Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002899
(982 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001073084.1| glutathione S-transferase kappa 1 [Bos tauru... 392 e-109
>ref|NP_001073084.1| glutathione S-transferase kappa 1 [Bos taurus].
Length = 226
Score = 392 bits (1006), Expect = e-109
Identities = 186/226 (82%), Positives = 207/226 (91%)
Frame = +3
Query: 156 MGPLPRTVELFYDVLSPYSWLAFEILCRYKNIWNVNLQLCPSLIAGILKDSGNQPPAMLP 335
MGP+PRT+ELFYDVLSPYSWLAFE+LCRYKNIWN++LQL P+LI G L++SGNQPPAMLP
Sbjct: 1 MGPVPRTLELFYDVLSPYSWLAFEVLCRYKNIWNISLQLQPTLIGGNLRESGNQPPAMLP 60
Query: 336 RKAVYMKEDIKRLGHHLQVPIHFPKDFFSTILGKGSLTAMRFLTTVKLEHPEMLEKVSRE 515
KAVY++ D++ L H QVPIHFPKDFFS IL KGSLTAMRFLT VK+EHPE+LEKV RE
Sbjct: 61 HKAVYLRSDLRLLSQHHQVPIHFPKDFFSVILKKGSLTAMRFLTAVKMEHPELLEKVPRE 120
Query: 516 LWMRVWSRDEDITEPQSVLAAAEKAGMSTGQARGLLERVSTPEVKNQLKETTEAACKYGA 695
LWMRVWSRDEDITEP S+LAAAEKAGMS QA+ LLE VSTP+VKNQLKETTEAACKYGA
Sbjct: 121 LWMRVWSRDEDITEPPSILAAAEKAGMSMEQAQELLEWVSTPQVKNQLKETTEAACKYGA 180
Query: 696 FGLPITVAHLDDKTHMLFGSDRMELLAHLLGEKWMGPVPPAVNARL 833
FGLP+TVAHL D+THMLFGSDR+ELLAHLLGEKWMGPVPPAVNA+L
Sbjct: 181 FGLPVTVAHLQDETHMLFGSDRLELLAHLLGEKWMGPVPPAVNAKL 226
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 45,404,306
Number of extensions: 1520973
Number of successful extensions: 6446
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6422
Number of HSP's successfully gapped: 1
Length of query: 327
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 224
Effective length of database: 14,273,310
Effective search space: 3197221440
Effective search space used: 3197221440
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002899
(982 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_532742.2| PREDICTED: similar to Glutathione S-transferase... 399 e-111
Alignment gi|XP_852361.1| PREDICTED: similar to Glutathione S-transferase... 276 2e-74
>ref|XP_532742.2| PREDICTED: similar to Glutathione S-transferase kappa 1 (GST 13-13)
(Glutathione S-transferase subunit 13) (GST class-kappa)
(GSTK1-1) (hGSTK1) [Canis familiaris].
Length = 226
Score = 399 bits (1024), Expect = e-111
Identities = 188/226 (83%), Positives = 209/226 (92%)
Frame = +3
Query: 156 MGPLPRTVELFYDVLSPYSWLAFEILCRYKNIWNVNLQLCPSLIAGILKDSGNQPPAMLP 335
MGPLPRT+ELFYDVLSPYSWL FE+LCRYKNIWN+NLQL PSLIAGI+KDSGNQPPA+LP
Sbjct: 1 MGPLPRTLELFYDVLSPYSWLGFEVLCRYKNIWNINLQLRPSLIAGIMKDSGNQPPALLP 60
Query: 336 RKAVYMKEDIKRLGHHLQVPIHFPKDFFSTILGKGSLTAMRFLTTVKLEHPEMLEKVSRE 515
RKA Y+ DI+ LG H+QVP+ FPKDFFS IL KGSL+AMRFLT V +EHPEMLEKVSRE
Sbjct: 61 RKAQYLINDIRLLGQHVQVPMQFPKDFFSVILEKGSLSAMRFLTAVNMEHPEMLEKVSRE 120
Query: 516 LWMRVWSRDEDITEPQSVLAAAEKAGMSTGQARGLLERVSTPEVKNQLKETTEAACKYGA 695
LWMRVWSRDEDITEPQS+LAAAEKAGMST QA+GLLE++ TP+VKN+LKE TEAACKYGA
Sbjct: 121 LWMRVWSRDEDITEPQSILAAAEKAGMSTEQAQGLLEKIVTPKVKNKLKENTEAACKYGA 180
Query: 696 FGLPITVAHLDDKTHMLFGSDRMELLAHLLGEKWMGPVPPAVNARL 833
FGLP+TVAHLD +THMLFGSDRMELLAHLLGEKWMGPVPPA+N +L
Sbjct: 181 FGLPVTVAHLDGQTHMLFGSDRMELLAHLLGEKWMGPVPPAINPKL 226
>ref|XP_852361.1| PREDICTED: similar to Glutathione S-transferase kappa 1 (GST 13-13)
(Glutathione S-transferase subunit 13) (GST class-kappa)
(GSTK1-1) (hGSTK1) [Canis familiaris].
Length = 179
Score = 276 bits (706), Expect = 2e-74
Identities = 134/179 (74%), Positives = 155/179 (86%)
Frame = +3
Query: 297 LKDSGNQPPAMLPRKAVYMKEDIKRLGHHLQVPIHFPKDFFSTILGKGSLTAMRFLTTVK 476
+K S NQ PA+LPRKA Y+K DI+ G H+QVP+ FPKDFF IL KGSL+AMRFLT V
Sbjct: 1 MKGSRNQLPALLPRKAQYLKNDIRLRGQHVQVPMQFPKDFFFVILEKGSLSAMRFLTAVN 60
Query: 477 LEHPEMLEKVSRELWMRVWSRDEDITEPQSVLAAAEKAGMSTGQARGLLERVSTPEVKNQ 656
++HPEMLE+VSRELWM VWSRDEDITEPQS+LAAAEKAGMST QA+GLLE++ TP+VKN+
Sbjct: 61 MKHPEMLEEVSRELWMCVWSRDEDITEPQSMLAAAEKAGMSTEQAQGLLEKIVTPKVKNK 120
Query: 657 LKETTEAACKYGAFGLPITVAHLDDKTHMLFGSDRMELLAHLLGEKWMGPVPPAVNARL 833
LKE TEA+ KY AFGLP+TVAHLD +THMLFGSDRMELL HLLGEKWMGPVP A+N +L
Sbjct: 121 LKENTEASGKYRAFGLPVTVAHLDGQTHMLFGSDRMELLTHLLGEKWMGPVPAAINPKL 179
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 47,046,976
Number of extensions: 1548324
Number of successful extensions: 6448
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 6439
Number of HSP's successfully gapped: 2
Length of query: 327
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 224
Effective length of database: 15,440,896
Effective search space: 3458760704
Effective search space used: 3458760704
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002899
(982 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_057001.1| glutathione S-transferase kappa 1 isoform a [Ho... 399 e-111
Alignment gi|NP_001137152.1| glutathione S-transferase kappa 1 isoform c ... 369 e-102
Alignment gi|NP_001137151.1| glutathione S-transferase kappa 1 isoform b ... 362 e-100
Alignment gi|NP_001137153.1| glutathione S-transferase kappa 1 isoform d ... 315 5e-86
>ref|NP_057001.1| glutathione S-transferase kappa 1 isoform a [Homo sapiens].
Length = 226
Score = 399 bits (1024), Expect = e-111
Identities = 187/226 (82%), Positives = 208/226 (92%)
Frame = +3
Query: 156 MGPLPRTVELFYDVLSPYSWLAFEILCRYKNIWNVNLQLCPSLIAGILKDSGNQPPAMLP 335
MGPLPRTVELFYDVLSPYSWL FEILCRY+NIWN+NLQL PSLI GI+KDSGN+PP +LP
Sbjct: 1 MGPLPRTVELFYDVLSPYSWLGFEILCRYQNIWNINLQLRPSLITGIMKDSGNKPPGLLP 60
Query: 336 RKAVYMKEDIKRLGHHLQVPIHFPKDFFSTILGKGSLTAMRFLTTVKLEHPEMLEKVSRE 515
RK +YM D+K L HHLQ+PIHFPKDF S +L KGSL+AMRFLT V LEHPEMLEK SRE
Sbjct: 61 RKGLYMANDLKLLRHHLQIPIHFPKDFLSVMLEKGSLSAMRFLTAVNLEHPEMLEKASRE 120
Query: 516 LWMRVWSRDEDITEPQSVLAAAEKAGMSTGQARGLLERVSTPEVKNQLKETTEAACKYGA 695
LWMRVWSR+EDITEPQS+LAAAEKAGMS QA+GLLE+++TP+VKNQLKETTEAAC+YGA
Sbjct: 121 LWMRVWSRNEDITEPQSILAAAEKAGMSAEQAQGLLEKIATPKVKNQLKETTEAACRYGA 180
Query: 696 FGLPITVAHLDDKTHMLFGSDRMELLAHLLGEKWMGPVPPAVNARL 833
FGLPITVAH+D +THMLFGSDRMELLAHLLGEKWMGP+PPAVNARL
Sbjct: 181 FGLPITVAHVDGQTHMLFGSDRMELLAHLLGEKWMGPIPPAVNARL 226
>ref|NP_001137152.1| glutathione S-transferase kappa 1 isoform c [Homo sapiens].
Length = 214
Score = 369 bits (948), Expect = e-102
Identities = 177/226 (78%), Positives = 196/226 (86%)
Frame = +3
Query: 156 MGPLPRTVELFYDVLSPYSWLAFEILCRYKNIWNVNLQLCPSLIAGILKDSGNQPPAMLP 335
MGPLPRTVELFYDVLSPYSWL FEILCRY+NIWN+NLQL PSLI GI+KDSGN+PP +LP
Sbjct: 1 MGPLPRTVELFYDVLSPYSWLGFEILCRYQNIWNINLQLRPSLITGIMKDSGNKPPGLLP 60
Query: 336 RKAVYMKEDIKRLGHHLQVPIHFPKDFFSTILGKGSLTAMRFLTTVKLEHPEMLEKVSRE 515
RK +YM D+K L HHLQ+PIHFPKDF S +L KGSL+AMRFLT V LEHPEMLEK SRE
Sbjct: 61 RKGLYMANDLKLLRHHLQIPIHFPKDFLSVMLEKGSLSAMRFLTAVNLEHPEMLEKASRE 120
Query: 516 LWMRVWSRDEDITEPQSVLAAAEKAGMSTGQARGLLERVSTPEVKNQLKETTEAACKYGA 695
LWMRVWSR AAEKAGMS QA+GLLE+++TP+VKNQLKETTEAAC+YGA
Sbjct: 121 LWMRVWSR------------AAEKAGMSAEQAQGLLEKIATPKVKNQLKETTEAACRYGA 168
Query: 696 FGLPITVAHLDDKTHMLFGSDRMELLAHLLGEKWMGPVPPAVNARL 833
FGLPITVAH+D +THMLFGSDRMELLAHLLGEKWMGP+PPAVNARL
Sbjct: 169 FGLPITVAHVDGQTHMLFGSDRMELLAHLLGEKWMGPIPPAVNARL 214
>ref|NP_001137151.1| glutathione S-transferase kappa 1 isoform b [Homo sapiens].
Length = 282
Score = 362 bits (929), Expect = e-100
Identities = 184/282 (65%), Positives = 206/282 (73%), Gaps = 56/282 (19%)
Frame = +3
Query: 156 MGPLPRTVELFYDVLSPYSWLAFEILCRYKNIWNVNLQLCPSLIAGILKDSGNQPPAMLP 335
MGPLPRTVELFYDVLSPYSWL FEILCRY+NIWN+NLQL PSLI GI+KDSGN+PP +LP
Sbjct: 1 MGPLPRTVELFYDVLSPYSWLGFEILCRYQNIWNINLQLRPSLITGIMKDSGNKPPGLLP 60
Query: 336 RKAVYMKEDIKRLGHHLQVPIHFPKDFFSTILGKGSLTAMRFLTTVKLEHPEMLEKVSRE 515
RK +YM D+K L HHLQ+PIHFPKDF S +L KGSL+AMRFLT V LEHPEMLEK SRE
Sbjct: 61 RKGLYMANDLKLLRHHLQIPIHFPKDFLSVMLEKGSLSAMRFLTAVNLEHPEMLEKASRE 120
Query: 516 LWMRVWSR-------------DEDITEP-------------------------------- 560
LWMRVWSR D+ +T P
Sbjct: 121 LWMRVWSRVSVGLWESSGRTLDDFLTFPRHVFRVMILPPPGGSTVLPVTPLSPHRLPAVF 180
Query: 561 -----------QSVLAAAEKAGMSTGQARGLLERVSTPEVKNQLKETTEAACKYGAFGLP 707
QS+LAAAEKAGMS QA+GLLE+++TP+VKNQLKETTEAAC+YGAFGLP
Sbjct: 181 SSSQNEDITEPQSILAAAEKAGMSAEQAQGLLEKIATPKVKNQLKETTEAACRYGAFGLP 240
Query: 708 ITVAHLDDKTHMLFGSDRMELLAHLLGEKWMGPVPPAVNARL 833
ITVAH+D +THMLFGSDRMELLAHLLGEKWMGP+PPAVNARL
Sbjct: 241 ITVAHVDGQTHMLFGSDRMELLAHLLGEKWMGPIPPAVNARL 282
>ref|NP_001137153.1| glutathione S-transferase kappa 1 isoform d [Homo sapiens].
Length = 183
Score = 315 bits (806), Expect = 5e-86
Identities = 159/226 (70%), Positives = 174/226 (76%)
Frame = +3
Query: 156 MGPLPRTVELFYDVLSPYSWLAFEILCRYKNIWNVNLQLCPSLIAGILKDSGNQPPAMLP 335
MGPLPRTVELFYDVLSPYSWL FEILCRY+NIWN+NLQL PSLI GI+KDSG
Sbjct: 1 MGPLPRTVELFYDVLSPYSWLGFEILCRYQNIWNINLQLRPSLITGIMKDSG-------- 52
Query: 336 RKAVYMKEDIKRLGHHLQVPIHFPKDFFSTILGKGSLTAMRFLTTVKLEHPEMLEKVSRE 515
SL+AMRFLT V LEHPEMLEK SRE
Sbjct: 53 -----------------------------------SLSAMRFLTAVNLEHPEMLEKASRE 77
Query: 516 LWMRVWSRDEDITEPQSVLAAAEKAGMSTGQARGLLERVSTPEVKNQLKETTEAACKYGA 695
LWMRVWSR+EDITEPQS+LAAAEKAGMS QA+GLLE+++TP+VKNQLKETTEAAC+YGA
Sbjct: 78 LWMRVWSRNEDITEPQSILAAAEKAGMSAEQAQGLLEKIATPKVKNQLKETTEAACRYGA 137
Query: 696 FGLPITVAHLDDKTHMLFGSDRMELLAHLLGEKWMGPVPPAVNARL 833
FGLPITVAH+D +THMLFGSDRMELLAHLLGEKWMGP+PPAVNARL
Sbjct: 138 FGLPITVAHVDGQTHMLFGSDRMELLAHLLGEKWMGPIPPAVNARL 183
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 46,149,767
Number of extensions: 1518646
Number of successful extensions: 6094
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 6070
Number of HSP's successfully gapped: 6
Length of query: 327
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 224
Effective length of database: 14,901,872
Effective search space: 3338019328
Effective search space used: 3338019328
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002899
(982 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_083831.1| glutathione S-transferase kappa 1 [Mus musculus]. 344 5e-95
>ref|NP_083831.1| glutathione S-transferase kappa 1 [Mus musculus].
Length = 226
Score = 344 bits (883), Expect = 5e-95
Identities = 163/226 (72%), Positives = 192/226 (84%)
Frame = +3
Query: 156 MGPLPRTVELFYDVLSPYSWLAFEILCRYKNIWNVNLQLCPSLIAGILKDSGNQPPAMLP 335
MGP PR +ELFYDVLSPYSWL FE+LCRY+++WN+ LQL P+LIAGI+KDSGNQPPAM+P
Sbjct: 1 MGPAPRILELFYDVLSPYSWLGFEVLCRYQHLWNIKLQLRPTLIAGIMKDSGNQPPAMVP 60
Query: 336 RKAVYMKEDIKRLGHHLQVPIHFPKDFFSTILGKGSLTAMRFLTTVKLEHPEMLEKVSRE 515
RK Y+ ++I L QVP++ PKDFF + KGS+ AMRFLTTV +E PEMLEKVSRE
Sbjct: 61 RKGQYIFKEIPLLKQFFQVPLNIPKDFFGETVKKGSINAMRFLTTVSMEQPEMLEKVSRE 120
Query: 516 LWMRVWSRDEDITEPQSVLAAAEKAGMSTGQARGLLERVSTPEVKNQLKETTEAACKYGA 695
+WMRVWSRDEDITE QS+LAAA KAGMST QA+ LE++ST +VKN+L E T+AACKYGA
Sbjct: 121 IWMRVWSRDEDITEYQSILAAAVKAGMSTAQAQHFLEKISTQQVKNKLIENTDAACKYGA 180
Query: 696 FGLPITVAHLDDKTHMLFGSDRMELLAHLLGEKWMGPVPPAVNARL 833
FGLP TVAH+D KT+MLFGSDR+ELLA+LLGEKWMGPVPP NARL
Sbjct: 181 FGLPTTVAHVDGKTYMLFGSDRLELLAYLLGEKWMGPVPPTANARL 226
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 38,931,647
Number of extensions: 1255961
Number of successful extensions: 5014
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4983
Number of HSP's successfully gapped: 1
Length of query: 327
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 225
Effective length of database: 12,553,887
Effective search space: 2824624575
Effective search space used: 2824624575
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002899
(982 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003134621.1| PREDICTED: glutathione S-transferase kappa 1... 462 e-131
Alignment gi|XP_003134623.1| PREDICTED: glutathione S-transferase kappa 1... 431 e-121
Alignment gi|XP_003134622.1| PREDICTED: glutathione S-transferase kappa 1... 428 e-120
Alignment gi|XP_003134624.1| PREDICTED: glutathione S-transferase kappa 1... 352 2e-97
>ref|XP_003134621.1| PREDICTED: glutathione S-transferase kappa 1-like isoform 1 [Sus
scrofa].
Length = 226
Score = 462 bits (1190), Expect = e-131
Identities = 226/226 (100%), Positives = 226/226 (100%)
Frame = +3
Query: 156 MGPLPRTVELFYDVLSPYSWLAFEILCRYKNIWNVNLQLCPSLIAGILKDSGNQPPAMLP 335
MGPLPRTVELFYDVLSPYSWLAFEILCRYKNIWNVNLQLCPSLIAGILKDSGNQPPAMLP
Sbjct: 1 MGPLPRTVELFYDVLSPYSWLAFEILCRYKNIWNVNLQLCPSLIAGILKDSGNQPPAMLP 60
Query: 336 RKAVYMKEDIKRLGHHLQVPIHFPKDFFSTILGKGSLTAMRFLTTVKLEHPEMLEKVSRE 515
RKAVYMKEDIKRLGHHLQVPIHFPKDFFSTILGKGSLTAMRFLTTVKLEHPEMLEKVSRE
Sbjct: 61 RKAVYMKEDIKRLGHHLQVPIHFPKDFFSTILGKGSLTAMRFLTTVKLEHPEMLEKVSRE 120
Query: 516 LWMRVWSRDEDITEPQSVLAAAEKAGMSTGQARGLLERVSTPEVKNQLKETTEAACKYGA 695
LWMRVWSRDEDITEPQSVLAAAEKAGMSTGQARGLLERVSTPEVKNQLKETTEAACKYGA
Sbjct: 121 LWMRVWSRDEDITEPQSVLAAAEKAGMSTGQARGLLERVSTPEVKNQLKETTEAACKYGA 180
Query: 696 FGLPITVAHLDDKTHMLFGSDRMELLAHLLGEKWMGPVPPAVNARL 833
FGLPITVAHLDDKTHMLFGSDRMELLAHLLGEKWMGPVPPAVNARL
Sbjct: 181 FGLPITVAHLDDKTHMLFGSDRMELLAHLLGEKWMGPVPPAVNARL 226
>ref|XP_003134623.1| PREDICTED: glutathione S-transferase kappa 1-like isoform 3 [Sus
scrofa].
Length = 214
Score = 431 bits (1108), Expect = e-121
Identities = 214/226 (94%), Positives = 214/226 (94%)
Frame = +3
Query: 156 MGPLPRTVELFYDVLSPYSWLAFEILCRYKNIWNVNLQLCPSLIAGILKDSGNQPPAMLP 335
MGPLPRTVELFYDVLSPYSWLAFEILCRYKNIWNVNLQLCPSLIAGILKDSGNQPPAMLP
Sbjct: 1 MGPLPRTVELFYDVLSPYSWLAFEILCRYKNIWNVNLQLCPSLIAGILKDSGNQPPAMLP 60
Query: 336 RKAVYMKEDIKRLGHHLQVPIHFPKDFFSTILGKGSLTAMRFLTTVKLEHPEMLEKVSRE 515
RKAVYMKEDIKRLGHHLQVPIHFPKDFFSTILGKGSLTAMRFLTTVKLEHPEMLEKVSRE
Sbjct: 61 RKAVYMKEDIKRLGHHLQVPIHFPKDFFSTILGKGSLTAMRFLTTVKLEHPEMLEKVSRE 120
Query: 516 LWMRVWSRDEDITEPQSVLAAAEKAGMSTGQARGLLERVSTPEVKNQLKETTEAACKYGA 695
LWMRVWSR AAEKAGMSTGQARGLLERVSTPEVKNQLKETTEAACKYGA
Sbjct: 121 LWMRVWSR------------AAEKAGMSTGQARGLLERVSTPEVKNQLKETTEAACKYGA 168
Query: 696 FGLPITVAHLDDKTHMLFGSDRMELLAHLLGEKWMGPVPPAVNARL 833
FGLPITVAHLDDKTHMLFGSDRMELLAHLLGEKWMGPVPPAVNARL
Sbjct: 169 FGLPITVAHLDDKTHMLFGSDRMELLAHLLGEKWMGPVPPAVNARL 214
>ref|XP_003134622.1| PREDICTED: glutathione S-transferase kappa 1-like isoform 2 [Sus
scrofa].
Length = 232
Score = 428 bits (1100), Expect = e-120
Identities = 210/210 (100%), Positives = 210/210 (100%)
Frame = +3
Query: 156 MGPLPRTVELFYDVLSPYSWLAFEILCRYKNIWNVNLQLCPSLIAGILKDSGNQPPAMLP 335
MGPLPRTVELFYDVLSPYSWLAFEILCRYKNIWNVNLQLCPSLIAGILKDSGNQPPAMLP
Sbjct: 1 MGPLPRTVELFYDVLSPYSWLAFEILCRYKNIWNVNLQLCPSLIAGILKDSGNQPPAMLP 60
Query: 336 RKAVYMKEDIKRLGHHLQVPIHFPKDFFSTILGKGSLTAMRFLTTVKLEHPEMLEKVSRE 515
RKAVYMKEDIKRLGHHLQVPIHFPKDFFSTILGKGSLTAMRFLTTVKLEHPEMLEKVSRE
Sbjct: 61 RKAVYMKEDIKRLGHHLQVPIHFPKDFFSTILGKGSLTAMRFLTTVKLEHPEMLEKVSRE 120
Query: 516 LWMRVWSRDEDITEPQSVLAAAEKAGMSTGQARGLLERVSTPEVKNQLKETTEAACKYGA 695
LWMRVWSRDEDITEPQSVLAAAEKAGMSTGQARGLLERVSTPEVKNQLKETTEAACKYGA
Sbjct: 121 LWMRVWSRDEDITEPQSVLAAAEKAGMSTGQARGLLERVSTPEVKNQLKETTEAACKYGA 180
Query: 696 FGLPITVAHLDDKTHMLFGSDRMELLAHLL 785
FGLPITVAHLDDKTHMLFGSDRMELLAHLL
Sbjct: 181 FGLPITVAHLDDKTHMLFGSDRMELLAHLL 210
>ref|XP_003134624.1| PREDICTED: glutathione S-transferase kappa 1-like isoform 4 [Sus
scrofa].
Length = 183
Score = 352 bits (903), Expect = 2e-97
Identities = 183/226 (80%), Positives = 183/226 (80%)
Frame = +3
Query: 156 MGPLPRTVELFYDVLSPYSWLAFEILCRYKNIWNVNLQLCPSLIAGILKDSGNQPPAMLP 335
MGPLPRTVELFYDVLSPYSWLAFEILCRYKNIWNVNLQLCPSLIAGILKDSG
Sbjct: 1 MGPLPRTVELFYDVLSPYSWLAFEILCRYKNIWNVNLQLCPSLIAGILKDSG-------- 52
Query: 336 RKAVYMKEDIKRLGHHLQVPIHFPKDFFSTILGKGSLTAMRFLTTVKLEHPEMLEKVSRE 515
SLTAMRFLTTVKLEHPEMLEKVSRE
Sbjct: 53 -----------------------------------SLTAMRFLTTVKLEHPEMLEKVSRE 77
Query: 516 LWMRVWSRDEDITEPQSVLAAAEKAGMSTGQARGLLERVSTPEVKNQLKETTEAACKYGA 695
LWMRVWSRDEDITEPQSVLAAAEKAGMSTGQARGLLERVSTPEVKNQLKETTEAACKYGA
Sbjct: 78 LWMRVWSRDEDITEPQSVLAAAEKAGMSTGQARGLLERVSTPEVKNQLKETTEAACKYGA 137
Query: 696 FGLPITVAHLDDKTHMLFGSDRMELLAHLLGEKWMGPVPPAVNARL 833
FGLPITVAHLDDKTHMLFGSDRMELLAHLLGEKWMGPVPPAVNARL
Sbjct: 138 FGLPITVAHLDDKTHMLFGSDRMELLAHLLGEKWMGPVPPAVNARL 183
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 29,341,258
Number of extensions: 980886
Number of successful extensions: 4075
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 4064
Number of HSP's successfully gapped: 5
Length of query: 327
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 228
Effective length of database: 8,879,129
Effective search space: 2024441412
Effective search space used: 2024441412
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002899
(982 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr09 622 e-176
Sscrofa_Chr18 450 e-124
>Sscrofa_Chr09
|| Length = 153670197
Score = 622 bits (314), Expect = e-176
Identities = 680/796 (85%), Gaps = 27/796 (3%)
Strand = Plus / Minus
Query: 178 tggagcttttctacgatgtgctgtccccctactcctggctggccttcgagatcctgtgcc 237
||||||| |||| |||||||||||||||| |||||||||| |||||||| ||||||
Sbjct: 132884746 tggagctcttctgtgatgtgctgtccccctcctcctggctgtccttcgaggctctgtgct 132884687
Query: 238 ggtacaagaacatctggaatgtcaacctgcagctgtgcccaagcttaattgcagggatct 297
||||||||||||||||||| |||| ||| || ||||||| ||||||||||
Sbjct: 132884686 ggtacaagaacatctggaacgtcagcct-------tg----agcttaagtgcagggatca 132884638
Query: 298 taaaagacagcggaaaccagccaccagctatgcttccccgcaaagctgtgtacatgaaag 357
| ||||||||| ||||||||| |||||||||||||||||||||||| ||||| ||||||
Sbjct: 132884637 tgaaagacagcagaaaccagctgccagctatgcttccccgcaaagctctgtacttgaaag 132884578
Query: 358 aggacattaagcgactgggacaccatctccaggttcccatccacttccccaaggatttct 417
|||||||||| ||||||| |||||||||||| || |||||||||| | |||||||
Sbjct: 132884577 gtgacattaagctcctgggactgcatctccaggtttccctccacttcccgagagatttct 132884518
Query: 418 tctctacaatccttggaaaaggaagtttgacagccatgcgcttcctcaccaccgtgaaac 477
||||| | ||||| ||||||||||||||||||||||| ||||||| | | || ||||
Sbjct: 132884517 tctctgtgacccttgaaaaaggaagtttgacagccatgcacttcctcctctcagtaaaac 132884458
Query: 478 tggagcaccccgagatgctggagaaagtgtccagggaactgtggatgcgcgtctggtcac 537
|||||||||| | ||||||||||||||||||| |||||| | |||||| | |||||||||
Sbjct: 132884457 tggagcacccggcgatgctggagaaagtgtccggggaacagaggatgcacatctggtcac 132884398
Query: 538 gggacgaagacatcacagagccccagagcgtcctggccgcggcagagaaggccggcatgt 597
||||||||||||||||||||||||||||| ||||| || | ||||||||||| |||||||
Sbjct: 132884397 gggacgaagacatcacagagccccagagcatcctgtccacagcagagaaggctggcatgt 132884338
Query: 598 ccacaggacaggcccgaggactcctggaaagggtctcaacaccagaggtgaagaaccagc 657
||||||||||||||| |||||| ||||||||||||||||||||| |||||||||||||||
Sbjct: 132884337 ccacaggacaggccc-aggacttctggaaagggtctcaacaccacaggtgaagaaccagc 132884279
Query: 658 tcaaggagaccactgaggcggcctgcaaatatggggcctttgggctgcccatcactgtgg 717
||||||||||||||| ||| ||||||| | ||||| |||||||||||||||| |||||
Sbjct: 132884278 tcaaggagaccactggggcagcctgcagacctggggtctttgggctgcccatccctgtga 132884219
Query: 718 ctcacctggatgacaaaacacacatgctctttggctctgaccggatggagctgctggcac 777
| |||||| |||||| ||| |||||||| | ||||||||||| ||||||| |||||||||
Sbjct: 132884218 cccacctgtatgacagaacccacatgctgtctggctctgacccgatggagttgctggcac 132884159
Query: 778 acctgctgggcgagaagtggatgggccctgtgcctccagctgtaaatgccagacttt--- 834
||||||||| ||||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct: 132884158 acctgctggaagagaagtggat-ggccctgtgcctccatctgtaaatgccagactttaag 132884100
Query: 835 ------aaggaagcaaagctgttggtat-aaacagaagac-catctgcttacccctccag 886
|||||||||||||| ||||||| |||||| |||| |||||||| |||||| ||
Sbjct: 132884099 gagcccaaggaagcaaagctattggtatgaaacagcagacgcatctgctcaccccttcac 132884040
Query: 887 cgc-ggggcctgggactctgctttcctatctgacagagtttcctctgtggccctggggga 945
|| ||| |||||||||||| |||| |||||||| || ||| |||| ||||||||| ||
Sbjct: 132884039 tgcagggccctgggactctggtttcttatctgac--aggttcttctggggccctgggaga 132883982
Query: 946 tgccggggagggggct 961
||| |||||||||||
Sbjct: 132883981 ggccagggagggggct 132883966
>Sscrofa_Chr18
|| Length = 61220071
Score = 450 bits (227), Expect = e-124
Identities = 227/227 (100%)
Strand = Plus / Minus
Query: 1 ccccggggaggccgggaatcggggcggggccgaaggtggggcccgtcctcactctgcgcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7239992 ccccggggaggccgggaatcggggcggggccgaaggtggggcccgtcctcactctgcgcc 7239933
Query: 61 tggagccgcggcctggacgctgcgcgcaggagaaagggaacgatcaacgctcggcttgct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7239932 tggagccgcggcctggacgctgcgcgcaggagaaagggaacgatcaacgctcggcttgct 7239873
Query: 121 gggccgcgcttgcttctcagttgtccggctgcagcatggggcctctcccgcggaccgtgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7239872 gggccgcgcttgcttctcagttgtccggctgcagcatggggcctctcccgcggaccgtgg 7239813
Query: 181 agcttttctacgatgtgctgtccccctactcctggctggccttcgag 227
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7239812 agcttttctacgatgtgctgtccccctactcctggctggccttcgag 7239766
Score = 383 bits (193), Expect = e-103
Identities = 196/197 (99%)
Strand = Plus / Minus
Query: 786 ggcgagaagtggatgggccctgtgcctccagctgtaaatgccagactttaaggaagcaaa 845
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7234685 ggcgagaagtggatgggccctgtgcctccagctgtaaatgccagactttaaggaagcaaa 7234626
Query: 846 gctgttggtataaacagaagaccatctgcttacccctccagcgcggggcctgggactctg 905
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7234625 gctgttggtataaacagaagaccatctgcttacccctccagcgcggggcctgggactctg 7234566
Query: 906 ctttcctatctgacagagtttcctctgtggccctgggggatgccggggagggggctgtgt 965
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7234565 ctttcctatctgacagagtttcctctgtggccctgggggatgccggggagggggctgtgt 7234506
Query: 966 tgtacaccatccaccgt 982
||||||||||||||||
Sbjct: 7234505 ggtacaccatccaccgt 7234489
Score = 260 bits (131), Expect = 1e-66
Identities = 131/131 (100%)
Strand = Plus / Minus
Query: 309 ggaaaccagccaccagctatgcttccccgcaaagctgtgtacatgaaagaggacattaag 368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7238980 ggaaaccagccaccagctatgcttccccgcaaagctgtgtacatgaaagaggacattaag 7238921
Query: 369 cgactgggacaccatctccaggttcccatccacttccccaaggatttcttctctacaatc 428
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7238920 cgactgggacaccatctccaggttcccatccacttccccaaggatttcttctctacaatc 7238861
Query: 429 cttggaaaagg 439
|||||||||||
Sbjct: 7238860 cttggaaaagg 7238850
Score = 234 bits (118), Expect = 7e-59
Identities = 118/118 (100%)
Strand = Plus / Minus
Query: 576 gcggcagagaaggccggcatgtccacaggacaggcccgaggactcctggaaagggtctca 635
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7235921 gcggcagagaaggccggcatgtccacaggacaggcccgaggactcctggaaagggtctca 7235862
Query: 636 acaccagaggtgaagaaccagctcaaggagaccactgaggcggcctgcaaatatgggg 693
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7235861 acaccagaggtgaagaaccagctcaaggagaccactgaggcggcctgcaaatatgggg 7235804
Score = 206 bits (104), Expect = 2e-50
Identities = 104/104 (100%)
Strand = Plus / Minus
Query: 437 aggaagtttgacagccatgcgcttcctcaccaccgtgaaactggagcaccccgagatgct 496
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7238548 aggaagtttgacagccatgcgcttcctcaccaccgtgaaactggagcaccccgagatgct 7238489
Query: 497 ggagaaagtgtccagggaactgtggatgcgcgtctggtcacggg 540
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7238488 ggagaaagtgtccagggaactgtggatgcgcgtctggtcacggg 7238445
Score = 190 bits (96), Expect = 1e-45
Identities = 96/96 (100%)
Strand = Plus / Minus
Query: 692 ggcctttgggctgcccatcactgtggctcacctggatgacaaaacacacatgctctttgg 751
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7235165 ggcctttgggctgcccatcactgtggctcacctggatgacaaaacacacatgctctttgg 7235106
Query: 752 ctctgaccggatggagctgctggcacacctgctggg 787
||||||||||||||||||||||||||||||||||||
Sbjct: 7235105 ctctgaccggatggagctgctggcacacctgctggg 7235070
Score = 168 bits (85), Expect = 4e-39
Identities = 85/85 (100%)
Strand = Plus / Minus
Query: 226 agatcctgtgccggtacaagaacatctggaatgtcaacctgcagctgtgcccaagcttaa 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7239251 agatcctgtgccggtacaagaacatctggaatgtcaacctgcagctgtgcccaagcttaa 7239192
Query: 286 ttgcagggatcttaaaagacagcgg 310
|||||||||||||||||||||||||
Sbjct: 7239191 ttgcagggatcttaaaagacagcgg 7239167
Score = 75.8 bits (38), Expect = 4e-11
Identities = 38/38 (100%)
Strand = Plus / Minus
Query: 539 ggacgaagacatcacagagccccagagcgtcctggccg 576
||||||||||||||||||||||||||||||||||||||
Sbjct: 7238165 ggacgaagacatcacagagccccagagcgtcctggccg 7238128
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 28,313,444
Number of extensions: 140
Number of successful extensions: 140
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 137
Number of HSP's successfully gapped: 11
Length of query: 982
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 961
Effective length of database: 2,808,413,156
Effective search space: 2698885042916
Effective search space used: 2698885042916
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)