Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002963
(1603 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001076922.1| vacuolar protein sorting-associated protein ... 919 0.0
>ref|NP_001076922.1| vacuolar protein sorting-associated protein 41 homolog [Bos taurus].
Length = 854
Score = 919 bits (2375), Expect = 0.0
Identities = 452/471 (95%), Positives = 461/471 (97%)
Frame = +1
Query: 37 ISQKNIKRHKILDIGLAYINHLVEKGEYDAAARKCQKILGKNAALWEYEVYKFKEIGQLK 216
ISQKNIKRHKILDIGLAYINHLV +GEYD AARKCQKILGKNAALWEYEVYKFKEIGQLK
Sbjct: 384 ISQKNIKRHKILDIGLAYINHLVARGEYDIAARKCQKILGKNAALWEYEVYKFKEIGQLK 443
Query: 217 AISPYLPRGDPVLKPLIYEMTLHEFLESDYEGFATLIREWPGDLYNNSVIVQAVRGHLKK 396
AISPYLPRGDPVLKPLIYEM LHEFLESDYEGFATLIREWPGDLYNNSVIVQAVR HLKK
Sbjct: 444 AISPYLPRGDPVLKPLIYEMILHEFLESDYEGFATLIREWPGDLYNNSVIVQAVRDHLKK 503
Query: 397 DSQNRTLLKTLAELYTYDKNYSSALEIYLTLRHKDAFQLIHKHNLFSSIKDKIVLLMDFD 576
DSQNRTLLKTLAELYTYDKNY +ALEIYLTLRHKD FQLIHKHNLFSSIKDKIVLLMDFD
Sbjct: 504 DSQNRTLLKTLAELYTYDKNYGNALEIYLTLRHKDVFQLIHKHNLFSSIKDKIVLLMDFD 563
Query: 577 SEKAVDMLLDNEDKISIKKVVEELEDRPELQHVYLHKLFRRDHRKGQRYHEKQISLYAEY 756
SEKAVDMLLDNEDKISIKKVVEELEDRPELQHVYLHKLF+RDH KGQRYHEKQISLYAE+
Sbjct: 564 SEKAVDMLLDNEDKISIKKVVEELEDRPELQHVYLHKLFKRDHHKGQRYHEKQISLYAEF 623
Query: 757 DRPNLLPFLRDSIHCPLEKALEICQQRNFVEETVYLLSRMGNSRSALKMITQELQDVDKA 936
DRPNLLPFLRDSIHCPLEKALEICQQRNFVEETVYLLSRMGNSRSALKMI +EL DVDKA
Sbjct: 624 DRPNLLPFLRDSIHCPLEKALEICQQRNFVEETVYLLSRMGNSRSALKMIMEELHDVDKA 683
Query: 937 IEFAKEQDDGELWEDLILYSIDKPPFITGLLNNIGTHVDPILLIHRIKEGMEIPNLRDSL 1116
IEFAKEQDD ELWEDLILYSIDKPPFITGLLNNIGTHVDPILLIHRIKEGMEIPNLRDSL
Sbjct: 684 IEFAKEQDDAELWEDLILYSIDKPPFITGLLNNIGTHVDPILLIHRIKEGMEIPNLRDSL 743
Query: 1117 VKILQDYNLQILLREGCKKILVADSLSLLKKMHRTQMKGVLVDEENICESCLSPVLPSDA 1296
VKILQDYNLQILLREGCKKILVADSLSLLKKMHRTQMKG+LVDEENICESCLSP+LPSDA
Sbjct: 744 VKILQDYNLQILLREGCKKILVADSLSLLKKMHRTQMKGILVDEENICESCLSPILPSDA 803
Query: 1297 AKPFSVVVFHCRHMFHKECLPVPSMSSPAQFCNICSAKHRGPGSAILEMKK 1449
AKPFS+VVFHCRHMFHKECLPVPSM+SPAQFCNICSAKHRGPGSAILEMKK
Sbjct: 804 AKPFSMVVFHCRHMFHKECLPVPSMTSPAQFCNICSAKHRGPGSAILEMKK 854
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 57,026,672
Number of extensions: 1523350
Number of successful extensions: 6536
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6493
Number of HSP's successfully gapped: 1
Length of query: 534
Length of database: 17,681,374
Length adjustment: 107
Effective length of query: 427
Effective length of database: 14,140,958
Effective search space: 6038189066
Effective search space used: 6038189066
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002963
(1603 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_533084.2| PREDICTED: similar to Vacuolar assembly protein... 918 0.0
>ref|XP_533084.2| PREDICTED: similar to Vacuolar assembly protein VPS41 homolog (S53)
[Canis familiaris].
Length = 854
Score = 918 bits (2373), Expect = 0.0
Identities = 453/471 (96%), Positives = 459/471 (97%)
Frame = +1
Query: 37 ISQKNIKRHKILDIGLAYINHLVEKGEYDAAARKCQKILGKNAALWEYEVYKFKEIGQLK 216
ISQKNIKRHKILDIGLAYINHLVEKG+YD AARKCQKILGKN ALWE EVYKFKEIGQLK
Sbjct: 384 ISQKNIKRHKILDIGLAYINHLVEKGDYDIAARKCQKILGKNTALWECEVYKFKEIGQLK 443
Query: 217 AISPYLPRGDPVLKPLIYEMTLHEFLESDYEGFATLIREWPGDLYNNSVIVQAVRGHLKK 396
AISPYLPRGDP+LKPLIYEM LHEFLESDYEGFATLIREWPGDLYNNSVIVQAVR HLKK
Sbjct: 444 AISPYLPRGDPILKPLIYEMILHEFLESDYEGFATLIREWPGDLYNNSVIVQAVRDHLKK 503
Query: 397 DSQNRTLLKTLAELYTYDKNYSSALEIYLTLRHKDAFQLIHKHNLFSSIKDKIVLLMDFD 576
DSQNRTLLKTLAELYTYDKNY +ALEIYLTLRHKD FQLIHKHNLFSSIKDKIVLLMDFD
Sbjct: 504 DSQNRTLLKTLAELYTYDKNYGNALEIYLTLRHKDVFQLIHKHNLFSSIKDKIVLLMDFD 563
Query: 577 SEKAVDMLLDNEDKISIKKVVEELEDRPELQHVYLHKLFRRDHRKGQRYHEKQISLYAEY 756
SEKAVDMLLDNEDKISIKKVVEELEDRPELQHVYLHKLF+RDH KGQRYHEKQISLYAEY
Sbjct: 564 SEKAVDMLLDNEDKISIKKVVEELEDRPELQHVYLHKLFKRDHHKGQRYHEKQISLYAEY 623
Query: 757 DRPNLLPFLRDSIHCPLEKALEICQQRNFVEETVYLLSRMGNSRSALKMITQELQDVDKA 936
DRPNLLPFLRDS HCPLEKALEICQQRNFVEETVYLLSRMGNSRSALKMI +EL DVDKA
Sbjct: 624 DRPNLLPFLRDSTHCPLEKALEICQQRNFVEETVYLLSRMGNSRSALKMIMEELHDVDKA 683
Query: 937 IEFAKEQDDGELWEDLILYSIDKPPFITGLLNNIGTHVDPILLIHRIKEGMEIPNLRDSL 1116
IEFAKEQDDGELWEDLILYSIDKPPFITGLLNNIGTHVDPILLIHRIKEGMEIPNLRDSL
Sbjct: 684 IEFAKEQDDGELWEDLILYSIDKPPFITGLLNNIGTHVDPILLIHRIKEGMEIPNLRDSL 743
Query: 1117 VKILQDYNLQILLREGCKKILVADSLSLLKKMHRTQMKGVLVDEENICESCLSPVLPSDA 1296
VKILQDYNLQILLREGCKKILVADSLSLLKKMHRTQMKGVLVDEENICESCLSP+LPSDA
Sbjct: 744 VKILQDYNLQILLREGCKKILVADSLSLLKKMHRTQMKGVLVDEENICESCLSPILPSDA 803
Query: 1297 AKPFSVVVFHCRHMFHKECLPVPSMSSPAQFCNICSAKHRGPGSAILEMKK 1449
AKPFSVVVFHCRHMFHKECLPVPSMSSPAQFC ICSAKHRGPGSAILEMKK
Sbjct: 804 AKPFSVVVFHCRHMFHKECLPVPSMSSPAQFCGICSAKHRGPGSAILEMKK 854
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 59,555,436
Number of extensions: 1574118
Number of successful extensions: 6550
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6532
Number of HSP's successfully gapped: 1
Length of query: 534
Length of database: 18,874,504
Length adjustment: 108
Effective length of query: 426
Effective length of database: 15,274,216
Effective search space: 6506816016
Effective search space used: 6506816016
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002963
(1603 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_542198.2| vacuolar protein sorting-associated protein 41 ... 915 0.0
Alignment gi|NP_055211.2| vacuolar protein sorting-associated protein 41 ... 915 0.0
>ref|NP_542198.2| vacuolar protein sorting-associated protein 41 homolog isoform 2
[Homo sapiens].
Length = 829
Score = 915 bits (2366), Expect = 0.0
Identities = 451/471 (95%), Positives = 461/471 (97%)
Frame = +1
Query: 37 ISQKNIKRHKILDIGLAYINHLVEKGEYDAAARKCQKILGKNAALWEYEVYKFKEIGQLK 216
ISQKNIKRHKILDIGLAYINHLVE+G+YD AARKCQKILGKNAALWEYEVYKFKEIGQLK
Sbjct: 359 ISQKNIKRHKILDIGLAYINHLVERGDYDIAARKCQKILGKNAALWEYEVYKFKEIGQLK 418
Query: 217 AISPYLPRGDPVLKPLIYEMTLHEFLESDYEGFATLIREWPGDLYNNSVIVQAVRGHLKK 396
AISPYLPRGDPVLKPLIYEM LHEFLESDYEGFATLIREWPGDLYNNSVIVQAVR HLKK
Sbjct: 419 AISPYLPRGDPVLKPLIYEMILHEFLESDYEGFATLIREWPGDLYNNSVIVQAVRDHLKK 478
Query: 397 DSQNRTLLKTLAELYTYDKNYSSALEIYLTLRHKDAFQLIHKHNLFSSIKDKIVLLMDFD 576
DSQN+TLLKTLAELYTYDKNY +ALEIYLTLRHKD FQLIHKHNLFSSIKDKIVLLMDFD
Sbjct: 479 DSQNKTLLKTLAELYTYDKNYGNALEIYLTLRHKDVFQLIHKHNLFSSIKDKIVLLMDFD 538
Query: 577 SEKAVDMLLDNEDKISIKKVVEELEDRPELQHVYLHKLFRRDHRKGQRYHEKQISLYAEY 756
SEKAVDMLLDNEDKISIKKVVEELEDRPELQHVYLHKLF+RDH KGQRYHEKQISLYAEY
Sbjct: 539 SEKAVDMLLDNEDKISIKKVVEELEDRPELQHVYLHKLFKRDHHKGQRYHEKQISLYAEY 598
Query: 757 DRPNLLPFLRDSIHCPLEKALEICQQRNFVEETVYLLSRMGNSRSALKMITQELQDVDKA 936
DRPNLLPFLRDS HCPLEKALEICQQRNFVEETVYLLSRMGNSRSALKMI +EL DVDKA
Sbjct: 599 DRPNLLPFLRDSTHCPLEKALEICQQRNFVEETVYLLSRMGNSRSALKMIMEELHDVDKA 658
Query: 937 IEFAKEQDDGELWEDLILYSIDKPPFITGLLNNIGTHVDPILLIHRIKEGMEIPNLRDSL 1116
IEFAKEQDDGELWEDLILYSIDKPPFITGLLNNIGTHVDPILLIHRIKEGMEIPNLRDSL
Sbjct: 659 IEFAKEQDDGELWEDLILYSIDKPPFITGLLNNIGTHVDPILLIHRIKEGMEIPNLRDSL 718
Query: 1117 VKILQDYNLQILLREGCKKILVADSLSLLKKMHRTQMKGVLVDEENICESCLSPVLPSDA 1296
VKILQDYNLQILLREGCKKILVADSLSLLKKMHRTQMKGVLVDEENICESCLSP+LPSDA
Sbjct: 719 VKILQDYNLQILLREGCKKILVADSLSLLKKMHRTQMKGVLVDEENICESCLSPILPSDA 778
Query: 1297 AKPFSVVVFHCRHMFHKECLPVPSMSSPAQFCNICSAKHRGPGSAILEMKK 1449
AKPFSVVVFHCRHMFHKECLP+PSM+S AQFCNICSAK+RGPGSAILEMKK
Sbjct: 779 AKPFSVVVFHCRHMFHKECLPMPSMNSAAQFCNICSAKNRGPGSAILEMKK 829
>ref|NP_055211.2| vacuolar protein sorting-associated protein 41 homolog isoform 1
[Homo sapiens].
Length = 854
Score = 915 bits (2366), Expect = 0.0
Identities = 451/471 (95%), Positives = 461/471 (97%)
Frame = +1
Query: 37 ISQKNIKRHKILDIGLAYINHLVEKGEYDAAARKCQKILGKNAALWEYEVYKFKEIGQLK 216
ISQKNIKRHKILDIGLAYINHLVE+G+YD AARKCQKILGKNAALWEYEVYKFKEIGQLK
Sbjct: 384 ISQKNIKRHKILDIGLAYINHLVERGDYDIAARKCQKILGKNAALWEYEVYKFKEIGQLK 443
Query: 217 AISPYLPRGDPVLKPLIYEMTLHEFLESDYEGFATLIREWPGDLYNNSVIVQAVRGHLKK 396
AISPYLPRGDPVLKPLIYEM LHEFLESDYEGFATLIREWPGDLYNNSVIVQAVR HLKK
Sbjct: 444 AISPYLPRGDPVLKPLIYEMILHEFLESDYEGFATLIREWPGDLYNNSVIVQAVRDHLKK 503
Query: 397 DSQNRTLLKTLAELYTYDKNYSSALEIYLTLRHKDAFQLIHKHNLFSSIKDKIVLLMDFD 576
DSQN+TLLKTLAELYTYDKNY +ALEIYLTLRHKD FQLIHKHNLFSSIKDKIVLLMDFD
Sbjct: 504 DSQNKTLLKTLAELYTYDKNYGNALEIYLTLRHKDVFQLIHKHNLFSSIKDKIVLLMDFD 563
Query: 577 SEKAVDMLLDNEDKISIKKVVEELEDRPELQHVYLHKLFRRDHRKGQRYHEKQISLYAEY 756
SEKAVDMLLDNEDKISIKKVVEELEDRPELQHVYLHKLF+RDH KGQRYHEKQISLYAEY
Sbjct: 564 SEKAVDMLLDNEDKISIKKVVEELEDRPELQHVYLHKLFKRDHHKGQRYHEKQISLYAEY 623
Query: 757 DRPNLLPFLRDSIHCPLEKALEICQQRNFVEETVYLLSRMGNSRSALKMITQELQDVDKA 936
DRPNLLPFLRDS HCPLEKALEICQQRNFVEETVYLLSRMGNSRSALKMI +EL DVDKA
Sbjct: 624 DRPNLLPFLRDSTHCPLEKALEICQQRNFVEETVYLLSRMGNSRSALKMIMEELHDVDKA 683
Query: 937 IEFAKEQDDGELWEDLILYSIDKPPFITGLLNNIGTHVDPILLIHRIKEGMEIPNLRDSL 1116
IEFAKEQDDGELWEDLILYSIDKPPFITGLLNNIGTHVDPILLIHRIKEGMEIPNLRDSL
Sbjct: 684 IEFAKEQDDGELWEDLILYSIDKPPFITGLLNNIGTHVDPILLIHRIKEGMEIPNLRDSL 743
Query: 1117 VKILQDYNLQILLREGCKKILVADSLSLLKKMHRTQMKGVLVDEENICESCLSPVLPSDA 1296
VKILQDYNLQILLREGCKKILVADSLSLLKKMHRTQMKGVLVDEENICESCLSP+LPSDA
Sbjct: 744 VKILQDYNLQILLREGCKKILVADSLSLLKKMHRTQMKGVLVDEENICESCLSPILPSDA 803
Query: 1297 AKPFSVVVFHCRHMFHKECLPVPSMSSPAQFCNICSAKHRGPGSAILEMKK 1449
AKPFSVVVFHCRHMFHKECLP+PSM+S AQFCNICSAK+RGPGSAILEMKK
Sbjct: 804 AKPFSVVVFHCRHMFHKECLPMPSMNSAAQFCNICSAKNRGPGSAILEMKK 854
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 58,547,872
Number of extensions: 1559874
Number of successful extensions: 6542
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 6494
Number of HSP's successfully gapped: 2
Length of query: 534
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 427
Effective length of database: 14,770,016
Effective search space: 6306796832
Effective search space used: 6306796832
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002963
(1603 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_742118.3| vacuolar protein sorting-associated protein 41 ... 914 0.0
>ref|NP_742118.3| vacuolar protein sorting-associated protein 41 homolog [Mus
musculus].
Length = 853
Score = 914 bits (2361), Expect = 0.0
Identities = 447/471 (94%), Positives = 462/471 (98%)
Frame = +1
Query: 37 ISQKNIKRHKILDIGLAYINHLVEKGEYDAAARKCQKILGKNAALWEYEVYKFKEIGQLK 216
ISQ+NIKRHKILDIGLAY+NHLVE+GEYD AARKCQKILGKNA+LWEYEVYKFKEIGQLK
Sbjct: 383 ISQRNIKRHKILDIGLAYVNHLVERGEYDMAARKCQKILGKNASLWEYEVYKFKEIGQLK 442
Query: 217 AISPYLPRGDPVLKPLIYEMTLHEFLESDYEGFATLIREWPGDLYNNSVIVQAVRGHLKK 396
AISPYLPRGDPVLKPLIYEM LHEFLESDYEGFATLIREWPGDLYNNSVIVQAVR HLKK
Sbjct: 443 AISPYLPRGDPVLKPLIYEMILHEFLESDYEGFATLIREWPGDLYNNSVIVQAVRDHLKK 502
Query: 397 DSQNRTLLKTLAELYTYDKNYSSALEIYLTLRHKDAFQLIHKHNLFSSIKDKIVLLMDFD 576
DSQN+TLLKTLAELYTYDKNY +ALEIYLTLRHKD FQLIHKHNLFSSIKDKIVLLMDFD
Sbjct: 503 DSQNKTLLKTLAELYTYDKNYGNALEIYLTLRHKDVFQLIHKHNLFSSIKDKIVLLMDFD 562
Query: 577 SEKAVDMLLDNEDKISIKKVVEELEDRPELQHVYLHKLFRRDHRKGQRYHEKQISLYAEY 756
SEKAVDMLLDNEDKISIKKVVEELEDRPELQHVYLHKLF+RDH KGQRYHEKQISLYAEY
Sbjct: 563 SEKAVDMLLDNEDKISIKKVVEELEDRPELQHVYLHKLFKRDHHKGQRYHEKQISLYAEY 622
Query: 757 DRPNLLPFLRDSIHCPLEKALEICQQRNFVEETVYLLSRMGNSRSALKMITQELQDVDKA 936
DRPNLLPFLRDS HCPLEKALEICQQRNFVEETVYLLSRMGNSRSALKMI +EL DVDKA
Sbjct: 623 DRPNLLPFLRDSTHCPLEKALEICQQRNFVEETVYLLSRMGNSRSALKMIMEELHDVDKA 682
Query: 937 IEFAKEQDDGELWEDLILYSIDKPPFITGLLNNIGTHVDPILLIHRIKEGMEIPNLRDSL 1116
IEFAKEQDDGELWEDLILYSIDKPPFITGLLNNIGTHVDPILLIHRIKEGMEIPNLRDSL
Sbjct: 683 IEFAKEQDDGELWEDLILYSIDKPPFITGLLNNIGTHVDPILLIHRIKEGMEIPNLRDSL 742
Query: 1117 VKILQDYNLQILLREGCKKILVADSLSLLKKMHRTQMKGVLVDEENICESCLSPVLPSDA 1296
VKILQDYNLQILLREGCKKILVADSLSLLKKMHRTQMKGVLVDEENICESCLSP+LP+DA
Sbjct: 743 VKILQDYNLQILLREGCKKILVADSLSLLKKMHRTQMKGVLVDEENICESCLSPILPTDA 802
Query: 1297 AKPFSVVVFHCRHMFHKECLPVPSMSSPAQFCNICSAKHRGPGSAILEMKK 1449
AKPFSVVVFHCRHMFHKECLP+PSM++PAQ+CNICSAK+RGPGSAILEMKK
Sbjct: 803 AKPFSVVVFHCRHMFHKECLPMPSMNAPAQYCNICSAKNRGPGSAILEMKK 853
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 49,908,880
Number of extensions: 1321023
Number of successful extensions: 5376
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5349
Number of HSP's successfully gapped: 1
Length of query: 534
Length of database: 15,617,559
Length adjustment: 106
Effective length of query: 428
Effective length of database: 12,433,743
Effective search space: 5321642004
Effective search space used: 5321642004
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002963
(1603 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003134954.2| PREDICTED: vacuolar protein sorting-associat... 949 0.0
>ref|XP_003134954.2| PREDICTED: vacuolar protein sorting-associated protein 41 homolog,
partial [Sus scrofa].
Length = 834
Score = 949 bits (2453), Expect = 0.0
Identities = 471/471 (100%), Positives = 471/471 (100%)
Frame = +1
Query: 37 ISQKNIKRHKILDIGLAYINHLVEKGEYDAAARKCQKILGKNAALWEYEVYKFKEIGQLK 216
ISQKNIKRHKILDIGLAYINHLVEKGEYDAAARKCQKILGKNAALWEYEVYKFKEIGQLK
Sbjct: 364 ISQKNIKRHKILDIGLAYINHLVEKGEYDAAARKCQKILGKNAALWEYEVYKFKEIGQLK 423
Query: 217 AISPYLPRGDPVLKPLIYEMTLHEFLESDYEGFATLIREWPGDLYNNSVIVQAVRGHLKK 396
AISPYLPRGDPVLKPLIYEMTLHEFLESDYEGFATLIREWPGDLYNNSVIVQAVRGHLKK
Sbjct: 424 AISPYLPRGDPVLKPLIYEMTLHEFLESDYEGFATLIREWPGDLYNNSVIVQAVRGHLKK 483
Query: 397 DSQNRTLLKTLAELYTYDKNYSSALEIYLTLRHKDAFQLIHKHNLFSSIKDKIVLLMDFD 576
DSQNRTLLKTLAELYTYDKNYSSALEIYLTLRHKDAFQLIHKHNLFSSIKDKIVLLMDFD
Sbjct: 484 DSQNRTLLKTLAELYTYDKNYSSALEIYLTLRHKDAFQLIHKHNLFSSIKDKIVLLMDFD 543
Query: 577 SEKAVDMLLDNEDKISIKKVVEELEDRPELQHVYLHKLFRRDHRKGQRYHEKQISLYAEY 756
SEKAVDMLLDNEDKISIKKVVEELEDRPELQHVYLHKLFRRDHRKGQRYHEKQISLYAEY
Sbjct: 544 SEKAVDMLLDNEDKISIKKVVEELEDRPELQHVYLHKLFRRDHRKGQRYHEKQISLYAEY 603
Query: 757 DRPNLLPFLRDSIHCPLEKALEICQQRNFVEETVYLLSRMGNSRSALKMITQELQDVDKA 936
DRPNLLPFLRDSIHCPLEKALEICQQRNFVEETVYLLSRMGNSRSALKMITQELQDVDKA
Sbjct: 604 DRPNLLPFLRDSIHCPLEKALEICQQRNFVEETVYLLSRMGNSRSALKMITQELQDVDKA 663
Query: 937 IEFAKEQDDGELWEDLILYSIDKPPFITGLLNNIGTHVDPILLIHRIKEGMEIPNLRDSL 1116
IEFAKEQDDGELWEDLILYSIDKPPFITGLLNNIGTHVDPILLIHRIKEGMEIPNLRDSL
Sbjct: 664 IEFAKEQDDGELWEDLILYSIDKPPFITGLLNNIGTHVDPILLIHRIKEGMEIPNLRDSL 723
Query: 1117 VKILQDYNLQILLREGCKKILVADSLSLLKKMHRTQMKGVLVDEENICESCLSPVLPSDA 1296
VKILQDYNLQILLREGCKKILVADSLSLLKKMHRTQMKGVLVDEENICESCLSPVLPSDA
Sbjct: 724 VKILQDYNLQILLREGCKKILVADSLSLLKKMHRTQMKGVLVDEENICESCLSPVLPSDA 783
Query: 1297 AKPFSVVVFHCRHMFHKECLPVPSMSSPAQFCNICSAKHRGPGSAILEMKK 1449
AKPFSVVVFHCRHMFHKECLPVPSMSSPAQFCNICSAKHRGPGSAILEMKK
Sbjct: 784 AKPFSVVVFHCRHMFHKECLPVPSMSSPAQFCNICSAKHRGPGSAILEMKK 834
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 36,662,523
Number of extensions: 978750
Number of successful extensions: 4280
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4254
Number of HSP's successfully gapped: 1
Length of query: 534
Length of database: 11,343,932
Length adjustment: 104
Effective length of query: 430
Effective length of database: 8,754,644
Effective search space: 3764496920
Effective search space used: 3764496920
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002963
(1603 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr18 432 e-118
Sscrofa_Chr09 98 2e-17
Sscrofa_Chr17 88 2e-14
>Sscrofa_Chr18
|| Length = 61220071
Score = 432 bits (218), Expect = e-118
Identities = 231/234 (98%), Gaps = 1/234 (0%)
Strand = Plus / Plus
Query: 1371 gagctcccctgcacagttctgcaacatctgcagcgccaagcaccggggcccgggaagtgc 1430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60729449 gagctcccctgcacagttctgcaacatctgcagcgccaagcaccggggcccgggaagtgc 60729508
Query: 1431 cattttggagatgaaaaaatagctccttctgtgtgtccgcctcgtcctcgctgctctgaa 1490
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60729509 cattttggagatgaaaaaatagctccttctgtgtgtccgcctcgtcctcgctgctctgaa 60729568
Query: 1491 gacggtttttgcagcaa-cgaagcttttgttgacgccagtgcccttgaaagatttgtgca 1549
||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct: 60729569 gacggtttttgcagcaaccgaagcttttgttgacgccagtgcccttgagagatttgtgca 60729628
Query: 1550 cgtgtgtgtcctgctggagaaaagctgcttcctcttctgtctcttaaatgtttc 1603
|||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 60729629 cgtgtgtgtcctgctggagaaaagctgcttcctcttctgtctcttagatgtttc 60729682
Score = 287 bits (145), Expect = 9e-75
Identities = 145/145 (100%)
Strand = Plus / Plus
Query: 438 gtacacctatgacaagaactacagcagcgccttggagatatacctaaccttaagacacaa 497
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60705199 gtacacctatgacaagaactacagcagcgccttggagatatacctaaccttaagacacaa 60705258
Query: 498 ggacgccttccagctgatccacaagcataaccttttcagttctatcaaggataaaattgt 557
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60705259 ggacgccttccagctgatccacaagcataaccttttcagttctatcaaggataaaattgt 60705318
Query: 558 tttactaatggattttgattccgag 582
|||||||||||||||||||||||||
Sbjct: 60705319 tttactaatggattttgattccgag 60705343
Score = 280 bits (141), Expect = 2e-72
Identities = 141/141 (100%)
Strand = Plus / Plus
Query: 869 gccgcatgggcaacagccggagcgccctgaagatgatcacgcaggagctgcaggacgtcg 928
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60718327 gccgcatgggcaacagccggagcgccctgaagatgatcacgcaggagctgcaggacgtcg 60718386
Query: 929 acaaagccatcgaattcgccaaggagcaggacgacggggagctctgggaagacctgattt 988
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60718387 acaaagccatcgaattcgccaaggagcaggacgacggggagctctgggaagacctgattt 60718446
Query: 989 tatattccatcgacaagccac 1009
|||||||||||||||||||||
Sbjct: 60718447 tatattccatcgacaagccac 60718467
Score = 278 bits (140), Expect = 9e-72
Identities = 140/140 (100%)
Strand = Plus / Plus
Query: 675 gtatctgcacaagcttttccggagagaccatcgtaaggggcagcgctaccacgagaagca 734
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60709802 gtatctgcacaagcttttccggagagaccatcgtaaggggcagcgctaccacgagaagca 60709861
Query: 735 gatcagcctctacgccgaatacgaccgtccgaacctgctcccgtttctccgagacagcat 794
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60709862 gatcagcctctacgccgaatacgaccgtccgaacctgctcccgtttctccgagacagcat 60709921
Query: 795 ccactgccccctggagaagg 814
||||||||||||||||||||
Sbjct: 60709922 ccactgccccctggagaagg 60709941
Score = 272 bits (137), Expect = 6e-70
Identities = 137/137 (100%)
Strand = Plus / Plus
Query: 1010 cgtttatcaccggcttgctgaataacatcggcacccatgttgacccaattctcctgattc 1069
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60720081 cgtttatcaccggcttgctgaataacatcggcacccatgttgacccaattctcctgattc 60720140
Query: 1070 accgtattaaggaagggatggagattcctaacctgagagactccttggtcaaaatcctgc 1129
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60720141 accgtattaaggaagggatggagattcctaacctgagagactccttggtcaaaatcctgc 60720200
Query: 1130 aagactacaatttgcag 1146
|||||||||||||||||
Sbjct: 60720201 aagactacaatttgcag 60720217
Score = 262 bits (132), Expect = 5e-67
Identities = 132/132 (100%)
Strand = Plus / Plus
Query: 308 agggttttgccacgctgatccgggaatggcctggagatctgtacaacaactcggtaatcg 367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60702395 agggttttgccacgctgatccgggaatggcctggagatctgtacaacaactcggtaatcg 60702454
Query: 368 ttcaggcagttcggggtcacctgaagaaagacagtcagaacaggactctacttaaaaccc 427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60702455 ttcaggcagttcggggtcacctgaagaaagacagtcagaacaggactctacttaaaaccc 60702514
Query: 428 tagcagaactgt 439
||||||||||||
Sbjct: 60702515 tagcagaactgt 60702526
Score = 202 bits (102), Expect = 4e-49
Identities = 102/102 (100%)
Strand = Plus / Plus
Query: 1145 agattctgcttcgtgaaggctgcaagaagattctggtcgccgactctttgtccttactaa 1204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60726759 agattctgcttcgtgaaggctgcaagaagattctggtcgccgactctttgtccttactaa 60726818
Query: 1205 agaagatgcaccgaacccagatgaaaggcgtcctggtggatg 1246
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60726819 agaagatgcaccgaacccagatgaaaggcgtcctggtggatg 60726860
Score = 190 bits (96), Expect = 2e-45
Identities = 96/96 (100%)
Strand = Plus / Plus
Query: 215 aggctattagtccttatttgccaagaggggatccagttctgaaaccactcatctatgaaa 274
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60699718 aggctattagtccttatttgccaagaggggatccagttctgaaaccactcatctatgaaa 60699777
Query: 275 tgaccctccatgaatttttggaaagtgattatgagg 310
||||||||||||||||||||||||||||||||||||
Sbjct: 60699778 tgaccctccatgaatttttggaaagtgattatgagg 60699813
Score = 167 bits (84), Expect = 2e-38
Identities = 84/84 (100%)
Strand = Plus / Plus
Query: 134 gcaaatgccagaaaattcttgggaaaaatgcagcactctgggaatatgaagtttataaat 193
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60697209 gcaaatgccagaaaattcttgggaaaaatgcagcactctgggaatatgaagtttataaat 60697268
Query: 194 ttaaagaaattggacagcttaagg 217
||||||||||||||||||||||||
Sbjct: 60697269 ttaaagaaattggacagcttaagg 60697292
Score = 163 bits (82), Expect = 4e-37
Identities = 82/82 (100%)
Strand = Plus / Plus
Query: 1290 agacgcggccaagcccttcagcgtggtggtcttccactgccggcacatgttccacaagga 1349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60728801 agacgcggccaagcccttcagcgtggtggtcttccactgccggcacatgttccacaagga 60728860
Query: 1350 gtgcctgcccgtgcccagcatg 1371
||||||||||||||||||||||
Sbjct: 60728861 gtgcctgcccgtgcccagcatg 60728882
Score = 125 bits (63), Expect = 8e-26
Identities = 63/63 (100%)
Strand = Plus / Plus
Query: 72 ggacatcggcttggcctacatcaaccacctggtggagaagggggagtacgacgcagcggc 131
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60695493 ggacatcggcttggcctacatcaaccacctggtggagaagggggagtacgacgcagcggc 60695552
Query: 132 acg 134
|||
Sbjct: 60695553 acg 60695555
Score = 119 bits (60), Expect = 5e-24
Identities = 60/60 (100%)
Strand = Plus / Plus
Query: 14 aggaagctctgatggcagctgaaatcagccaaaagaacattaaaagacataagattctgg 73
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60693246 aggaagctctgatggcagctgaaatcagccaaaagaacattaaaagacataagattctgg 60693305
Score = 115 bits (58), Expect = 8e-23
Identities = 58/58 (100%)
Strand = Plus / Plus
Query: 812 aggctcttgagatctgtcaacagaggaactttgtggaagagacagtttatcttctgag 869
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60717574 aggctcttgagatctgtcaacagaggaactttgtggaagagacagtttatcttctgag 60717631
Score = 101 bits (51), Expect = 1e-18
Identities = 51/51 (100%)
Strand = Plus / Plus
Query: 625 attaaaaaggttgtggaagaattggaagacagaccggagctgcagcacgtg 675
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60707760 attaaaaaggttgtggaagaattggaagacagaccggagctgcagcacgtg 60707810
Score = 91.7 bits (46), Expect = 1e-15
Identities = 46/46 (100%)
Strand = Plus / Plus
Query: 1246 gaggagaacatctgcgagtcgtgcctgtccccggtcctcccctcag 1291
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60726961 gaggagaacatctgcgagtcgtgcctgtccccggtcctcccctcag 60727006
Score = 87.7 bits (44), Expect = 2e-14
Identities = 44/44 (100%)
Strand = Plus / Plus
Query: 581 agaaagctgtcgacatgcttctggacaacgaagataaaatttca 624
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60707572 agaaagctgtcgacatgcttctggacaacgaagataaaatttca 60707615
>Sscrofa_Chr09
|| Length = 153670197
Score = 97.6 bits (49), Expect = 2e-17
Identities = 85/97 (87%)
Strand = Plus / Plus
Query: 1145 agattctgcttcgtgaaggctgcaagaagattctggtcgccgactctttgtccttactaa 1204
||||||||||| || ||||||| |||||||||||||| | ||||||||||||||| |||
Sbjct: 120056006 agattctgctttgtcaaggctgtaagaagattctggtagaagactctttgtccttattaa 120056065
Query: 1205 agaagatgcaccgaacccagatgaaaggcgtcctggt 1241
||||||||||| |||| || |||||||| || |||||
Sbjct: 120056066 agaagatgcactgaactcaaatgaaaggtgttctggt 120056102
Score = 91.7 bits (46), Expect = 1e-15
Identities = 113/134 (84%), Gaps = 1/134 (0%)
Strand = Plus / Minus
Query: 1012 tttatcaccggcttgctgaataacatcggcacccatgttgacccaattctcctgattcac 1071
||||| || |||||| |||| ||||| |||| | ||| ||||||| |||| | |||||||
Sbjct: 120084534 tttattactggcttggtgaacaacataggcagc-atgctgacccagttctacggattcac 120084476
Query: 1072 cgtattaaggaagggatggagattcctaacctgagagactccttggtcaaaatcctgcaa 1131
| ||||||||||| |||||||||||| | ||||||| | |||||||||||| | ||||
Sbjct: 120084475 cctattaaggaagaaatggagattcctgatttgagagattgcttggtcaaaattcggcaa 120084416
Query: 1132 gactacaatttgca 1145
||||||||||||||
Sbjct: 120084415 gactacaatttgca 120084402
Score = 61.9 bits (31), Expect = 1e-06
Identities = 64/75 (85%)
Strand = Plus / Minus
Query: 1378 cctgcacagttctgcaacatctgcagcgccaagcaccggggcccgggaagtgccattttg 1437
||||| |||||||| |||||||| || || |||||| |||| | |||||||||||||
Sbjct: 120049750 cctgcgcagttctgtaacatctgtagtgctaagcactggggagaagaaagtgccattttg 120049691
Query: 1438 gagatgaaaaaatag 1452
|||||||||||||||
Sbjct: 120049690 gagatgaaaaaatag 120049676
>Sscrofa_Chr17
|| Length = 69701581
Score = 87.7 bits (44), Expect = 2e-14
Identities = 108/127 (85%), Gaps = 3/127 (2%)
Strand = Plus / Minus
Query: 1464 tgtccgcctcgtcctcgctgc--tctgaagacggtttttgcagcaac-gaagcttttgtt 1520
|||| ||||| |||||||||| ||||||||| ||| ||| |||||| ||||||||||||
Sbjct: 18620294 tgtcagcctcttcctcgctgccctctgaagactgttcttgtagcaacagaagcttttgtt 18620235
Query: 1521 gacgccagtgcccttgaaagatttgtgcacgtgtgtgtcctgctggagaaaagctgcttc 1580
|| |||||| ||||||| ||||||||||| || ||| ||||| |||| |||||||||
Sbjct: 18620234 gatgccagtacccttgagagatttgtgcatgttgatgttctgctcaagaagagctgcttc 18620175
Query: 1581 ctcttct 1587
|||||||
Sbjct: 18620174 ctcttct 18620168
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 47,078,400
Number of extensions: 319
Number of successful extensions: 319
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 318
Number of HSP's successfully gapped: 20
Length of query: 1603
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1581
Effective length of database: 2,808,408,574
Effective search space: 4440093955494
Effective search space used: 4440093955494
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)