Animal-Genome cDNA 20110601C-002968


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002968
         (1051 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001030269.1| pre-rRNA-processing protein TSR2 homolog [Bo...   291   7e-79
Alignment   gi|XP_002699677.1| PREDICTED: pre-rRNA-processing protein TSR2 ...   215   5e-56
Alignment   gi|XP_001252639.2| PREDICTED: pre-rRNA-processing protein TSR2 ...   215   5e-56

>ref|NP_001030269.1| pre-rRNA-processing protein TSR2 homolog [Bos taurus].
          Length = 190

 Score =  291 bits (745), Expect = 7e-79
 Identities = 153/191 (80%), Positives = 158/191 (82%), Gaps = 4/191 (2%)
 Frame = +2

Query: 41  MAGAAEESLTLFRAGIRAALEAWPALQIAVENGFGGVHSQEKAEWLGGAVEEYFFRNADL 220
           MA AAE+S  LF A +RAALEAWPALQIAVENGFGGV+SQEKAEWLGGAVEEYFFRNADL
Sbjct: 1   MADAAEDSRALFGAAVRAALEAWPALQIAVENGFGGVYSQEKAEWLGGAVEEYFFRNADL 60

Query: 221 ELEEVEDFLGELMTNEFDTVVEDGSLPQVSQQLQTMFRHLQRGDRAALKEMASFITQRKC 400
           EL+EVEDFLGELM NEFDTVVEDGSLPQVSQQLQTMF H Q+GDRAALKEMAS ITQRKC
Sbjct: 61  ELDEVEDFLGELMMNEFDTVVEDGSLPQVSQQLQTMFHHFQKGDRAALKEMASLITQRKC 120

Query: 401 KVXXXXXXXXXXXXXXXXXXNSVEEMEVAAMNDGAVTDGVCPQP----PDSQTIKEEDIV 568
           KV                  NSVEEMEVAA NDGA TDGVCPQP    PDSQTIKEEDIV
Sbjct: 121 KV-RATALPTAGETDEDDDANSVEEMEVAATNDGAATDGVCPQPEPSGPDSQTIKEEDIV 179

Query: 569 EDGWTIVRRKK 601
           EDGWTIVRRKK
Sbjct: 180 EDGWTIVRRKK 190


>ref|XP_002699677.1| PREDICTED: pre-rRNA-processing protein TSR2 homolog [Bos taurus].
          Length = 257

 Score =  215 bits (548), Expect = 5e-56
 Identities = 119/180 (66%), Positives = 129/180 (71%), Gaps = 4/180 (2%)
 Frame = +2

Query: 71  LFRAGIRAALEAWPALQIAVENGFGGVHSQEKAEWLGGAVEEYFFRNADLELEEVEDFLG 250
           L    +  +LEAWP LQIAVENGF  VHS EKAEWLG AVEEYFF NADLEL+EV+DFL 
Sbjct: 81  LLGTAVCTSLEAWPTLQIAVENGF--VHSWEKAEWLGSAVEEYFFHNADLELDEVKDFLR 138

Query: 251 ELMTNEFDTVVEDGSLPQVSQQLQTMFRHLQRGDRAALKEMASFITQRKCKVXXXXXXXX 430
           ELM NEF+TVV  GSLPQVSQQLQTMF H QR DRAALK MAS ITQRKCKV        
Sbjct: 139 ELMKNEFNTVVGGGSLPQVSQQLQTMFHHFQRSDRAALKVMASLITQRKCKV-RVNGLTT 197

Query: 431 XXXXXXXXXXNSVEEMEVAAMNDGAVTDGVCPQP----PDSQTIKEEDIVEDGWTIVRRK 598
                     NS++EME+AAM  GA TDG+CPQP    PDSQTIKEED VEDG T  R +
Sbjct: 198 ARETDEDDGANSMKEMEIAAMKYGAATDGICPQPEHFGPDSQTIKEEDKVEDGQTRERNE 257


>ref|XP_001252639.2| PREDICTED: pre-rRNA-processing protein TSR2 homolog [Bos taurus].
          Length = 257

 Score =  215 bits (548), Expect = 5e-56
 Identities = 119/180 (66%), Positives = 129/180 (71%), Gaps = 4/180 (2%)
 Frame = +2

Query: 71  LFRAGIRAALEAWPALQIAVENGFGGVHSQEKAEWLGGAVEEYFFRNADLELEEVEDFLG 250
           L    +  +LEAWP LQIAVENGF  VHS EKAEWLG AVEEYFF NADLEL+EV+DFL 
Sbjct: 81  LLGTAVCTSLEAWPTLQIAVENGF--VHSWEKAEWLGSAVEEYFFHNADLELDEVKDFLR 138

Query: 251 ELMTNEFDTVVEDGSLPQVSQQLQTMFRHLQRGDRAALKEMASFITQRKCKVXXXXXXXX 430
           ELM NEF+TVV  GSLPQVSQQLQTMF H QR DRAALK MAS ITQRKCKV        
Sbjct: 139 ELMKNEFNTVVGGGSLPQVSQQLQTMFHHFQRSDRAALKVMASLITQRKCKV-RVNGLTT 197

Query: 431 XXXXXXXXXXNSVEEMEVAAMNDGAVTDGVCPQP----PDSQTIKEEDIVEDGWTIVRRK 598
                     NS++EME+AAM  GA TDG+CPQP    PDSQTIKEED VEDG T  R +
Sbjct: 198 ARETDEDDGANSMKEMEIAAMKYGAATDGICPQPEHFGPDSQTIKEEDKVEDGQTRERNE 257


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 42,081,489
Number of extensions: 1184149
Number of successful extensions: 4452
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4438
Number of HSP's successfully gapped: 3
Length of query: 350
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 247
Effective length of database: 14,273,310
Effective search space: 3525507570
Effective search space used: 3525507570
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002968
         (1051 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_538053.1| PREDICTED: similar to CG14543-PA [Canis familia...   283   1e-76

>ref|XP_538053.1| PREDICTED: similar to CG14543-PA [Canis familiaris].
          Length = 189

 Score =  283 bits (725), Expect = 1e-76
 Identities = 150/191 (78%), Positives = 155/191 (81%), Gaps = 4/191 (2%)
 Frame = +2

Query: 41  MAGAAEESLTLFRAGIRAALEAWPALQIAVENGFGGVHSQEKAEWLGGAVEEYFFRNADL 220
           MAGA E+S  LF AG+RAALEAWPALQIAVENGFGGVHSQEKAEWLGGAVEEYFFRNADL
Sbjct: 1   MAGAGEDSRALFGAGVRAALEAWPALQIAVENGFGGVHSQEKAEWLGGAVEEYFFRNADL 60

Query: 221 ELEEVEDFLGELMTNEFDTVVEDGSLPQVSQQLQTMFRHLQRGDRAALKEMASFITQRKC 400
           EL EVEDFLGELMTNEFDTVVEDGSLPQVSQQLQTMF H QRGD AALKEMAS ITQRK 
Sbjct: 61  ELGEVEDFLGELMTNEFDTVVEDGSLPQVSQQLQTMFHHFQRGDGAALKEMASHITQRKY 120

Query: 401 KVXXXXXXXXXXXXXXXXXXNSVEEMEVAAMNDGAVTDGVCPQP----PDSQTIKEEDIV 568
           +V                  +S+EEMEV   NDGA TDGVCPQP    PDSQTIKEEDIV
Sbjct: 121 RV--RATAVATARETDEDDVDSMEEMEVTDTNDGAATDGVCPQPASSGPDSQTIKEEDIV 178

Query: 569 EDGWTIVRRKK 601
           EDGWTIVRRKK
Sbjct: 179 EDGWTIVRRKK 189


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 43,900,594
Number of extensions: 1220929
Number of successful extensions: 4496
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4471
Number of HSP's successfully gapped: 1
Length of query: 350
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 246
Effective length of database: 15,407,560
Effective search space: 3790259760
Effective search space used: 3790259760
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002968
         (1051 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_477511.1| pre-rRNA-processing protein TSR2 homolog [Homo ...   289   3e-78

>ref|NP_477511.1| pre-rRNA-processing protein TSR2 homolog [Homo sapiens].
          Length = 191

 Score =  289 bits (740), Expect = 3e-78
 Identities = 148/191 (77%), Positives = 158/191 (82%), Gaps = 4/191 (2%)
 Frame = +2

Query: 41  MAGAAEESLTLFRAGIRAALEAWPALQIAVENGFGGVHSQEKAEWLGGAVEEYFFRNADL 220
           MAGAAE++  LFRAG+ AALEAWPALQIAVENGFGGVHSQEKA+WLGGAVE+YF RNADL
Sbjct: 1   MAGAAEDARALFRAGVCAALEAWPALQIAVENGFGGVHSQEKAKWLGGAVEDYFMRNADL 60

Query: 221 ELEEVEDFLGELMTNEFDTVVEDGSLPQVSQQLQTMFRHLQRGDRAALKEMASFITQRKC 400
           EL+EVEDFLGEL+TNEFDTVVEDGSLPQVSQQLQTMF H QRGD AAL+EMAS ITQRKC
Sbjct: 61  ELDEVEDFLGELLTNEFDTVVEDGSLPQVSQQLQTMFHHFQRGDGAALREMASCITQRKC 120

Query: 401 KVXXXXXXXXXXXXXXXXXXNSVEEMEVAAMNDGAVTDGVCPQP----PDSQTIKEEDIV 568
           KV                  +SVEEMEV A NDGA TDGVCPQP    PD+QTIKEEDIV
Sbjct: 121 KVTATALKTARETDEDEDDVDSVEEMEVTATNDGAATDGVCPQPEPSDPDAQTIKEEDIV 180

Query: 569 EDGWTIVRRKK 601
           EDGWTIVRRKK
Sbjct: 181 EDGWTIVRRKK 191


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 43,082,882
Number of extensions: 1200991
Number of successful extensions: 4296
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4280
Number of HSP's successfully gapped: 1
Length of query: 350
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 247
Effective length of database: 14,901,872
Effective search space: 3680762384
Effective search space used: 3680762384
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002968
         (1051 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_780355.2| pre-rRNA-processing protein TSR2 homolog isofor...   277   9e-75
Alignment   gi|NP_001158050.1| pre-rRNA-processing protein TSR2 homolog iso...   272   4e-73

>ref|NP_780355.2| pre-rRNA-processing protein TSR2 homolog isoform 2 [Mus musculus].
          Length = 192

 Score =  277 bits (709), Expect = 9e-75
 Identities = 143/192 (74%), Positives = 152/192 (79%), Gaps = 4/192 (2%)
 Frame = +2

Query: 38  MMAGAAEESLTLFRAGIRAALEAWPALQIAVENGFGGVHSQEKAEWLGGAVEEYFFRNAD 217
           MMAGAAE+   LF A +RAALEAWPALQIAVENGFGGVHSQEKAEWLGGAVE+YF  NAD
Sbjct: 1   MMAGAAEDVRVLFGAAVRAALEAWPALQIAVENGFGGVHSQEKAEWLGGAVEDYFIANAD 60

Query: 218 LELEEVEDFLGELMTNEFDTVVEDGSLPQVSQQLQTMFRHLQRGDRAALKEMASFITQRK 397
           LELEE+EDFLGELMT EFDTVVEDGSLPQVSQQLQTMF H Q+GD AAL+EM S I Q+K
Sbjct: 61  LELEEIEDFLGELMTTEFDTVVEDGSLPQVSQQLQTMFHHFQKGDGAALQEMTSQINQKK 120

Query: 398 CKVXXXXXXXXXXXXXXXXXXNSVEEMEVAAMNDGAVTDGVCPQP----PDSQTIKEEDI 565
           CKV                  +SVEEMEV A NDGA TD VCPQP    PD+QTIKEEDI
Sbjct: 121 CKVTATPLMTAKETDVAEDDVDSVEEMEVTATNDGATTDEVCPQPQPSDPDTQTIKEEDI 180

Query: 566 VEDGWTIVRRKK 601
           VEDGWTIVRRKK
Sbjct: 181 VEDGWTIVRRKK 192


>ref|NP_001158050.1| pre-rRNA-processing protein TSR2 homolog isoform 1 [Mus musculus].
          Length = 195

 Score =  272 bits (695), Expect = 4e-73
 Identities = 143/195 (73%), Positives = 152/195 (77%), Gaps = 7/195 (3%)
 Frame = +2

Query: 38  MMAGAAEESLTLFRAGIRAALEAWPALQIAVENGFGGVHSQEKAEWLGGAVEEYFFRNAD 217
           MMAGAAE+   LF A +RAALEAWPALQIAVENGFGGVHSQEKAEWLGGAVE+YF  NAD
Sbjct: 1   MMAGAAEDVRVLFGAAVRAALEAWPALQIAVENGFGGVHSQEKAEWLGGAVEDYFIANAD 60

Query: 218 LELEEVEDFLGELMTNEFDTVVEDGSLPQVSQQLQTMFRHLQRGDRAALKEMASFITQRK 397
           LELEE+EDFLGELMT EFDTVVEDGSLPQVSQQLQTMF H Q+GD AAL+EM S I Q+K
Sbjct: 61  LELEEIEDFLGELMTTEFDTVVEDGSLPQVSQQLQTMFHHFQKGDGAALQEMTSQINQKK 120

Query: 398 CKVXXXXXXXXXXXXXXXXXXNSVEEM---EVAAMNDGAVTDGVCPQP----PDSQTIKE 556
           CKV                  +SVEEM   EV A NDGA TD VCPQP    PD+QTIKE
Sbjct: 121 CKVTATPLMTAKETDVAEDDVDSVEEMEVKEVTATNDGATTDEVCPQPQPSDPDTQTIKE 180

Query: 557 EDIVEDGWTIVRRKK 601
           EDIVEDGWTIVRRKK
Sbjct: 181 EDIVEDGWTIVRRKK 195


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 36,318,547
Number of extensions: 995919
Number of successful extensions: 3624
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3609
Number of HSP's successfully gapped: 2
Length of query: 350
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 248
Effective length of database: 12,553,887
Effective search space: 3113363976
Effective search space used: 3113363976
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002968
         (1051 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_001927933.2| PREDICTED: pre-rRNA-processing protein TSR2 ...   333   9e-92

>ref|XP_001927933.2| PREDICTED: pre-rRNA-processing protein TSR2 homolog [Sus scrofa].
          Length = 188

 Score =  333 bits (854), Expect = 9e-92
 Identities = 170/188 (90%), Positives = 170/188 (90%)
 Frame = +2

Query: 38  MMAGAAEESLTLFRAGIRAALEAWPALQIAVENGFGGVHSQEKAEWLGGAVEEYFFRNAD 217
           MMAGAAEESLTLFRAGIRAALEAWPALQIAVENGFGGVHSQEKAEWLGGAVEEYFFRNAD
Sbjct: 1   MMAGAAEESLTLFRAGIRAALEAWPALQIAVENGFGGVHSQEKAEWLGGAVEEYFFRNAD 60

Query: 218 LELEEVEDFLGELMTNEFDTVVEDGSLPQVSQQLQTMFRHLQRGDRAALKEMASFITQRK 397
           LELEEVEDFLGELMTNEFDTVVEDGSLPQVSQQLQTMFRHLQRGDRAALKEMASFITQRK
Sbjct: 61  LELEEVEDFLGELMTNEFDTVVEDGSLPQVSQQLQTMFRHLQRGDRAALKEMASFITQRK 120

Query: 398 CKVXXXXXXXXXXXXXXXXXXNSVEEMEVAAMNDGAVTDGVCPQPPDSQTIKEEDIVEDG 577
           CKV                  NSVEEMEVAAMNDGAVTDGVCPQPPDSQTIKEEDIVEDG
Sbjct: 121 CKVRATALTTARETDEDEDDANSVEEMEVAAMNDGAVTDGVCPQPPDSQTIKEEDIVEDG 180

Query: 578 WTIVRRKK 601
           WTIVRRKK
Sbjct: 181 WTIVRRKK 188


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 27,186,392
Number of extensions: 765744
Number of successful extensions: 2989
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2974
Number of HSP's successfully gapped: 1
Length of query: 350
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 250
Effective length of database: 8,854,232
Effective search space: 2213558000
Effective search space used: 2213558000
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002968
         (1051 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_ChrX                                                         1055   0.0  

>Sscrofa_ChrX 
||          Length = 144288218

 Score = 1055 bits (532), Expect = 0.0
 Identities = 560/572 (97%)
 Strand = Plus / Plus

                                                                            
Query: 480      aggttgcagctatgaatgatggggcagttacagatggggtctgcccccagccaccagact 539
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53048436 aggttgcagctatgaatgatggggcagttacagatggggtctgcccccagccaccagact 53048495

                                                                            
Query: 540      cccagactattaaggaagaggatatagtagaggatggctggactattgtccggagaaaga 599
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53048496 cccagactattaaggaagaggatatagtagaggatggctggactattgtccggagaaaga 53048555

                                                                            
Query: 600      aatgagtggggccagaaatggtttgggtccttatttgctagttgttttgggacttgtgtg 659
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53048556 aatgagtggggccagaaatggtttgggtccttatttgctagttgttttgggacttgtgtg 53048615

                                                                            
Query: 660      taggggggtgttttggagggttatggacctctggactggtttcctcatctccaccctctc 719
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53048616 taggggggtgttttggagggttatggacctctggactggtttcctcatctccaccctctc 53048675

                                                                            
Query: 720      cccattcccctgtacagcttcttccagggggagaagagccctagggtccttggtcttggg 779
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53048676 cccattcccctgtacagcttcttccagggggagaagagccctagggtccttggtcttggg 53048735

                                                                            
Query: 780      ctggtgggatctggttcaccagggcctggagttactgtctgagtgatgagggatgctttc 839
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53048736 ctggtgggatctggttcaccagggcctggagttactgtctgagtgatgagggatgctttc 53048795

                                                                            
Query: 840      ccagcaaagtgcctcttgggtgcagtcagggtgnnnnnnnngggatgaaaggtgtgggac 899
                |||||||||||||||||||||||||||||||||        ||||||| |||||||||||
Sbjct: 53048796 ccagcaaagtgcctcttgggtgcagtcagggtgaagaagaagggatgagaggtgtgggac 53048855

                                                                            
Query: 900      tgactggagaagctaaatgctggttcatggcaagcaagtggattgtaaagggagaggacc 959
                |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 53048856 tgactggagaagctaaatgctggttcatggcaggcaagtggattgtaaagggagaggacc 53048915

                                                                            
Query: 960      agggaaaacccatattcctgctgggtcaggatgtgaatgaaagtagctgtggtacctctc 1019
                ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53048916 agggagaaccaatattcctgctgggtcaggatgtgaatgaaagtagctgtggtacctctc 53048975

                                                
Query: 1020     cctcttctcatcccccagtcctacagggcacc 1051
                ||||||||||||||||||||||||||||||||
Sbjct: 53048976 cctcttctcatcccccagtcctacagggcacc 53049007



 Score =  359 bits (181), Expect = 2e-96
 Identities = 181/181 (100%)
 Strand = Plus / Plus

                                                                            
Query: 303      aggtgagccagcagctacagaccatgttccgccacctccagaggggtgatagggctgctc 362
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53047739 aggtgagccagcagctacagaccatgttccgccacctccagaggggtgatagggctgctc 53047798

                                                                            
Query: 363      tgaaggaaatggcctctttcatcacacaaagaaagtgcaaagttagagccactgcactaa 422
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53047799 tgaaggaaatggcctctttcatcacacaaagaaagtgcaaagttagagccactgcactaa 53047858

                                                                            
Query: 423      ctacagccagagagactgatgaagatgaggatgatgcaaacagcgtggaggagatggagg 482
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53047859 ctacagccagagagactgatgaagatgaggatgatgcaaacagcgtggaggagatggagg 53047918

                 
Query: 483      t 483
                |
Sbjct: 53047919 t 53047919



 Score =  240 bits (121), Expect = 1e-60
 Identities = 121/121 (100%)
 Strand = Plus / Plus

                                                                            
Query: 1        gattggcctgcttgggcgtcacgtggtccgcagcaggatgatggcgggcgctgcagagga 60
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53044002 gattggcctgcttgggcgtcacgtggtccgcagcaggatgatggcgggcgctgcagagga 53044061

                                                                            
Query: 61       gtctctaacgcttttccgggctggcatccgcgcagcgttggaggcttggcccgccttgca 120
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53044062 gtctctaacgcttttccgggctggcatccgcgcagcgttggaggcttggcccgccttgca 53044121

                 
Query: 121      g 121
                |
Sbjct: 53044122 g 53044122



 Score =  196 bits (99), Expect = 2e-47
 Identities = 99/99 (100%)
 Strand = Plus / Plus

                                                                            
Query: 212      gctgacttggagctagaggaggtggaggacttcctcggggagctcatgacgaatgagttt 271
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53047155 gctgacttggagctagaggaggtggaggacttcctcggggagctcatgacgaatgagttt 53047214

                                                       
Query: 272      gatacggttgtggaagatgggagtctgccccaggtgagc 310
                |||||||||||||||||||||||||||||||||||||||
Sbjct: 53047215 gatacggttgtggaagatgggagtctgccccaggtgagc 53047253



 Score =  188 bits (95), Expect = 4e-45
 Identities = 95/95 (100%)
 Strand = Plus / Plus

                                                                            
Query: 118      gcagatcgctgtggagaacggctttggaggtgtgcatagccaggagaaggctgagtggct 177
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53044286 gcagatcgctgtggagaacggctttggaggtgtgcatagccaggagaaggctgagtggct 53044345

                                                   
Query: 178      agggggtgcagtggaggagtatttcttccgcaatg 212
                |||||||||||||||||||||||||||||||||||
Sbjct: 53044346 agggggtgcagtggaggagtatttcttccgcaatg 53044380


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 31,887,953
Number of extensions: 217
Number of successful extensions: 217
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 217
Number of HSP's successfully gapped: 6
Length of query: 1051
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1030
Effective length of database: 2,808,413,156
Effective search space: 2892665550680
Effective search space used: 2892665550680
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)