Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002968
(1051 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001030269.1| pre-rRNA-processing protein TSR2 homolog [Bo... 291 7e-79
Alignment gi|XP_002699677.1| PREDICTED: pre-rRNA-processing protein TSR2 ... 215 5e-56
Alignment gi|XP_001252639.2| PREDICTED: pre-rRNA-processing protein TSR2 ... 215 5e-56
>ref|NP_001030269.1| pre-rRNA-processing protein TSR2 homolog [Bos taurus].
Length = 190
Score = 291 bits (745), Expect = 7e-79
Identities = 153/191 (80%), Positives = 158/191 (82%), Gaps = 4/191 (2%)
Frame = +2
Query: 41 MAGAAEESLTLFRAGIRAALEAWPALQIAVENGFGGVHSQEKAEWLGGAVEEYFFRNADL 220
MA AAE+S LF A +RAALEAWPALQIAVENGFGGV+SQEKAEWLGGAVEEYFFRNADL
Sbjct: 1 MADAAEDSRALFGAAVRAALEAWPALQIAVENGFGGVYSQEKAEWLGGAVEEYFFRNADL 60
Query: 221 ELEEVEDFLGELMTNEFDTVVEDGSLPQVSQQLQTMFRHLQRGDRAALKEMASFITQRKC 400
EL+EVEDFLGELM NEFDTVVEDGSLPQVSQQLQTMF H Q+GDRAALKEMAS ITQRKC
Sbjct: 61 ELDEVEDFLGELMMNEFDTVVEDGSLPQVSQQLQTMFHHFQKGDRAALKEMASLITQRKC 120
Query: 401 KVXXXXXXXXXXXXXXXXXXNSVEEMEVAAMNDGAVTDGVCPQP----PDSQTIKEEDIV 568
KV NSVEEMEVAA NDGA TDGVCPQP PDSQTIKEEDIV
Sbjct: 121 KV-RATALPTAGETDEDDDANSVEEMEVAATNDGAATDGVCPQPEPSGPDSQTIKEEDIV 179
Query: 569 EDGWTIVRRKK 601
EDGWTIVRRKK
Sbjct: 180 EDGWTIVRRKK 190
>ref|XP_002699677.1| PREDICTED: pre-rRNA-processing protein TSR2 homolog [Bos taurus].
Length = 257
Score = 215 bits (548), Expect = 5e-56
Identities = 119/180 (66%), Positives = 129/180 (71%), Gaps = 4/180 (2%)
Frame = +2
Query: 71 LFRAGIRAALEAWPALQIAVENGFGGVHSQEKAEWLGGAVEEYFFRNADLELEEVEDFLG 250
L + +LEAWP LQIAVENGF VHS EKAEWLG AVEEYFF NADLEL+EV+DFL
Sbjct: 81 LLGTAVCTSLEAWPTLQIAVENGF--VHSWEKAEWLGSAVEEYFFHNADLELDEVKDFLR 138
Query: 251 ELMTNEFDTVVEDGSLPQVSQQLQTMFRHLQRGDRAALKEMASFITQRKCKVXXXXXXXX 430
ELM NEF+TVV GSLPQVSQQLQTMF H QR DRAALK MAS ITQRKCKV
Sbjct: 139 ELMKNEFNTVVGGGSLPQVSQQLQTMFHHFQRSDRAALKVMASLITQRKCKV-RVNGLTT 197
Query: 431 XXXXXXXXXXNSVEEMEVAAMNDGAVTDGVCPQP----PDSQTIKEEDIVEDGWTIVRRK 598
NS++EME+AAM GA TDG+CPQP PDSQTIKEED VEDG T R +
Sbjct: 198 ARETDEDDGANSMKEMEIAAMKYGAATDGICPQPEHFGPDSQTIKEEDKVEDGQTRERNE 257
>ref|XP_001252639.2| PREDICTED: pre-rRNA-processing protein TSR2 homolog [Bos taurus].
Length = 257
Score = 215 bits (548), Expect = 5e-56
Identities = 119/180 (66%), Positives = 129/180 (71%), Gaps = 4/180 (2%)
Frame = +2
Query: 71 LFRAGIRAALEAWPALQIAVENGFGGVHSQEKAEWLGGAVEEYFFRNADLELEEVEDFLG 250
L + +LEAWP LQIAVENGF VHS EKAEWLG AVEEYFF NADLEL+EV+DFL
Sbjct: 81 LLGTAVCTSLEAWPTLQIAVENGF--VHSWEKAEWLGSAVEEYFFHNADLELDEVKDFLR 138
Query: 251 ELMTNEFDTVVEDGSLPQVSQQLQTMFRHLQRGDRAALKEMASFITQRKCKVXXXXXXXX 430
ELM NEF+TVV GSLPQVSQQLQTMF H QR DRAALK MAS ITQRKCKV
Sbjct: 139 ELMKNEFNTVVGGGSLPQVSQQLQTMFHHFQRSDRAALKVMASLITQRKCKV-RVNGLTT 197
Query: 431 XXXXXXXXXXNSVEEMEVAAMNDGAVTDGVCPQP----PDSQTIKEEDIVEDGWTIVRRK 598
NS++EME+AAM GA TDG+CPQP PDSQTIKEED VEDG T R +
Sbjct: 198 ARETDEDDGANSMKEMEIAAMKYGAATDGICPQPEHFGPDSQTIKEEDKVEDGQTRERNE 257
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 42,081,489
Number of extensions: 1184149
Number of successful extensions: 4452
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4438
Number of HSP's successfully gapped: 3
Length of query: 350
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 247
Effective length of database: 14,273,310
Effective search space: 3525507570
Effective search space used: 3525507570
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002968
(1051 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_538053.1| PREDICTED: similar to CG14543-PA [Canis familia... 283 1e-76
>ref|XP_538053.1| PREDICTED: similar to CG14543-PA [Canis familiaris].
Length = 189
Score = 283 bits (725), Expect = 1e-76
Identities = 150/191 (78%), Positives = 155/191 (81%), Gaps = 4/191 (2%)
Frame = +2
Query: 41 MAGAAEESLTLFRAGIRAALEAWPALQIAVENGFGGVHSQEKAEWLGGAVEEYFFRNADL 220
MAGA E+S LF AG+RAALEAWPALQIAVENGFGGVHSQEKAEWLGGAVEEYFFRNADL
Sbjct: 1 MAGAGEDSRALFGAGVRAALEAWPALQIAVENGFGGVHSQEKAEWLGGAVEEYFFRNADL 60
Query: 221 ELEEVEDFLGELMTNEFDTVVEDGSLPQVSQQLQTMFRHLQRGDRAALKEMASFITQRKC 400
EL EVEDFLGELMTNEFDTVVEDGSLPQVSQQLQTMF H QRGD AALKEMAS ITQRK
Sbjct: 61 ELGEVEDFLGELMTNEFDTVVEDGSLPQVSQQLQTMFHHFQRGDGAALKEMASHITQRKY 120
Query: 401 KVXXXXXXXXXXXXXXXXXXNSVEEMEVAAMNDGAVTDGVCPQP----PDSQTIKEEDIV 568
+V +S+EEMEV NDGA TDGVCPQP PDSQTIKEEDIV
Sbjct: 121 RV--RATAVATARETDEDDVDSMEEMEVTDTNDGAATDGVCPQPASSGPDSQTIKEEDIV 178
Query: 569 EDGWTIVRRKK 601
EDGWTIVRRKK
Sbjct: 179 EDGWTIVRRKK 189
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 43,900,594
Number of extensions: 1220929
Number of successful extensions: 4496
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4471
Number of HSP's successfully gapped: 1
Length of query: 350
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 246
Effective length of database: 15,407,560
Effective search space: 3790259760
Effective search space used: 3790259760
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002968
(1051 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_477511.1| pre-rRNA-processing protein TSR2 homolog [Homo ... 289 3e-78
>ref|NP_477511.1| pre-rRNA-processing protein TSR2 homolog [Homo sapiens].
Length = 191
Score = 289 bits (740), Expect = 3e-78
Identities = 148/191 (77%), Positives = 158/191 (82%), Gaps = 4/191 (2%)
Frame = +2
Query: 41 MAGAAEESLTLFRAGIRAALEAWPALQIAVENGFGGVHSQEKAEWLGGAVEEYFFRNADL 220
MAGAAE++ LFRAG+ AALEAWPALQIAVENGFGGVHSQEKA+WLGGAVE+YF RNADL
Sbjct: 1 MAGAAEDARALFRAGVCAALEAWPALQIAVENGFGGVHSQEKAKWLGGAVEDYFMRNADL 60
Query: 221 ELEEVEDFLGELMTNEFDTVVEDGSLPQVSQQLQTMFRHLQRGDRAALKEMASFITQRKC 400
EL+EVEDFLGEL+TNEFDTVVEDGSLPQVSQQLQTMF H QRGD AAL+EMAS ITQRKC
Sbjct: 61 ELDEVEDFLGELLTNEFDTVVEDGSLPQVSQQLQTMFHHFQRGDGAALREMASCITQRKC 120
Query: 401 KVXXXXXXXXXXXXXXXXXXNSVEEMEVAAMNDGAVTDGVCPQP----PDSQTIKEEDIV 568
KV +SVEEMEV A NDGA TDGVCPQP PD+QTIKEEDIV
Sbjct: 121 KVTATALKTARETDEDEDDVDSVEEMEVTATNDGAATDGVCPQPEPSDPDAQTIKEEDIV 180
Query: 569 EDGWTIVRRKK 601
EDGWTIVRRKK
Sbjct: 181 EDGWTIVRRKK 191
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 43,082,882
Number of extensions: 1200991
Number of successful extensions: 4296
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4280
Number of HSP's successfully gapped: 1
Length of query: 350
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 247
Effective length of database: 14,901,872
Effective search space: 3680762384
Effective search space used: 3680762384
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002968
(1051 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_780355.2| pre-rRNA-processing protein TSR2 homolog isofor... 277 9e-75
Alignment gi|NP_001158050.1| pre-rRNA-processing protein TSR2 homolog iso... 272 4e-73
>ref|NP_780355.2| pre-rRNA-processing protein TSR2 homolog isoform 2 [Mus musculus].
Length = 192
Score = 277 bits (709), Expect = 9e-75
Identities = 143/192 (74%), Positives = 152/192 (79%), Gaps = 4/192 (2%)
Frame = +2
Query: 38 MMAGAAEESLTLFRAGIRAALEAWPALQIAVENGFGGVHSQEKAEWLGGAVEEYFFRNAD 217
MMAGAAE+ LF A +RAALEAWPALQIAVENGFGGVHSQEKAEWLGGAVE+YF NAD
Sbjct: 1 MMAGAAEDVRVLFGAAVRAALEAWPALQIAVENGFGGVHSQEKAEWLGGAVEDYFIANAD 60
Query: 218 LELEEVEDFLGELMTNEFDTVVEDGSLPQVSQQLQTMFRHLQRGDRAALKEMASFITQRK 397
LELEE+EDFLGELMT EFDTVVEDGSLPQVSQQLQTMF H Q+GD AAL+EM S I Q+K
Sbjct: 61 LELEEIEDFLGELMTTEFDTVVEDGSLPQVSQQLQTMFHHFQKGDGAALQEMTSQINQKK 120
Query: 398 CKVXXXXXXXXXXXXXXXXXXNSVEEMEVAAMNDGAVTDGVCPQP----PDSQTIKEEDI 565
CKV +SVEEMEV A NDGA TD VCPQP PD+QTIKEEDI
Sbjct: 121 CKVTATPLMTAKETDVAEDDVDSVEEMEVTATNDGATTDEVCPQPQPSDPDTQTIKEEDI 180
Query: 566 VEDGWTIVRRKK 601
VEDGWTIVRRKK
Sbjct: 181 VEDGWTIVRRKK 192
>ref|NP_001158050.1| pre-rRNA-processing protein TSR2 homolog isoform 1 [Mus musculus].
Length = 195
Score = 272 bits (695), Expect = 4e-73
Identities = 143/195 (73%), Positives = 152/195 (77%), Gaps = 7/195 (3%)
Frame = +2
Query: 38 MMAGAAEESLTLFRAGIRAALEAWPALQIAVENGFGGVHSQEKAEWLGGAVEEYFFRNAD 217
MMAGAAE+ LF A +RAALEAWPALQIAVENGFGGVHSQEKAEWLGGAVE+YF NAD
Sbjct: 1 MMAGAAEDVRVLFGAAVRAALEAWPALQIAVENGFGGVHSQEKAEWLGGAVEDYFIANAD 60
Query: 218 LELEEVEDFLGELMTNEFDTVVEDGSLPQVSQQLQTMFRHLQRGDRAALKEMASFITQRK 397
LELEE+EDFLGELMT EFDTVVEDGSLPQVSQQLQTMF H Q+GD AAL+EM S I Q+K
Sbjct: 61 LELEEIEDFLGELMTTEFDTVVEDGSLPQVSQQLQTMFHHFQKGDGAALQEMTSQINQKK 120
Query: 398 CKVXXXXXXXXXXXXXXXXXXNSVEEM---EVAAMNDGAVTDGVCPQP----PDSQTIKE 556
CKV +SVEEM EV A NDGA TD VCPQP PD+QTIKE
Sbjct: 121 CKVTATPLMTAKETDVAEDDVDSVEEMEVKEVTATNDGATTDEVCPQPQPSDPDTQTIKE 180
Query: 557 EDIVEDGWTIVRRKK 601
EDIVEDGWTIVRRKK
Sbjct: 181 EDIVEDGWTIVRRKK 195
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 36,318,547
Number of extensions: 995919
Number of successful extensions: 3624
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3609
Number of HSP's successfully gapped: 2
Length of query: 350
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 248
Effective length of database: 12,553,887
Effective search space: 3113363976
Effective search space used: 3113363976
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002968
(1051 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001927933.2| PREDICTED: pre-rRNA-processing protein TSR2 ... 333 9e-92
>ref|XP_001927933.2| PREDICTED: pre-rRNA-processing protein TSR2 homolog [Sus scrofa].
Length = 188
Score = 333 bits (854), Expect = 9e-92
Identities = 170/188 (90%), Positives = 170/188 (90%)
Frame = +2
Query: 38 MMAGAAEESLTLFRAGIRAALEAWPALQIAVENGFGGVHSQEKAEWLGGAVEEYFFRNAD 217
MMAGAAEESLTLFRAGIRAALEAWPALQIAVENGFGGVHSQEKAEWLGGAVEEYFFRNAD
Sbjct: 1 MMAGAAEESLTLFRAGIRAALEAWPALQIAVENGFGGVHSQEKAEWLGGAVEEYFFRNAD 60
Query: 218 LELEEVEDFLGELMTNEFDTVVEDGSLPQVSQQLQTMFRHLQRGDRAALKEMASFITQRK 397
LELEEVEDFLGELMTNEFDTVVEDGSLPQVSQQLQTMFRHLQRGDRAALKEMASFITQRK
Sbjct: 61 LELEEVEDFLGELMTNEFDTVVEDGSLPQVSQQLQTMFRHLQRGDRAALKEMASFITQRK 120
Query: 398 CKVXXXXXXXXXXXXXXXXXXNSVEEMEVAAMNDGAVTDGVCPQPPDSQTIKEEDIVEDG 577
CKV NSVEEMEVAAMNDGAVTDGVCPQPPDSQTIKEEDIVEDG
Sbjct: 121 CKVRATALTTARETDEDEDDANSVEEMEVAAMNDGAVTDGVCPQPPDSQTIKEEDIVEDG 180
Query: 578 WTIVRRKK 601
WTIVRRKK
Sbjct: 181 WTIVRRKK 188
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 27,186,392
Number of extensions: 765744
Number of successful extensions: 2989
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2974
Number of HSP's successfully gapped: 1
Length of query: 350
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 250
Effective length of database: 8,854,232
Effective search space: 2213558000
Effective search space used: 2213558000
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002968
(1051 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_ChrX 1055 0.0
>Sscrofa_ChrX
|| Length = 144288218
Score = 1055 bits (532), Expect = 0.0
Identities = 560/572 (97%)
Strand = Plus / Plus
Query: 480 aggttgcagctatgaatgatggggcagttacagatggggtctgcccccagccaccagact 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53048436 aggttgcagctatgaatgatggggcagttacagatggggtctgcccccagccaccagact 53048495
Query: 540 cccagactattaaggaagaggatatagtagaggatggctggactattgtccggagaaaga 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53048496 cccagactattaaggaagaggatatagtagaggatggctggactattgtccggagaaaga 53048555
Query: 600 aatgagtggggccagaaatggtttgggtccttatttgctagttgttttgggacttgtgtg 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53048556 aatgagtggggccagaaatggtttgggtccttatttgctagttgttttgggacttgtgtg 53048615
Query: 660 taggggggtgttttggagggttatggacctctggactggtttcctcatctccaccctctc 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53048616 taggggggtgttttggagggttatggacctctggactggtttcctcatctccaccctctc 53048675
Query: 720 cccattcccctgtacagcttcttccagggggagaagagccctagggtccttggtcttggg 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53048676 cccattcccctgtacagcttcttccagggggagaagagccctagggtccttggtcttggg 53048735
Query: 780 ctggtgggatctggttcaccagggcctggagttactgtctgagtgatgagggatgctttc 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53048736 ctggtgggatctggttcaccagggcctggagttactgtctgagtgatgagggatgctttc 53048795
Query: 840 ccagcaaagtgcctcttgggtgcagtcagggtgnnnnnnnngggatgaaaggtgtgggac 899
||||||||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct: 53048796 ccagcaaagtgcctcttgggtgcagtcagggtgaagaagaagggatgagaggtgtgggac 53048855
Query: 900 tgactggagaagctaaatgctggttcatggcaagcaagtggattgtaaagggagaggacc 959
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 53048856 tgactggagaagctaaatgctggttcatggcaggcaagtggattgtaaagggagaggacc 53048915
Query: 960 agggaaaacccatattcctgctgggtcaggatgtgaatgaaagtagctgtggtacctctc 1019
||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53048916 agggagaaccaatattcctgctgggtcaggatgtgaatgaaagtagctgtggtacctctc 53048975
Query: 1020 cctcttctcatcccccagtcctacagggcacc 1051
||||||||||||||||||||||||||||||||
Sbjct: 53048976 cctcttctcatcccccagtcctacagggcacc 53049007
Score = 359 bits (181), Expect = 2e-96
Identities = 181/181 (100%)
Strand = Plus / Plus
Query: 303 aggtgagccagcagctacagaccatgttccgccacctccagaggggtgatagggctgctc 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53047739 aggtgagccagcagctacagaccatgttccgccacctccagaggggtgatagggctgctc 53047798
Query: 363 tgaaggaaatggcctctttcatcacacaaagaaagtgcaaagttagagccactgcactaa 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53047799 tgaaggaaatggcctctttcatcacacaaagaaagtgcaaagttagagccactgcactaa 53047858
Query: 423 ctacagccagagagactgatgaagatgaggatgatgcaaacagcgtggaggagatggagg 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53047859 ctacagccagagagactgatgaagatgaggatgatgcaaacagcgtggaggagatggagg 53047918
Query: 483 t 483
|
Sbjct: 53047919 t 53047919
Score = 240 bits (121), Expect = 1e-60
Identities = 121/121 (100%)
Strand = Plus / Plus
Query: 1 gattggcctgcttgggcgtcacgtggtccgcagcaggatgatggcgggcgctgcagagga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53044002 gattggcctgcttgggcgtcacgtggtccgcagcaggatgatggcgggcgctgcagagga 53044061
Query: 61 gtctctaacgcttttccgggctggcatccgcgcagcgttggaggcttggcccgccttgca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53044062 gtctctaacgcttttccgggctggcatccgcgcagcgttggaggcttggcccgccttgca 53044121
Query: 121 g 121
|
Sbjct: 53044122 g 53044122
Score = 196 bits (99), Expect = 2e-47
Identities = 99/99 (100%)
Strand = Plus / Plus
Query: 212 gctgacttggagctagaggaggtggaggacttcctcggggagctcatgacgaatgagttt 271
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53047155 gctgacttggagctagaggaggtggaggacttcctcggggagctcatgacgaatgagttt 53047214
Query: 272 gatacggttgtggaagatgggagtctgccccaggtgagc 310
|||||||||||||||||||||||||||||||||||||||
Sbjct: 53047215 gatacggttgtggaagatgggagtctgccccaggtgagc 53047253
Score = 188 bits (95), Expect = 4e-45
Identities = 95/95 (100%)
Strand = Plus / Plus
Query: 118 gcagatcgctgtggagaacggctttggaggtgtgcatagccaggagaaggctgagtggct 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53044286 gcagatcgctgtggagaacggctttggaggtgtgcatagccaggagaaggctgagtggct 53044345
Query: 178 agggggtgcagtggaggagtatttcttccgcaatg 212
|||||||||||||||||||||||||||||||||||
Sbjct: 53044346 agggggtgcagtggaggagtatttcttccgcaatg 53044380
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 31,887,953
Number of extensions: 217
Number of successful extensions: 217
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 217
Number of HSP's successfully gapped: 6
Length of query: 1051
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1030
Effective length of database: 2,808,413,156
Effective search space: 2892665550680
Effective search space used: 2892665550680
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)