+ Y+ ++ +FL+ Y Q++ DC D
Sbjct: 72 VAPPGLTQIPQ-IQKTEISFRPNDPKSYEAYVLNIVRFLEKYKDSAQRDDMIFEDCGDVP 130
Query: 540 ------GKFLEQKGPHYDACRFPLNLLEACSGEIDPQFGYSRGNPCILVKMNRIIGLKPQ 701
G F ++G CRF L L CSG D +GY G PCI++K+NR++G KP+
Sbjct: 131 SEPKERGDFNHERGER-KVCRFKLEWLGNCSGLNDETYGYKEGKPCIIIKLNRVLGFKPK 189
Query: 702 GEPRIECISKGESTAVLSTYPPN-------GKID---------------------IKYFP 797
P+ E + T + Y PN GK D ++Y+P
Sbjct: 190 -PPKNESL----ETYPVMKYNPNVLPVQCTGKRDEDKDKVGNVEYFGLGNSPGFPLQYYP 244
Query: 798 YYGKKLHGNYLQPLVAVQ---LTFDAGNDMNEVTVECKIDGSPNLKNQDDRDKFLGRVAF 968
YYGK L YLQPL+AVQ LT D E+ +ECK G N+ ++D+F GR
Sbjct: 245 YYGKLLQPKYLQPLLAVQFTNLTMD-----TEIRIECKAYGE-NI-GYSEKDRFQGRFDV 297
Query: 969 KVTV 980
K+ V
Sbjct: 298 KIEV 301
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 36,581,561
Number of extensions: 941426
Number of successful extensions: 2313
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 2296
Number of HSP's successfully gapped: 6
Length of query: 333
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 230
Effective length of database: 14,901,872
Effective search space: 3427430560
Effective search space used: 3427430560
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002848
(1001 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_031528.1| sodium/potassium-transporting ATPase subunit be... 367 e-102
Alignment gi|NP_038201.1| sodium/potassium-transporting ATPase subunit be... 211 7e-55
Alignment gi|NP_033854.1| potassium-transporting ATPase subunit beta [Mus... 166 3e-41
Alignment gi|NP_598451.1| protein ATP1B4 [Mus musculus]. 157 9e-39
Alignment gi|NP_033851.1| sodium/potassium-transporting ATPase subunit be... 143 2e-34
>ref|NP_031528.1| sodium/potassium-transporting ATPase subunit beta-3 [Mus musculus].
Length = 278
Score = 367 bits (942), Expect = e-102
Identities = 177/279 (63%), Positives = 212/279 (75%)
Frame = +3
Query: 150 MTKKEKKSFNQSMAEWKLFLYNPTTGEFLGRSAKSWGLIXXXXXXXXXXXXXXXXXTMWV 329
MTK EKKSF+QS+AEWKLF+YNP++GEFLGR++KSWGLI TMW
Sbjct: 1 MTKTEKKSFHQSLAEWKLFIYNPSSGEFLGRTSKSWGLILLFYLVFYGFLAALFTFTMWA 60
Query: 330 MLQTLNDEVPKYRDQISSPGLMVFPKPVSALDYSFSVSDPDSYKGYIDDLKKFLKPYDLE 509
MLQTLNDEVPKYRDQI SPGLMVFPKP +AL+Y+FS+S+P +YK ++DL+ FLKPY +E
Sbjct: 61 MLQTLNDEVPKYRDQIPSPGLMVFPKPQTALEYTFSMSEPQTYKKLVEDLESFLKPYSVE 120
Query: 510 EQKNLTDCTDGKFLEQKGPHYDACRFPLNLLEACSGEIDPQFGYSRGNPCILVKMNRIIG 689
EQKNLT C DG Q GP Y AC+FP++LLE CSG D FGYS+G PCILVKMNRII
Sbjct: 121 EQKNLTSCPDGAPFIQHGPDYRACQFPVSLLEECSGVTDANFGYSKGQPCILVKMNRIID 180
Query: 690 LKPQGEPRIECISKGESTAVLSTYPPNGKIDIKYFPYYGKKLHGNYLQPLVAVQLTFDAG 869
L P G P+I C+ K E A ++TYP G +D+KYFPYYGKK H Y QPLVAVQ+ FD+G
Sbjct: 181 LIPDGYPQISCLPK-EENATIATYPEFGVLDLKYFPYYGKKRHVGYRQPLVAVQVKFDSG 239
Query: 870 NDMNEVTVECKIDGSPNLKNQDDRDKFLGRVAFKVTVHA 986
+ EVTVEC I G+ NLKN+++RDKFLGRV+FKVT A
Sbjct: 240 LNKKEVTVECHIAGTRNLKNKNERDKFLGRVSFKVTARA 278
>ref|NP_038201.1| sodium/potassium-transporting ATPase subunit beta-2 [Mus musculus].
Length = 290
Score = 211 bits (537), Expect = 7e-55
Identities = 121/290 (41%), Positives = 169/290 (58%), Gaps = 14/290 (4%)
Frame = +3
Query: 156 KKEKKSFNQSMAEWKLFLYNPTTGEFLGRSAKSWGLIXXXXXXXXXXXXXXXXXTMWVML 335
+KEKKS Q + EWK F++NP T +F+GR+ SW I TMWVML
Sbjct: 4 QKEKKSCGQVVEEWKEFVWNPRTHQFMGRTGTSWAFILLFYLVFYGFLTAMFSLTMWVML 63
Query: 336 QTLNDEVPKYRDQISSPGLMVFPKPVSALDYSFSVSDPDSYKGYIDDLKKFLKPYD--LE 509
QT++D PKY+D++++PGLM+ PK + LD ++SD +S+ ++ L KFL+PY+ ++
Sbjct: 64 QTVSDHTPKYQDRLATPGLMIRPKTEN-LDVIVNISDTESWGQHVQKLNKFLEPYNDSIQ 122
Query: 510 EQKNLTDCTDGKFLEQKGP---HYD--ACRFPLNLLEACSGEIDP-QFGYSRGNPCILVK 671
QKN C G++ EQ +Y AC+F L CSG DP +GYS G PC+ +K
Sbjct: 123 AQKNDV-CRPGRYYEQPDNGVLNYPKRACQFNRTQLGDCSGIGDPTHYGYSTGQPCVFIK 181
Query: 672 MNRIIGLKPQGEP--RIECISK----GESTAVLSTYPPNGKIDIKYFPYYGKKLHGNYLQ 833
MNR+I + C+ K E+ +P NG ID+ YFPYYGKK H NY Q
Sbjct: 182 MNRVINFYAGANQSMNVTCVGKRDEDAENLGHFVMFPANGSIDLMYFPYYGKKFHVNYTQ 241
Query: 834 PLVAVQLTFDAGNDMNEVTVECKIDGSPNLKNQDDRDKFLGRVAFKVTVH 983
PLVAV+ N EV VEC+I+ + N+ D+RDKF GRVAFK+ ++
Sbjct: 242 PLVAVKFLNVTPN--VEVNVECRINAA-NIATDDERDKFAGRVAFKLRIN 288
>ref|NP_033854.1| potassium-transporting ATPase subunit beta [Mus musculus].
Length = 294
Score = 166 bits (420), Expect = 3e-41
Identities = 97/291 (33%), Positives = 152/291 (52%), Gaps = 17/291 (5%)
Frame = +3
Query: 159 KEKKSFNQSMAEWKLFLYNPTTGEFLGRSAKSWGLIXXXXXXXXXXXXXXXXXTMWVMLQ 338
+EKKS +Q MAE++ + +NP TG+ LGR+ W I ++V++Q
Sbjct: 5 QEKKSCSQRMAEFRHYCWNPDTGQMLGRTPARWVWISLYYAGFYVVMTGLFALCIYVLMQ 64
Query: 339 TLNDEVPKYRDQISSPGLMVFPKPVS--ALDYSFSVSDPDSYKGYIDDLKKFLKPYDLEE 512
T++ P Y+DQ+ SPG+ + P L S++VS+ S+ G L FL Y
Sbjct: 65 TIDPYTPDYQDQLKSPGVTLRPDVYGERGLKISYNVSENSSWAGLTHTLHSFLAGYTPAS 124
Query: 513 QKNLTDCTDGKFLEQKG---PHYD--ACRFPLNLLEACSGEIDPQFGYSRGNPCILVKMN 677
Q++ +CT K+ Q+ P++ +C+F ++L+ CSG DP FG+ G PC ++KMN
Sbjct: 125 QQDSINCTSEKYFFQESFAAPNHTKFSCKFTADMLQNCSGLADPSFGFEEGKPCFIIKMN 184
Query: 678 RIIGLKPQGE--PRIECI--------SKGESTAVLSTYPPNGKIDIKYFPYYGKKLHGNY 827
RI+ P PR++C K + YPPNG + YFPYYGKK +Y
Sbjct: 185 RIVKFLPSNNTAPRVDCTFQDDPQKPRKDTEPLQVEYYPPNGTFSLHYFPYYGKKAQPHY 244
Query: 828 LQPLVAVQLTFDAGNDMNEVTVECKIDGSPNLKNQDDRDKFLGRVAFKVTV 980
PLVA +L N +V++ CKI + ++ + D + G+V FK+T+
Sbjct: 245 SNPLVAAKLLNVPKN--MQVSIVCKI-LADHVTFNNPHDPYEGKVEFKLTI 292
>ref|NP_598451.1| protein ATP1B4 [Mus musculus].
Length = 356
Score = 157 bits (398), Expect = 9e-39
Identities = 90/269 (33%), Positives = 154/269 (57%), Gaps = 10/269 (3%)
Frame = +3
Query: 204 FLYNPTTGEFLGRSAKSWGLIXXXXXXXXXXXXXXXXXTMWVMLQTLNDEVPKYRDQISS 383
+L++P L R+ +S LI ++++ ++ +P + +Q+
Sbjct: 91 YLWDPEKRMSLARTGQSRSLILVIYFFFYASLAAVITLFIYMLFLAISPYMPTFTEQVKP 150
Query: 384 PGLMVFPKPVSALDYSFSVSDPDSYKGYIDDLKKFLKPYD--LEEQKNLTDCTDGKFLEQ 557
PG+M+ P S L+++F+VS+P++++ Y+ L FL+ Y+ L+E+ N+ DC G++ Q
Sbjct: 151 PGVMIRPFAHS-LNFNFNVSEPETWQRYVISLNGFLQGYNDSLQEEMNI-DCPPGRYFIQ 208
Query: 558 KGPHYD---ACRFPLNLLEACSGEIDPQFGYSRGNPCILVKMNRIIGLKPQ-GEP-RIEC 722
G + AC+F + L+ CSG DP FGYS G PCIL+KMNRI+G +P+ G+P ++ C
Sbjct: 209 DGDEDEDKKACQFKRSFLKNCSGLEDPTFGYSTGQPCILLKMNRIVGFRPEFGDPVKVSC 268
Query: 723 -ISKGESTAV--LSTYPPNGKIDIKYFPYYGKKLHGNYLQPLVAVQLTFDAGNDMNEVTV 893
+ KG+ + ++ YP + D++Y+PYYGK H NY PLVA+ T N V V
Sbjct: 269 KVQKGDENDIRSINYYPESASFDLRYYPYYGKLTHVNYTSPLVAMHFTDVVKN--QAVPV 326
Query: 894 ECKIDGSPNLKNQDDRDKFLGRVAFKVTV 980
+C++ G + N D+F+GR+ F + +
Sbjct: 327 QCQLKGK-GIVNDVINDRFVGRIIFTLNI 354
>ref|NP_033851.1| sodium/potassium-transporting ATPase subunit beta-1 [Mus musculus].
Length = 304
Score = 143 bits (360), Expect = 2e-34
Identities = 100/304 (32%), Positives = 149/304 (49%), Gaps = 42/304 (13%)
Frame = +3
Query: 195 WKLFLYNPTTGEFLGRSAKSWGLIXXXXXXXXXXXXXXXXXTMWVMLQTLNDEVPKYRDQ 374
WK F++N EFLGR+ SW I T+ VML T+++ P Y+D+
Sbjct: 12 WKKFIWNSEKKEFLGRTGGSWFKILLFYVIFYGCLAGIFIGTIQVMLLTISELKPTYQDR 71
Query: 375 ISSPGLMVFPKPVSALDYSFSVSDPDSYKGYIDDLKKFLKPYDLEEQKN---LTDCTD-- 539
++ PGL P+ + + SF +DP SY+ Y+ ++ +FL+ Y QK+ DC +
Sbjct: 72 VAPPGLTQIPQ-IQKTEISFRPNDPKSYEAYVLNIIRFLEKYKDSAQKDDMIFEDCGNVP 130
Query: 540 ------GKFLEQKGPHYDACRFPLNLLEACSGEIDPQFGYSRGNPCILVKMNRIIGLKPQ 701
G ++G CRF L+ L CSG D +GY G PCI++K+NR++G KP+
Sbjct: 131 SEPKERGDINHERGER-KVCRFKLDWLGNCSGLNDDSYGYREGKPCIIIKLNRVLGFKPK 189
Query: 702 GEPRIECISKGESTAVLSTYPPN-------GKID---------------------IKYFP 797
P+ E + E+ ++ Y PN GK D ++Y+P
Sbjct: 190 -PPKNESL---ETYPLMMKYNPNVLPVQCTGKRDEDKDKVGNIEYFGMGGYYGFPLQYYP 245
Query: 798 YYGKKLHGNYLQPLVAVQ---LTFDAGNDMNEVTVECKIDGSPNLKNQDDRDKFLGRVAF 968
YYGK L YLQPL+AVQ LT D E+ VECK G N+ ++D+F GR
Sbjct: 246 YYGKLLQPKYLQPLLAVQFTNLTVD-----TEIRVECKAYGE-NI-GYSEKDRFQGRFDV 298
Query: 969 KVTV 980
K+ +
Sbjct: 299 KIEI 302
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 31,305,037
Number of extensions: 803364
Number of successful extensions: 2106
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 2091
Number of HSP's successfully gapped: 5
Length of query: 333
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 231
Effective length of database: 12,553,887
Effective search space: 2899947897
Effective search space used: 2899947897
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002848
(1001 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003132498.2| PREDICTED: sodium/potassium-transporting ATP... 471 e-133
Alignment gi|XP_003131993.1| PREDICTED: sodium/potassium-transporting ATP... 209 2e-54
Alignment gi|NP_999297.1| protein ATP1B4 [Sus scrofa]. 162 4e-40
Alignment gi|XP_003357955.1| PREDICTED: potassium-transporting ATPase sub... 159 2e-39
Alignment gi|NP_001001258.1| potassium-transporting ATPase subunit beta [... 159 2e-39
Alignment gi|XP_003361553.1| PREDICTED: sodium/potassium-transporting ATP... 139 2e-33
Alignment gi|NP_001001542.1| sodium/potassium-transporting ATPase subunit... 131 5e-31
>ref|XP_003132498.2| PREDICTED: sodium/potassium-transporting ATPase subunit beta-3-like
[Sus scrofa].
Length = 255
Score = 471 bits (1212), Expect = e-133
Identities = 229/249 (91%), Positives = 231/249 (92%)
Frame = +3
Query: 240 RSAKSWGLIXXXXXXXXXXXXXXXXXTMWVMLQTLNDEVPKYRDQISSPGLMVFPKPVSA 419
RS+K+ GLI TMWVMLQTLNDEVPKYRDQISSPGLMVFPKPVSA
Sbjct: 7 RSSKNCGLILLFYLVFYVFLAALFAFTMWVMLQTLNDEVPKYRDQISSPGLMVFPKPVSA 66
Query: 420 LDYSFSVSDPDSYKGYIDDLKKFLKPYDLEEQKNLTDCTDGKFLEQKGPHYDACRFPLNL 599
LDYSFSVSDPDSYKGYIDDLKKFLKPYDLEEQKNLTDCTDGKFLEQKGPHYDACRFPLNL
Sbjct: 67 LDYSFSVSDPDSYKGYIDDLKKFLKPYDLEEQKNLTDCTDGKFLEQKGPHYDACRFPLNL 126
Query: 600 LEACSGEIDPQFGYSRGNPCILVKMNRIIGLKPQGEPRIECISKGESTAVLSTYPPNGKI 779
LEACSGEIDPQFGYSRGNPCILVKMNRIIGLKPQGEPRIECISKGESTAVLSTYPPNGKI
Sbjct: 127 LEACSGEIDPQFGYSRGNPCILVKMNRIIGLKPQGEPRIECISKGESTAVLSTYPPNGKI 186
Query: 780 DIKYFPYYGKKLHGNYLQPLVAVQLTFDAGNDMNEVTVECKIDGSPNLKNQDDRDKFLGR 959
DIKYFPYYGKKLHGNYLQPLVAVQLTFDAGNDMNEVTVECKIDGSPNLKNQDDRDKFLGR
Sbjct: 187 DIKYFPYYGKKLHGNYLQPLVAVQLTFDAGNDMNEVTVECKIDGSPNLKNQDDRDKFLGR 246
Query: 960 VAFKVTVHA 986
VAFKVTVHA
Sbjct: 247 VAFKVTVHA 255
>ref|XP_003131993.1| PREDICTED: sodium/potassium-transporting ATPase subunit beta-2-like
[Sus scrofa].
Length = 290
Score = 209 bits (532), Expect = 2e-54
Identities = 121/290 (41%), Positives = 168/290 (57%), Gaps = 14/290 (4%)
Frame = +3
Query: 156 KKEKKSFNQSMAEWKLFLYNPTTGEFLGRSAKSWGLIXXXXXXXXXXXXXXXXXTMWVML 335
+KEKKS Q + EWK F++NP T +F+GR+ SW I TMWVML
Sbjct: 4 QKEKKSCGQVVEEWKEFVWNPRTHQFMGRTGTSWAFILLFYLVFYGFLTAMFTLTMWVML 63
Query: 336 QTLNDEVPKYRDQISSPGLMVFPKPVSALDYSFSVSDPDSYKGYIDDLKKFLKPYD--LE 509
QT++D PKY+D++++PGLM+ PK + LD +VSD +S+ ++ L KFL+PY+ ++
Sbjct: 64 QTVSDHTPKYQDRLATPGLMIRPKTEN-LDVIVNVSDTESWDQHVQKLNKFLEPYNDSIQ 122
Query: 510 EQKNLTDCTDGKFLEQKGP---HYD--ACRFPLNLLEACSGEIDP-QFGYSRGNPCILVK 671
QKN C G++ EQ +Y AC+F L CSG D +GYS G PC+ +K
Sbjct: 123 AQKNDV-CRPGRYYEQPDNGVLNYPKRACQFNRTQLGNCSGIGDSTHYGYSTGQPCVFIK 181
Query: 672 MNRIIGLKPQGEP--RIECISK----GESTAVLSTYPPNGKIDIKYFPYYGKKLHGNYLQ 833
MNR+I + C+ K E+ +P NG ID+ YFPYYGKK H NY Q
Sbjct: 182 MNRVINFYAGANQSMNVTCVGKRDEDAENLGSFVMFPANGNIDLMYFPYYGKKFHVNYTQ 241
Query: 834 PLVAVQLTFDAGNDMNEVTVECKIDGSPNLKNQDDRDKFLGRVAFKVTVH 983
PLVAV+ N EV VEC+I+ + N+ D+RDKF GRVAFK+ ++
Sbjct: 242 PLVAVKFLNVTPN--VEVNVECRINAA-NIATDDERDKFAGRVAFKLRIN 288
>ref|NP_999297.1| protein ATP1B4 [Sus scrofa].
Length = 355
Score = 162 bits (409), Expect = 4e-40
Identities = 99/293 (33%), Positives = 165/293 (56%), Gaps = 18/293 (6%)
Frame = +3
Query: 156 KKEKKSFNQSM--AEWKL------FLYNPTTGEFLGRSAKSWGLIXXXXXXXXXXXXXXX 311
K+E++S +Q A W+ +L++P L R+ +S L+
Sbjct: 66 KEEEESHHQDTRSAWWQKLQIVNEYLWDPEKRMSLARTGQSLSLLLVIYFFFYASLAAVI 125
Query: 312 XXTMWVMLQTLNDEVPKYRDQISSPGLMVFPKPVSALDYSFSVSDPDSYKGYIDDLKKFL 491
M+ + T++ VP + +++ PG+M+ P S L+++F+VS+PD+++ Y+ L FL
Sbjct: 126 TLCMYTLFLTISPYVPTFTERVKPPGVMIRPFAHS-LNFNFNVSEPDTWQHYVISLNGFL 184
Query: 492 KPYD--LEEQKNLTDCTDGKFLEQKGPHYD---ACRFPLNLLEACSGEIDPQFGYSRGNP 656
+ Y+ L+E+ N+ DC G++ Q G + AC+F + L+ CSG DP FGYS G P
Sbjct: 185 QGYNDSLQEEMNV-DCPPGQYFIQDGDEDEDKKACQFKRSFLKNCSGLEDPTFGYSTGQP 243
Query: 657 CILVKMNRIIGLKPQ-GEP-RIEC-ISKGESTAV--LSTYPPNGKIDIKYFPYYGKKLHG 821
CIL+KMNRI+G +P+ G+P ++ C + +G+ + +S YP + D++Y+PYYGK H
Sbjct: 244 CILLKMNRIVGFRPELGDPVKVSCKVQRGDENDIRSISYYPESASFDLRYYPYYGKLTHV 303
Query: 822 NYLQPLVAVQLTFDAGNDMNEVTVECKIDGSPNLKNQDDRDKFLGRVAFKVTV 980
NY PLVA+ T N V V+C++ G + N D+F+GRV F + +
Sbjct: 304 NYTSPLVAMHFTDVVKN--QAVPVQCQLKGK-GIINDVINDRFVGRVIFTLNI 353
>ref|XP_003357955.1| PREDICTED: potassium-transporting ATPase subunit beta-like [Sus
scrofa].
Length = 290
Score = 159 bits (402), Expect = 2e-39
Identities = 92/287 (32%), Positives = 150/287 (52%), Gaps = 13/287 (4%)
Frame = +3
Query: 159 KEKKSFNQSMAEWKLFLYNPTTGEFLGRSAKSWGLIXXXXXXXXXXXXXXXXXTMWVMLQ 338
+EKKS +Q M E++ + +NP TG+ LGR+ W I ++V+++
Sbjct: 5 QEKKSCSQRMEEFQRYCWNPDTGQMLGRTLSRWVWISLYYVAFYVVMSGIFALCIYVLMR 64
Query: 339 TLNDEVPKYRDQISSPGLMVFPKPVS--ALDYSFSVSDPDSYKGYIDDLKKFLKPYDLEE 512
T++ P Y+DQ+ SPG+ + P LD S++VSD ++ G L +FL Y
Sbjct: 65 TIDPYTPDYQDQLKSPGVTLRPDVYGEKGLDISYNVSDSTTWAGLAHTLHRFLAGYSPAA 124
Query: 513 QKNLTDCTDGKFLEQKG---PHYD--ACRFPLNLLEACSGEIDPQFGYSRGNPCILVKMN 677
Q+ +CT K+ Q+ P++ +C+F ++L+ CSG DP FG++ G PC ++KMN
Sbjct: 125 QEGSINCTSEKYFFQESFLAPNHTKFSCKFTADMLQNCSGRPDPTFGFAEGKPCFIIKMN 184
Query: 678 RIIGLKPQGE--PRIECI----SKGESTAVLSTYPPNGKIDIKYFPYYGKKLHGNYLQPL 839
RI+ P PR++C + + +P NG + YFPYYGKK +Y PL
Sbjct: 185 RIVKFLPGNSTAPRVDCAFLDQPRDGPPLQVEYFPANGTYSLHYFPYYGKKAQPHYSNPL 244
Query: 840 VAVQLTFDAGNDMNEVTVECKIDGSPNLKNQDDRDKFLGRVAFKVTV 980
VA +L N +V + CKI + ++ + D + G+V FK+ +
Sbjct: 245 VAAKLLNVPRN--RDVVIVCKI-LAEHVSFDNPHDPYEGKVEFKLKI 288
>ref|NP_001001258.1| potassium-transporting ATPase subunit beta [Sus scrofa].
Length = 290
Score = 159 bits (402), Expect = 2e-39
Identities = 92/287 (32%), Positives = 150/287 (52%), Gaps = 13/287 (4%)
Frame = +3
Query: 159 KEKKSFNQSMAEWKLFLYNPTTGEFLGRSAKSWGLIXXXXXXXXXXXXXXXXXTMWVMLQ 338
+EKKS +Q M E++ + +NP TG+ LGR+ W I ++V+++
Sbjct: 5 QEKKSCSQRMEEFQRYCWNPDTGQMLGRTLSRWVWISLYYVAFYVVMSGIFALCIYVLMR 64
Query: 339 TLNDEVPKYRDQISSPGLMVFPKPVS--ALDYSFSVSDPDSYKGYIDDLKKFLKPYDLEE 512
T++ P Y+DQ+ SPG+ + P LD S++VSD ++ G L +FL Y
Sbjct: 65 TIDPYTPDYQDQLKSPGVTLRPDVYGEKGLDISYNVSDSTTWAGLAHTLHRFLAGYSPAA 124
Query: 513 QKNLTDCTDGKFLEQKG---PHYD--ACRFPLNLLEACSGEIDPQFGYSRGNPCILVKMN 677
Q+ +CT K+ Q+ P++ +C+F ++L+ CSG DP FG++ G PC ++KMN
Sbjct: 125 QEGSINCTSEKYFFQESFLAPNHTKFSCKFTADMLQNCSGRPDPTFGFAEGKPCFIIKMN 184
Query: 678 RIIGLKPQGE--PRIECI----SKGESTAVLSTYPPNGKIDIKYFPYYGKKLHGNYLQPL 839
RI+ P PR++C + + +P NG + YFPYYGKK +Y PL
Sbjct: 185 RIVKFLPGNSTAPRVDCAFLDQPRDGPPLQVEYFPANGTYSLHYFPYYGKKAQPHYSNPL 244
Query: 840 VAVQLTFDAGNDMNEVTVECKIDGSPNLKNQDDRDKFLGRVAFKVTV 980
VA +L N +V + CKI + ++ + D + G+V FK+ +
Sbjct: 245 VAAKLLNVPRN--RDVVIVCKI-LAEHVSFDNPHDPYEGKVEFKLKI 288
>ref|XP_003361553.1| PREDICTED: sodium/potassium-transporting ATPase subunit beta-1-like
[Sus scrofa].
Length = 405
Score = 139 bits (351), Expect = 2e-33
Identities = 99/304 (32%), Positives = 149/304 (49%), Gaps = 42/304 (13%)
Frame = +3
Query: 195 WKLFLYNPTTGEFLGRSAKSWGLIXXXXXXXXXXXXXXXXXTMWVMLQTLNDEVPKYRDQ 374
WK F++N EFLGR+ SW I T+ VML T+++ P Y+D+
Sbjct: 113 WKKFIWNSEKKEFLGRTGGSWFKILLFYVIFYGCLAGIFIGTIQVMLLTISEFKPTYQDR 172
Query: 375 ISSPGLMVFPKPVSALDYSFSVSDPDSYKGYIDDLKKFLKPY-DLEEQKNLT--DCTD-- 539
++ PGL P+ + SF +DP SY+ Y+ + +FL+ Y DL ++ ++ DC +
Sbjct: 173 VAPPGLTQIPQSQKT-EISFRPNDPQSYESYVVSIVRFLEKYKDLAQKDDMIFEDCGNVP 231
Query: 540 ------GKFLEQKGPHYDACRFPLNLLEACSGEIDPQFGYSRGNPCILVKMNRIIGLKPQ 701
G++ ++G CRF L L CSG D +GY G PC+++K+NR++G KP+
Sbjct: 232 SELKERGEYNNERGER-KVCRFRLEWLGNCSGLNDETYGYKDGKPCVIIKLNRVLGFKPK 290
Query: 702 GEPRIECISKGESTAVLSTYPP-------NGKID---------------------IKYFP 797
P+ E + E T + Y P GK D ++Y+P
Sbjct: 291 -PPKNESL---EXTYPVMKYNPYVLPVHCTGKRDEDKEKVGTMEYFGLGGYPGFPLQYYP 346
Query: 798 YYGKKLHGNYLQPLVAVQ---LTFDAGNDMNEVTVECKIDGSPNLKNQDDRDKFLGRVAF 968
YYGK L YLQPL+AVQ LT D E+ +ECK G N+ ++D+F GR
Sbjct: 347 YYGKLLQPKYLQPLMAVQFTNLTMD-----TEIRIECKAYGE-NI-GYSEKDRFQGRFDV 399
Query: 969 KVTV 980
K+ V
Sbjct: 400 KIEV 403
>ref|NP_001001542.1| sodium/potassium-transporting ATPase subunit beta-1 [Sus scrofa].
Length = 303
Score = 131 bits (330), Expect = 5e-31
Identities = 92/299 (30%), Positives = 142/299 (47%), Gaps = 37/299 (12%)
Frame = +3
Query: 195 WKLFLYNPTTGEFLGRSAKSWGLIXXXXXXXXXXXXXXXXXTMWVMLQTLNDEVPKYRDQ 374
WK ++N EFLGR+ SW I T+ VML T+++ P Y+D+
Sbjct: 12 WKKLMWNSEKKEFLGRTGGSWFKILLFYVIFYGCLAGIFIGTIQVMLLTISEFKPTYQDR 71
Query: 375 ISSPGLMVFPKPVSALDYSFSVSDPDSYKGYIDDLKKFLKPY-DLEEQKNLT--DCTD-- 539
++ PGL P+ + SF +DP SY+ Y+ + +FL+ Y DL ++ ++ DC +
Sbjct: 72 VAPPGLTQIPQSQKT-EISFRPNDPQSYESYVVSIVRFLEKYKDLAQKDDMIFEDCGNVP 130
Query: 540 ------GKFLEQKGPHYDACRFPLNLLEACSGEIDPQFGYSRGNPCILVKMNRIIGLKPQ 701
G++ ++G CRF L L SG D +GY G PC+++K+NR++G KP+
Sbjct: 131 SELKERGEYNNERGER-KVCRFRLEWLGNSSGLNDETYGYKDGKPCVIIKLNRVLGFKPK 189
Query: 702 GEPR-----------------IECISK----GESTAVLSTYPPNG--KIDIKYFPYYGKK 812
+ C K E + + G ++Y+PYYGK
Sbjct: 190 PPKNESLETYPVMKYNPYVLPVHCTGKRDEDKEKVGTMEYFGLGGYPGFPLQYYPYYGKL 249
Query: 813 LHGNYLQPLVAVQ---LTFDAGNDMNEVTVECKIDGSPNLKNQDDRDKFLGRVAFKVTV 980
L YLQPL+AVQ LT D E+ +ECK G N+ ++D+F GR K+ V
Sbjct: 250 LQPKYLQPLMAVQFTNLTMD-----TEIRIECKAYGE-NI-GYSEKDRFQGRFDVKIEV 301
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 22,749,275
Number of extensions: 579688
Number of successful extensions: 1497
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 1472
Number of HSP's successfully gapped: 7
Length of query: 333
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 234
Effective length of database: 8,879,129
Effective search space: 2077716186
Effective search space used: 2077716186
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002848
(1001 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr09 1392 0.0
Sscrofa_Chr06 1156 0.0
Sscrofa_Chr13 367 8e-99
Sscrofa_Chr07 86 4e-14
>Sscrofa_Chr09
|| Length = 153670197
Score = 1392 bits (702), Expect = 0.0
Identities = 826/871 (94%), Gaps = 9/871 (1%)
Strand = Plus / Plus
Query: 123 ctgcttcccttgtcgtcggcacacaccatgacgaagaaagagaagaaatccttcaaccag 182
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct: 16491081 ctgcttcccttgtcgtcggcacacagcatgacgaagaaagagaggaaatccttcaaccag 16491140
Query: 183 agcatggccgaatggaagctgttcttgtacaacccgaccaccggagagttcctggggcgc 242
|||||||||||||||||||| |||||||||||||||||||| ||| ||||||||||||||
Sbjct: 16491141 agcatggccgaatggaagctcttcttgtacaacccgaccactggacagttcctggggcgc 16491200
Query: 243 tccgccaagagctggggtttgatcttgctcttctacctagtcttttatgtgttcctggct 302
|| |||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16491201 tctgccaagagctggaggttgatcttgctcttctacctagtcttttatgtgttcctggct 16491260
Query: 303 gcactctttgcattcacaatgtgggttatgcttcagaccctgaacgatgaggttccaaaa 362
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 16491261 gcactctttgcattcacaatgtgggttatgcttcagatcctgaacgatgaggttccaaaa 16491320
Query: 363 tatcgtgaccagatttctagtccaggacttatggtttttccaaaaccagtgtcagcgttg 422
||||| ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct: 16491321 tatcgcgaccagatttctagttcaggacttacggtttttccaaaaccagtgtcagcgttg 16491380
Query: 423 gattattcattcagtgtgtctgatccagactcctataaagggtacattgatgaccttaag 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16491381 gattattcattcagtgtgtctgatccagactcctataaagggtacattgatgaccttaag 16491440
Query: 483 aaatttctaaagccatatgacttagaagaacagaagaatctcacagattgtaccgatgga 542
||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 16491441 aaatttctaaagcca---------gaagaacagaagaatctcacagattgtaccgatgga 16491491
Query: 543 aaatttcttgaacagaagggtccacattatgatgcatgtcggtttcctcttaacttactt 602
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 16491492 gaatttcttgaacagaagggtccgcattatgatgcatgtcggtttcctcttaacttactt 16491551
Query: 603 gaagcatgcagtggtgagattgatccccagtttggctactccagaggaaacccttgtatt 662
||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 16491552 gaagcatgcagcggtgagattgatccccagtttggctactccagaggaaaccctggtatt 16491611
Query: 663 cttgtgaaaatgaacagaataattggattaaagcctcaaggagaaccaaggatagaatgt 722
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 16491612 cttgtgaaaatgaacagaataattggattaaagcctcaaggagaaccgaggatagaatgt 16491671
Query: 723 atttcgaagggtgaaagcacagcagttctatcaacttatcctcccaatggaaagatagac 782
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16491672 atttcgaagggtgaaagcacagcagttctatcaacttatcctcccaatggaaagatagac 16491731
Query: 783 ataaagtattttccatattatggnnnnnnnctgcatgggaactatctacagccattagtt 842
||||||||||||| |||||||| |||||| |||||||||| ||||||||| ||
Sbjct: 16491732 gtaaagtattttccgtattatggaaaaaaactgcataggaactatctgcagccattactt 16491791
Query: 843 gctgtccagctcacctttgatgctggcaatgacatgaacgaagtaacagttgagtgcaag 902
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 16491792 gccctccagctcacctttgatgctggcaatgacatgaacgaagtaacagttgagtgcgag 16491851
Query: 903 attgatggatcacccaacctaaaaaaccaggatgaccgtgacaagtttttaggacgagtt 962
||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||
Sbjct: 16491852 attgatggatcacccaacctaaaaaaccaggatgatcgtgacaagtttttaggatgagtt 16491911
Query: 963 gcattcaaagtcaccgtgcatgcatagtaag 993
|| |||||| |||||||||||||||||||||
Sbjct: 16491912 gctttcaaaatcaccgtgcatgcatagtaag 16491942
>Sscrofa_Chr06
|| Length = 157765593
Score = 1156 bits (583), Expect = 0.0
Identities = 828/907 (91%), Gaps = 15/907 (1%)
Strand = Plus / Minus
Query: 93 tccagcccagacgcacctccgtactcctcgctgcttcccttgtcgtcggcacacaccatg 152
||||||| ||| |||||||| | ||||| ||||||||||| || |||||| ||||||||
Sbjct: 130801815 tccagccgagaagcacctccatgctccttgctgcttccctcatcatcggcaaacaccatg 130801756
Query: 153 acgaagaaagagaagaaatccttcaaccagagcatggccgaatggaagctgttcttgtac 212
| |||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||
Sbjct: 130801755 atgaagaaagagaagaaatccttcaaccagagcatggctgaatggaagct---cttttac 130801699
Query: 213 aacccgaccaccggagagttcctggggcgctccgccaagagctggggtttgatcttgctc 272
||||||||| |||||||||||||||||||| | |||||||||||||||||||| |||
Sbjct: 130801698 --cccgaccactggagagttcctggggcgctctgtcaagagctggggtttgatctcgctt 130801641
Query: 273 ttctacctagtcttttatgtgttcctggctgcactctttgcattcacaatgtggg----t 328
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 130801640 ttctacctagtcttttatgtgttcctggctgcactctttgcattcacagtgtgggatatg 130801581
Query: 329 tatgcttcagaccctgaacgatgaggttccaaaatatcgtgaccagatttctagtccagg 388
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 130801580 tatgcttcagaccctgaaccatgaggttccaaaatatcgtgaccagatttctagtccagg 130801521
Query: 389 actt-atggtttttccaaaaccagtgtcagcgttggattattcattcagtgtgtctgatc 447
|||| | |||||||||||||||||||| || |||||||||||| | |||||||||||
Sbjct: 130801520 acttaacggtttttccaaaaccagtgtaagtgttggattattcgt----tgtgtctgatc 130801465
Query: 448 cagactcctataaagggtacattgatgaccttaagaaatttctaaagccatatgacttag 507
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130801464 cagagtcctataaagggtacattgatgaccttaagaaatttctaaagccatatgacttag 130801405
Query: 508 aagaacagaagaatctcacagattgtaccgatggaa-aatttcttgaacagaagggtcca 566
|||||||||||||||||||||||||| || |||||| | ||| ||||||||||||| |||
Sbjct: 130801404 aagaacagaagaatctcacagattgtccctatggaacatttttttgaacagaagggacca 130801345
Query: 567 cattatgatgcatgtcggtttcctcttaacttacttgaagcatgcagtggtgagattgat 626
||||||||||||||||||||| || | ||||||||||| ||||||||| || |||||||
Sbjct: 130801344 gattatgatgcatgtcggtttcttcctcacttacttgaaacatgcagtgttgtgattgat 130801285
Query: 627 ccccagtttggctactccagaggaaacccttgtattcttgtgaaaatgaacagaataatt 686
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 130801284 ccccagtttggctactccagaggaaacccttgtattcttgtgaaaatgaacagagtaatt 130801225
Query: 687 ggattaaagcctcaaggagaaccaaggatagaatgtatttcgaagggtgaaagcacagca 746
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 130801224 ggattaaagcctcaaggagaaccaaggatagaatgtattttgaagggtgaaagcacagca 130801165
Query: 747 gttctatcaacttatcctcccaatggaaagatagacataaagtattttccatattatggn 806
||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||
Sbjct: 130801164 gttctatcaacttatcctcccaatggaaagacagatgtaaaatattttccatattatgga 130801105
Query: 807 nnnnnnctgcatgggaactatctacagccattagttgctgtccagctcacctttgatgct 866
|||||| |||||||||| |||||||||||||| || |||||||||||||||
Sbjct: 130801104 aaaaaactgcataggaactatctgcagccattagttgccatctgcctcacctttgatgct 130801045
Query: 867 ggcaatgacatgaacgaagtaacagttgagtgcaagattgatggatcacccaacctaaaa 926
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 130801044 ggcaatggcatgaacgaagtaacagttgagtgcaagattgatggatcacgcaacctaaaa 130800985
Query: 927 aaccaggatgaccgtgacaagtttttaggacgagttgcattcaaagtcaccgtgcatgca 986
||||||||||| | |||||||||||||||| ||||||| |||||| ||||||||||||||
Sbjct: 130800984 aaccaggatgatcatgacaagtttttaggatgagttgctttcaaaatcaccgtgcatgca 130800925
Query: 987 tagtaag 993
|||||||
Sbjct: 130800924 tagtaag 130800918
>Sscrofa_Chr13
|| Length = 218635234
Score = 367 bits (185), Expect = 8e-99
Identities = 185/185 (100%)
Strand = Plus / Plus
Query: 496 catatgacttagaagaacagaagaatctcacagattgtaccgatggaaaatttcttgaac 555
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 90509630 catatgacttagaagaacagaagaatctcacagattgtaccgatggaaaatttcttgaac 90509689
Query: 556 agaagggtccacattatgatgcatgtcggtttcctcttaacttacttgaagcatgcagtg 615
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 90509690 agaagggtccacattatgatgcatgtcggtttcctcttaacttacttgaagcatgcagtg 90509749
Query: 616 gtgagattgatccccagtttggctactccagaggaaacccttgtattcttgtgaaaatga 675
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 90509750 gtgagattgatccccagtttggctactccagaggaaacccttgtattcttgtgaaaatga 90509809
Query: 676 acaga 680
|||||
Sbjct: 90509810 acaga 90509814
Score = 347 bits (175), Expect = 7e-93
Identities = 182/183 (99%), Gaps = 1/183 (0%)
Strand = Plus / Plus
Query: 819 gggaactatctacagccattagttgctgtccagctcacctttgatgctggcaatgacatg 878
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 90522905 gggaactatctacagccattagttgctgtccagctcacctttgatgctggcaatgacatg 90522964
Query: 879 aacgaagtaacagttgagtgcaagattgatggatcacccaacctaaaaaaccaggatgac 938
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 90522965 aacgaagtaacagttgagtgcaagattgatggatcacccaacctaaaaaaccaggatgac 90523024
Query: 939 cgtgacaagtttttaggacgagttgcattcaaagtcaccgtgcatgcatagtaaggagtt 998
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 90523025 cgtgacaagtttttaggacgagttgcattcaaagtcaccgtgcatgcatagt-aggagtt 90523083
Query: 999 agg 1001
|||
Sbjct: 90523084 agg 90523086
Score = 333 bits (168), Expect = 1e-88
Identities = 168/168 (100%)
Strand = Plus / Minus
Query: 93 tccagcccagacgcacctccgtactcctcgctgcttcccttgtcgtcggcacacaccatg 152
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 90583870 tccagcccagacgcacctccgtactcctcgctgcttcccttgtcgtcggcacacaccatg 90583811
Query: 153 acgaagaaagagaagaaatccttcaaccagagcatggccgaatggaagctgttcttgtac 212
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 90583810 acgaagaaagagaagaaatccttcaaccagagcatggccgaatggaagctgttcttgtac 90583751
Query: 213 aacccgaccaccggagagttcctggggcgctccgccaagagctggggt 260
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 90583750 aacccgaccaccggagagttcctggggcgctccgccaagagctggggt 90583703
Score = 260 bits (131), Expect = 1e-66
Identities = 131/131 (100%)
Strand = Plus / Plus
Query: 258 ggtttgatcttgctcttctacctagtcttttatgtgttcctggctgcactctttgcattc 317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 90496249 ggtttgatcttgctcttctacctagtcttttatgtgttcctggctgcactctttgcattc 90496308
Query: 318 acaatgtgggttatgcttcagaccctgaacgatgaggttccaaaatatcgtgaccagatt 377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 90496309 acaatgtgggttatgcttcagaccctgaacgatgaggttccaaaatatcgtgaccagatt 90496368
Query: 378 tctagtccagg 388
|||||||||||
Sbjct: 90496369 tctagtccagg 90496379
Score = 218 bits (110), Expect = 4e-54
Identities = 110/110 (100%)
Strand = Plus / Plus
Query: 386 aggacttatggtttttccaaaaccagtgtcagcgttggattattcattcagtgtgtctga 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 90502686 aggacttatggtttttccaaaaccagtgtcagcgttggattattcattcagtgtgtctga 90502745
Query: 446 tccagactcctataaagggtacattgatgaccttaagaaatttctaaagc 495
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 90502746 tccagactcctataaagggtacattgatgaccttaagaaatttctaaagc 90502795
Score = 151 bits (76), Expect = 9e-34
Identities = 76/76 (100%)
Strand = Plus / Plus
Query: 730 agggtgaaagcacagcagttctatcaacttatcctcccaatggaaagatagacataaagt 789
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 90518100 agggtgaaagcacagcagttctatcaacttatcctcccaatggaaagatagacataaagt 90518159
Query: 790 attttccatattatgg 805
||||||||||||||||
Sbjct: 90518160 attttccatattatgg 90518175
Score = 103 bits (52), Expect = 2e-19
Identities = 52/52 (100%)
Strand = Plus / Plus
Query: 681 ataattggattaaagcctcaaggagaaccaaggatagaatgtatttcgaagg 732
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 90512937 ataattggattaaagcctcaaggagaaccaaggatagaatgtatttcgaagg 90512988
Score = 97.6 bits (49), Expect = 1e-17
Identities = 109/127 (85%), Gaps = 4/127 (3%)
Strand = Plus / Minus
Query: 680 aataattggattaaagcctcaaggagaaccaaggatagaatgtatttcgaagggtgaaag 739
|||||||||||||||||||||||| ||||| ||||||| ||||||||| |||| |||||
Sbjct: 110806330 aataattggattaaagcctcaaggggaaccgaggatagcatgtatttcaaaggatgaaaa 110806271
Query: 740 cacagcagttctatcaacttatcctcccaatggaaagatagac-ataaagtattttccat 798
||| |||||||||||| |||||||||||||| |||||| || | ||||||||||
Sbjct: 110806270 tacaagagttctatcaac---tcctcccaatggaattatagactttacaatattttccat 110806214
Query: 799 attatgg 805
|||||||
Sbjct: 110806213 attatgg 110806207
Score = 89.7 bits (45), Expect = 3e-15
Identities = 45/45 (100%)
Strand = Plus / Minus
Query: 2 agcgcagtcggcttgagcgctcacggtagcgaggaggtttcctca 46
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 90583961 agcgcagtcggcttgagcgctcacggtagcgaggaggtttcctca 90583917
>Sscrofa_Chr07
|| Length = 134764511
Score = 85.7 bits (43), Expect = 4e-14
Identities = 115/139 (82%)
Strand = Plus / Minus
Query: 267 ttgctcttctacctagtcttttatgtgttcctggctgcactctttgcattcacaatgtgg 326
|||||||||| ||||||| | || ||| || ||||||||||| |||||||||||||
Sbjct: 85284886 ttgctcttctgtttagtcttctgtgggttactagctgcactcttcttattcacaatgtgg 85284827
Query: 327 gttatgcttcagaccctgaacgatgaggttccaaaatatcgtgaccagatttctagtcca 386
| |||| ||||||| | || ||||||||||||||| ||| ||||||| || |||||| |
Sbjct: 85284826 ggtatgattcagactccaaaagatgaggttccaaaacatcatgaccagcttcctagtcta 85284767
Query: 387 ggacttatggtttttccaa 405
||||||| |||| ||||||
Sbjct: 85284766 ggacttaaggttattccaa 85284748
Score = 81.8 bits (41), Expect = 7e-13
Identities = 80/93 (86%)
Strand = Plus / Plus
Query: 314 attcacaatgtgggttatgcttcagaccctgaacgatgaggttccaaaatatcgtgacca 373
|||||||||||||| |||| ||||||| | || |||| |||||||||| ||| ||||||
Sbjct: 84083574 attcacaatgtggggtatgattcagactccaaaagatgtggttccaaaacatcatgacca 84083633
Query: 374 gatttctagtccaggacttatggtttttccaaa 406
| || ||||||||||||||| |||| |||||||
Sbjct: 84083634 gcttcctagtccaggacttaaggttattccaaa 84083666
Score = 71.9 bits (36), Expect = 6e-10
Identities = 114/140 (81%)
Strand = Plus / Plus
Query: 267 ttgctcttctacctagtcttttatgtgttcctggctgcactctttgcattcacaatgtgg 326
|||||||||| ||||||| | || ||| || ||||||||||| |||||| ||||||
Sbjct: 133482625 ttgctcttctgtttagtcttctgtgggttactagctgcactcttcttattcacgatgtgg 133482684
Query: 327 gttatgcttcagaccctgaacgatgaggttccaaaatatcgtgaccagatttctagtcca 386
||| || ||||||| | || || ||||||||||| ||| ||||||| || ||||||||
Sbjct: 133482685 gttgtgattcagactccaaaagacaaggttccaaaacatcatgaccagcttcctagtcca 133482744
Query: 387 ggacttatggtttttccaaa 406
||||||| |||| |||||||
Sbjct: 133482745 ggacttaaggttattccaaa 133482764
Score = 61.9 bits (31), Expect = 6e-07
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 654 ccttgtattcttgtgaaaatgaacagaataattggattaaagcctcaaggagaaccaag 712
|||||||||||| ||||||| | |||||||||||| | ||||||||||| ||||||||
Sbjct: 84083901 ccttgtattcttatgaaaataagcagaataattgggtgaaagcctcaagaggaaccaag 84083959
Score = 61.9 bits (31), Expect = 6e-07
Identities = 52/59 (88%)
Strand = Plus / Minus
Query: 654 ccttgtattcttgtgaaaatgaacagaataattggattaaagcctcaaggagaaccaag 712
|||||||||||| ||||||| | |||||||||||| | ||||| ||||| |||||||||
Sbjct: 85284510 ccttgtattcttatgaaaataagcagaataattgggtaaaagcttcaagaagaaccaag 85284452
Score = 58.0 bits (29), Expect = 1e-05
Identities = 50/57 (87%)
Strand = Plus / Plus
Query: 656 ttgtattcttgtgaaaatgaacagaataattggattaaagcctcaaggagaaccaag 712
|||||||||| ||||||| | |||||||||||| | ||||||||||| ||||||||
Sbjct: 133483000 ttgtattcttatgaaaataagcagaataattgggtgaaagcctcaagaggaaccaag 133483056
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 28,098,548
Number of extensions: 140
Number of successful extensions: 140
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 133
Number of HSP's successfully gapped: 19
Length of query: 1001
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 980
Effective length of database: 2,808,413,156
Effective search space: 2752244892880
Effective search space used: 2752244892880
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)