Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002905
(1061 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001069290.1| electron transfer flavoprotein subunit alpha... 504 e-143
>ref|NP_001069290.1| electron transfer flavoprotein subunit alpha, mitochondrial precursor
[Bos taurus].
Length = 333
Score = 504 bits (1297), Expect = e-143
Identities = 264/309 (85%), Positives = 273/309 (88%), Gaps = 1/309 (0%)
Frame = +1
Query: 124 MFRAVAPVHLRRAASSLRFQSTLVIAEHANDTLAPITLNTITAAKRLGGEVSCLVAGTKC 303
MFRA AP LRRA S LRFQSTLVIAEHANDTLAPITLNTITAAK LGGEVSCLVAGTKC
Sbjct: 1 MFRAAAPGQLRRATSLLRFQSTLVIAEHANDTLAPITLNTITAAKHLGGEVSCLVAGTKC 60
Query: 304 DKVAQDLCKVAGVAKVLVAQHDAYKGLLPEELTPLVLATQKQFNYTHICAGASAFGKNLL 483
DKVAQDLCKVAGVAKVLVAQHDAYKGLLPEELTPL+LATQKQFN+THICAGASAFGKNLL
Sbjct: 61 DKVAQDLCKVAGVAKVLVAQHDAYKGLLPEELTPLILATQKQFNHTHICAGASAFGKNLL 120
Query: 484 PRIAAKLDVAPISDIIAIKSPDTFVRPIYAGNALCTVKCDEKVKVFSVRGTSFEAAATSG 663
PRIAAKLDVAPISDIIAIKSPDTFVR IYAGNA+CTVKCDEKVKVFSVRGTSFEAAA SG
Sbjct: 121 PRIAAKLDVAPISDIIAIKSPDTFVRTIYAGNAICTVKCDEKVKVFSVRGTSFEAAAASG 180
Query: 664 GSAISEKASSASPVGISEWLDQKLTKSDRPELTGAKVVVSGGRGLKSGENFKLLYDLADQ 843
GSA SEKASS SPVGISEWLDQKLTKSDRPELTGAKVVVSGGRGLKSGENFKLLYDLADQ
Sbjct: 181 GSASSEKASSTSPVGISEWLDQKLTKSDRPELTGAKVVVSGGRGLKSGENFKLLYDLADQ 240
Query: 844 LHXXXXXXXXXXXXXFVPNDMQVGQTGKIVAPELYIAVGISGAIQHLLG*KTVRQLWLLT 1023
LH FV ND+QVGQTGKIVAPELYIAVGISGAIQHL G K + + +
Sbjct: 241 LHAAVGASRAAVDAGFVTNDLQVGQTGKIVAPELYIAVGISGAIQHLAGMKDSKTIVAIN 300
Query: 1024 RS-RSSIFQ 1047
+ + IFQ
Sbjct: 301 KDPEAPIFQ 309
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 38,088,451
Number of extensions: 974005
Number of successful extensions: 2745
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2742
Number of HSP's successfully gapped: 1
Length of query: 353
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 250
Effective length of database: 14,273,310
Effective search space: 3568327500
Effective search space used: 3568327500
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002905
(1061 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_853387.1| PREDICTED: similar to Electron transfer flavopr... 501 e-142
Alignment gi|XP_867278.1| PREDICTED: similar to Electron transfer flavopr... 457 e-129
Alignment gi|XP_867265.1| PREDICTED: similar to Electron transfer flavopr... 59 6e-09
>ref|XP_853387.1| PREDICTED: similar to Electron transfer flavoprotein alpha-subunit,
mitochondrial precursor (Alpha-ETF) isoform 1 [Canis
familiaris].
Length = 333
Score = 501 bits (1291), Expect = e-142
Identities = 263/309 (85%), Positives = 272/309 (88%), Gaps = 1/309 (0%)
Frame = +1
Query: 124 MFRAVAPVHLRRAASSLRFQSTLVIAEHANDTLAPITLNTITAAKRLGGEVSCLVAGTKC 303
MFRA A LRRAAS LRFQSTLVIAEHANDTLAPITLNTITAAK LGGEVSCLVAGTKC
Sbjct: 1 MFRAAATARLRRAASLLRFQSTLVIAEHANDTLAPITLNTITAAKHLGGEVSCLVAGTKC 60
Query: 304 DKVAQDLCKVAGVAKVLVAQHDAYKGLLPEELTPLVLATQKQFNYTHICAGASAFGKNLL 483
DKVAQDLCKVAGVAKVLVAQHD YKGLLPEELTPL+LATQKQF+YTHICAGASAFGKNLL
Sbjct: 61 DKVAQDLCKVAGVAKVLVAQHDTYKGLLPEELTPLILATQKQFSYTHICAGASAFGKNLL 120
Query: 484 PRIAAKLDVAPISDIIAIKSPDTFVRPIYAGNALCTVKCDEKVKVFSVRGTSFEAAATSG 663
PRIAAKLDVAPISDIIAIKSPDTFVR IYAGNA+CTVKCDE VKVFSVRGTSFEAAATSG
Sbjct: 121 PRIAAKLDVAPISDIIAIKSPDTFVRTIYAGNAICTVKCDETVKVFSVRGTSFEAAATSG 180
Query: 664 GSAISEKASSASPVGISEWLDQKLTKSDRPELTGAKVVVSGGRGLKSGENFKLLYDLADQ 843
GSA SEKASS S VGI+EWLDQKLTKSDRPELTGAKVVVSGGRGLKSGENFKLLYDLADQ
Sbjct: 181 GSASSEKASSTSSVGIAEWLDQKLTKSDRPELTGAKVVVSGGRGLKSGENFKLLYDLADQ 240
Query: 844 LHXXXXXXXXXXXXXFVPNDMQVGQTGKIVAPELYIAVGISGAIQHLLG*KTVRQLWLLT 1023
LH FVPNDMQVGQTGKIVAPELYIAVGISGAIQHL G K + + +
Sbjct: 241 LHAAVGASRAAVDAGFVPNDMQVGQTGKIVAPELYIAVGISGAIQHLAGMKDSKTIVAIN 300
Query: 1024 RS-RSSIFQ 1047
+ + IFQ
Sbjct: 301 KDPEAPIFQ 309
>ref|XP_867278.1| PREDICTED: similar to Electron transfer flavoprotein alpha-subunit,
mitochondrial precursor (Alpha-ETF) isoform 3 [Canis
familiaris].
Length = 315
Score = 457 bits (1176), Expect = e-129
Identities = 246/309 (79%), Positives = 255/309 (82%), Gaps = 1/309 (0%)
Frame = +1
Query: 124 MFRAVAPVHLRRAASSLRFQSTLVIAEHANDTLAPITLNTITAAKRLGGEVSCLVAGTKC 303
MFRA A LRRAAS LRFQSTLVIAEHANDTLAPITLNTITAAK LGGEVSCLVAGTKC
Sbjct: 1 MFRAAATARLRRAASLLRFQSTLVIAEHANDTLAPITLNTITAAKHLGGEVSCLVAGTKC 60
Query: 304 DKVAQDLCKVAGVAKVLVAQHDAYKGLLPEELTPLVLATQKQFNYTHICAGASAFGKNLL 483
DKVAQDLCKVAG ELTPL+LATQKQF+YTHICAGASAFGKNLL
Sbjct: 61 DKVAQDLCKVAG------------------ELTPLILATQKQFSYTHICAGASAFGKNLL 102
Query: 484 PRIAAKLDVAPISDIIAIKSPDTFVRPIYAGNALCTVKCDEKVKVFSVRGTSFEAAATSG 663
PRIAAKLDVAPISDIIAIKSPDTFVR IYAGNA+CTVKCDE VKVFSVRGTSFEAAATSG
Sbjct: 103 PRIAAKLDVAPISDIIAIKSPDTFVRTIYAGNAICTVKCDETVKVFSVRGTSFEAAATSG 162
Query: 664 GSAISEKASSASPVGISEWLDQKLTKSDRPELTGAKVVVSGGRGLKSGENFKLLYDLADQ 843
GSA SEKASS S VGI+EWLDQKLTKSDRPELTGAKVVVSGGRGLKSGENFKLLYDLADQ
Sbjct: 163 GSASSEKASSTSSVGIAEWLDQKLTKSDRPELTGAKVVVSGGRGLKSGENFKLLYDLADQ 222
Query: 844 LHXXXXXXXXXXXXXFVPNDMQVGQTGKIVAPELYIAVGISGAIQHLLG*KTVRQLWLLT 1023
LH FVPNDMQVGQTGKIVAPELYIAVGISGAIQHL G K + + +
Sbjct: 223 LHAAVGASRAAVDAGFVPNDMQVGQTGKIVAPELYIAVGISGAIQHLAGMKDSKTIVAIN 282
Query: 1024 RS-RSSIFQ 1047
+ + IFQ
Sbjct: 283 KDPEAPIFQ 291
>ref|XP_867265.1| PREDICTED: similar to Electron transfer flavoprotein alpha-subunit,
mitochondrial precursor (Alpha-ETF) isoform 2 [Canis
familiaris].
Length = 73
Score = 59.3 bits (142), Expect = 6e-09
Identities = 32/49 (65%), Positives = 37/49 (75%), Gaps = 1/49 (2%)
Frame = +1
Query: 904 MQVGQTGKIVAPELYIAVGISGAIQHLLG*KTVRQLWLLTRS-RSSIFQ 1047
MQVGQTGKIVAPELYIAVGISGAIQHL G K + + + + + IFQ
Sbjct: 1 MQVGQTGKIVAPELYIAVGISGAIQHLAGMKDSKTIVAINKDPEAPIFQ 49
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 39,583,517
Number of extensions: 990308
Number of successful extensions: 2789
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2784
Number of HSP's successfully gapped: 3
Length of query: 353
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 249
Effective length of database: 15,407,560
Effective search space: 3836482440
Effective search space used: 3836482440
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002905
(1061 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_000117.1| electron transfer flavoprotein subunit alpha, m... 504 e-143
Alignment gi|NP_001121188.1| electron transfer flavoprotein subunit alpha... 399 e-111
>ref|NP_000117.1| electron transfer flavoprotein subunit alpha, mitochondrial isoform a
[Homo sapiens].
Length = 333
Score = 504 bits (1298), Expect = e-143
Identities = 263/309 (85%), Positives = 274/309 (88%), Gaps = 1/309 (0%)
Frame = +1
Query: 124 MFRAVAPVHLRRAASSLRFQSTLVIAEHANDTLAPITLNTITAAKRLGGEVSCLVAGTKC 303
MFRA AP LRRAAS LRFQSTLVIAEHAND+LAPITLNTITAA RLGGEVSCLVAGTKC
Sbjct: 1 MFRAAAPGQLRRAASLLRFQSTLVIAEHANDSLAPITLNTITAATRLGGEVSCLVAGTKC 60
Query: 304 DKVAQDLCKVAGVAKVLVAQHDAYKGLLPEELTPLVLATQKQFNYTHICAGASAFGKNLL 483
DKVAQDLCKVAG+AKVLVAQHD YKGLLPEELTPL+LATQKQFNYTHICAGASAFGKNLL
Sbjct: 61 DKVAQDLCKVAGIAKVLVAQHDVYKGLLPEELTPLILATQKQFNYTHICAGASAFGKNLL 120
Query: 484 PRIAAKLDVAPISDIIAIKSPDTFVRPIYAGNALCTVKCDEKVKVFSVRGTSFEAAATSG 663
PR+AAKL+VAPISDIIAIKSPDTFVR IYAGNALCTVKCDEKVKVFSVRGTSF+AAATSG
Sbjct: 121 PRVAAKLEVAPISDIIAIKSPDTFVRTIYAGNALCTVKCDEKVKVFSVRGTSFDAAATSG 180
Query: 664 GSAISEKASSASPVGISEWLDQKLTKSDRPELTGAKVVVSGGRGLKSGENFKLLYDLADQ 843
GSA SEKASS SPV ISEWLDQKLTKSDRPELTGAKVVVSGGRGLKSGENFKLLYDLADQ
Sbjct: 181 GSASSEKASSTSPVEISEWLDQKLTKSDRPELTGAKVVVSGGRGLKSGENFKLLYDLADQ 240
Query: 844 LHXXXXXXXXXXXXXFVPNDMQVGQTGKIVAPELYIAVGISGAIQHLLG*KTVRQLWLLT 1023
LH FVPNDMQVGQTGKIVAPELYIAVGISGAIQHL G K + + +
Sbjct: 241 LHAAVGASRAAVDAGFVPNDMQVGQTGKIVAPELYIAVGISGAIQHLAGMKDSKTIVAIN 300
Query: 1024 RS-RSSIFQ 1047
+ + IFQ
Sbjct: 301 KDPEAPIFQ 309
>ref|NP_001121188.1| electron transfer flavoprotein subunit alpha, mitochondrial isoform b
[Homo sapiens].
Length = 284
Score = 399 bits (1025), Expect = e-111
Identities = 207/247 (83%), Positives = 217/247 (87%), Gaps = 1/247 (0%)
Frame = +1
Query: 310 VAQDLCKVAGVAKVLVAQHDAYKGLLPEELTPLVLATQKQFNYTHICAGASAFGKNLLPR 489
VAQDLCKVAG+AKVLVAQHD YKGLLPEELTPL+LATQKQFNYTHICAGASAFGKNLLPR
Sbjct: 14 VAQDLCKVAGIAKVLVAQHDVYKGLLPEELTPLILATQKQFNYTHICAGASAFGKNLLPR 73
Query: 490 IAAKLDVAPISDIIAIKSPDTFVRPIYAGNALCTVKCDEKVKVFSVRGTSFEAAATSGGS 669
+AAKL+VAPISDIIAIKSPDTFVR IYAGNALCTVKCDEKVKVFSVRGTSF+AAATSGGS
Sbjct: 74 VAAKLEVAPISDIIAIKSPDTFVRTIYAGNALCTVKCDEKVKVFSVRGTSFDAAATSGGS 133
Query: 670 AISEKASSASPVGISEWLDQKLTKSDRPELTGAKVVVSGGRGLKSGENFKLLYDLADQLH 849
A SEKASS SPV ISEWLDQKLTKSDRPELTGAKVVVSGGRGLKSGENFKLLYDLADQLH
Sbjct: 134 ASSEKASSTSPVEISEWLDQKLTKSDRPELTGAKVVVSGGRGLKSGENFKLLYDLADQLH 193
Query: 850 XXXXXXXXXXXXXFVPNDMQVGQTGKIVAPELYIAVGISGAIQHLLG*KTVRQLWLLTRS 1029
FVPNDMQVGQTGKIVAPELYIAVGISGAIQHL G K + + + +
Sbjct: 194 AAVGASRAAVDAGFVPNDMQVGQTGKIVAPELYIAVGISGAIQHLAGMKDSKTIVAINKD 253
Query: 1030 -RSSIFQ 1047
+ IFQ
Sbjct: 254 PEAPIFQ 260
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 39,141,495
Number of extensions: 998618
Number of successful extensions: 2958
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2953
Number of HSP's successfully gapped: 2
Length of query: 353
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 249
Effective length of database: 14,868,908
Effective search space: 3702358092
Effective search space used: 3702358092
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002905
(1061 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_663590.3| electron transfer flavoprotein subunit alpha, m... 497 e-141
>ref|NP_663590.3| electron transfer flavoprotein subunit alpha, mitochondrial precursor
[Mus musculus].
Length = 333
Score = 497 bits (1280), Expect = e-141
Identities = 260/309 (84%), Positives = 272/309 (88%), Gaps = 1/309 (0%)
Frame = +1
Query: 124 MFRAVAPVHLRRAASSLRFQSTLVIAEHANDTLAPITLNTITAAKRLGGEVSCLVAGTKC 303
MFRA AP LRRAAS LRFQSTLVIAEHAND+LAPITLNTITAA RLGGEVSCLVAGTKC
Sbjct: 1 MFRAAAPGQLRRAASLLRFQSTLVIAEHANDSLAPITLNTITAAGRLGGEVSCLVAGTKC 60
Query: 304 DKVAQDLCKVAGVAKVLVAQHDAYKGLLPEELTPLVLATQKQFNYTHICAGASAFGKNLL 483
DKV QDLCKVAGVAKVLVAQHDAYKGLLPEELTPL+L TQKQF+YTHICAGASAFGKNLL
Sbjct: 61 DKVVQDLCKVAGVAKVLVAQHDAYKGLLPEELTPLILETQKQFSYTHICAGASAFGKNLL 120
Query: 484 PRIAAKLDVAPISDIIAIKSPDTFVRPIYAGNALCTVKCDEKVKVFSVRGTSFEAAATSG 663
PR+AAKL+VAP+SDII IKSPDTFVR IYAGNALCTVKCDEKVKVFSVRGTSFEAAATSG
Sbjct: 121 PRVAAKLNVAPVSDIIEIKSPDTFVRTIYAGNALCTVKCDEKVKVFSVRGTSFEAAATSG 180
Query: 664 GSAISEKASSASPVGISEWLDQKLTKSDRPELTGAKVVVSGGRGLKSGENFKLLYDLADQ 843
GSA SEKA S+S VGISEWLDQKLTKSDRPELTGAKVVVSGGRGLKSGENFKLLYDLADQ
Sbjct: 181 GSASSEKAPSSSSVGISEWLDQKLTKSDRPELTGAKVVVSGGRGLKSGENFKLLYDLADQ 240
Query: 844 LHXXXXXXXXXXXXXFVPNDMQVGQTGKIVAPELYIAVGISGAIQHLLG*KTVRQLWLLT 1023
LH FVPNDMQVGQTGKIVAPELYIAVGISGAIQHL G K + + +
Sbjct: 241 LHAAVGASRAAVDAGFVPNDMQVGQTGKIVAPELYIAVGISGAIQHLAGMKDSKTIVAIN 300
Query: 1024 RS-RSSIFQ 1047
+ + IFQ
Sbjct: 301 KDPEAPIFQ 309
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 33,514,787
Number of extensions: 856873
Number of successful extensions: 2473
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2469
Number of HSP's successfully gapped: 1
Length of query: 353
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 251
Effective length of database: 12,553,887
Effective search space: 3151025637
Effective search space used: 3151025637
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002905
(1061 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003356717.1| PREDICTED: electron transfer flavoprotein su... 533 e-152
Alignment gi|XP_001928767.1| PREDICTED: electron transfer flavoprotein su... 533 e-152
>ref|XP_003356717.1| PREDICTED: electron transfer flavoprotein subunit alpha,
mitochondrial [Sus scrofa].
Length = 333
Score = 533 bits (1373), Expect = e-152
Identities = 279/309 (90%), Positives = 284/309 (91%), Gaps = 1/309 (0%)
Frame = +1
Query: 124 MFRAVAPVHLRRAASSLRFQSTLVIAEHANDTLAPITLNTITAAKRLGGEVSCLVAGTKC 303
MFRAVAPVHLRRAASSLRFQSTLVIAEHANDTLAPITLNTITAAKRLGGEVSCLVAGTKC
Sbjct: 1 MFRAVAPVHLRRAASSLRFQSTLVIAEHANDTLAPITLNTITAAKRLGGEVSCLVAGTKC 60
Query: 304 DKVAQDLCKVAGVAKVLVAQHDAYKGLLPEELTPLVLATQKQFNYTHICAGASAFGKNLL 483
DKVAQDLCKVAGVAKVLVAQHDAYKGLLPEELTPLVLATQKQFNYTHICAGASAFGKNLL
Sbjct: 61 DKVAQDLCKVAGVAKVLVAQHDAYKGLLPEELTPLVLATQKQFNYTHICAGASAFGKNLL 120
Query: 484 PRIAAKLDVAPISDIIAIKSPDTFVRPIYAGNALCTVKCDEKVKVFSVRGTSFEAAATSG 663
PRIAAKLDVAPISDIIAIKSPDTFVRPIYAGNALCTVKCDEKVKVFSVRGTSFEAAATSG
Sbjct: 121 PRIAAKLDVAPISDIIAIKSPDTFVRPIYAGNALCTVKCDEKVKVFSVRGTSFEAAATSG 180
Query: 664 GSAISEKASSASPVGISEWLDQKLTKSDRPELTGAKVVVSGGRGLKSGENFKLLYDLADQ 843
GSAISEKASSASPVGISEWLDQKLTKSDRPELTGAKVVVSGGRGLKSGENFKLLYDLADQ
Sbjct: 181 GSAISEKASSASPVGISEWLDQKLTKSDRPELTGAKVVVSGGRGLKSGENFKLLYDLADQ 240
Query: 844 LHXXXXXXXXXXXXXFVPNDMQVGQTGKIVAPELYIAVGISGAIQHLLG*KTVRQLWLLT 1023
LH FVPNDMQVGQTGKIVAPELYIAVGISGAIQHL G K + + +
Sbjct: 241 LHAAVGASRAAVDAGFVPNDMQVGQTGKIVAPELYIAVGISGAIQHLAGMKDSKTIVAIN 300
Query: 1024 RS-RSSIFQ 1047
+ + IFQ
Sbjct: 301 KDPEAPIFQ 309
>ref|XP_001928767.1| PREDICTED: electron transfer flavoprotein subunit alpha,
mitochondrial isoform 1 [Sus scrofa].
Length = 333
Score = 533 bits (1373), Expect = e-152
Identities = 279/309 (90%), Positives = 284/309 (91%), Gaps = 1/309 (0%)
Frame = +1
Query: 124 MFRAVAPVHLRRAASSLRFQSTLVIAEHANDTLAPITLNTITAAKRLGGEVSCLVAGTKC 303
MFRAVAPVHLRRAASSLRFQSTLVIAEHANDTLAPITLNTITAAKRLGGEVSCLVAGTKC
Sbjct: 1 MFRAVAPVHLRRAASSLRFQSTLVIAEHANDTLAPITLNTITAAKRLGGEVSCLVAGTKC 60
Query: 304 DKVAQDLCKVAGVAKVLVAQHDAYKGLLPEELTPLVLATQKQFNYTHICAGASAFGKNLL 483
DKVAQDLCKVAGVAKVLVAQHDAYKGLLPEELTPLVLATQKQFNYTHICAGASAFGKNLL
Sbjct: 61 DKVAQDLCKVAGVAKVLVAQHDAYKGLLPEELTPLVLATQKQFNYTHICAGASAFGKNLL 120
Query: 484 PRIAAKLDVAPISDIIAIKSPDTFVRPIYAGNALCTVKCDEKVKVFSVRGTSFEAAATSG 663
PRIAAKLDVAPISDIIAIKSPDTFVRPIYAGNALCTVKCDEKVKVFSVRGTSFEAAATSG
Sbjct: 121 PRIAAKLDVAPISDIIAIKSPDTFVRPIYAGNALCTVKCDEKVKVFSVRGTSFEAAATSG 180
Query: 664 GSAISEKASSASPVGISEWLDQKLTKSDRPELTGAKVVVSGGRGLKSGENFKLLYDLADQ 843
GSAISEKASSASPVGISEWLDQKLTKSDRPELTGAKVVVSGGRGLKSGENFKLLYDLADQ
Sbjct: 181 GSAISEKASSASPVGISEWLDQKLTKSDRPELTGAKVVVSGGRGLKSGENFKLLYDLADQ 240
Query: 844 LHXXXXXXXXXXXXXFVPNDMQVGQTGKIVAPELYIAVGISGAIQHLLG*KTVRQLWLLT 1023
LH FVPNDMQVGQTGKIVAPELYIAVGISGAIQHL G K + + +
Sbjct: 241 LHAAVGASRAAVDAGFVPNDMQVGQTGKIVAPELYIAVGISGAIQHLAGMKDSKTIVAIN 300
Query: 1024 RS-RSSIFQ 1047
+ + IFQ
Sbjct: 301 KDPEAPIFQ 309
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 24,450,012
Number of extensions: 620142
Number of successful extensions: 1784
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1780
Number of HSP's successfully gapped: 2
Length of query: 353
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 253
Effective length of database: 8,854,232
Effective search space: 2240120696
Effective search space used: 2240120696
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002905
(1061 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr07 323 1e-85
>Sscrofa_Chr07
|| Length = 134764511
Score = 323 bits (163), Expect = 1e-85
Identities = 163/163 (100%)
Strand = Plus / Plus
Query: 1 gggagtccgctctcgttcccgcgtctcgcgagcgtttcggtgactcgcggaggcggtgtg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60946251 gggagtccgctctcgttcccgcgtctcgcgagcgtttcggtgactcgcggaggcggtgtg 60946310
Query: 61 gttgggtcagctgcaggctactgtggggctgagggtactgcgaagcggcctggtgcagtg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60946311 gttgggtcagctgcaggctactgtggggctgagggtactgcgaagcggcctggtgcagtg 60946370
Query: 121 accatgttccgagcagtggctccggtgcatctccggcgggcgg 163
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60946371 accatgttccgagcagtggctccggtgcatctccggcgggcgg 60946413
Score = 299 bits (151), Expect = 2e-78
Identities = 151/151 (100%)
Strand = Plus / Plus
Query: 162 ggcctcatcgctacgatttcagagtaccctggtaatagctgagcatgcaaatgataccct 221
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60959605 ggcctcatcgctacgatttcagagtaccctggtaatagctgagcatgcaaatgataccct 60959664
Query: 222 agcacccattacattaaataccatcactgcagccaaacgtcttggaggtgaagtgtcctg 281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60959665 agcacccattacattaaataccatcactgcagccaaacgtcttggaggtgaagtgtcctg 60959724
Query: 282 cttagtagctggaaccaaatgtgacaaggtg 312
|||||||||||||||||||||||||||||||
Sbjct: 60959725 cttagtagctggaaccaaatgtgacaaggtg 60959755
Score = 224 bits (113), Expect = 8e-56
Identities = 113/113 (100%)
Strand = Plus / Plus
Query: 573 aggaaatgctttatgtacagtgaagtgtgatgagaaagtgaaggtgttttctgtccgagg 632
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60968352 aggaaatgctttatgtacagtgaagtgtgatgagaaagtgaaggtgttttctgtccgagg 60968411
Query: 633 aacatcttttgaagctgcagcaacaagtggaggtagtgccatttcagaaaagg 685
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60968412 aacatcttttgaagctgcagcaacaagtggaggtagtgccatttcagaaaagg 60968464
Score = 208 bits (105), Expect = 5e-51
Identities = 105/105 (100%)
Strand = Plus / Plus
Query: 685 gcatcaagtgcgtccccagtggggatatcagaatggcttgaccagaaattaacaaaaagt 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60969384 gcatcaagtgcgtccccagtggggatatcagaatggcttgaccagaaattaacaaaaagt 60969443
Query: 745 gatcgaccagagctgacaggtgccaaagtggtagtttctggtggt 789
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60969444 gatcgaccagagctgacaggtgccaaagtggtagtttctggtggt 60969488
Score = 204 bits (103), Expect = 7e-50
Identities = 103/103 (100%)
Strand = Plus / Plus
Query: 473 agaaccttttgccccgaatagcagccaaactcgatgttgcccctatttctgacatcattg 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60967184 agaaccttttgccccgaatagcagccaaactcgatgttgcccctatttctgacatcattg 60967243
Query: 533 caatcaaatcacctgacacatttgtgagacctatttatgcagg 575
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60967244 caatcaaatcacctgacacatttgtgagacctatttatgcagg 60967286
Score = 170 bits (86), Expect = 1e-39
Identities = 86/86 (100%)
Strand = Plus / Plus
Query: 389 cagaggaactgacaccattggttttggcaactcagaagcagtttaattatacacacatct 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60962358 cagaggaactgacaccattggttttggcaactcagaagcagtttaattatacacacatct 60962417
Query: 449 gtgctggagcatctgcctttggaaag 474
||||||||||||||||||||||||||
Sbjct: 60962418 gtgctggagcatctgcctttggaaag 60962443
Score = 170 bits (86), Expect = 1e-39
Identities = 86/86 (100%)
Strand = Plus / Plus
Query: 855 agttggtgcttctcgtgcagctgttgatgctggctttgttcccaatgacatgcaagttgg 914
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60977263 agttggtgcttctcgtgcagctgttgatgctggctttgttcccaatgacatgcaagttgg 60977322
Query: 915 acagacaggaaaaatagtagcacctg 940
||||||||||||||||||||||||||
Sbjct: 60977323 acagacaggaaaaatagtagcacctg 60977348
Score = 167 bits (84), Expect = 2e-38
Identities = 84/84 (100%)
Strand = Plus / Plus
Query: 308 aggtggcacaagatctctgcaaagtagcaggtgtagcgaaagttctggtggctcagcatg 367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60962169 aggtggcacaagatctctgcaaagtagcaggtgtagcgaaagttctggtggctcagcatg 60962228
Query: 368 atgcatacaaaggcctccttccag 391
||||||||||||||||||||||||
Sbjct: 60962229 atgcatacaaaggcctccttccag 60962252
Score = 139 bits (70), Expect = 4e-30
Identities = 70/70 (100%)
Strand = Plus / Plus
Query: 787 ggtcggggtttgaagagtggagagaactttaagttgttgtacgatttggcagatcaacta 846
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60970612 ggtcggggtttgaagagtggagagaactttaagttgttgtacgatttggcagatcaacta 60970671
Query: 847 catgctgcag 856
||||||||||
Sbjct: 60970672 catgctgcag 60970681
Score = 115 bits (58), Expect = 5e-23
Identities = 65/66 (98%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 940 gaactttatattgctgtaggaatatctggagccatccaacattt-gctgggatgaaagac 998
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 61015704 gaactttatattgctgtaggaatatctggagccatccaacatttagctgggatgaaagac 61015763
Query: 999 agtaag 1004
||||||
Sbjct: 61015764 agtaag 61015769
Score = 75.8 bits (38), Expect = 4e-11
Identities = 59/62 (95%), Gaps = 3/62 (4%)
Strand = Plus / Plus
Query: 1003 agacaattgtggctattaac-aagatccagaagct-caatttttc-agtggcagattatg 1059
|||||||||||||||||||| |||||||||||||| ||||||||| ||||||||||||||
Sbjct: 61023724 agacaattgtggctattaacaaagatccagaagctccaatttttcaagtggcagattatg 61023783
Query: 1060 ga 1061
||
Sbjct: 61023784 ga 61023785
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 31,090,112
Number of extensions: 150
Number of successful extensions: 150
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 149
Number of HSP's successfully gapped: 11
Length of query: 1061
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1040
Effective length of database: 2,808,413,156
Effective search space: 2920749682240
Effective search space used: 2920749682240
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)