Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002956
(1522 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001069318.2| WD repeat domain 13 protein [Bos taurus]. 766 0.0
Alignment gi|NP_001098945.1| WD repeat-containing protein 5 [Bos taurus]. 60 4e-09
Alignment gi|XP_001788325.2| PREDICTED: WD repeat domain 5 [Bos taurus]. 60 7e-09
Alignment gi|XP_002685394.1| PREDICTED: WD repeat, sterile alpha motif an... 50 7e-06
Alignment gi|XP_001252275.1| PREDICTED: WD repeat, sterile alpha motif an... 50 7e-06
>ref|NP_001069318.2| WD repeat domain 13 protein [Bos taurus].
Length = 485
Score = 766 bits (1979), Expect = 0.0
Identities = 386/432 (89%), Positives = 387/432 (89%)
Frame = +2
Query: 227 VWQQVLAVDARYNAYRTPTFPQFRTQYIRRRSQLLRENAKAGHPPAXXXXXXXXXXXXXX 406
VWQQVLAVDARYNAYRTPTFPQFRTQYIRRRSQLLRENAKAGHPPA
Sbjct: 4 VWQQVLAVDARYNAYRTPTFPQFRTQYIRRRSQLLRENAKAGHPPALRRQYLRLRGQLLG 63
Query: 407 XXXXPLSEPGSARAYSNSIVRSSRTTLDRMEDFEDDPRALGARGHRRSVSRGSYQLQAQM 586
PLSEPGSARAYSNSIVRSSRTTLDRMEDFEDDPRALGARGHRRSVSRGSYQLQAQM
Sbjct: 64 QRYGPLSEPGSARAYSNSIVRSSRTTLDRMEDFEDDPRALGARGHRRSVSRGSYQLQAQM 123
Query: 587 NRAVYEDRPPGSVVPTSAAEASRAMAGDTSLSENYAFAGMYHVFDQHVDEAVPRVRFAND 766
NRAVYEDRPPGSVVPTSAAEASRAMAGDTSLSENYAFAGMYHVFDQHVDEAVPRVRFAND
Sbjct: 124 NRAVYEDRPPGSVVPTSAAEASRAMAGDTSLSENYAFAGMYHVFDQHVDEAVPRVRFAND 183
Query: 767 DRHRLACCSLDGSISLCQLVPAPPTVLRVLRGHTRGVSDFAWSLSNDILVSTSLDATMRI 946
DRHRLACCSLDGSISLCQLVPAPPTVLRVLRGHTRGVSDFAWSLSNDILVSTSLDATMRI
Sbjct: 184 DRHRLACCSLDGSISLCQLVPAPPTVLRVLRGHTRGVSDFAWSLSNDILVSTSLDATMRI 243
Query: 947 WASEDGRCIREIPDPDGAELLCCTFQPVNNNLTVVGNAKHNVHVMNIXXXXXXXXXXXXX 1126
WASEDGRCIREIPDPDGAELLCCTFQPVNNNLTVVGNAKHNVHVMNI
Sbjct: 244 WASEDGRCIREIPDPDGAELLCCTFQPVNNNLTVVGNAKHNVHVMNISTGKKVKGGSSKL 303
Query: 1127 XXRVLALSFDAPGRLLWAGDDRGSIFSFLFDMATGKLTKAKRLVVHEGSPVTSISARSWV 1306
RVLALSFDAPGRLLWAGDDRGS+FSFLFDMATGKLTKAKRLVVHEGSPVTSISARSWV
Sbjct: 304 TGRVLALSFDAPGRLLWAGDDRGSVFSFLFDMATGKLTKAKRLVVHEGSPVTSISARSWV 363
Query: 1307 SREARDPSXXXXXXXXXXXXYRVVDNEGTLQLKRSFPIEQSSHPVRSIFCPLMSFRQGAC 1486
SREARDPS YRVVDNEGTLQLKRSFPIEQSSHPVRSIFCPLMSFRQGAC
Sbjct: 364 SREARDPSLLINACLNKLLLYRVVDNEGTLQLKRSFPIEQSSHPVRSIFCPLMSFRQGAC 423
Query: 1487 VVTGSEDMCVHF 1522
VVTGSEDMCVHF
Sbjct: 424 VVTGSEDMCVHF 435
>ref|NP_001098945.1| WD repeat-containing protein 5 [Bos taurus].
Length = 334
Score = 60.5 bits (145), Expect = 4e-09
Identities = 40/147 (27%), Positives = 71/147 (48%)
Frame = +2
Query: 848 RVLRGHTRGVSDFAWSLSNDILVSTSLDATMRIWASEDGRCIREIPDPDGAELLCCTFQP 1027
+ + GH G+SD AWS +++LVS S D T++IW G+C++ + + CC F P
Sbjct: 81 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSN-YVFCCNFNP 139
Query: 1028 VNNNLTVVGNAKHNVHVMNIXXXXXXXXXXXXXXXRVLALSFDAPGRLLWAGDDRGSIFS 1207
+NL V G+ +V + ++ V A+ F+ G L+ + G
Sbjct: 140 -QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP-VSAVHFNRDGSLIVSSSYDG--LC 195
Query: 1208 FLFDMATGKLTKAKRLVVHEGSPVTSI 1288
++D A+G+ K L+ + PV+ +
Sbjct: 196 RIWDTASGQCLKT--LIDDDNPPVSFV 220
>ref|XP_001788325.2| PREDICTED: WD repeat domain 5 [Bos taurus].
Length = 330
Score = 59.7 bits (143), Expect = 7e-09
Identities = 42/147 (28%), Positives = 70/147 (47%)
Frame = +2
Query: 848 RVLRGHTRGVSDFAWSLSNDILVSTSLDATMRIWASEDGRCIREIPDPDGAELLCCTFQP 1027
+ L+GH +SD AWS + LVS S D T++IW G+C++ + + CC F P
Sbjct: 77 KTLKGHNLEISDVAWSSDSSRLVSASDDKTLKIWDVRSGKCLKTLKGHSN-YVFCCNFNP 135
Query: 1028 VNNNLTVVGNAKHNVHVMNIXXXXXXXXXXXXXXXRVLALSFDAPGRLLWAGDDRGSIFS 1207
+NL + G+ +V + + V A+ F+ G L+ +G G
Sbjct: 136 -PSNLIISGSFDESVKIWEVKTGKCLKTLSAHSDP-VSAVHFNCSGSLIVSGSYDG--VC 191
Query: 1208 FLFDMATGKLTKAKRLVVHEGSPVTSI 1288
++D A+G+ KA LV + PV+ +
Sbjct: 192 RIWDAASGQCLKA--LVDDDNPPVSFV 216
>ref|XP_002685394.1| PREDICTED: WD repeat, sterile alpha motif and U-box domain containing
1 [Bos taurus].
Length = 476
Score = 49.7 bits (117), Expect = 7e-06
Identities = 37/141 (26%), Positives = 58/141 (41%)
Frame = +2
Query: 779 LACCSLDGSISLCQLVPAPPTVLRVLRGHTRGVSDFAWSLSNDILVSTSLDATMRIWASE 958
LA C+LD +I L L L+ HT V +S S IL S S D T +W ++
Sbjct: 25 LATCALDKTIRLYFLSDFTEVPYSPLKFHTYAVHCCCFSPSGHILASCSTDGTTVLWDTQ 84
Query: 959 DGRCIREIPDPDGAELLCCTFQPVNNNLTVVGNAKHNVHVMNIXXXXXXXXXXXXXXXRV 1138
+G+ + + P G+ + C F P ++ +V A V+ +
Sbjct: 85 NGQILAVMEQPSGSPVRVCRFSP--DSTCLVSGASDGTVVLWNAQSYKLHRCASVKDGSL 142
Query: 1139 LALSFDAPGRLLWAGDDRGSI 1201
+A +F PG L G G +
Sbjct: 143 VACAFFPPGNLFVTGSSCGDL 163
>ref|XP_001252275.1| PREDICTED: WD repeat, sterile alpha motif and U-box domain containing
1 [Bos taurus].
Length = 438
Score = 49.7 bits (117), Expect = 7e-06
Identities = 37/141 (26%), Positives = 58/141 (41%)
Frame = +2
Query: 779 LACCSLDGSISLCQLVPAPPTVLRVLRGHTRGVSDFAWSLSNDILVSTSLDATMRIWASE 958
LA C+LD +I L L L+ HT V +S S IL S S D T +W ++
Sbjct: 25 LATCALDKTIRLYFLSDFTEVPYSPLKFHTYAVHCCCFSPSGHILASCSTDGTTVLWDTQ 84
Query: 959 DGRCIREIPDPDGAELLCCTFQPVNNNLTVVGNAKHNVHVMNIXXXXXXXXXXXXXXXRV 1138
+G+ + + P G+ + C F P ++ +V A V+ +
Sbjct: 85 NGQILAVMEQPSGSPVRVCRFSP--DSTCLVSGASDGTVVLWNAQSYKLHRCASVKDGSL 142
Query: 1139 LALSFDAPGRLLWAGDDRGSI 1201
+A +F PG L G G +
Sbjct: 143 VACAFFPPGNLFVTGSSCGDL 163
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 54,627,233
Number of extensions: 1428384
Number of successful extensions: 6298
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 6279
Number of HSP's successfully gapped: 5
Length of query: 507
Length of database: 17,681,374
Length adjustment: 107
Effective length of query: 400
Effective length of database: 14,140,958
Effective search space: 5656383200
Effective search space used: 5656383200
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002956
(1522 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_863109.1| PREDICTED: similar to WD repeat domain 13 prote... 759 0.0
Alignment gi|XP_538024.2| PREDICTED: similar to WD repeat domain 13 prote... 759 0.0
Alignment gi|XP_863131.1| PREDICTED: similar to WD repeat domain 13 prote... 751 0.0
Alignment gi|XP_863031.1| PREDICTED: similar to WD repeat domain 13 prote... 751 0.0
Alignment gi|XP_863007.1| PREDICTED: similar to WD repeat domain 13 prote... 625 e-179
Alignment gi|XP_862961.1| PREDICTED: similar to WD repeat domain 13 prote... 625 e-179
Alignment gi|XP_863058.1| PREDICTED: similar to WD-repeat protein 13 isof... 306 3e-83
Alignment gi|XP_863084.1| PREDICTED: similar to WD repeat domain 13 prote... 302 6e-82
Alignment gi|XP_850117.1| PREDICTED: similar to WD repeat domain 5 [Canis... 59 1e-08
>ref|XP_863109.1| PREDICTED: similar to WD repeat domain 13 protein isoform 7 [Canis
familiaris].
Length = 485
Score = 759 bits (1961), Expect = 0.0
Identities = 383/432 (88%), Positives = 384/432 (88%)
Frame = +2
Query: 227 VWQQVLAVDARYNAYRTPTFPQFRTQYIRRRSQLLRENAKAGHPPAXXXXXXXXXXXXXX 406
VWQQVLAVDARYNAYRTPTFPQFRTQYIRRRSQLLRENAKAGHPPA
Sbjct: 4 VWQQVLAVDARYNAYRTPTFPQFRTQYIRRRSQLLRENAKAGHPPALRRQYLRLRGQLLG 63
Query: 407 XXXXPLSEPGSARAYSNSIVRSSRTTLDRMEDFEDDPRALGARGHRRSVSRGSYQLQAQM 586
PLSEPGSARAYSNSIVRSSRTTLDRMEDFEDDPRALGARGHRRSVSRGSYQLQAQM
Sbjct: 64 QRYGPLSEPGSARAYSNSIVRSSRTTLDRMEDFEDDPRALGARGHRRSVSRGSYQLQAQM 123
Query: 587 NRAVYEDRPPGSVVPTSAAEASRAMAGDTSLSENYAFAGMYHVFDQHVDEAVPRVRFAND 766
NRAVYEDRPPGSVVPTS AEASRAMAGDTSLSENYAFAGMYHVFDQHVDEAVPRVRFAND
Sbjct: 124 NRAVYEDRPPGSVVPTSVAEASRAMAGDTSLSENYAFAGMYHVFDQHVDEAVPRVRFAND 183
Query: 767 DRHRLACCSLDGSISLCQLVPAPPTVLRVLRGHTRGVSDFAWSLSNDILVSTSLDATMRI 946
DRHRLACCSLDGSISLCQLVPAPPTVLRVLRGHTRGVSDFAWSLSNDILVSTSLDATMRI
Sbjct: 184 DRHRLACCSLDGSISLCQLVPAPPTVLRVLRGHTRGVSDFAWSLSNDILVSTSLDATMRI 243
Query: 947 WASEDGRCIREIPDPDGAELLCCTFQPVNNNLTVVGNAKHNVHVMNIXXXXXXXXXXXXX 1126
WASEDGRCIREIPDPD AELLCCTFQPVNNNLTVVGNAK NVHVMNI
Sbjct: 244 WASEDGRCIREIPDPDSAELLCCTFQPVNNNLTVVGNAKQNVHVMNISTGKKVKGGSSKL 303
Query: 1127 XXRVLALSFDAPGRLLWAGDDRGSIFSFLFDMATGKLTKAKRLVVHEGSPVTSISARSWV 1306
RVLALSFDAPGRLLWAGDDRGS+FSFLFDMATGKLTKAKRLVVHEGSPVTSISARSWV
Sbjct: 304 TGRVLALSFDAPGRLLWAGDDRGSVFSFLFDMATGKLTKAKRLVVHEGSPVTSISARSWV 363
Query: 1307 SREARDPSXXXXXXXXXXXXYRVVDNEGTLQLKRSFPIEQSSHPVRSIFCPLMSFRQGAC 1486
SREARDPS YRVVDNEGTLQLKRSFPIEQSSHPVRSIFCPLMSFRQGAC
Sbjct: 364 SREARDPSLLINACLNKLLLYRVVDNEGTLQLKRSFPIEQSSHPVRSIFCPLMSFRQGAC 423
Query: 1487 VVTGSEDMCVHF 1522
VVTGSEDMCVHF
Sbjct: 424 VVTGSEDMCVHF 435
>ref|XP_538024.2| PREDICTED: similar to WD repeat domain 13 protein isoform 1 [Canis
familiaris].
Length = 485
Score = 759 bits (1961), Expect = 0.0
Identities = 383/432 (88%), Positives = 384/432 (88%)
Frame = +2
Query: 227 VWQQVLAVDARYNAYRTPTFPQFRTQYIRRRSQLLRENAKAGHPPAXXXXXXXXXXXXXX 406
VWQQVLAVDARYNAYRTPTFPQFRTQYIRRRSQLLRENAKAGHPPA
Sbjct: 4 VWQQVLAVDARYNAYRTPTFPQFRTQYIRRRSQLLRENAKAGHPPALRRQYLRLRGQLLG 63
Query: 407 XXXXPLSEPGSARAYSNSIVRSSRTTLDRMEDFEDDPRALGARGHRRSVSRGSYQLQAQM 586
PLSEPGSARAYSNSIVRSSRTTLDRMEDFEDDPRALGARGHRRSVSRGSYQLQAQM
Sbjct: 64 QRYGPLSEPGSARAYSNSIVRSSRTTLDRMEDFEDDPRALGARGHRRSVSRGSYQLQAQM 123
Query: 587 NRAVYEDRPPGSVVPTSAAEASRAMAGDTSLSENYAFAGMYHVFDQHVDEAVPRVRFAND 766
NRAVYEDRPPGSVVPTS AEASRAMAGDTSLSENYAFAGMYHVFDQHVDEAVPRVRFAND
Sbjct: 124 NRAVYEDRPPGSVVPTSVAEASRAMAGDTSLSENYAFAGMYHVFDQHVDEAVPRVRFAND 183
Query: 767 DRHRLACCSLDGSISLCQLVPAPPTVLRVLRGHTRGVSDFAWSLSNDILVSTSLDATMRI 946
DRHRLACCSLDGSISLCQLVPAPPTVLRVLRGHTRGVSDFAWSLSNDILVSTSLDATMRI
Sbjct: 184 DRHRLACCSLDGSISLCQLVPAPPTVLRVLRGHTRGVSDFAWSLSNDILVSTSLDATMRI 243
Query: 947 WASEDGRCIREIPDPDGAELLCCTFQPVNNNLTVVGNAKHNVHVMNIXXXXXXXXXXXXX 1126
WASEDGRCIREIPDPD AELLCCTFQPVNNNLTVVGNAK NVHVMNI
Sbjct: 244 WASEDGRCIREIPDPDSAELLCCTFQPVNNNLTVVGNAKQNVHVMNISTGKKVKGGSSKL 303
Query: 1127 XXRVLALSFDAPGRLLWAGDDRGSIFSFLFDMATGKLTKAKRLVVHEGSPVTSISARSWV 1306
RVLALSFDAPGRLLWAGDDRGS+FSFLFDMATGKLTKAKRLVVHEGSPVTSISARSWV
Sbjct: 304 TGRVLALSFDAPGRLLWAGDDRGSVFSFLFDMATGKLTKAKRLVVHEGSPVTSISARSWV 363
Query: 1307 SREARDPSXXXXXXXXXXXXYRVVDNEGTLQLKRSFPIEQSSHPVRSIFCPLMSFRQGAC 1486
SREARDPS YRVVDNEGTLQLKRSFPIEQSSHPVRSIFCPLMSFRQGAC
Sbjct: 364 SREARDPSLLINACLNKLLLYRVVDNEGTLQLKRSFPIEQSSHPVRSIFCPLMSFRQGAC 423
Query: 1487 VVTGSEDMCVHF 1522
VVTGSEDMCVHF
Sbjct: 424 VVTGSEDMCVHF 435
>ref|XP_863131.1| PREDICTED: similar to WD repeat domain 13 protein isoform 8 [Canis
familiaris].
Length = 495
Score = 751 bits (1940), Expect = 0.0
Identities = 383/442 (86%), Positives = 384/442 (86%), Gaps = 10/442 (2%)
Frame = +2
Query: 227 VWQQVLAVDARYNAYRTPTFPQFRTQYIRRRSQLLRENAKAGHPPAXXXXXXXXXXXXXX 406
VWQQVLAVDARYNAYRTPTFPQFRTQYIRRRSQLLRENAKAGHPPA
Sbjct: 4 VWQQVLAVDARYNAYRTPTFPQFRTQYIRRRSQLLRENAKAGHPPALRRQYLRLRGQLLG 63
Query: 407 XXXXPLSEPGSARAYSNSIVRSSRTTLDRMEDFEDDPRALGARGHRRSVSRGSYQLQAQM 586
PLSEPGSARAYSNSIVRSSRTTLDRMEDFEDDPRALGARGHRRSVSRGSYQLQAQM
Sbjct: 64 QRYGPLSEPGSARAYSNSIVRSSRTTLDRMEDFEDDPRALGARGHRRSVSRGSYQLQAQM 123
Query: 587 NRAVYEDRPPGSVVPTSAAEASRAMAGDTSLSENYAFAGMYHVFDQHVDEAVPRVRFAND 766
NRAVYEDRPPGSVVPTS AEASRAMAGDTSLSENYAFAGMYHVFDQHVDEAVPRVRFAND
Sbjct: 124 NRAVYEDRPPGSVVPTSVAEASRAMAGDTSLSENYAFAGMYHVFDQHVDEAVPRVRFAND 183
Query: 767 DRHRLACCSLDGSISLCQLVPAPPTVLRVLRGHTRGVSDFAWSLSNDILVSTSLDATMRI 946
DRHRLACCSLDGSISLCQLVPAPPTVLRVLRGHTRGVSDFAWSLSNDILVSTSLDATMRI
Sbjct: 184 DRHRLACCSLDGSISLCQLVPAPPTVLRVLRGHTRGVSDFAWSLSNDILVSTSLDATMRI 243
Query: 947 WASEDGRCIREIPDPDGAELLCCTFQPVNNNLTV----------VGNAKHNVHVMNIXXX 1096
WASEDGRCIREIPDPD AELLCCTFQPVNNNLTV VGNAK NVHVMNI
Sbjct: 244 WASEDGRCIREIPDPDSAELLCCTFQPVNNNLTVVRLQGARSPRVGNAKQNVHVMNISTG 303
Query: 1097 XXXXXXXXXXXXRVLALSFDAPGRLLWAGDDRGSIFSFLFDMATGKLTKAKRLVVHEGSP 1276
RVLALSFDAPGRLLWAGDDRGS+FSFLFDMATGKLTKAKRLVVHEGSP
Sbjct: 304 KKVKGGSSKLTGRVLALSFDAPGRLLWAGDDRGSVFSFLFDMATGKLTKAKRLVVHEGSP 363
Query: 1277 VTSISARSWVSREARDPSXXXXXXXXXXXXYRVVDNEGTLQLKRSFPIEQSSHPVRSIFC 1456
VTSISARSWVSREARDPS YRVVDNEGTLQLKRSFPIEQSSHPVRSIFC
Sbjct: 364 VTSISARSWVSREARDPSLLINACLNKLLLYRVVDNEGTLQLKRSFPIEQSSHPVRSIFC 423
Query: 1457 PLMSFRQGACVVTGSEDMCVHF 1522
PLMSFRQGACVVTGSEDMCVHF
Sbjct: 424 PLMSFRQGACVVTGSEDMCVHF 445
>ref|XP_863031.1| PREDICTED: similar to WD repeat domain 13 protein isoform 4 [Canis
familiaris].
Length = 496
Score = 751 bits (1939), Expect = 0.0
Identities = 383/443 (86%), Positives = 384/443 (86%), Gaps = 11/443 (2%)
Frame = +2
Query: 227 VWQQVLAVDARYNAYRTPTFPQFRTQYIRRRSQLLRENAKAGHPPAXXXXXXXXXXXXXX 406
VWQQVLAVDARYNAYRTPTFPQFRTQYIRRRSQLLRENAKAGHPPA
Sbjct: 4 VWQQVLAVDARYNAYRTPTFPQFRTQYIRRRSQLLRENAKAGHPPALRRQYLRLRGQLLG 63
Query: 407 XXXXPLSEPGSARAYSNSIVRSSRTTLDRME-----------DFEDDPRALGARGHRRSV 553
PLSEPGSARAYSNSIVRSSRTTLDRME DFEDDPRALGARGHRRSV
Sbjct: 64 QRYGPLSEPGSARAYSNSIVRSSRTTLDRMEVNVPILALCLQDFEDDPRALGARGHRRSV 123
Query: 554 SRGSYQLQAQMNRAVYEDRPPGSVVPTSAAEASRAMAGDTSLSENYAFAGMYHVFDQHVD 733
SRGSYQLQAQMNRAVYEDRPPGSVVPTS AEASRAMAGDTSLSENYAFAGMYHVFDQHVD
Sbjct: 124 SRGSYQLQAQMNRAVYEDRPPGSVVPTSVAEASRAMAGDTSLSENYAFAGMYHVFDQHVD 183
Query: 734 EAVPRVRFANDDRHRLACCSLDGSISLCQLVPAPPTVLRVLRGHTRGVSDFAWSLSNDIL 913
EAVPRVRFANDDRHRLACCSLDGSISLCQLVPAPPTVLRVLRGHTRGVSDFAWSLSNDIL
Sbjct: 184 EAVPRVRFANDDRHRLACCSLDGSISLCQLVPAPPTVLRVLRGHTRGVSDFAWSLSNDIL 243
Query: 914 VSTSLDATMRIWASEDGRCIREIPDPDGAELLCCTFQPVNNNLTVVGNAKHNVHVMNIXX 1093
VSTSLDATMRIWASEDGRCIREIPDPD AELLCCTFQPVNNNLTVVGNAK NVHVMNI
Sbjct: 244 VSTSLDATMRIWASEDGRCIREIPDPDSAELLCCTFQPVNNNLTVVGNAKQNVHVMNIST 303
Query: 1094 XXXXXXXXXXXXXRVLALSFDAPGRLLWAGDDRGSIFSFLFDMATGKLTKAKRLVVHEGS 1273
RVLALSFDAPGRLLWAGDDRGS+FSFLFDMATGKLTKAKRLVVHEGS
Sbjct: 304 GKKVKGGSSKLTGRVLALSFDAPGRLLWAGDDRGSVFSFLFDMATGKLTKAKRLVVHEGS 363
Query: 1274 PVTSISARSWVSREARDPSXXXXXXXXXXXXYRVVDNEGTLQLKRSFPIEQSSHPVRSIF 1453
PVTSISARSWVSREARDPS YRVVDNEGTLQLKRSFPIEQSSHPVRSIF
Sbjct: 364 PVTSISARSWVSREARDPSLLINACLNKLLLYRVVDNEGTLQLKRSFPIEQSSHPVRSIF 423
Query: 1454 CPLMSFRQGACVVTGSEDMCVHF 1522
CPLMSFRQGACVVTGSEDMCVHF
Sbjct: 424 CPLMSFRQGACVVTGSEDMCVHF 446
>ref|XP_863007.1| PREDICTED: similar to WD repeat domain 13 protein isoform 3 [Canis
familiaris].
Length = 393
Score = 625 bits (1612), Expect = e-179
Identities = 312/343 (90%), Positives = 313/343 (91%)
Frame = +2
Query: 494 MEDFEDDPRALGARGHRRSVSRGSYQLQAQMNRAVYEDRPPGSVVPTSAAEASRAMAGDT 673
MEDFEDDPRALGARGHRRSVSRGSYQLQAQMNRAVYEDRPPGSVVPTS AEASRAMAGDT
Sbjct: 1 MEDFEDDPRALGARGHRRSVSRGSYQLQAQMNRAVYEDRPPGSVVPTSVAEASRAMAGDT 60
Query: 674 SLSENYAFAGMYHVFDQHVDEAVPRVRFANDDRHRLACCSLDGSISLCQLVPAPPTVLRV 853
SLSENYAFAGMYHVFDQHVDEAVPRVRFANDDRHRLACCSLDGSISLCQLVPAPPTVLRV
Sbjct: 61 SLSENYAFAGMYHVFDQHVDEAVPRVRFANDDRHRLACCSLDGSISLCQLVPAPPTVLRV 120
Query: 854 LRGHTRGVSDFAWSLSNDILVSTSLDATMRIWASEDGRCIREIPDPDGAELLCCTFQPVN 1033
LRGHTRGVSDFAWSLSNDILVSTSLDATMRIWASEDGRCIREIPDPD AELLCCTFQPVN
Sbjct: 121 LRGHTRGVSDFAWSLSNDILVSTSLDATMRIWASEDGRCIREIPDPDSAELLCCTFQPVN 180
Query: 1034 NNLTVVGNAKHNVHVMNIXXXXXXXXXXXXXXXRVLALSFDAPGRLLWAGDDRGSIFSFL 1213
NNLTVVGNAK NVHVMNI RVLALSFDAPGRLLWAGDDRGS+FSFL
Sbjct: 181 NNLTVVGNAKQNVHVMNISTGKKVKGGSSKLTGRVLALSFDAPGRLLWAGDDRGSVFSFL 240
Query: 1214 FDMATGKLTKAKRLVVHEGSPVTSISARSWVSREARDPSXXXXXXXXXXXXYRVVDNEGT 1393
FDMATGKLTKAKRLVVHEGSPVTSISARSWVSREARDPS YRVVDNEGT
Sbjct: 241 FDMATGKLTKAKRLVVHEGSPVTSISARSWVSREARDPSLLINACLNKLLLYRVVDNEGT 300
Query: 1394 LQLKRSFPIEQSSHPVRSIFCPLMSFRQGACVVTGSEDMCVHF 1522
LQLKRSFPIEQSSHPVRSIFCPLMSFRQGACVVTGSEDMCVHF
Sbjct: 301 LQLKRSFPIEQSSHPVRSIFCPLMSFRQGACVVTGSEDMCVHF 343
>ref|XP_862961.1| PREDICTED: similar to WD repeat domain 13 protein isoform 2 [Canis
familiaris].
Length = 393
Score = 625 bits (1612), Expect = e-179
Identities = 312/343 (90%), Positives = 313/343 (91%)
Frame = +2
Query: 494 MEDFEDDPRALGARGHRRSVSRGSYQLQAQMNRAVYEDRPPGSVVPTSAAEASRAMAGDT 673
MEDFEDDPRALGARGHRRSVSRGSYQLQAQMNRAVYEDRPPGSVVPTS AEASRAMAGDT
Sbjct: 1 MEDFEDDPRALGARGHRRSVSRGSYQLQAQMNRAVYEDRPPGSVVPTSVAEASRAMAGDT 60
Query: 674 SLSENYAFAGMYHVFDQHVDEAVPRVRFANDDRHRLACCSLDGSISLCQLVPAPPTVLRV 853
SLSENYAFAGMYHVFDQHVDEAVPRVRFANDDRHRLACCSLDGSISLCQLVPAPPTVLRV
Sbjct: 61 SLSENYAFAGMYHVFDQHVDEAVPRVRFANDDRHRLACCSLDGSISLCQLVPAPPTVLRV 120
Query: 854 LRGHTRGVSDFAWSLSNDILVSTSLDATMRIWASEDGRCIREIPDPDGAELLCCTFQPVN 1033
LRGHTRGVSDFAWSLSNDILVSTSLDATMRIWASEDGRCIREIPDPD AELLCCTFQPVN
Sbjct: 121 LRGHTRGVSDFAWSLSNDILVSTSLDATMRIWASEDGRCIREIPDPDSAELLCCTFQPVN 180
Query: 1034 NNLTVVGNAKHNVHVMNIXXXXXXXXXXXXXXXRVLALSFDAPGRLLWAGDDRGSIFSFL 1213
NNLTVVGNAK NVHVMNI RVLALSFDAPGRLLWAGDDRGS+FSFL
Sbjct: 181 NNLTVVGNAKQNVHVMNISTGKKVKGGSSKLTGRVLALSFDAPGRLLWAGDDRGSVFSFL 240
Query: 1214 FDMATGKLTKAKRLVVHEGSPVTSISARSWVSREARDPSXXXXXXXXXXXXYRVVDNEGT 1393
FDMATGKLTKAKRLVVHEGSPVTSISARSWVSREARDPS YRVVDNEGT
Sbjct: 241 FDMATGKLTKAKRLVVHEGSPVTSISARSWVSREARDPSLLINACLNKLLLYRVVDNEGT 300
Query: 1394 LQLKRSFPIEQSSHPVRSIFCPLMSFRQGACVVTGSEDMCVHF 1522
LQLKRSFPIEQSSHPVRSIFCPLMSFRQGACVVTGSEDMCVHF
Sbjct: 301 LQLKRSFPIEQSSHPVRSIFCPLMSFRQGACVVTGSEDMCVHF 343
>ref|XP_863058.1| PREDICTED: similar to WD-repeat protein 13 isoform 5 [Canis
familiaris].
Length = 195
Score = 306 bits (785), Expect = 3e-83
Identities = 155/174 (89%), Positives = 155/174 (89%)
Frame = +2
Query: 227 VWQQVLAVDARYNAYRTPTFPQFRTQYIRRRSQLLRENAKAGHPPAXXXXXXXXXXXXXX 406
VWQQVLAVDARYNAYRTPTFPQFRTQYIRRRSQLLRENAKAGHPPA
Sbjct: 4 VWQQVLAVDARYNAYRTPTFPQFRTQYIRRRSQLLRENAKAGHPPALRRQYLRLRGQLLG 63
Query: 407 XXXXPLSEPGSARAYSNSIVRSSRTTLDRMEDFEDDPRALGARGHRRSVSRGSYQLQAQM 586
PLSEPGSARAYSNSIVRSSRTTLDRMEDFEDDPRALGARGHRRSVSRGSYQLQAQM
Sbjct: 64 QRYGPLSEPGSARAYSNSIVRSSRTTLDRMEDFEDDPRALGARGHRRSVSRGSYQLQAQM 123
Query: 587 NRAVYEDRPPGSVVPTSAAEASRAMAGDTSLSENYAFAGMYHVFDQHVDEAVPR 748
NRAVYEDRPPGSVVPTS AEASRAMAGDTSLSENYAFAGMYHVFDQHVDEAVPR
Sbjct: 124 NRAVYEDRPPGSVVPTSVAEASRAMAGDTSLSENYAFAGMYHVFDQHVDEAVPR 177
>ref|XP_863084.1| PREDICTED: similar to WD repeat domain 13 protein isoform 6 [Canis
familiaris].
Length = 367
Score = 302 bits (773), Expect = 6e-82
Identities = 153/176 (86%), Positives = 155/176 (88%)
Frame = +2
Query: 227 VWQQVLAVDARYNAYRTPTFPQFRTQYIRRRSQLLRENAKAGHPPAXXXXXXXXXXXXXX 406
VWQQVLAVDARYNAYRTPTFPQFRTQYIRRRSQLLRENAKAGHPPA
Sbjct: 4 VWQQVLAVDARYNAYRTPTFPQFRTQYIRRRSQLLRENAKAGHPPALRRQYLRLRGQLLG 63
Query: 407 XXXXPLSEPGSARAYSNSIVRSSRTTLDRMEDFEDDPRALGARGHRRSVSRGSYQLQAQM 586
PLSEPGSARAYSNSIVRSSRTTLDRMEDFEDDPRALGARGHRRSVSRGSYQLQAQM
Sbjct: 64 QRYGPLSEPGSARAYSNSIVRSSRTTLDRMEDFEDDPRALGARGHRRSVSRGSYQLQAQM 123
Query: 587 NRAVYEDRPPGSVVPTSAAEASRAMAGDTSLSENYAFAGMYHVFDQHVDEAVPRVR 754
NRAVYEDRPPGSVVPTS AEASRAMAGDTSLSENYAFAGMYHVFDQHVDEA +V+
Sbjct: 124 NRAVYEDRPPGSVVPTSVAEASRAMAGDTSLSENYAFAGMYHVFDQHVDEAGKKVK 179
Score = 235 bits (600), Expect = 7e-62
Identities = 117/130 (90%), Positives = 118/130 (90%)
Frame = +2
Query: 1133 RVLALSFDAPGRLLWAGDDRGSIFSFLFDMATGKLTKAKRLVVHEGSPVTSISARSWVSR 1312
RVLALSFDAPGRLLWAGDDRGS+FSFLFDMATGKLTKAKRLVVHEGSPVTSISARSWVSR
Sbjct: 188 RVLALSFDAPGRLLWAGDDRGSVFSFLFDMATGKLTKAKRLVVHEGSPVTSISARSWVSR 247
Query: 1313 EARDPSXXXXXXXXXXXXYRVVDNEGTLQLKRSFPIEQSSHPVRSIFCPLMSFRQGACVV 1492
EARDPS YRVVDNEGTLQLKRSFPIEQSSHPVRSIFCPLMSFRQGACVV
Sbjct: 248 EARDPSLLINACLNKLLLYRVVDNEGTLQLKRSFPIEQSSHPVRSIFCPLMSFRQGACVV 307
Query: 1493 TGSEDMCVHF 1522
TGSEDMCVHF
Sbjct: 308 TGSEDMCVHF 317
>ref|XP_850117.1| PREDICTED: similar to WD repeat domain 5 [Canis familiaris].
Length = 334
Score = 58.9 bits (141), Expect = 1e-08
Identities = 27/80 (33%), Positives = 46/80 (57%)
Frame = +2
Query: 848 RVLRGHTRGVSDFAWSLSNDILVSTSLDATMRIWASEDGRCIREIPDPDGAELLCCTFQP 1027
+ + GH G+SD AWS +++LVS S D T++IW G+C++ + + CC F P
Sbjct: 81 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSN-YVFCCNFNP 139
Query: 1028 VNNNLTVVGNAKHNVHVMNI 1087
+NL V G+ +V + ++
Sbjct: 140 -QSNLIVSGSFDESVRIWDV 158
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 56,850,027
Number of extensions: 1457645
Number of successful extensions: 6214
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 6168
Number of HSP's successfully gapped: 10
Length of query: 507
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 400
Effective length of database: 15,307,552
Effective search space: 6123020800
Effective search space used: 6123020800
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002956
(1522 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_060353.2| WD repeat-containing protein 13 isoform 1 [Homo... 764 0.0
Alignment gi|NP_001159898.1| WD repeat-containing protein 13 isoform 2 [H... 630 e-180
Alignment gi|NP_438172.1| WD repeat-containing protein 5 [Homo sapiens]. 60 4e-09
Alignment gi|NP_060058.1| WD repeat-containing protein 5 [Homo sapiens]. 60 4e-09
Alignment gi|NP_061942.2| WD repeat-containing protein 5B [Homo sapiens]. 56 1e-07
>ref|NP_060353.2| WD repeat-containing protein 13 isoform 1 [Homo sapiens].
Length = 485
Score = 764 bits (1973), Expect = 0.0
Identities = 385/432 (89%), Positives = 386/432 (89%)
Frame = +2
Query: 227 VWQQVLAVDARYNAYRTPTFPQFRTQYIRRRSQLLRENAKAGHPPAXXXXXXXXXXXXXX 406
VWQQVLAVDARYNAYRTPTFPQFRTQYIRRRSQLLRENAKAGHPPA
Sbjct: 4 VWQQVLAVDARYNAYRTPTFPQFRTQYIRRRSQLLRENAKAGHPPALRRQYLRLRGQLLG 63
Query: 407 XXXXPLSEPGSARAYSNSIVRSSRTTLDRMEDFEDDPRALGARGHRRSVSRGSYQLQAQM 586
PLSEPGSARAYSNSIVRSSRTTLDRMEDFEDDPRALGARGHRRSVSRGSYQLQAQM
Sbjct: 64 QRYGPLSEPGSARAYSNSIVRSSRTTLDRMEDFEDDPRALGARGHRRSVSRGSYQLQAQM 123
Query: 587 NRAVYEDRPPGSVVPTSAAEASRAMAGDTSLSENYAFAGMYHVFDQHVDEAVPRVRFAND 766
NRAVYEDRPPGSVVPTSAAEASRAMAGDTSLSENYAFAGMYHVFDQHVDEAVPRVRFAND
Sbjct: 124 NRAVYEDRPPGSVVPTSAAEASRAMAGDTSLSENYAFAGMYHVFDQHVDEAVPRVRFAND 183
Query: 767 DRHRLACCSLDGSISLCQLVPAPPTVLRVLRGHTRGVSDFAWSLSNDILVSTSLDATMRI 946
DRHRLACCSLDGSISLCQLVPAPPTVLRVLRGHTRGVSDFAWSLSNDILVSTSLDATMRI
Sbjct: 184 DRHRLACCSLDGSISLCQLVPAPPTVLRVLRGHTRGVSDFAWSLSNDILVSTSLDATMRI 243
Query: 947 WASEDGRCIREIPDPDGAELLCCTFQPVNNNLTVVGNAKHNVHVMNIXXXXXXXXXXXXX 1126
WASEDGRCIREIPDPD AELLCCTFQPVNNNLTVVGNAKHNVHVMNI
Sbjct: 244 WASEDGRCIREIPDPDSAELLCCTFQPVNNNLTVVGNAKHNVHVMNISTGKKVKGGSSKL 303
Query: 1127 XXRVLALSFDAPGRLLWAGDDRGSIFSFLFDMATGKLTKAKRLVVHEGSPVTSISARSWV 1306
RVLALSFDAPGRLLWAGDDRGS+FSFLFDMATGKLTKAKRLVVHEGSPVTSISARSWV
Sbjct: 304 TGRVLALSFDAPGRLLWAGDDRGSVFSFLFDMATGKLTKAKRLVVHEGSPVTSISARSWV 363
Query: 1307 SREARDPSXXXXXXXXXXXXYRVVDNEGTLQLKRSFPIEQSSHPVRSIFCPLMSFRQGAC 1486
SREARDPS YRVVDNEGTLQLKRSFPIEQSSHPVRSIFCPLMSFRQGAC
Sbjct: 364 SREARDPSLLINACLNKLLLYRVVDNEGTLQLKRSFPIEQSSHPVRSIFCPLMSFRQGAC 423
Query: 1487 VVTGSEDMCVHF 1522
VVTGSEDMCVHF
Sbjct: 424 VVTGSEDMCVHF 435
>ref|NP_001159898.1| WD repeat-containing protein 13 isoform 2 [Homo sapiens].
Length = 393
Score = 630 bits (1624), Expect = e-180
Identities = 314/343 (91%), Positives = 315/343 (91%)
Frame = +2
Query: 494 MEDFEDDPRALGARGHRRSVSRGSYQLQAQMNRAVYEDRPPGSVVPTSAAEASRAMAGDT 673
MEDFEDDPRALGARGHRRSVSRGSYQLQAQMNRAVYEDRPPGSVVPTSAAEASRAMAGDT
Sbjct: 1 MEDFEDDPRALGARGHRRSVSRGSYQLQAQMNRAVYEDRPPGSVVPTSAAEASRAMAGDT 60
Query: 674 SLSENYAFAGMYHVFDQHVDEAVPRVRFANDDRHRLACCSLDGSISLCQLVPAPPTVLRV 853
SLSENYAFAGMYHVFDQHVDEAVPRVRFANDDRHRLACCSLDGSISLCQLVPAPPTVLRV
Sbjct: 61 SLSENYAFAGMYHVFDQHVDEAVPRVRFANDDRHRLACCSLDGSISLCQLVPAPPTVLRV 120
Query: 854 LRGHTRGVSDFAWSLSNDILVSTSLDATMRIWASEDGRCIREIPDPDGAELLCCTFQPVN 1033
LRGHTRGVSDFAWSLSNDILVSTSLDATMRIWASEDGRCIREIPDPD AELLCCTFQPVN
Sbjct: 121 LRGHTRGVSDFAWSLSNDILVSTSLDATMRIWASEDGRCIREIPDPDSAELLCCTFQPVN 180
Query: 1034 NNLTVVGNAKHNVHVMNIXXXXXXXXXXXXXXXRVLALSFDAPGRLLWAGDDRGSIFSFL 1213
NNLTVVGNAKHNVHVMNI RVLALSFDAPGRLLWAGDDRGS+FSFL
Sbjct: 181 NNLTVVGNAKHNVHVMNISTGKKVKGGSSKLTGRVLALSFDAPGRLLWAGDDRGSVFSFL 240
Query: 1214 FDMATGKLTKAKRLVVHEGSPVTSISARSWVSREARDPSXXXXXXXXXXXXYRVVDNEGT 1393
FDMATGKLTKAKRLVVHEGSPVTSISARSWVSREARDPS YRVVDNEGT
Sbjct: 241 FDMATGKLTKAKRLVVHEGSPVTSISARSWVSREARDPSLLINACLNKLLLYRVVDNEGT 300
Query: 1394 LQLKRSFPIEQSSHPVRSIFCPLMSFRQGACVVTGSEDMCVHF 1522
LQLKRSFPIEQSSHPVRSIFCPLMSFRQGACVVTGSEDMCVHF
Sbjct: 301 LQLKRSFPIEQSSHPVRSIFCPLMSFRQGACVVTGSEDMCVHF 343
>ref|NP_438172.1| WD repeat-containing protein 5 [Homo sapiens].
Length = 334
Score = 60.5 bits (145), Expect = 4e-09
Identities = 40/147 (27%), Positives = 71/147 (48%)
Frame = +2
Query: 848 RVLRGHTRGVSDFAWSLSNDILVSTSLDATMRIWASEDGRCIREIPDPDGAELLCCTFQP 1027
+ + GH G+SD AWS +++LVS S D T++IW G+C++ + + CC F P
Sbjct: 81 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSN-YVFCCNFNP 139
Query: 1028 VNNNLTVVGNAKHNVHVMNIXXXXXXXXXXXXXXXRVLALSFDAPGRLLWAGDDRGSIFS 1207
+NL V G+ +V + ++ V A+ F+ G L+ + G
Sbjct: 140 -QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP-VSAVHFNRDGSLIVSSSYDG--LC 195
Query: 1208 FLFDMATGKLTKAKRLVVHEGSPVTSI 1288
++D A+G+ K L+ + PV+ +
Sbjct: 196 RIWDTASGQCLKT--LIDDDNPPVSFV 220
>ref|NP_060058.1| WD repeat-containing protein 5 [Homo sapiens].
Length = 334
Score = 60.5 bits (145), Expect = 4e-09
Identities = 40/147 (27%), Positives = 71/147 (48%)
Frame = +2
Query: 848 RVLRGHTRGVSDFAWSLSNDILVSTSLDATMRIWASEDGRCIREIPDPDGAELLCCTFQP 1027
+ + GH G+SD AWS +++LVS S D T++IW G+C++ + + CC F P
Sbjct: 81 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSN-YVFCCNFNP 139
Query: 1028 VNNNLTVVGNAKHNVHVMNIXXXXXXXXXXXXXXXRVLALSFDAPGRLLWAGDDRGSIFS 1207
+NL V G+ +V + ++ V A+ F+ G L+ + G
Sbjct: 140 -QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP-VSAVHFNRDGSLIVSSSYDG--LC 195
Query: 1208 FLFDMATGKLTKAKRLVVHEGSPVTSI 1288
++D A+G+ K L+ + PV+ +
Sbjct: 196 RIWDTASGQCLKT--LIDDDNPPVSFV 220
>ref|NP_061942.2| WD repeat-containing protein 5B [Homo sapiens].
Length = 330
Score = 55.8 bits (133), Expect = 1e-07
Identities = 40/147 (27%), Positives = 67/147 (45%)
Frame = +2
Query: 848 RVLRGHTRGVSDFAWSLSNDILVSTSLDATMRIWASEDGRCIREIPDPDGAELLCCTFQP 1027
+ L GH +SD AWS + LVS S D T+++W G+C++ + + CC F P
Sbjct: 77 KTLYGHNLEISDVAWSSDSSRLVSASDDKTLKLWDVRSGKCLKTLKGHSN-YVFCCNFNP 135
Query: 1028 VNNNLTVVGNAKHNVHVMNIXXXXXXXXXXXXXXXRVLALSFDAPGRLLWAGDDRGSIFS 1207
+NL + G+ V + + V A+ F+ G L+ +G G
Sbjct: 136 -PSNLIISGSFDETVKIWEVKTGKCLKTLSAHSDP-VSAVHFNCSGSLIVSGSYDG--LC 191
Query: 1208 FLFDMATGKLTKAKRLVVHEGSPVTSI 1288
++D A+G+ K LV + PV+ +
Sbjct: 192 RIWDAASGQCLKT--LVDDDNPPVSFV 216
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 55,651,004
Number of extensions: 1429810
Number of successful extensions: 6117
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 6088
Number of HSP's successfully gapped: 5
Length of query: 507
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 400
Effective length of database: 14,770,016
Effective search space: 5908006400
Effective search space used: 5908006400
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002956
(1522 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_080413.2| WD repeat-containing protein 13 isoform 1 [Mus ... 761 0.0
Alignment gi|NP_543124.1| WD repeat-containing protein 5 [Mus musculus]. 60 3e-09
Alignment gi|NP_081389.1| WD repeat-containing protein 5B [Mus musculus]. 57 3e-08
>ref|NP_080413.2| WD repeat-containing protein 13 isoform 1 [Mus musculus].
Length = 485
Score = 761 bits (1965), Expect = 0.0
Identities = 383/432 (88%), Positives = 384/432 (88%)
Frame = +2
Query: 227 VWQQVLAVDARYNAYRTPTFPQFRTQYIRRRSQLLRENAKAGHPPAXXXXXXXXXXXXXX 406
VWQQVLAVDARYNAYRTPTFPQFRTQYIRRRSQLLRENAKAGHPPA
Sbjct: 4 VWQQVLAVDARYNAYRTPTFPQFRTQYIRRRSQLLRENAKAGHPPALRRQYLRLRGQLLG 63
Query: 407 XXXXPLSEPGSARAYSNSIVRSSRTTLDRMEDFEDDPRALGARGHRRSVSRGSYQLQAQM 586
PLSEPGSARAYSNSIVRSSRTTLDRMEDFEDDPRALGARGHRRSVSRGSYQLQAQM
Sbjct: 64 QRYGPLSEPGSARAYSNSIVRSSRTTLDRMEDFEDDPRALGARGHRRSVSRGSYQLQAQM 123
Query: 587 NRAVYEDRPPGSVVPTSAAEASRAMAGDTSLSENYAFAGMYHVFDQHVDEAVPRVRFAND 766
NRAVYEDRPPGSVVPTS AEASRAMAGDTSLSENYAFAGMYHVFDQHVDEAVPRVRFAND
Sbjct: 124 NRAVYEDRPPGSVVPTSVAEASRAMAGDTSLSENYAFAGMYHVFDQHVDEAVPRVRFAND 183
Query: 767 DRHRLACCSLDGSISLCQLVPAPPTVLRVLRGHTRGVSDFAWSLSNDILVSTSLDATMRI 946
DRHRLACCSLDGSISLCQLVPAPPTVL VLRGHTRGVSDFAWSLSNDILVSTSLDATMRI
Sbjct: 184 DRHRLACCSLDGSISLCQLVPAPPTVLHVLRGHTRGVSDFAWSLSNDILVSTSLDATMRI 243
Query: 947 WASEDGRCIREIPDPDGAELLCCTFQPVNNNLTVVGNAKHNVHVMNIXXXXXXXXXXXXX 1126
WASEDGRCIREIPDPDGAELLCCTFQPVNNNLTVVGNAKHNVHVMNI
Sbjct: 244 WASEDGRCIREIPDPDGAELLCCTFQPVNNNLTVVGNAKHNVHVMNISTGKKVKGGSSKL 303
Query: 1127 XXRVLALSFDAPGRLLWAGDDRGSIFSFLFDMATGKLTKAKRLVVHEGSPVTSISARSWV 1306
RVLALSFDAPGRLLWAGDDRGS+FSFLFDMATGKLTKAKRLVVHEGSPVTSISARSWV
Sbjct: 304 TGRVLALSFDAPGRLLWAGDDRGSVFSFLFDMATGKLTKAKRLVVHEGSPVTSISARSWV 363
Query: 1307 SREARDPSXXXXXXXXXXXXYRVVDNEGTLQLKRSFPIEQSSHPVRSIFCPLMSFRQGAC 1486
SREARDPS YRVVDNEG LQLKRSFPIEQSSHPVRSIFCPLMSFRQGAC
Sbjct: 364 SREARDPSLLINACLNKLLLYRVVDNEGALQLKRSFPIEQSSHPVRSIFCPLMSFRQGAC 423
Query: 1487 VVTGSEDMCVHF 1522
VVTGSEDMCVHF
Sbjct: 424 VVTGSEDMCVHF 435
>ref|NP_543124.1| WD repeat-containing protein 5 [Mus musculus].
Length = 334
Score = 60.5 bits (145), Expect = 3e-09
Identities = 40/147 (27%), Positives = 71/147 (48%)
Frame = +2
Query: 848 RVLRGHTRGVSDFAWSLSNDILVSTSLDATMRIWASEDGRCIREIPDPDGAELLCCTFQP 1027
+ + GH G+SD AWS +++LVS S D T++IW G+C++ + + CC F P
Sbjct: 81 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSN-YVFCCNFNP 139
Query: 1028 VNNNLTVVGNAKHNVHVMNIXXXXXXXXXXXXXXXRVLALSFDAPGRLLWAGDDRGSIFS 1207
+NL V G+ +V + ++ V A+ F+ G L+ + G
Sbjct: 140 -QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP-VSAVHFNRDGSLIVSSSYDG--LC 195
Query: 1208 FLFDMATGKLTKAKRLVVHEGSPVTSI 1288
++D A+G+ K L+ + PV+ +
Sbjct: 196 RIWDTASGQCLKT--LIDDDNPPVSFV 220
>ref|NP_081389.1| WD repeat-containing protein 5B [Mus musculus].
Length = 328
Score = 57.4 bits (137), Expect = 3e-08
Identities = 40/146 (27%), Positives = 69/146 (47%)
Frame = +2
Query: 848 RVLRGHTRGVSDFAWSLSNDILVSTSLDATMRIWASEDGRCIREIPDPDGAELLCCTFQP 1027
+ L GH+ +SD AWS + LVS S D T+++W G+C++ + + CC F P
Sbjct: 75 KTLYGHSLEISDVAWSSDSSRLVSASDDKTLKVWDMRSGKCLKTLKGHSDF-VFCCDFNP 133
Query: 1028 VNNNLTVVGNAKHNVHVMNIXXXXXXXXXXXXXXXRVLALSFDAPGRLLWAGDDRGSIFS 1207
+NL V G+ +V + + + A++F+ G L+ +G G
Sbjct: 134 -PSNLIVSGSFDESVKIWEVKTGKCLKTLSAHSDP-ISAVNFNCNGSLIVSGSYDG--LC 189
Query: 1208 FLFDMATGKLTKAKRLVVHEGSPVTS 1285
++D A+G + R + EG+P S
Sbjct: 190 RIWDAASG---QCLRTLADEGNPPVS 212
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 46,899,877
Number of extensions: 1185488
Number of successful extensions: 4894
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4874
Number of HSP's successfully gapped: 3
Length of query: 507
Length of database: 15,617,559
Length adjustment: 106
Effective length of query: 401
Effective length of database: 12,433,743
Effective search space: 4985930943
Effective search space used: 4985930943
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002956
(1522 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003360351.1| PREDICTED: WD repeat-containing protein 13-l... 421 e-118
Alignment gi|XP_003360350.1| PREDICTED: TBC1 domain family member 25-like... 169 4e-42
Alignment gi|XP_003353752.1| PREDICTED: WD repeat-containing protein 5 [S... 60 2e-09
Alignment gi|XP_003358840.1| PREDICTED: WD repeat-containing protein 5B-l... 57 4e-08
Alignment gi|XP_003132590.2| PREDICTED: f-box-like/WD repeat-containing p... 49 7e-06
>ref|XP_003360351.1| PREDICTED: WD repeat-containing protein 13-like, partial [Sus
scrofa].
Length = 357
Score = 421 bits (1081), Expect(2) = e-118
Identities = 212/231 (91%), Positives = 213/231 (92%)
Frame = +2
Query: 290 QFRTQYIRRRSQLLRENAKAGHPPAXXXXXXXXXXXXXXXXXXPLSEPGSARAYSNSIVR 469
+FRTQYIRRRSQLLRENAKAGHPPA PLSEPGSARAYSNSIVR
Sbjct: 127 EFRTQYIRRRSQLLRENAKAGHPPALRRQYLRLRGQLLGQRYGPLSEPGSARAYSNSIVR 186
Query: 470 SSRTTLDRMEDFEDDPRALGARGHRRSVSRGSYQLQAQMNRAVYEDRPPGSVVPTSAAEA 649
SSRTTLDRMEDFEDDPRALGARGHRRSVSRGSYQLQAQMNRAVYEDRPPGSVVPTSAAEA
Sbjct: 187 SSRTTLDRMEDFEDDPRALGARGHRRSVSRGSYQLQAQMNRAVYEDRPPGSVVPTSAAEA 246
Query: 650 SRAMAGDTSLSENYAFAGMYHVFDQHVDEAVPRVRFANDDRHRLACCSLDGSISLCQLVP 829
SRAMAGDTSLSENYAFAGMYHVFDQHVDEAVPRVRFANDDRHRLACCSLDGSISLCQLVP
Sbjct: 247 SRAMAGDTSLSENYAFAGMYHVFDQHVDEAVPRVRFANDDRHRLACCSLDGSISLCQLVP 306
Query: 830 APPTVLRVLRGHTRGVSDFAWSLSNDILVSTSLDATMRIWASEDGRCIREI 982
APPTVLRVLRGHTRGVSDFAWSLSNDILVSTSLDATMRIWASEDGRCIREI
Sbjct: 307 APPTVLRVLRGHTRGVSDFAWSLSNDILVSTSLDATMRIWASEDGRCIREI 357
Score = 24.6 bits (52), Expect(2) = e-118
Identities = 10/12 (83%), Positives = 11/12 (91%)
Frame = +1
Query: 229 VAAGFSSRCEIQ 264
VAAGFSSRCE +
Sbjct: 118 VAAGFSSRCEFR 129
>ref|XP_003360350.1| PREDICTED: TBC1 domain family member 25-like [Sus scrofa].
Length = 645
Score = 169 bits (428), Expect = 4e-42
Identities = 81/84 (96%), Positives = 82/84 (97%)
Frame = +2
Query: 740 VPRVRFANDDRHRLACCSLDGSISLCQLVPAPPTVLRVLRGHTRGVSDFAWSLSNDILVS 919
+PRVRFANDDRHRLACCSLDGSISLCQLVPAPPTVLRVLRGHTRGVSDFAWSLSNDILVS
Sbjct: 2 IPRVRFANDDRHRLACCSLDGSISLCQLVPAPPTVLRVLRGHTRGVSDFAWSLSNDILVS 61
Query: 920 TSLDATMRIWASEDGRCIREIPDP 991
TSLDATMRIWASEDGRCIREI P
Sbjct: 62 TSLDATMRIWASEDGRCIREIRRP 85
>ref|XP_003353752.1| PREDICTED: WD repeat-containing protein 5 [Sus scrofa].
Length = 334
Score = 60.5 bits (145), Expect = 2e-09
Identities = 40/147 (27%), Positives = 71/147 (48%)
Frame = +2
Query: 848 RVLRGHTRGVSDFAWSLSNDILVSTSLDATMRIWASEDGRCIREIPDPDGAELLCCTFQP 1027
+ + GH G+SD AWS +++LVS S D T++IW G+C++ + + CC F P
Sbjct: 81 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSN-YVFCCNFNP 139
Query: 1028 VNNNLTVVGNAKHNVHVMNIXXXXXXXXXXXXXXXRVLALSFDAPGRLLWAGDDRGSIFS 1207
+NL V G+ +V + ++ V A+ F+ G L+ + G
Sbjct: 140 -QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP-VSAVHFNRDGSLIVSSSYDG--LC 195
Query: 1208 FLFDMATGKLTKAKRLVVHEGSPVTSI 1288
++D A+G+ K L+ + PV+ +
Sbjct: 196 RIWDTASGQCLKT--LIDDDNPPVSFV 220
>ref|XP_003358840.1| PREDICTED: WD repeat-containing protein 5B-like [Sus scrofa].
Length = 330
Score = 56.6 bits (135), Expect = 4e-08
Identities = 40/147 (27%), Positives = 70/147 (47%)
Frame = +2
Query: 848 RVLRGHTRGVSDFAWSLSNDILVSTSLDATMRIWASEDGRCIREIPDPDGAELLCCTFQP 1027
+ L+GH+ +SD AWS + LVS S D T++IW G+C++ + + CC F P
Sbjct: 77 KALKGHSLEISDVAWSSDSGRLVSASDDKTLKIWDVRVGKCLKTLKGHSN-YVFCCNFNP 135
Query: 1028 VNNNLTVVGNAKHNVHVMNIXXXXXXXXXXXXXXXRVLALSFDAPGRLLWAGDDRGSIFS 1207
+NL + G+ +V + + V A+ F+ G L+ +G G
Sbjct: 136 -PSNLIISGSFDESVKIWEVKTGRCLKTLSAHSDP-VSAVHFNCKGSLIVSGSYDG--VC 191
Query: 1208 FLFDMATGKLTKAKRLVVHEGSPVTSI 1288
++D A+G+ K LV + P++ +
Sbjct: 192 RIWDAASGQCLKT--LVDDDNPPISFV 216
>ref|XP_003132590.2| PREDICTED: f-box-like/WD repeat-containing protein TBL1XR1-like
[Sus scrofa].
Length = 544
Score = 48.9 bits (115), Expect = 7e-06
Identities = 26/98 (26%), Positives = 47/98 (47%), Gaps = 8/98 (8%)
Frame = +2
Query: 713 VFDQHVDEAVPRVRFAN--------DDRHRLACCSLDGSISLCQLVPAPPTVLRVLRGHT 868
++D H EA + F + + A CS D I +C+L P ++ +GHT
Sbjct: 324 IWDAHTGEAKQQFPFHSAPALDVDWQSNNTFASCSTDMCIHVCKLGQDRP--IKTFQGHT 381
Query: 869 RGVSDFAWSLSNDILVSTSLDATMRIWASEDGRCIREI 982
V+ W + ++L S S D T++IW+ + C+ ++
Sbjct: 382 NEVNAIKWDPTGNLLASCSDDMTLKIWSMKQDNCVHDL 419
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 35,315,446
Number of extensions: 922332
Number of successful extensions: 4019
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 4008
Number of HSP's successfully gapped: 6
Length of query: 507
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 404
Effective length of database: 8,779,541
Effective search space: 3546934564
Effective search space used: 3546934564
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002956
(1522 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_ChrX 511 e-142
>Sscrofa_ChrX
|| Length = 144288218
Score = 511 bits (258), Expect = e-142
Identities = 258/258 (100%)
Strand = Plus / Plus
Query: 1 tcagggcactgcccgggaagggcaggactagggtgatgaccatgctaataaccgggtggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47610991 tcagggcactgcccgggaagggcaggactagggtgatgaccatgctaataaccgggtggg 47611050
Query: 61 atttcgcgacgtcctggcctggagggactcggtgtctaaggcaacgatcgcctggcggaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47611051 atttcgcgacgtcctggcctggagggactcggtgtctaaggcaacgatcgcctggcggaa 47611110
Query: 121 ggggcggaactagatctcttcacttgagacgctgactttccaggcccttgtcctgcaggc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47611111 ggggcggaactagatctcttcacttgagacgctgactttccaggcccttgtcctgcaggc 47611170
Query: 181 tcccgcgggcggacacgccggaagaggaggccggggaatggccgcggtgtggcagcaggt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47611171 tcccgcgggcggacacgccggaagaggaggccggggaatggccgcggtgtggcagcaggt 47611230
Query: 241 tttagcagtagatgcgag 258
||||||||||||||||||
Sbjct: 47611231 tttagcagtagatgcgag 47611248
Score = 488 bits (246), Expect = e-135
Identities = 246/246 (100%)
Strand = Plus / Plus
Query: 737 gcagtcccacgggtgcgcttcgccaacgacgaccggcaccgcctggcctgctgctcgctc 796
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47614671 gcagtcccacgggtgcgcttcgccaacgacgaccggcaccgcctggcctgctgctcgctc 47614730
Query: 797 gatggcagcatctcgctgtgccagctggtgcccgccccgcccaccgtgctccgcgtgctg 856
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47614731 gatggcagcatctcgctgtgccagctggtgcccgccccgcccaccgtgctccgcgtgctg 47614790
Query: 857 cggggccacacgcggggtgtctccgacttcgcctggtccctctccaatgacatcctcgtg 916
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47614791 cggggccacacgcggggtgtctccgacttcgcctggtccctctccaatgacatcctcgtg 47614850
Query: 917 tccacctctctcgatgccaccatgcgcatctgggcctctgaggatggccgctgcatccgg 976
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47614851 tccacctctctcgatgccaccatgcgcatctgggcctctgaggatggccgctgcatccgg 47614910
Query: 977 gagatc 982
||||||
Sbjct: 47614911 gagatc 47614916
Score = 484 bits (244), Expect = e-134
Identities = 244/244 (100%)
Strand = Plus / Plus
Query: 257 agatacaacgcataccgcacaccaacgtttccacagtttcggacgcagtatatccggcgg 316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47611936 agatacaacgcataccgcacaccaacgtttccacagtttcggacgcagtatatccggcgg 47611995
Query: 317 cgcagccagctactgcgggagaatgccaaggctgggcaccctccagcattgcgtcggcag 376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47611996 cgcagccagctactgcgggagaatgccaaggctgggcaccctccagcattgcgtcggcag 47612055
Query: 377 tacctgaggctgcgtgggcagctgctgggccagcgctacgggcccctctccgagccaggc 436
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47612056 tacctgaggctgcgtgggcagctgctgggccagcgctacgggcccctctccgagccaggc 47612115
Query: 437 agtgctcgtgcctatagcaacagcatcgtccgcagcagccgcactacccttgaccgcatg 496
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47612116 agtgctcgtgcctatagcaacagcatcgtccgcagcagccgcactacccttgaccgcatg 47612175
Query: 497 gagg 500
||||
Sbjct: 47612176 gagg 47612179
Score = 264 bits (133), Expect = 1e-67
Identities = 133/133 (100%)
Strand = Plus / Plus
Query: 608 aggccccccggcagcgtggtgcccacgtcagcggcagaagcaagtcgagccatggccggg 667
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47613686 aggccccccggcagcgtggtgcccacgtcagcggcagaagcaagtcgagccatggccggg 47613745
Query: 668 gacacatcgctgagcgagaactatgcctttgcgggcatgtaccatgtttttgaccaacac 727
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47613746 gacacatcgctgagcgagaactatgcctttgcgggcatgtaccatgtttttgaccaacac 47613805
Query: 728 gtggatgaggcag 740
|||||||||||||
Sbjct: 47613806 gtggatgaggcag 47613818
Score = 224 bits (113), Expect = 1e-55
Identities = 113/113 (100%)
Strand = Plus / Plus
Query: 498 aggacttcgaggatgatcctcgggctctgggggcccgtgggcaccgccgttctgtcagcc 557
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47613458 aggacttcgaggatgatcctcgggctctgggggcccgtgggcaccgccgttctgtcagcc 47613517
Query: 558 gcggctcctaccagctgcaagcacagatgaaccgtgctgtctatgaggacagg 610
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47613518 gcggctcctaccagctgcaagcacagatgaaccgtgctgtctatgaggacagg 47613570
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 32,248,260
Number of extensions: 152
Number of successful extensions: 152
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 152
Number of HSP's successfully gapped: 5
Length of query: 1522
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1501
Effective length of database: 2,808,413,156
Effective search space: 4215428147156
Effective search space used: 4215428147156
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)