Animal-Genome cDNA 20110601C-002998


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002998
         (994 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001068821.1| inter-alpha-trypsin inhibitor heavy chain H1...   511   e-145
Alignment   gi|NP_001095368.1| inter-alpha-trypsin inhibitor heavy chain H3...   345   3e-95
Alignment   gi|NP_001015590.2| inter-alpha-trypsin inhibitor heavy chain H4...   273   1e-73
Alignment   gi|NP_001091485.1| inter-alpha-trypsin inhibitor heavy chain H2...   234   9e-62
Alignment   gi|NP_001095986.1| inter-alpha-trypsin inhibitor heavy chain H5...   156   2e-38

>ref|NP_001068821.1| inter-alpha-trypsin inhibitor heavy chain H1 precursor [Bos
           taurus].
          Length = 906

 Score =  511 bits (1316), Expect = e-145
 Identities = 257/307 (83%), Positives = 279/307 (90%), Gaps = 7/307 (2%)
 Frame = +3

Query: 93  AMPTQGSPTDSTKGNK-------AVNGVVIRSLKVNCKVTSRFAHYVVTSQVVNNANKAK 251
           A+  QGSPT + KG K       AV+GVVIRSLKVNCKVTSRFAHY++TSQVVN+A+ AK
Sbjct: 19  AVAAQGSPTRNPKGGKKRMAVDAAVDGVVIRSLKVNCKVTSRFAHYIITSQVVNSADTAK 78

Query: 252 EVAFDVEIPKTAFISDFAITADENTFVGDIKDKVTAWKQYRKAAISGENSGLVRASGRTM 431
           EV+F+VEIPKTAFISDFAITADEN F GDIKDKVTAWKQYRKAAISGEN+GLVRASGRTM
Sbjct: 79  EVSFNVEIPKTAFISDFAITADENAFTGDIKDKVTAWKQYRKAAISGENAGLVRASGRTM 138

Query: 432 EQFAIHVTIGPRSKATFQLTYEEVLRRKLTQYDIVIKVKPKQLVQHFEIDVDIFEPQGIS 611
           EQF+IH+ +GPRSKATF+LTYEEVLRRKL QYDIVIKVKP+QLVQHFEIDVDIFEPQGI 
Sbjct: 139 EQFSIHIIVGPRSKATFRLTYEEVLRRKLMQYDIVIKVKPQQLVQHFEIDVDIFEPQGIR 198

Query: 612 KLDAQASFLSKEAAAQLIKKSFSGKKGHVLFRPTVGQQQSCPTCSTTLLNGDFKVTYDVN 791
           KLD +ASFL KE AAQLIKKSFSGKKGHVLFRPTV QQQ+CPTCSTTLLNGDFKVTYDVN
Sbjct: 199 KLDVEASFLPKELAAQLIKKSFSGKKGHVLFRPTVSQQQTCPTCSTTLLNGDFKVTYDVN 258

Query: 792 REKLCDLLVANNYFAHFFAPQNLTKLNKNVVFVIDISSSMEGQKVKQTKKALLKILSDLK 971
           R+  CDLLVANNYFAHFFAPQNL KLNKNVVFVIDISSSMEGQK+KQTK+AL KIL D++
Sbjct: 259 RDDACDLLVANNYFAHFFAPQNLKKLNKNVVFVIDISSSMEGQKLKQTKEALHKILGDMR 318

Query: 972 PGDYFHL 992
           PGDYF L
Sbjct: 319 PGDYFDL 325


>ref|NP_001095368.1| inter-alpha-trypsin inhibitor heavy chain H3 precursor [Bos
           taurus].
          Length = 891

 Score =  345 bits (886), Expect = 3e-95
 Identities = 166/284 (58%), Positives = 220/284 (77%)
 Frame = +3

Query: 138 KAVNGVVIRSLKVNCKVTSRFAHYVVTSQVVNNANKAKEVAFDVEIPKTAFISDFAITAD 317
           +AV+G+ + S KVNCKVTSRFAH VVT++ VN+AN AKEV+FDVE+PKTAFI++F +T D
Sbjct: 38  RAVDGIEVYSTKVNCKVTSRFAHNVVTTRAVNHANTAKEVSFDVELPKTAFITNFTLTID 97

Query: 318 ENTFVGDIKDKVTAWKQYRKAAISGENSGLVRASGRTMEQFAIHVTIGPRSKATFQLTYE 497
             T+ G +K+K  A KQY KA   G+ +GLV+ASGR +E+F + V +   SK TF+LTYE
Sbjct: 98  GVTYPGKVKEKEVAKKQYEKAVSQGKTAGLVKASGRKLEKFTVSVNVAAGSKVTFELTYE 157

Query: 498 EVLRRKLTQYDIVIKVKPKQLVQHFEIDVDIFEPQGISKLDAQASFLSKEAAAQLIKKSF 677
           E+L+R   +Y++ +KV+PKQLV+HFEI VDIFEPQGIS LDA+ASF++ +     + KSF
Sbjct: 158 ELLKRHKGKYEMYLKVQPKQLVKHFEITVDIFEPQGISTLDAEASFITNDLLGSALTKSF 217

Query: 678 SGKKGHVLFRPTVGQQQSCPTCSTTLLNGDFKVTYDVNREKLCDLLVANNYFAHFFAPQN 857
           SGKKGHV F+P++ QQ+SCPTC+ +LL GDF +TYDVNRE   ++ + N YF HFFAPQ 
Sbjct: 218 SGKKGHVSFKPSLDQQRSCPTCTDSLLKGDFIITYDVNRESPANVQIVNGYFVHFFAPQG 277

Query: 858 LTKLNKNVVFVIDISSSMEGQKVKQTKKALLKILSDLKPGDYFH 989
           L  + K+VVFVID+S SM G+K++QTK ALLKIL D+K  DY +
Sbjct: 278 LPVVPKSVVFVIDVSGSMHGRKMEQTKDALLKILEDVKQDDYLN 321


>ref|NP_001015590.2| inter-alpha-trypsin inhibitor heavy chain H4 precursor [Bos
           taurus].
          Length = 916

 Score =  273 bits (699), Expect = 1e-73
 Identities = 137/291 (47%), Positives = 203/291 (69%), Gaps = 1/291 (0%)
 Frame = +3

Query: 123 STKGNKAVNGVVIRSLKVNCKVTSRFAHYVVTSQVVNNANKAKEVAFDVEIPKTAFISDF 302
           ++K  K  N + I SL V+ KV+SRFAH V+TS+VVN A+  +E  F +E+PK AFI++F
Sbjct: 24  TSKAQKVQNDIDIYSLTVDSKVSSRFAHTVITSRVVNKADAVREATFQMELPKKAFITNF 83

Query: 303 AITADENTFVGDIKDKVTAWKQYRKAAISGENSGLVRASGRTMEQFAIHVTIGPRSKATF 482
           ++  D  T+ G+IK+K  A +QY  A   GE++GLVRA+GR  EQF + V++ P +K TF
Sbjct: 84  SMVIDGVTYPGNIKEKAAAQEQYSAAVARGESAGLVRATGRKTEQFQVSVSVAPAAKVTF 143

Query: 483 QLTYEEVLRRKLTQYDIVIKVKPKQLVQHFEIDVDIFEPQGISKLDAQASFLSKEAAAQL 662
           +L YEE+L R L  Y++++KV+P+QLV+H ++D+ IFEPQGIS L+ +++F++ +  A+ 
Sbjct: 144 ELVYEELLARHLGAYELLLKVRPQQLVKHLQMDIHIFEPQGISFLETESTFMTNK-LAEA 202

Query: 663 IKKSFSGKKGHVLFRPTVGQQQSCPTCSTTLLNGDFKVTYDVNRE-KLCDLLVANNYFAH 839
           +  S +  K HV F+PT+ QQQ  P    T+++G F V YDV+R      + + N YF H
Sbjct: 203 LTTSQNKTKAHVRFKPTLSQQQKYPEKQDTVIDGSFIVRYDVDRPLSGGSIQIENGYFVH 262

Query: 840 FFAPQNLTKLNKNVVFVIDISSSMEGQKVKQTKKALLKILSDLKPGDYFHL 992
           +FAP +L+ + KNV+FVID S SM G+K+KQT++AL+KIL DL P D F L
Sbjct: 263 YFAPDSLSTIPKNVIFVIDKSGSMMGRKIKQTREALIKILDDLSPHDQFDL 313


>ref|NP_001091485.1| inter-alpha-trypsin inhibitor heavy chain H2 [Bos taurus].
          Length = 946

 Score =  234 bits (597), Expect = 9e-62
 Identities = 124/290 (42%), Positives = 182/290 (62%), Gaps = 1/290 (0%)
 Frame = +3

Query: 120 DSTKGNKAVNGVVIRSLKVNCKVTSRFAHYVVTSQVVNNANKAKEVAFDVEIPKTAFISD 299
           +S +  + V+ V + S KV   +TSR A+ V+ ++VVN++ + + V FDV+IPK AFIS+
Sbjct: 59  ESGERTEDVDQVTVYSYKVQSTITSRVANTVIQTKVVNHSPQPQNVVFDVQIPKGAFISN 118

Query: 300 FAITADENTFVGDIKDKVTAWKQYRKAAISGENSGLVRASGRTMEQFAIHVTIGPRSKAT 479
           F++T D  TF   IK+K      Y +A   G+ +GLVR+    ME F   V+I P +K  
Sbjct: 119 FSMTVDGTTFTSSIKEKTVGRALYAQARAKGKTAGLVRSRALDMEDFKTEVSIAPGAKVQ 178

Query: 480 FQLTYEEVLRRKLTQYDIVIKVKPKQLVQHFEIDVDIFEPQGISKLDAQASFLSKEAAAQ 659
           F+L Y+EV  RKL  Y+  + +KP +L +H E+DV I EPQG+  L    +F        
Sbjct: 179 FELHYQEVKWRKLGSYEHRLHLKPGRLAKHLEVDVRIIEPQGLRSLHVLDTFDGHFDGVP 238

Query: 660 LIKKSFSGKKGHVLFRPTVGQQQSCPTCSTTLLNGDFKVTYDVNR-EKLCDLLVANNYFA 836
           ++ K    +K H+ F+PTV QQ+ C  CS T+++G+  V YDVNR EK+ +L V N YF 
Sbjct: 239 VVSK--GPQKAHIAFKPTVAQQRKCLNCSETMVDGELVVMYDVNREEKVGELEVFNGYFV 296

Query: 837 HFFAPQNLTKLNKNVVFVIDISSSMEGQKVKQTKKALLKILSDLKPGDYF 986
           HFFAP+N+  + KN++FVID+S SM G K+KQT +A+  IL DL+  D+F
Sbjct: 297 HFFAPENMDPIPKNILFVIDVSGSMWGIKMKQTVEAMKTILDDLRTEDHF 346


>ref|NP_001095986.1| inter-alpha-trypsin inhibitor heavy chain H5 precursor [Bos
           taurus].
          Length = 940

 Score =  156 bits (395), Expect = 2e-38
 Identities = 99/294 (33%), Positives = 166/294 (56%), Gaps = 15/294 (5%)
 Frame = +3

Query: 156 VIRSLKVNCKVTSRFAHYVVTSQVVNNANKAKEVAFDVEIPKTAFISDFAITADENTFVG 335
           ++    V   + SR+A   V  +++N  ++ +EV F ++IP  AFI++F     +  + G
Sbjct: 50  LMTEFSVKSTIISRYAFTTVACRMLNRGSEDQEVTFQMQIPAAAFITNFTALIGDKVYQG 109

Query: 336 DI--KDKVTAWKQYRKAAISGENSGLVRASGRTMEQFAIHVTIGPRSKATFQLTYEEVLR 509
           +I  ++K    K   K   + E++G      +  E F     +  + KA F L+YEE+L+
Sbjct: 110 EITEREKRNGDKVKEKRNKTIEDNG-----EKGTETFRASAVLPSKDKAAFLLSYEELLQ 164

Query: 510 RKLTQYDIVIKVKPKQLVQHFEIDVDIFEPQGISKLDAQASFLSKEAAA----------- 656
           R+L +Y+ V+ V+P+QLV    ++V + E  GI++L+      S++  +           
Sbjct: 165 RRLGKYEHVVSVRPQQLVGRLTVEVTVLERPGIAELEVLGLQNSRQRGSGRGPDDSGPPP 224

Query: 657 -QLIKKSFSGKKGHVLFRPTVGQQQSCPTCSTTLLNGDFKVTYDVNREK-LCDLLVANNY 830
             +I ++ +  K  V+F+P+V QQ      +   + GDF V YDVNRE+ + D+ V + Y
Sbjct: 225 STVINQNETFAK--VVFKPSVVQQAKI---AQNGILGDFIVRYDVNREQSIGDIQVLDGY 279

Query: 831 FAHFFAPQNLTKLNKNVVFVIDISSSMEGQKVKQTKKALLKILSDLKPGDYFHL 992
           F H+FAP++L  L KNVVFV+D S+SM G K++QTK AL  IL DL+P D+F++
Sbjct: 280 FVHYFAPKDLPPLPKNVVFVLDSSASMVGTKLRQTKDALFTILHDLRPQDHFNI 333


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 37,534,520
Number of extensions: 1030358
Number of successful extensions: 4210
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 4184
Number of HSP's successfully gapped: 5
Length of query: 331
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 228
Effective length of database: 14,273,310
Effective search space: 3254314680
Effective search space used: 3254314680
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002998
         (994 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_533794.2| PREDICTED: similar to Inter-alpha-trypsin inhib...   511   e-145
Alignment   gi|XP_548489.2| PREDICTED: similar to inter-alpha (globulin) in...   300   1e-81
Alignment   gi|XP_848765.1| PREDICTED: similar to inter-alpha (globulin) in...   254   9e-68
Alignment   gi|XP_535195.2| PREDICTED: similar to inter-alpha globulin inhi...   223   3e-58
Alignment   gi|XP_541846.2| PREDICTED: similar to inter-alpha (globulin) in...   167   1e-41
Alignment   gi|XP_544264.2| PREDICTED: similar to inter-alpha trypsin inhib...   163   3e-40

>ref|XP_533794.2| PREDICTED: similar to Inter-alpha-trypsin inhibitor heavy chain H1
           precursor (ITI heavy chain H1) (Inter-alpha-inhibitor
           heavy chain 1) (Inter-alpha-trypsin inhibitor complex
           component III) (Serum-derived hyaluronan-associated
           protein) (SHAP) [Canis familiaris].
          Length = 910

 Score =  511 bits (1316), Expect = e-145
 Identities = 258/329 (78%), Positives = 284/329 (86%), Gaps = 7/329 (2%)
 Frame = +3

Query: 27  MDGTMXXXXXXXXXXXXXXXXXAMPTQGSPTDSTKGNK-------AVNGVVIRSLKVNCK 185
           MDG M                  MPTQGSPT   K NK       AV+GV IRSLKVNCK
Sbjct: 1   MDGAMGLRALLCVYLASLLVLQGMPTQGSPTGRPKVNKKRQTLDTAVDGVTIRSLKVNCK 60

Query: 186 VTSRFAHYVVTSQVVNNANKAKEVAFDVEIPKTAFISDFAITADENTFVGDIKDKVTAWK 365
           VTSRFAHYV+TSQVVNNA++AKE++FDVEIPKTAFISDFAITAD + F+GDIKDKVTAWK
Sbjct: 61  VTSRFAHYVITSQVVNNADEAKEISFDVEIPKTAFISDFAITADGSAFIGDIKDKVTAWK 120

Query: 366 QYRKAAISGENSGLVRASGRTMEQFAIHVTIGPRSKATFQLTYEEVLRRKLTQYDIVIKV 545
           QYRKAAISGEN+GLVRASGRTMEQF IH+TIGPRSKATF+LTYEEVL+R+L QYDIVIKV
Sbjct: 121 QYRKAAISGENAGLVRASGRTMEQFTIHLTIGPRSKATFRLTYEEVLKRRLMQYDIVIKV 180

Query: 546 KPKQLVQHFEIDVDIFEPQGISKLDAQASFLSKEAAAQLIKKSFSGKKGHVLFRPTVGQQ 725
           KPKQLV HFEIDVDIFEPQGISKLDA ASFLS + A+QL+KKSFSGK+G VLF PTV QQ
Sbjct: 181 KPKQLVHHFEIDVDIFEPQGISKLDAHASFLSNDLASQLVKKSFSGKQGRVLFHPTVSQQ 240

Query: 726 QSCPTCSTTLLNGDFKVTYDVNREKLCDLLVANNYFAHFFAPQNLTKLNKNVVFVIDISS 905
           QSCPTCST+LLNGDFKVTYDVNR++LCDLLVANN+FAHFFAPQNLT +NKNVVFVIDIS+
Sbjct: 241 QSCPTCSTSLLNGDFKVTYDVNRDQLCDLLVANNHFAHFFAPQNLTNMNKNVVFVIDIST 300

Query: 906 SMEGQKVKQTKKALLKILSDLKPGDYFHL 992
           SMEGQKVKQTK+ALLKIL D++PGDYF L
Sbjct: 301 SMEGQKVKQTKEALLKILGDMRPGDYFDL 329


>ref|XP_548489.2| PREDICTED: similar to inter-alpha (globulin) inhibitor H3 [Canis
           familiaris].
          Length = 897

 Score =  300 bits (769), Expect = 1e-81
 Identities = 142/248 (57%), Positives = 192/248 (77%)
 Frame = +3

Query: 246 AKEVAFDVEIPKTAFISDFAITADENTFVGDIKDKVTAWKQYRKAAISGENSGLVRASGR 425
           AKEV+FDVE+PKTAFI++F +T D  T+ G++K+K  A KQY KA   G+ +GLV+ASGR
Sbjct: 80  AKEVSFDVELPKTAFITNFTLTIDGVTYPGNVKEKEVAKKQYEKAVSQGKTAGLVKASGR 139

Query: 426 TMEQFAIHVTIGPRSKATFQLTYEEVLRRKLTQYDIVIKVKPKQLVQHFEIDVDIFEPQG 605
            +E+F + V +   SK TF+LTYEE+L+R+  +Y++ +KV+PKQLV+HFEI+ DI+EPQG
Sbjct: 140 KLEKFTVSVNVAAGSKVTFELTYEELLKRRKGKYEMYLKVQPKQLVKHFEIEADIYEPQG 199

Query: 606 ISKLDAQASFLSKEAAAQLIKKSFSGKKGHVLFRPTVGQQQSCPTCSTTLLNGDFKVTYD 785
           IS LDA+ASF++ +     + KSFSGKKG V F+P++ QQ+SCPTC+ +LLNGDF +TYD
Sbjct: 200 ISTLDAEASFITNDLLGSALTKSFSGKKGRVSFKPSLDQQRSCPTCTDSLLNGDFIITYD 259

Query: 786 VNREKLCDLLVANNYFAHFFAPQNLTKLNKNVVFVIDISSSMEGQKVKQTKKALLKILSD 965
           VNRE   ++ + N YF HFFAPQ L  + KNVVFVID+S SM G+K++QTK ALLKIL D
Sbjct: 260 VNRESPANVQIVNGYFVHFFAPQGLPVVPKNVVFVIDVSGSMHGRKMEQTKDALLKILGD 319

Query: 966 LKPGDYFH 989
           +K  DY +
Sbjct: 320 MKGEDYLN 327


>ref|XP_848765.1| PREDICTED: similar to inter-alpha (globulin) inhibitor H4 (plasma
           Kallikrein-sensitive glycoprotein) [Canis familiaris].
          Length = 826

 Score =  254 bits (649), Expect = 9e-68
 Identities = 133/285 (46%), Positives = 194/285 (68%), Gaps = 3/285 (1%)
 Frame = +3

Query: 147 NGVVIRSLKVNCKVTSRFAHYVVTSQVVNNANKAKEVAFDVEIPKTAFISDFAITADENT 326
           N + I S  V+ KV+SRFAH VVTS+VVN A   +E  F VE+PK AFI++F++  +  T
Sbjct: 31  NDISIYSFTVDSKVSSRFAHTVVTSRVVNRAETVQEATFQVELPKRAFITNFSMIIEGVT 90

Query: 327 FVGDIKDKVTAWKQYRKAAISGENSGLVRASGRTMEQFAIHVTIGPRSKATFQLTYEEVL 506
           + G+IK+K  A +QY  A   GE++GLV+A+GR  EQF + V + P +K TF+L YEE+L
Sbjct: 91  YPGNIKEKAAAQEQYSAAVARGESAGLVKATGRKTEQFQVSVNVAPAAKVTFELVYEELL 150

Query: 507 RRKLTQYDIVIKVKPKQLVQHFEIDVDIFEPQGISKLDAQASFLSKEAAAQLIKKSFSGK 686
           +R+L  Y++++KV+P+QLV+H ++D+ IFEPQGIS L  +++F++ E  A  +  S +  
Sbjct: 151 KRQLGVYELLLKVQPQQLVKHLQMDIHIFEPQGISFLKTESTFMTSE-LANALTISQNKT 209

Query: 687 KGHVLFRP--TVGQQQSCPTCSTTLLNGDFKVTYDVNRE-KLCDLLVANNYFAHFFAPQN 857
           K H+ F+P  T GQ          +L+G+F V YDVNR      + + N YF H+FAP+ 
Sbjct: 210 KAHIQFKPQKTAGQLDK-------VLDGNFIVRYDVNRTLSGGSIQIENGYFVHYFAPEG 262

Query: 858 LTKLNKNVVFVIDISSSMEGQKVKQTKKALLKILSDLKPGDYFHL 992
           L  + KNV+FVID S SM G+K++QT++AL+KIL DLKP D F+L
Sbjct: 263 LPTIPKNVIFVIDKSGSMSGRKIQQTREALIKILDDLKPNDQFNL 307


>ref|XP_535195.2| PREDICTED: similar to inter-alpha globulin inhibitor H2 polypeptide
           [Canis familiaris].
          Length = 946

 Score =  223 bits (567), Expect = 3e-58
 Identities = 120/279 (43%), Positives = 172/279 (61%), Gaps = 1/279 (0%)
 Frame = +3

Query: 153 VVIRSLKVNCKVTSRFAHYVVTSQVVNNANKAKEVAFDVEIPKTAFISDFAITADENTFV 332
           V + S KV   +TSR A+ ++ +++VNN+ + + V FDV+IPK AFIS+F++T D  TF 
Sbjct: 70  VTLYSYKVQSTITSRMANTIIQTKLVNNSPQPQNVVFDVQIPKGAFISNFSMTVDGTTFT 129

Query: 333 GDIKDKVTAWKQYRKAAISGENSGLVRASGRTMEQFAIHVTIGPRSKATFQLTYEEVLRR 512
             I++K      Y +A   G+ +GLVR+    ME F   V I P +K  F+L Y+EV  R
Sbjct: 130 SSIREKTVGRALYSQARAKGKTTGLVRSRALDMENFQTEVNILPGAKVQFELHYQEVKWR 189

Query: 513 KLTQYDIVIKVKPKQLVQHFEIDVDIFEPQGISKLDAQASFLSKEAAAQLIKKSFSGKKG 692
           KL  Y+  + ++P +L +H E+DV + EPQGI  L    +F        +I K    +K 
Sbjct: 190 KLGSYEHRLHLQPGRLAKHLEVDVWVIEPQGIRFLHVPDTFDGHFDGVPVISK--GQQKA 247

Query: 693 HVLFRPTVGQQQSCPTCSTTLLNGDFKVTYDVNR-EKLCDLLVANNYFAHFFAPQNLTKL 869
           HV F+P+V +Q+ C  CS T ++G+  V YDVNR EK  +L V N YF HFFAP+NL  +
Sbjct: 248 HVSFKPSVARQRKCSNCSETAVDGELVVMYDVNREEKAGELEVFNGYFVHFFAPENLDPI 307

Query: 870 NKNVVFVIDISSSMEGQKVKQTKKALLKILSDLKPGDYF 986
            KN++FVID+S SM G K+KQT +A+  IL DL+  D F
Sbjct: 308 PKNILFVIDVSGSMWGIKMKQTVEAMKTILDDLRAEDQF 346


>ref|XP_541846.2| PREDICTED: similar to inter-alpha (globulin) inhibitor H3 [Canis
           familiaris].
          Length = 243

 Score =  167 bits (424), Expect = 1e-41
 Identities = 78/144 (54%), Positives = 112/144 (77%)
 Frame = +3

Query: 147 NGVVIRSLKVNCKVTSRFAHYVVTSQVVNNANKAKEVAFDVEIPKTAFISDFAITADENT 326
           NG+ + S K++CKVTSRFAH VVT++ V  A+ AKEV+FDVE+PKTAFI++F +T D  T
Sbjct: 41  NGIEVYSTKISCKVTSRFAHNVVTTRAVYRADTAKEVSFDVELPKTAFITNFTLTIDGVT 100

Query: 327 FVGDIKDKVTAWKQYRKAAISGENSGLVRASGRTMEQFAIHVTIGPRSKATFQLTYEEVL 506
           + G++K+K  A KQY KA   G+ +GLV+ASGR +E+F + V +   SK TF+LTYEE+L
Sbjct: 101 YPGNVKEKEVAKKQYEKAVSQGKTAGLVKASGRKLEKFTVSVNVAAGSKVTFELTYEELL 160

Query: 507 RRKLTQYDIVIKVKPKQLVQHFEI 578
           +R+  +Y++ +KV+PKQLV+HFE+
Sbjct: 161 KRRKGKYEMYLKVQPKQLVKHFEV 184


>ref|XP_544264.2| PREDICTED: similar to inter-alpha trypsin inhibitor heavy chain
           precursor 5 isoform 1 [Canis familiaris].
          Length = 893

 Score =  163 bits (412), Expect = 3e-40
 Identities = 103/294 (35%), Positives = 167/294 (56%), Gaps = 15/294 (5%)
 Frame = +3

Query: 156 VIRSLKVNCKVTSRFAHYVVTSQVVNNANKAKEVAFDVEIPKTAFISDFAITADENTFVG 335
           ++    V   + SR+A   V+ +++N A++ +E+ F ++IP  AFI++F +   +  F G
Sbjct: 7   LMTEFSVKSTIISRYAFTTVSCRLLNRASEDQEIEFQMQIPAAAFITNFTMLLGDQVFQG 66

Query: 336 DI--KDKVTAWKQYRKAAISGENSGLVRASGRTMEQFAIHVTIGPRSKATFQLTYEEVLR 509
           +I  ++K    K   K   + E++G      +  E F   V I  + KA F L+YEE+L+
Sbjct: 67  EITEREKKNGDKLKEKRNKTSEDNG-----EKGTEMFRASVVIPSKDKAAFFLSYEELLQ 121

Query: 510 RKLTQYDIVIKVKPKQLVQHFEIDVDIFEPQGISKLDAQASFLSKEAAA----------- 656
           R+L +Y+ VI V+P+QLV    ++V+I E  G+  L+      S++  +           
Sbjct: 122 RRLGKYEHVISVRPQQLVGRLMVEVNILERSGLESLEVLPLQHSRQKGSGRGEDDSGPPP 181

Query: 657 -QLIKKSFSGKKGHVLFRPTVGQQQSCPTCSTTLLNGDFKVTYDVNREK-LCDLLVANNY 830
             +I ++ +  K  V F+P+V QQ      +   + GDF + YDVNRE+ + D+ V N Y
Sbjct: 182 STVINQNDTFAK--VTFKPSVVQQAKI---AQNGILGDFIIRYDVNREQSIGDIEVLNGY 236

Query: 831 FAHFFAPQNLTKLNKNVVFVIDISSSMEGQKVKQTKKALLKILSDLKPGDYFHL 992
           F H+FAP++L  L KNVVFV+D S+SM G K++QTK AL  IL DL+P D+F +
Sbjct: 237 FVHYFAPRDLPPLPKNVVFVLDSSASMVGTKLRQTKDALFTILHDLRPQDHFSI 290


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 39,127,183
Number of extensions: 1054084
Number of successful extensions: 4126
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 4102
Number of HSP's successfully gapped: 6
Length of query: 331
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 228
Effective length of database: 15,440,896
Effective search space: 3520524288
Effective search space used: 3520524288
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002998
         (994 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_002206.2| inter-alpha-trypsin inhibitor heavy chain H1 is...   495   e-140
Alignment   gi|NP_002208.3| inter-alpha-trypsin inhibitor heavy chain H3 pr...   338   3e-93
Alignment   gi|NP_001159906.1| inter-alpha-trypsin inhibitor heavy chain H1...   321   7e-88
Alignment   gi|NP_001159921.1| inter-alpha-trypsin inhibitor heavy chain H4...   270   2e-72
Alignment   gi|NP_002209.2| inter-alpha-trypsin inhibitor heavy chain H4 is...   270   2e-72
Alignment   gi|NP_002207.2| inter-alpha-trypsin inhibitor heavy chain H2 [H...   230   2e-60
Alignment   gi|NP_940912.1| inter-alpha-trypsin inhibitor heavy chain H5-li...   176   4e-44
Alignment   gi|NP_085046.5| inter-alpha-trypsin inhibitor heavy chain H5 is...   155   4e-38
Alignment   gi|NP_001001851.1| inter-alpha-trypsin inhibitor heavy chain H5...   155   4e-38
Alignment   gi|NP_116206.4| inter-alpha-trypsin inhibitor heavy chain H5 is...    94   3e-19

>ref|NP_002206.2| inter-alpha-trypsin inhibitor heavy chain H1 isoform a [Homo
           sapiens].
          Length = 911

 Score =  495 bits (1275), Expect = e-140
 Identities = 249/307 (81%), Positives = 273/307 (88%), Gaps = 7/307 (2%)
 Frame = +3

Query: 93  AMPTQGSPTDSTKGNK-------AVNGVVIRSLKVNCKVTSRFAHYVVTSQVVNNANKAK 251
           AMP  GS T  +K ++       AV+GV IRSLKVNCKVTSRFAHYVVTSQVVN AN+A+
Sbjct: 24  AMPALGSATGRSKSSEKRQAVDTAVDGVFIRSLKVNCKVTSRFAHYVVTSQVVNTANEAR 83

Query: 252 EVAFDVEIPKTAFISDFAITADENTFVGDIKDKVTAWKQYRKAAISGENSGLVRASGRTM 431
           EVAFD+EIPKTAFISDFA+TAD N F+GDIKDKVTAWKQYRKAAISGEN+GLVRASGRTM
Sbjct: 84  EVAFDLEIPKTAFISDFAVTADGNAFIGDIKDKVTAWKQYRKAAISGENAGLVRASGRTM 143

Query: 432 EQFAIHVTIGPRSKATFQLTYEEVLRRKLTQYDIVIKVKPKQLVQHFEIDVDIFEPQGIS 611
           EQF IH+T+ P+SK TFQLTYEEVL+R   QY+IVIKVKPKQLV HFEIDVDIFEPQGIS
Sbjct: 144 EQFTIHLTVNPQSKVTFQLTYEEVLKRNHMQYEIVIKVKPKQLVHHFEIDVDIFEPQGIS 203

Query: 612 KLDAQASFLSKEAAAQLIKKSFSGKKGHVLFRPTVGQQQSCPTCSTTLLNGDFKVTYDVN 791
           KLDAQASFL KE AAQ IKKSFSGKKGHVLFRPTV QQQSCPTCST+LLNG FKVTYDV+
Sbjct: 204 KLDAQASFLPKELAAQTIKKSFSGKKGHVLFRPTVSQQQSCPTCSTSLLNGHFKVTYDVS 263

Query: 792 REKLCDLLVANNYFAHFFAPQNLTKLNKNVVFVIDISSSMEGQKVKQTKKALLKILSDLK 971
           R+K+CDLLVANN+FAHFFAPQNLT +NKNVVFVIDIS SM GQKVKQTK+ALLKIL D++
Sbjct: 264 RDKICDLLVANNHFAHFFAPQNLTNMNKNVVFVIDISGSMRGQKVKQTKEALLKILGDMQ 323

Query: 972 PGDYFHL 992
           PGDYF L
Sbjct: 324 PGDYFDL 330


>ref|NP_002208.3| inter-alpha-trypsin inhibitor heavy chain H3 preproprotein [Homo
           sapiens].
          Length = 890

 Score =  338 bits (868), Expect = 3e-93
 Identities = 162/281 (57%), Positives = 217/281 (77%)
 Frame = +3

Query: 147 NGVVIRSLKVNCKVTSRFAHYVVTSQVVNNANKAKEVAFDVEIPKTAFISDFAITADENT 326
           NG+ + S K+N KVTSRFAH VVT + VN A+ AKEV+FDVE+PKTAFI++F +T D  T
Sbjct: 41  NGIEVYSTKINSKVTSRFAHNVVTMRAVNRADTAKEVSFDVELPKTAFITNFTLTIDGVT 100

Query: 327 FVGDIKDKVTAWKQYRKAAISGENSGLVRASGRTMEQFAIHVTIGPRSKATFQLTYEEVL 506
           + G++K+K  A KQY KA   G+ +GLV+ASGR +E+F + V +   SK TF+LTYEE+L
Sbjct: 101 YPGNVKEKEVAKKQYEKAVSQGKTAGLVKASGRKLEKFTVSVNVAAGSKVTFELTYEELL 160

Query: 507 RRKLTQYDIVIKVKPKQLVQHFEIDVDIFEPQGISKLDAQASFLSKEAAAQLIKKSFSGK 686
           +R   +Y++ +KV+PKQLV+HFEI+VDIFEPQGIS LDA+ASF++ +     + KSFSGK
Sbjct: 161 KRHKGKYEMYLKVQPKQLVKHFEIEVDIFEPQGISMLDAEASFITNDLLGSALTKSFSGK 220

Query: 687 KGHVLFRPTVGQQQSCPTCSTTLLNGDFKVTYDVNREKLCDLLVANNYFAHFFAPQNLTK 866
           KGHV F+P++ QQ+SCPTC+ +LLNGDF +TYDVNRE   ++ + N YF HFFAPQ L  
Sbjct: 221 KGHVSFKPSLDQQRSCPTCTDSLLNGDFTITYDVNRESPGNVQIVNGYFVHFFAPQGLPV 280

Query: 867 LNKNVVFVIDISSSMEGQKVKQTKKALLKILSDLKPGDYFH 989
           + KNV FVIDIS SM G+K++QTK+ALL+IL D++  DY +
Sbjct: 281 VPKNVAFVIDISGSMAGRKLEQTKEALLRILEDMQEEDYLN 321


>ref|NP_001159906.1| inter-alpha-trypsin inhibitor heavy chain H1 isoform b [Homo
           sapiens].
          Length = 769

 Score =  321 bits (822), Expect = 7e-88
 Identities = 157/188 (83%), Positives = 171/188 (90%)
 Frame = +3

Query: 429 MEQFAIHVTIGPRSKATFQLTYEEVLRRKLTQYDIVIKVKPKQLVQHFEIDVDIFEPQGI 608
           MEQF IH+T+ P+SK TFQLTYEEVL+R   QY+IVIKVKPKQLV HFEIDVDIFEPQGI
Sbjct: 1   MEQFTIHLTVNPQSKVTFQLTYEEVLKRNHMQYEIVIKVKPKQLVHHFEIDVDIFEPQGI 60

Query: 609 SKLDAQASFLSKEAAAQLIKKSFSGKKGHVLFRPTVGQQQSCPTCSTTLLNGDFKVTYDV 788
           SKLDAQASFL KE AAQ IKKSFSGKKGHVLFRPTV QQQSCPTCST+LLNG FKVTYDV
Sbjct: 61  SKLDAQASFLPKELAAQTIKKSFSGKKGHVLFRPTVSQQQSCPTCSTSLLNGHFKVTYDV 120

Query: 789 NREKLCDLLVANNYFAHFFAPQNLTKLNKNVVFVIDISSSMEGQKVKQTKKALLKILSDL 968
           +R+K+CDLLVANN+FAHFFAPQNLT +NKNVVFVIDIS SM GQKVKQTK+ALLKIL D+
Sbjct: 121 SRDKICDLLVANNHFAHFFAPQNLTNMNKNVVFVIDISGSMRGQKVKQTKEALLKILGDM 180

Query: 969 KPGDYFHL 992
           +PGDYF L
Sbjct: 181 QPGDYFDL 188


>ref|NP_001159921.1| inter-alpha-trypsin inhibitor heavy chain H4 isoform 2 precursor
           [Homo sapiens].
          Length = 900

 Score =  270 bits (690), Expect = 2e-72
 Identities = 134/283 (47%), Positives = 199/283 (70%), Gaps = 1/283 (0%)
 Frame = +3

Query: 147 NGVVIRSLKVNCKVTSRFAHYVVTSQVVNNANKAKEVAFDVEIPKTAFISDFAITADENT 326
           NG+ I SL V+ +V+SRFAH VVTS+VVN AN  +E  F +E+PK AFI++F++  D  T
Sbjct: 31  NGIDIYSLTVDSRVSSRFAHTVVTSRVVNRANTVQEATFQMELPKKAFITNFSMIIDGMT 90

Query: 327 FVGDIKDKVTAWKQYRKAAISGENSGLVRASGRTMEQFAIHVTIGPRSKATFQLTYEEVL 506
           + G IK+K  A  QY  A   G+++GLV+A+GR MEQF + V++ P +K TF+L YEE+L
Sbjct: 91  YPGIIKEKAEAQAQYSAAVAKGKSAGLVKATGRNMEQFQVSVSVAPNAKITFELVYEELL 150

Query: 507 RRKLTQYDIVIKVKPKQLVQHFEIDVDIFEPQGISKLDAQASFLSKEAAAQLIKKSFSGK 686
           +R+L  Y++++KV+P+QLV+H ++D+ IFEPQGIS L+ +++F++ +    L     +  
Sbjct: 151 KRRLGVYELLLKVRPQQLVKHLQMDIHIFEPQGISFLETESTFMTNQLVDALTTWQ-NKT 209

Query: 687 KGHVLFRPTVGQQQSCPTCSTTLLNGDFKVTYDVNRE-KLCDLLVANNYFAHFFAPQNLT 863
           K H+ F+PT+ QQQ  P    T+L+G+  + YDV+R      + + N YF H+FAP+ LT
Sbjct: 210 KAHIRFKPTLSQQQKSPEQQETVLDGNLIIRYDVDRAISGGSIQIENGYFVHYFAPEGLT 269

Query: 864 KLNKNVVFVIDISSSMEGQKVKQTKKALLKILSDLKPGDYFHL 992
            + KNVVFVID S SM G+K++QT++AL+KIL DL P D F+L
Sbjct: 270 TMPKNVVFVIDKSGSMSGRKIQQTREALIKILDDLSPRDQFNL 312


>ref|NP_002209.2| inter-alpha-trypsin inhibitor heavy chain H4 isoform 1 precursor
           [Homo sapiens].
          Length = 930

 Score =  270 bits (690), Expect = 2e-72
 Identities = 134/283 (47%), Positives = 199/283 (70%), Gaps = 1/283 (0%)
 Frame = +3

Query: 147 NGVVIRSLKVNCKVTSRFAHYVVTSQVVNNANKAKEVAFDVEIPKTAFISDFAITADENT 326
           NG+ I SL V+ +V+SRFAH VVTS+VVN AN  +E  F +E+PK AFI++F++  D  T
Sbjct: 31  NGIDIYSLTVDSRVSSRFAHTVVTSRVVNRANTVQEATFQMELPKKAFITNFSMIIDGMT 90

Query: 327 FVGDIKDKVTAWKQYRKAAISGENSGLVRASGRTMEQFAIHVTIGPRSKATFQLTYEEVL 506
           + G IK+K  A  QY  A   G+++GLV+A+GR MEQF + V++ P +K TF+L YEE+L
Sbjct: 91  YPGIIKEKAEAQAQYSAAVAKGKSAGLVKATGRNMEQFQVSVSVAPNAKITFELVYEELL 150

Query: 507 RRKLTQYDIVIKVKPKQLVQHFEIDVDIFEPQGISKLDAQASFLSKEAAAQLIKKSFSGK 686
           +R+L  Y++++KV+P+QLV+H ++D+ IFEPQGIS L+ +++F++ +    L     +  
Sbjct: 151 KRRLGVYELLLKVRPQQLVKHLQMDIHIFEPQGISFLETESTFMTNQLVDALTTWQ-NKT 209

Query: 687 KGHVLFRPTVGQQQSCPTCSTTLLNGDFKVTYDVNRE-KLCDLLVANNYFAHFFAPQNLT 863
           K H+ F+PT+ QQQ  P    T+L+G+  + YDV+R      + + N YF H+FAP+ LT
Sbjct: 210 KAHIRFKPTLSQQQKSPEQQETVLDGNLIIRYDVDRAISGGSIQIENGYFVHYFAPEGLT 269

Query: 864 KLNKNVVFVIDISSSMEGQKVKQTKKALLKILSDLKPGDYFHL 992
            + KNVVFVID S SM G+K++QT++AL+KIL DL P D F+L
Sbjct: 270 TMPKNVVFVIDKSGSMSGRKIQQTREALIKILDDLSPRDQFNL 312


>ref|NP_002207.2| inter-alpha-trypsin inhibitor heavy chain H2 [Homo sapiens].
          Length = 946

 Score =  230 bits (586), Expect = 2e-60
 Identities = 127/292 (43%), Positives = 178/292 (60%), Gaps = 1/292 (0%)
 Frame = +3

Query: 114 PTDSTKGNKAVNGVVIRSLKVNCKVTSRFAHYVVTSQVVNNANKAKEVAFDVEIPKTAFI 293
           P +S +  + V+ V + S KV   +TSR A  ++ S+VVNN+ + + V FDV+IPK AFI
Sbjct: 57  PGESEEMMEEVDQVTLYSYKVQSTITSRMATTMIQSKVVNNSPQPQNVVFDVQIPKGAFI 116

Query: 294 SDFAITADENTFVGDIKDKVTAWKQYRKAAISGENSGLVRASGRTMEQFAIHVTIGPRSK 473
           S+F++T D  TF   IK+K      Y +A   G+ +GLVR+S   ME F   V + P +K
Sbjct: 117 SNFSMTVDGKTFRSSIKEKTVGRALYAQARAKGKTAGLVRSSALDMENFRTEVNVLPGAK 176

Query: 474 ATFQLTYEEVLRRKLTQYDIVIKVKPKQLVQHFEIDVDIFEPQGISKLDAQASFLSKEAA 653
             F+L Y+EV  RKL  Y+  I ++P +L +H E+DV + EPQG+  L    +F      
Sbjct: 177 VQFELHYQEVKWRKLGSYEHRIYLQPGRLAKHLEVDVWVIEPQGLRFLHVPDTFEGHFDG 236

Query: 654 AQLIKKSFSGKKGHVLFRPTVGQQQSCPTCSTTLLNGDFKVTYDVNR-EKLCDLLVANNY 830
             +I K    +K HV F+PTV QQ+ CP C  T ++G+  V YDV R EK  +L V N Y
Sbjct: 237 VPVISK--GQQKAHVSFKPTVAQQRICPNCRETAVDGELVVLYDVKREEKAGELEVFNGY 294

Query: 831 FAHFFAPQNLTKLNKNVVFVIDISSSMEGQKVKQTKKALLKILSDLKPGDYF 986
           F HFFAP NL  + KN++FVID+S SM G K+KQT +A+  IL DL+  D+F
Sbjct: 295 FVHFFAPDNLDPIPKNILFVIDVSGSMWGVKMKQTVEAMKTILDDLRAEDHF 346


>ref|NP_940912.1| inter-alpha-trypsin inhibitor heavy chain H5-like protein precursor
           [Homo sapiens].
          Length = 1313

 Score =  176 bits (445), Expect = 4e-44
 Identities = 107/309 (34%), Positives = 173/309 (55%), Gaps = 13/309 (4%)
 Frame = +3

Query: 105 QGSPTDSTKGNKAVNGVVIRSLKVNCKVTSRFAHYVVTSQVVNNANKAKEVAFDVEIPKT 284
           QG P  ++   K    +++ S  +   V SR+AH +VTS + N   +A E  FD+++P  
Sbjct: 23  QGPPVPASSSTK----LLMTSYSMRSTVVSRYAHTLVTSVLFNPHAEAHEAIFDLDLPHL 78

Query: 285 AFISDFAITADENTFVGDIKDKVTAWKQYRKAAISGENSGLVRASGRTMEQFAIHVTIGP 464
           AFIS+F +T +   ++ ++K+K  A K Y +A   G+ +  V    R  E+F I  ++  
Sbjct: 79  AFISNFTMTINNKVYIAEVKEKHQAKKIYEEAHQQGKTAAHVGIRDRESEKFRISTSLAA 138

Query: 465 RSKATFQLTYEEVLRRKLTQYDIVIKVKPKQLVQHFEIDVDIFEPQGIS----------- 611
            ++ TF L YEE+L+R   QY +V+ ++P QLV+   I+V + E  GIS           
Sbjct: 139 GTEVTFSLAYEELLQRHQGQYQLVVSLRPGQLVKRLSIEVTVSERTGISYVHIPPLRTGR 198

Query: 612 -KLDAQASFLSKEAAAQLIKKSFSGKKGHVLFRPTVGQQQSCPTCSTTLLNGDFKVTYDV 788
            + +A AS +    + ++ +     +   + + PT+  Q S    S + +  DF V YDV
Sbjct: 199 LRTNAHASEVDSPPSTRIERGETCVR---ITYCPTLQDQSS---ISGSGIMADFLVQYDV 252

Query: 789 NREKLC-DLLVANNYFAHFFAPQNLTKLNKNVVFVIDISSSMEGQKVKQTKKALLKILSD 965
             E +  D+ + ++YF H+FAP+ L  + KNVVFVID+SSSM G K++QTK A+  ILSD
Sbjct: 253 VMEDIIGDVQIYDDYFIHYFAPRGLPPMEKNVVFVIDVSSSMFGTKMEQTKTAMNVILSD 312

Query: 966 LKPGDYFHL 992
           L+  DYF++
Sbjct: 313 LQANDYFNI 321


>ref|NP_085046.5| inter-alpha-trypsin inhibitor heavy chain H5 isoform 1 precursor
           [Homo sapiens].
          Length = 942

 Score =  155 bits (393), Expect = 4e-38
 Identities = 99/293 (33%), Positives = 163/293 (55%), Gaps = 14/293 (4%)
 Frame = +3

Query: 156 VIRSLKVNCKVTSRFAHYVVTSQVVNNANKAKEVAFDVEIPKTAFISDFAITADENTFVG 335
           ++    V   + SR+A   V+ +++N A++ +++ F ++IP  AFI++F +   +  + G
Sbjct: 50  LMTEFSVKSTIISRYAFTTVSCRMLNRASEDQDIEFQMQIPAAAFITNFTMLIGDKVYQG 109

Query: 336 DI--KDKVTAWKQYRKAAISGENSGLVRASGRTMEQFAIHVTIGPRSKATFQLTYEEVLR 509
           +I  ++K +  +   K   + E +G      +  E F     I  + KA F L+YEE+L+
Sbjct: 110 EITEREKKSGDRVKEKRNKTTEENG-----EKGTEIFRASAVIPSKDKAAFFLSYEELLQ 164

Query: 510 RKLTQYDIVIKVKPKQLVQHFEIDVDIFEPQGISKLDAQASFLSKEAAAQLIKKSFSGKK 689
           R+L +Y+  I V+P+QL     +DV+I E  GI+ L+      S++  +   +   SG  
Sbjct: 165 RRLGKYEHSISVRPQQLSGRLSVDVNILESAGIASLEVLPLHNSRQRGSGRGEDD-SGPP 223

Query: 690 -----------GHVLFRPTVGQQQSCPTCSTTLLNGDFKVTYDVNREK-LCDLLVANNYF 833
                       +++F+PTV QQ      +   + GDF + YDVNRE+ + D+ V N YF
Sbjct: 224 PSTVINQNETFANIIFKPTVVQQARI---AQNGILGDFIIRYDVNREQSIGDIQVLNGYF 280

Query: 834 AHFFAPQNLTKLNKNVVFVIDISSSMEGQKVKQTKKALLKILSDLKPGDYFHL 992
            H+FAP++L  L KNVVFV+D S+SM G K++QTK AL  IL DL+P D F +
Sbjct: 281 VHYFAPKDLPPLPKNVVFVLDSSASMVGTKLRQTKDALFTILHDLRPQDRFSI 333


>ref|NP_001001851.1| inter-alpha-trypsin inhibitor heavy chain H5 isoform 3 precursor
           [Homo sapiens].
          Length = 702

 Score =  155 bits (393), Expect = 4e-38
 Identities = 99/293 (33%), Positives = 163/293 (55%), Gaps = 14/293 (4%)
 Frame = +3

Query: 156 VIRSLKVNCKVTSRFAHYVVTSQVVNNANKAKEVAFDVEIPKTAFISDFAITADENTFVG 335
           ++    V   + SR+A   V+ +++N A++ +++ F ++IP  AFI++F +   +  + G
Sbjct: 50  LMTEFSVKSTIISRYAFTTVSCRMLNRASEDQDIEFQMQIPAAAFITNFTMLIGDKVYQG 109

Query: 336 DI--KDKVTAWKQYRKAAISGENSGLVRASGRTMEQFAIHVTIGPRSKATFQLTYEEVLR 509
           +I  ++K +  +   K   + E +G      +  E F     I  + KA F L+YEE+L+
Sbjct: 110 EITEREKKSGDRVKEKRNKTTEENG-----EKGTEIFRASAVIPSKDKAAFFLSYEELLQ 164

Query: 510 RKLTQYDIVIKVKPKQLVQHFEIDVDIFEPQGISKLDAQASFLSKEAAAQLIKKSFSGKK 689
           R+L +Y+  I V+P+QL     +DV+I E  GI+ L+      S++  +   +   SG  
Sbjct: 165 RRLGKYEHSISVRPQQLSGRLSVDVNILESAGIASLEVLPLHNSRQRGSGRGEDD-SGPP 223

Query: 690 -----------GHVLFRPTVGQQQSCPTCSTTLLNGDFKVTYDVNREK-LCDLLVANNYF 833
                       +++F+PTV QQ      +   + GDF + YDVNRE+ + D+ V N YF
Sbjct: 224 PSTVINQNETFANIIFKPTVVQQARI---AQNGILGDFIIRYDVNREQSIGDIQVLNGYF 280

Query: 834 AHFFAPQNLTKLNKNVVFVIDISSSMEGQKVKQTKKALLKILSDLKPGDYFHL 992
            H+FAP++L  L KNVVFV+D S+SM G K++QTK AL  IL DL+P D F +
Sbjct: 281 VHYFAPKDLPPLPKNVVFVLDSSASMVGTKLRQTKDALFTILHDLRPQDRFSI 333


>ref|NP_116206.4| inter-alpha-trypsin inhibitor heavy chain H5 isoform 2 [Homo
           sapiens].
          Length = 728

 Score = 93.6 bits (231), Expect = 3e-19
 Identities = 50/101 (49%), Positives = 69/101 (68%), Gaps = 1/101 (0%)
 Frame = +3

Query: 693 HVLFRPTVGQQQSCPTCSTTLLNGDFKVTYDVNREK-LCDLLVANNYFAHFFAPQNLTKL 869
           +++F+PTV QQ      +   + GDF + YDVNRE+ + D+ V N YF H+FAP++L  L
Sbjct: 22  NIIFKPTVVQQARI---AQNGILGDFIIRYDVNREQSIGDIQVLNGYFVHYFAPKDLPPL 78

Query: 870 NKNVVFVIDISSSMEGQKVKQTKKALLKILSDLKPGDYFHL 992
            KNVVFV+D S+SM G K++QTK AL  IL DL+P D F +
Sbjct: 79  PKNVVFVLDSSASMVGTKLRQTKDALFTILHDLRPQDRFSI 119


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 38,498,098
Number of extensions: 1045224
Number of successful extensions: 4146
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 4114
Number of HSP's successfully gapped: 12
Length of query: 331
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 228
Effective length of database: 14,901,872
Effective search space: 3397626816
Effective search space used: 3397626816
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002998
         (994 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_032432.2| inter-alpha-trypsin inhibitor heavy chain H1 pr...   482   e-136
Alignment   gi|NP_032433.2| inter-alpha-trypsin inhibitor heavy chain H3 pr...   340   8e-94
Alignment   gi|NP_001152771.1| inter alpha-trypsin inhibitor, heavy chain 4...   268   4e-72
Alignment   gi|NP_061216.2| inter alpha-trypsin inhibitor, heavy chain 4 is...   268   4e-72
Alignment   gi|NP_034712.2| inter-alpha-trypsin inhibitor heavy chain H2 [M...   226   2e-59
Alignment   gi|XP_003085348.1| PREDICTED: LOW QUALITY PROTEIN: inter-alpha ...   178   7e-45
Alignment   gi|XP_003086909.1| PREDICTED: LOW QUALITY PROTEIN: inter-alpha ...   178   7e-45
Alignment   gi|NP_766059.1| inter-alpha-trypsin inhibitor heavy chain H5 pr...   165   6e-41

>ref|NP_032432.2| inter-alpha-trypsin inhibitor heavy chain H1 precursor [Mus
           musculus].
          Length = 907

 Score =  482 bits (1240), Expect = e-136
 Identities = 240/307 (78%), Positives = 272/307 (88%), Gaps = 7/307 (2%)
 Frame = +3

Query: 93  AMPTQGSPTDSTKGNK-------AVNGVVIRSLKVNCKVTSRFAHYVVTSQVVNNANKAK 251
           A P  G  T   +G++       +VNGV I+SLKVNCKVTSRFAHYV+TSQVVNNA+KA+
Sbjct: 21  ARPALGLATGRPRGSEKRHAVDTSVNGVSIKSLKVNCKVTSRFAHYVITSQVVNNADKAR 80

Query: 252 EVAFDVEIPKTAFISDFAITADENTFVGDIKDKVTAWKQYRKAAISGENSGLVRASGRTM 431
           EVAFDVEIPKTAFISDFAIT+D   F+GDIKDKVTAWKQYRKAA+ GE++GLVRASGR M
Sbjct: 81  EVAFDVEIPKTAFISDFAITSDGKAFIGDIKDKVTAWKQYRKAAVLGESAGLVRASGRNM 140

Query: 432 EQFAIHVTIGPRSKATFQLTYEEVLRRKLTQYDIVIKVKPKQLVQHFEIDVDIFEPQGIS 611
           EQF IH+T+G +SKATF+LTYEEVL+R+L QYDI IKV+PKQLVQHFEIDVDIFEPQGIS
Sbjct: 141 EQFTIHITVGAQSKATFRLTYEEVLKRRLMQYDITIKVRPKQLVQHFEIDVDIFEPQGIS 200

Query: 612 KLDAQASFLSKEAAAQLIKKSFSGKKGHVLFRPTVGQQQSCPTCSTTLLNGDFKVTYDVN 791
           KLDAQASFLS+E AAQ IKKSFSGKKGHVLFRPTV QQQSCPTCST+LLNG+FKVTYDVN
Sbjct: 201 KLDAQASFLSEELAAQTIKKSFSGKKGHVLFRPTVSQQQSCPTCSTSLLNGEFKVTYDVN 260

Query: 792 REKLCDLLVANNYFAHFFAPQNLTKLNKNVVFVIDISSSMEGQKVKQTKKALLKILSDLK 971
           R+KLCDLLVANNYF HFFAP+NLT ++KN+VFVIDIS SMEGQKV+QTK+ALLKIL D++
Sbjct: 261 RDKLCDLLVANNYFTHFFAPKNLTNMSKNLVFVIDISGSMEGQKVRQTKEALLKILEDMR 320

Query: 972 PGDYFHL 992
           P D F L
Sbjct: 321 PVDNFDL 327


>ref|NP_032433.2| inter-alpha-trypsin inhibitor heavy chain H3 precursor [Mus
           musculus].
          Length = 889

 Score =  340 bits (873), Expect = 8e-94
 Identities = 160/282 (56%), Positives = 218/282 (77%)
 Frame = +3

Query: 144 VNGVVIRSLKVNCKVTSRFAHYVVTSQVVNNANKAKEVAFDVEIPKTAFISDFAITADEN 323
           V+G+ + S K++CKVTSRFAH VVT++ VN A+ AKEV+FDVE+PKTAFI++F +T D  
Sbjct: 40  VDGIEVYSTKISCKVTSRFAHNVVTTRAVNRADTAKEVSFDVELPKTAFITNFTLTIDGV 99

Query: 324 TFVGDIKDKVTAWKQYRKAAISGENSGLVRASGRTMEQFAIHVTIGPRSKATFQLTYEEV 503
           T+ G++K+K  A KQY KA   G+ +GLV+ASGR +E+F + V +   SK TF+LTYEE+
Sbjct: 100 TYPGNVKEKEVAQKQYEKAVSQGKTAGLVKASGRKLEKFTVSVNVAAGSKVTFELTYEEL 159

Query: 504 LRRKLTQYDIVIKVKPKQLVQHFEIDVDIFEPQGISKLDAQASFLSKEAAAQLIKKSFSG 683
           L+R   +Y++ +KV+PKQLV+HFEID  IFEPQGIS LDA+ASF++ +     + KSFSG
Sbjct: 160 LKRNKGKYEMYLKVQPKQLVRHFEIDAHIFEPQGISMLDAEASFITNDLLGSALTKSFSG 219

Query: 684 KKGHVLFRPTVGQQQSCPTCSTTLLNGDFKVTYDVNREKLCDLLVANNYFAHFFAPQNLT 863
           KKGHV F+P++ QQ+SCPTC+ +LLNGDF + YDVNRE   ++ + N YF HFFAPQ L 
Sbjct: 220 KKGHVSFKPSLDQQRSCPTCTDSLLNGDFTIVYDVNRESPGNVQIVNGYFVHFFAPQGLP 279

Query: 864 KLNKNVVFVIDISSSMEGQKVKQTKKALLKILSDLKPGDYFH 989
            + KN+VFVID+S SM G+K++QT++ALLKIL D+K  DY +
Sbjct: 280 VVPKNIVFVIDVSGSMSGRKIQQTREALLKILDDVKEDDYLN 321


>ref|NP_001152771.1| inter alpha-trypsin inhibitor, heavy chain 4 isoform 2 [Mus
           musculus].
          Length = 941

 Score =  268 bits (686), Expect = 4e-72
 Identities = 134/283 (47%), Positives = 200/283 (70%), Gaps = 1/283 (0%)
 Frame = +3

Query: 147 NGVVIRSLKVNCKVTSRFAHYVVTSQVVNNANKAKEVAFDVEIPKTAFISDFAITADENT 326
           NG+ I SL V+ +V+SRFAH VVTS+VVN A+  +E  F VE+P+ AFI++F++  D  T
Sbjct: 31  NGIDIYSLTVDSRVSSRFAHTVVTSRVVNRADAVQEATFQVELPRKAFITNFSMIIDGVT 90

Query: 327 FVGDIKDKVTAWKQYRKAAISGENSGLVRASGRTMEQFAIHVTIGPRSKATFQLTYEEVL 506
           + G +K+K  A KQY  A   GE++G+V+ +GR  E+F + V + P SK TF+L Y+E+L
Sbjct: 91  YPGVVKEKAEAQKQYSAAVGRGESAGIVKTTGRQTEKFEVSVNVAPGSKITFELIYQELL 150

Query: 507 RRKLTQYDIVIKVKPKQLVQHFEIDVDIFEPQGISKLDAQASFLSKEAAAQLIKKSFSGK 686
           +R+L  Y++++KV+P+QLV+H ++D+ IFEPQGIS L+ +++F++ E  A  +  S +  
Sbjct: 151 QRRLGMYELLLKVRPQQLVKHLQMDIYIFEPQGISILETESTFMTPE-LANALTTSQNKT 209

Query: 687 KGHVLFRPTVGQQQSCPTCSTTLLNGDFKVTYDVNR-EKLCDLLVANNYFAHFFAPQNLT 863
           K H+ F+PT+ QQQ   +   T+LNGDF V YDVNR +    + +   YF H FAP+NL 
Sbjct: 210 KAHIRFKPTLSQQQKSQSEQDTVLNGDFIVRYDVNRSDSGGSIQIEEGYFVHHFAPENLP 269

Query: 864 KLNKNVVFVIDISSSMEGQKVKQTKKALLKILSDLKPGDYFHL 992
            ++KNV+FVID S SM G+K++QT++AL+KIL DL P D F+L
Sbjct: 270 TMSKNVIFVIDKSGSMSGKKIQQTREALVKILKDLSPQDQFNL 312


>ref|NP_061216.2| inter alpha-trypsin inhibitor, heavy chain 4 isoform 1 [Mus
           musculus].
          Length = 942

 Score =  268 bits (686), Expect = 4e-72
 Identities = 134/283 (47%), Positives = 200/283 (70%), Gaps = 1/283 (0%)
 Frame = +3

Query: 147 NGVVIRSLKVNCKVTSRFAHYVVTSQVVNNANKAKEVAFDVEIPKTAFISDFAITADENT 326
           NG+ I SL V+ +V+SRFAH VVTS+VVN A+  +E  F VE+P+ AFI++F++  D  T
Sbjct: 31  NGIDIYSLTVDSRVSSRFAHTVVTSRVVNRADAVQEATFQVELPRKAFITNFSMIIDGVT 90

Query: 327 FVGDIKDKVTAWKQYRKAAISGENSGLVRASGRTMEQFAIHVTIGPRSKATFQLTYEEVL 506
           + G +K+K  A KQY  A   GE++G+V+ +GR  E+F + V + P SK TF+L Y+E+L
Sbjct: 91  YPGVVKEKAEAQKQYSAAVGRGESAGIVKTTGRQTEKFEVSVNVAPGSKITFELIYQELL 150

Query: 507 RRKLTQYDIVIKVKPKQLVQHFEIDVDIFEPQGISKLDAQASFLSKEAAAQLIKKSFSGK 686
           +R+L  Y++++KV+P+QLV+H ++D+ IFEPQGIS L+ +++F++ E  A  +  S +  
Sbjct: 151 QRRLGMYELLLKVRPQQLVKHLQMDIYIFEPQGISILETESTFMTPE-LANALTTSQNKT 209

Query: 687 KGHVLFRPTVGQQQSCPTCSTTLLNGDFKVTYDVNR-EKLCDLLVANNYFAHFFAPQNLT 863
           K H+ F+PT+ QQQ   +   T+LNGDF V YDVNR +    + +   YF H FAP+NL 
Sbjct: 210 KAHIRFKPTLSQQQKSQSEQDTVLNGDFIVRYDVNRSDSGGSIQIEEGYFVHHFAPENLP 269

Query: 864 KLNKNVVFVIDISSSMEGQKVKQTKKALLKILSDLKPGDYFHL 992
            ++KNV+FVID S SM G+K++QT++AL+KIL DL P D F+L
Sbjct: 270 TMSKNVIFVIDKSGSMSGKKIQQTREALVKILKDLSPQDQFNL 312


>ref|NP_034712.2| inter-alpha-trypsin inhibitor heavy chain H2 [Mus musculus].
          Length = 950

 Score =  226 bits (576), Expect = 2e-59
 Identities = 126/292 (43%), Positives = 174/292 (59%), Gaps = 1/292 (0%)
 Frame = +3

Query: 114 PTDSTKGNKAVNGVVIRSLKVNCKVTSRFAHYVVTSQVVNNANKAKEVAFDVEIPKTAFI 293
           P +S +    V+ V + S KV   +TSR A   + S++VNN+   + V FDV+IPK AFI
Sbjct: 61  PEESGEETDTVDPVTLYSYKVQSTITSRVATTTIQSKLVNNSPLPQSVVFDVQIPKGAFI 120

Query: 294 SDFAITADENTFVGDIKDKVTAWKQYRKAAISGENSGLVRASGRTMEQFAIHVTIGPRSK 473
           S+F +T +  TF   IK+K      Y +A   G+ +G VR+    ME F   V I P +K
Sbjct: 121 SNFTMTVNGMTFTSSIKEKTVGRALYSQARAKGKTAGWVRSRTLDMENFNTEVNIPPGAK 180

Query: 474 ATFQLTYEEVLRRKLTQYDIVIKVKPKQLVQHFEIDVDIFEPQGISKLDAQASFLSKEAA 653
             F+L Y+EV  RKL  Y+  I ++P +L +H E++V I EPQG+  L    +F      
Sbjct: 181 VQFELHYQEVKWRKLGSYEHKIHLQPGKLAKHLEVNVWIIEPQGMRFLHVPDTFEGHFQG 240

Query: 654 AQLIKKSFSGKKGHVLFRPTVGQQQSCPTCSTTLLNGDFKVTYDVNR-EKLCDLLVANNY 830
             +I K    +K HV F+PTV QQ+ CP C+ T +NG+  V YDVNR EK  +L V N Y
Sbjct: 241 VPVISK--GQQKAHVSFKPTVAQQRKCPNCTETAVNGELVVMYDVNREEKAGELEVFNGY 298

Query: 831 FAHFFAPQNLTKLNKNVVFVIDISSSMEGQKVKQTKKALLKILSDLKPGDYF 986
           F HFFAP+NL  + KN++FVID+S SM G K+KQT +A+  IL DL+  D F
Sbjct: 299 FVHFFAPENLDPIPKNILFVIDVSGSMWGIKMKQTVEAMKTILDDLRTDDQF 350


>ref|XP_003085348.1| PREDICTED: LOW QUALITY PROTEIN: inter-alpha (globulin) inhibitor
           H5-like, pseudogene [Mus musculus].
          Length = 1321

 Score =  178 bits (451), Expect = 7e-45
 Identities = 109/305 (35%), Positives = 172/305 (56%), Gaps = 10/305 (3%)
 Frame = +3

Query: 108 GSPTDSTKGNKAVNGVVIRSLKVNCKVTSRFAHYVVTSQVVNNANKAKEVAFDVEIPKTA 287
           GS + S+K       +++ S  +   V SR+A+ +VTS + N  ++A E  FD+ +P+ A
Sbjct: 27  GSASSSSK-------LLMMSYSIRSTVVSRYANTLVTSVLFNPHDEAHEAIFDLNLPRIA 79

Query: 288 FISDFAITADENTFVGDIKDKVTAWKQYRKAAISGENSGLVRASGRTMEQFAIHVTIGPR 467
           FIS+F +T D+  +V +IK+K  A K Y KA   G+ +  V    R  E F I   +   
Sbjct: 80  FISNFTMTIDDKIYVAEIKEKHQAKKMYEKAYQQGKTAAHVGIRDRESENFRISTMLAAG 139

Query: 468 SKATFQLTYEEVLRRKLTQYDIVIKVKPKQLVQHFEIDVDIFEPQGIS-----KLDAQAS 632
           +KATF L YEE+L+R   +Y +V+ ++P QLV+   +++ + E  GI+      L     
Sbjct: 140 TKATFALAYEELLQRHQGRYQLVVGLRPGQLVRKLNVEITVSERTGIAYVHIPPLRTSQV 199

Query: 633 FLSKEAAAQLIKKSFSGKKG----HVLFRPTVGQQQSCPTCSTTLLNGDFKVTYDVNREK 800
             + + +   +  S   ++G    H+ F PT+  Q +    S++ +  DF + YDV+ E 
Sbjct: 200 CTNNQTSEGDLPPSTRIQRGETCVHITFSPTLRDQSA---FSSSGIMADFTIHYDVSMED 256

Query: 801 LC-DLLVANNYFAHFFAPQNLTKLNKNVVFVIDISSSMEGQKVKQTKKALLKILSDLKPG 977
           +  D+ V   YF H+FAP+ L  L KNVVFVID+S SM G K++QTKKA+  ILSDL+  
Sbjct: 257 IIGDVQVYGGYFIHYFAPRGLQPLEKNVVFVIDVSGSMFGTKLQQTKKAMDTILSDLQAS 316

Query: 978 DYFHL 992
           D F++
Sbjct: 317 DSFNI 321


>ref|XP_003086909.1| PREDICTED: LOW QUALITY PROTEIN: inter-alpha (globulin) inhibitor
           H5-like, pseudogene [Mus musculus].
          Length = 1321

 Score =  178 bits (451), Expect = 7e-45
 Identities = 109/305 (35%), Positives = 172/305 (56%), Gaps = 10/305 (3%)
 Frame = +3

Query: 108 GSPTDSTKGNKAVNGVVIRSLKVNCKVTSRFAHYVVTSQVVNNANKAKEVAFDVEIPKTA 287
           GS + S+K       +++ S  +   V SR+A+ +VTS + N  ++A E  FD+ +P+ A
Sbjct: 27  GSASSSSK-------LLMMSYSIRSTVVSRYANTLVTSVLFNPHDEAHEAIFDLNLPRIA 79

Query: 288 FISDFAITADENTFVGDIKDKVTAWKQYRKAAISGENSGLVRASGRTMEQFAIHVTIGPR 467
           FIS+F +T D+  +V +IK+K  A K Y KA   G+ +  V    R  E F I   +   
Sbjct: 80  FISNFTMTIDDKIYVAEIKEKHQAKKMYEKAYQQGKTAAHVGIRDRESENFRISTMLAAG 139

Query: 468 SKATFQLTYEEVLRRKLTQYDIVIKVKPKQLVQHFEIDVDIFEPQGIS-----KLDAQAS 632
           +KATF L YEE+L+R   +Y +V+ ++P QLV+   +++ + E  GI+      L     
Sbjct: 140 TKATFALAYEELLQRHQGRYQLVVGLRPGQLVRKLNVEITVSERTGIAYVHIPPLRTSQV 199

Query: 633 FLSKEAAAQLIKKSFSGKKG----HVLFRPTVGQQQSCPTCSTTLLNGDFKVTYDVNREK 800
             + + +   +  S   ++G    H+ F PT+  Q +    S++ +  DF + YDV+ E 
Sbjct: 200 CTNNQTSEGDLPPSTRIQRGETCVHITFSPTLRDQSA---FSSSGIMADFTIHYDVSMED 256

Query: 801 LC-DLLVANNYFAHFFAPQNLTKLNKNVVFVIDISSSMEGQKVKQTKKALLKILSDLKPG 977
           +  D+ V   YF H+FAP+ L  L KNVVFVID+S SM G K++QTKKA+  ILSDL+  
Sbjct: 257 IIGDVQVYGGYFIHYFAPRGLQPLEKNVVFVIDVSGSMFGTKLQQTKKAMDTILSDLQAS 316

Query: 978 DYFHL 992
           D F++
Sbjct: 317 DSFNI 321


>ref|NP_766059.1| inter-alpha-trypsin inhibitor heavy chain H5 precursor [Mus
           musculus].
          Length = 952

 Score =  165 bits (417), Expect = 6e-41
 Identities = 106/298 (35%), Positives = 174/298 (58%), Gaps = 19/298 (6%)
 Frame = +3

Query: 156 VIRSLKVNCKVTSRFAHYVVTSQVVNNANKAKEVAFDVEIPKTAFISDFAITADENTFVG 335
           ++    V   + SR+A   V+ +++N A++ +E  F ++IP++AFI++F +   ++ + G
Sbjct: 50  LMAEFSVKSTIISRYAFTTVSCRMLNRASEDQEAEFQMQIPESAFITNFTMLIGDSVYRG 109

Query: 336 DI--KDKVTAW----KQYRKAAISGENSGLVRASGRTMEQFAIHVTIGPRSKATFQLTYE 497
           +I  KDK ++     K+ R +  + EN           + F   + I  + KA F L+YE
Sbjct: 110 EITQKDKKSSESVKDKRNRTSDDNEENGS---------DMFKASLVIPSKDKAAFFLSYE 160

Query: 498 EVLRRKLTQYDIVIKVKPKQLVQHFEIDVDIFEPQGISKLDAQASFLSKEAAA------- 656
           E+L+R+L +Y+  I V+P+QLV    ++VDI E  GI+ L+      S++  +       
Sbjct: 161 ELLQRRLGKYEHSISVRPQQLVGRLTVEVDILERSGITSLEVLPLHNSRKKGSGKAEGDV 220

Query: 657 -----QLIKKSFSGKKGHVLFRPTVGQQQSCPTCSTTLLNGDFKVTYDVNREK-LCDLLV 818
                 LI ++ +  K  V+F+PTV QQ      +   + GDF V YDV RE+ + D+ V
Sbjct: 221 GPPPSTLINQNETFAK--VIFKPTVVQQAKI---AQNGILGDFIVRYDVEREQNIGDIQV 275

Query: 819 ANNYFAHFFAPQNLTKLNKNVVFVIDISSSMEGQKVKQTKKALLKILSDLKPGDYFHL 992
            N YF H+FAP+NL  L KNVVFV+DIS+SM G K++QT++AL+ IL+DL+P D F++
Sbjct: 276 LNGYFVHYFAPKNLPPLPKNVVFVLDISASMVGAKLQQTREALVTILNDLRPQDRFNI 333


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 32,699,845
Number of extensions: 883184
Number of successful extensions: 3506
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 3484
Number of HSP's successfully gapped: 8
Length of query: 331
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 229
Effective length of database: 12,553,887
Effective search space: 2874840123
Effective search space used: 2874840123
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002998
         (994 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_999089.1| inter-alpha-trypsin inhibitor heavy chain H1 pr...   582   e-167
Alignment   gi|NP_001193278.1| inter-alpha-trypsin inhibitor heavy chain H3...   337   8e-93
Alignment   gi|NP_001001537.1| inter-alpha-trypsin inhibitor heavy chain H4...   261   6e-70
Alignment   gi|NP_999068.1| inter-alpha-trypsin inhibitor heavy chain H2 pr...   228   5e-60
Alignment   gi|XP_003130868.1| PREDICTED: inter-alpha-trypsin inhibitor hea...   166   2e-41

>ref|NP_999089.1| inter-alpha-trypsin inhibitor heavy chain H1 precursor [Sus
           scrofa].
          Length = 902

 Score =  582 bits (1501), Expect = e-167
 Identities = 299/322 (92%), Positives = 300/322 (93%)
 Frame = +3

Query: 27  MDGTMXXXXXXXXXXXXXXXXXAMPTQGSPTDSTKGNKAVNGVVIRSLKVNCKVTSRFAH 206
           MDGTM                 AMPTQGSPTDSTKGNKAVNGVVIRSLKVNCKVTSRFAH
Sbjct: 1   MDGTMGLQGLLCLCLASHLALQAMPTQGSPTDSTKGNKAVNGVVIRSLKVNCKVTSRFAH 60

Query: 207 YVVTSQVVNNANKAKEVAFDVEIPKTAFISDFAITADENTFVGDIKDKVTAWKQYRKAAI 386
           YVVTSQVVNN NK KEVAFDVEIPKTAFISDFAITADENTFVGDIKDKVTAWKQYRKAAI
Sbjct: 61  YVVTSQVVNNTNKPKEVAFDVEIPKTAFISDFAITADENTFVGDIKDKVTAWKQYRKAAI 120

Query: 387 SGENSGLVRASGRTMEQFAIHVTIGPRSKATFQLTYEEVLRRKLTQYDIVIKVKPKQLVQ 566
           SGENSGLVRASGRTMEQF IHVTIGPRSKATFQLTYEEVLRRKLTQYDIVIKVKPKQLVQ
Sbjct: 121 SGENSGLVRASGRTMEQFTIHVTIGPRSKATFQLTYEEVLRRKLTQYDIVIKVKPKQLVQ 180

Query: 567 HFEIDVDIFEPQGISKLDAQASFLSKEAAAQLIKKSFSGKKGHVLFRPTVGQQQSCPTCS 746
           HFEIDVDIFEPQGISKLDAQASFLSKEAAAQLIKKSFSGKKGHVLFRPTVGQQQSC TCS
Sbjct: 181 HFEIDVDIFEPQGISKLDAQASFLSKEAAAQLIKKSFSGKKGHVLFRPTVGQQQSCSTCS 240

Query: 747 TTLLNGDFKVTYDVNREKLCDLLVANNYFAHFFAPQNLTKLNKNVVFVIDISSSMEGQKV 926
           TTLLNGDFKVTYDVNREKLCDLLVANNYFAHFFAPQNLTKLNKNVVFVIDISSSMEGQKV
Sbjct: 241 TTLLNGDFKVTYDVNREKLCDLLVANNYFAHFFAPQNLTKLNKNVVFVIDISSSMEGQKV 300

Query: 927 KQTKKALLKILSDLKPGDYFHL 992
           KQTK+ALLKILSDLKPGDYF L
Sbjct: 301 KQTKEALLKILSDLKPGDYFDL 322


>ref|NP_001193278.1| inter-alpha-trypsin inhibitor heavy chain H3 [Sus scrofa].
          Length = 889

 Score =  337 bits (863), Expect = 8e-93
 Identities = 161/282 (57%), Positives = 217/282 (76%)
 Frame = +3

Query: 144 VNGVVIRSLKVNCKVTSRFAHYVVTSQVVNNANKAKEVAFDVEIPKTAFISDFAITADEN 323
           VNG+ + S KV+CKV+SRFAH VVT++ VN+A+ AKEV+FDVE+PKTAFI++F +T D  
Sbjct: 40  VNGIEVYSTKVSCKVSSRFAHNVVTTRAVNHADTAKEVSFDVELPKTAFITNFTLTIDGV 99

Query: 324 TFVGDIKDKVTAWKQYRKAAISGENSGLVRASGRTMEQFAIHVTIGPRSKATFQLTYEEV 503
           T+ G++K+K  A KQY KA    + +GLV+ASGR +E+F + V +   SK TF+LTYEE+
Sbjct: 100 TYPGNVKEKEVAKKQYEKAVSQDKTAGLVKASGRKLEKFTVSVNVAAGSKVTFELTYEEL 159

Query: 504 LRRKLTQYDIVIKVKPKQLVQHFEIDVDIFEPQGISKLDAQASFLSKEAAAQLIKKSFSG 683
           L+R   +Y++ +KV+PKQLV+HFEI  DIFEPQGIS LDA+ASF++ +     + KSFSG
Sbjct: 160 LKRHKGKYEMYLKVQPKQLVKHFEITADIFEPQGISTLDAEASFITNDLLGSALTKSFSG 219

Query: 684 KKGHVLFRPTVGQQQSCPTCSTTLLNGDFKVTYDVNREKLCDLLVANNYFAHFFAPQNLT 863
           KKGHV F+P++ QQ+SCPTC+ +LL GDF +TYDVNRE   ++ + N YF HFFAPQ L 
Sbjct: 220 KKGHVSFKPSLDQQRSCPTCTDSLLKGDFIITYDVNRESPANVQIVNGYFVHFFAPQGLP 279

Query: 864 KLNKNVVFVIDISSSMEGQKVKQTKKALLKILSDLKPGDYFH 989
            + KNVVFVID+S SM G+K++QT+ ALLKIL D+K  DY +
Sbjct: 280 VVPKNVVFVIDVSGSMYGRKMEQTRDALLKILDDIKEDDYLN 321


>ref|NP_001001537.1| inter-alpha-trypsin inhibitor heavy chain H4 [Sus scrofa].
          Length = 921

 Score =  261 bits (666), Expect = 6e-70
 Identities = 136/291 (46%), Positives = 202/291 (69%), Gaps = 1/291 (0%)
 Frame = +3

Query: 123 STKGNKAVNGVVIRSLKVNCKVTSRFAHYVVTSQVVNNANKAKEVAFDVEIPKTAFISDF 302
           ST  +K  N + I SL V+ KV+SRFAH VVTS+VVN  +  +E  F +E+PK AFI++F
Sbjct: 24  STTAHK--NDINIYSLTVDSKVSSRFAHTVVTSRVVNKGSAVQEATFQMELPKKAFITNF 81

Query: 303 AITADENTFVGDIKDKVTAWKQYRKAAISGENSGLVRASGRTMEQFAIHVTIGPRSKATF 482
           ++  D  T+ G+IK+K  A +QY  A   GE++GLVRA+GR  EQF + V++ P +K TF
Sbjct: 82  SMIIDGVTYPGNIKEKAAAQEQY-SAVARGESAGLVRATGRKTEQFQVAVSVAPAAKVTF 140

Query: 483 QLTYEEVLRRKLTQYDIVIKVKPKQLVQHFEIDVDIFEPQGISKLDAQASFLSKEAAAQL 662
           +L YEE+L R L  Y++++K++P+QLV+H ++D+ IFEPQGIS L+ +++F++ E  A+ 
Sbjct: 141 ELVYEELLARHLGVYELLLKIQPQQLVKHLQMDIHIFEPQGISFLETESTFMTNE-LAEA 199

Query: 663 IKKSFSGKKGHVLFRPTVGQQQSCPTCSTTLLNGDFKVTYDVNREKL-CDLLVANNYFAH 839
           +  S +  K H+ F+PT+ QQQ  P    T+L+G+F V YDVNR      + + N YF H
Sbjct: 200 LTISQNKTKAHIRFKPTLSQQQKSPEQQETVLDGNFIVRYDVNRTVTGGSIQIENGYFVH 259

Query: 840 FFAPQNLTKLNKNVVFVIDISSSMEGQKVKQTKKALLKILSDLKPGDYFHL 992
           +FAP+  + + KNV+FVID S SM G+K++QT++AL+KIL DL   D F+L
Sbjct: 260 YFAPEVWSAIPKNVIFVIDTSGSMRGRKIQQTREALIKILGDLGSRDQFNL 310


>ref|NP_999068.1| inter-alpha-trypsin inhibitor heavy chain H2 precursor [Sus
           scrofa].
          Length = 935

 Score =  228 bits (580), Expect = 5e-60
 Identities = 121/289 (41%), Positives = 178/289 (61%), Gaps = 1/289 (0%)
 Frame = +3

Query: 129 KGNKAVNGVVIRSLKVNCKVTSRFAHYVVTSQVVNNANKAKEVAFDVEIPKTAFISDFAI 308
           +  + V+ V + S KV   +TSR A+ V+ ++VVN++ + ++V FD++IPK AFIS+F++
Sbjct: 51  RSQEGVDQVTLYSYKVQSTITSRMANTVIQTKVVNHSPEPQDVVFDIQIPKGAFISNFSM 110

Query: 309 TADENTFVGDIKDKVTAWKQYRKAAISGENSGLVRASGRTMEQFAIHVTIGPRSKATFQL 488
           T D   F   IK+K      Y +A   G+ +GLVR+    ME F   V I P +K  F+L
Sbjct: 111 TVDGTKFTSSIKEKTVGRALYWQARAKGKTAGLVRSRALDMENFKTEVNIAPGAKVQFEL 170

Query: 489 TYEEVLRRKLTQYDIVIKVKPKQLVQHFEIDVDIFEPQGISKLDAQASFLSKEAAAQLIK 668
            Y+EV  R L  Y+  I ++P +L +H E+DV I EPQG+  L    +F        ++ 
Sbjct: 171 HYQEVKWRNLGSYEHRIHLQPGRLAKHLEVDVQIIEPQGLRFLHVLDTFDGHFDGVPVVV 230

Query: 669 KSFSGKKGHVLFRPTVGQQQSCPTCSTTLLNGDFKVTYDVNRE-KLCDLLVANNYFAHFF 845
           K    +K HV F+PTV QQ+ CP+CS T ++G+  V YDVNRE K  +L + N YF HFF
Sbjct: 231 K--GQQKAHVAFKPTVAQQRKCPSCSETAVDGELVVMYDVNREQKAGELQLFNGYFVHFF 288

Query: 846 APQNLTKLNKNVVFVIDISSSMEGQKVKQTKKALLKILSDLKPGDYFHL 992
           AP+++  + KN++FVID+S SM G K+KQT +A+  IL DL+  D F L
Sbjct: 289 APESMDPIPKNILFVIDVSGSMWGIKMKQTVEAMKTILDDLRAEDQFSL 337


>ref|XP_003130868.1| PREDICTED: inter-alpha-trypsin inhibitor heavy chain H5-like [Sus
           scrofa].
          Length = 944

 Score =  166 bits (419), Expect = 2e-41
 Identities = 104/298 (34%), Positives = 168/298 (56%), Gaps = 19/298 (6%)
 Frame = +3

Query: 156 VIRSLKVNCKVTSRFAHYVVTSQVVNNANKAKEVAFDVEIPKTAFISDFAITADENTFVG 335
           ++    V   + SR+A   V+ +++N A+K +EV F ++IP  AFI++F +      + G
Sbjct: 50  LMTEFSVKSTIISRYAFTTVSCRMLNRASKDQEVTFQMQIPAAAFITNFTMLIGNQVYQG 109

Query: 336 DI--KDKVTAWKQYRKAAISGENSGLVRASGRTMEQFAIHVTIGPRSKATFQLTYEEVLR 509
           +I  +D+    +   K   + E++G      +  E F   V +  + KA F L+YEE+L+
Sbjct: 110 EITERDEKPGGQVKEKRNKTAEDNG-----EKGTEMFRASVVLPSKDKAAFFLSYEELLQ 164

Query: 510 RKLTQYDIVIKVKPKQLVQHFEIDVDIFEPQGISKLDAQASFLSKEAAAQLIKKSFSGKK 689
           R+L +Y+ V+ V+P+QLV    ++V++ E  GI++L+      S+       K S SG+ 
Sbjct: 165 RRLGKYEHVVSVRPQQLVGRLTVEVNVLERSGIAELEVLRLQNSRR------KGSGSGED 218

Query: 690 ----------------GHVLFRPTVGQQQSCPTCSTTLLNGDFKVTYDVNREK-LCDLLV 818
                            HV+F+P+V QQ      +   + GDF V YDV+RE+ + D+ V
Sbjct: 219 DSGPPPSTVIHHNETFAHVVFKPSVVQQAKI---AQNGILGDFIVRYDVSREQSIGDIQV 275

Query: 819 ANNYFAHFFAPQNLTKLNKNVVFVIDISSSMEGQKVKQTKKALLKILSDLKPGDYFHL 992
            N YF H+FAP++L  L KNVVFV+D S+SM G K++QTK AL  IL DL+P D+F++
Sbjct: 276 LNGYFVHYFAPRDLPPLPKNVVFVLDSSASMVGAKLRQTKDALFTILHDLRPQDHFNI 333


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 24,183,904
Number of extensions: 660358
Number of successful extensions: 2717
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 2695
Number of HSP's successfully gapped: 5
Length of query: 331
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 232
Effective length of database: 8,879,129
Effective search space: 2059957928
Effective search space used: 2059957928
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002998
         (994 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr13                                                         319   2e-84

>Sscrofa_Chr13 
||          Length = 218635234

 Score =  319 bits (161), Expect = 2e-84
 Identities = 167/169 (98%)
 Strand = Plus / Plus

                                                                            
Query: 139      aggccgtcaatggtgtggtcattcggagtttgaaagtcaactgcaaggtcacctctcgct 198
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38089095 aggccgtcaatggtgtggtcattcggagtttgaaagtcaactgcaaggtcacctctcgct 38089154

                                                                            
Query: 199      tcgcccactacgttgtcaccagccaagtggtcaacaatgccaacaaagccaaggaagtgg 258
                ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 38089155 tcgcccactacgtcgtcaccagccaagtggtcaacaacgccaacaaagccaaggaagtgg 38089214

                                                                 
Query: 259      ccttcgatgtggaaatccccaagacagccttcatcagcgactttgccat 307
                |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38089215 ccttcgatgtggaaatccccaagacagccttcatcagcgactttgccat 38089263



 Score =  280 bits (141), Expect = 1e-72
 Identities = 141/141 (100%)
 Strand = Plus / Plus

                                                                            
Query: 1        gataaggcagcaagaggcttgagtccatggacggcaccatggggctgcaggggctgctct 60
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38088433 gataaggcagcaagaggcttgagtccatggacggcaccatggggctgcaggggctgctct 38088492

                                                                            
Query: 61       gcctgtgcctggcgtcccacctcgccctgcaggccatgcccactcaaggttcacccacag 120
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38088493 gcctgtgcctggcgtcccacctcgccctgcaggccatgcccactcaaggttcacccacag 38088552

                                     
Query: 121      acagtaccaaaggcaacaagg 141
                |||||||||||||||||||||
Sbjct: 38088553 acagtaccaaaggcaacaagg 38088573



 Score =  250 bits (126), Expect = 1e-63
 Identities = 129/130 (99%)
 Strand = Plus / Plus

                                                                            
Query: 688      agggtcatgtgcttttccgccccacggtgggccagcaacaatcctgccccacatgctcta 747
                ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 38091884 agggtcatgtgcttttccgccccacggtgggccagcaacaatcctgctccacatgctcta 38091943

                                                                            
Query: 748      cgactctgctgaacggggacttcaaggtgacctacgatgtcaatcgggagaagctctgtg 807
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38091944 cgactctgctgaacggggacttcaaggtgacctacgatgtcaatcgggagaagctctgtg 38092003

                          
Query: 808      acctcctggt 817
                ||||||||||
Sbjct: 38092004 acctcctggt 38092013



 Score =  234 bits (118), Expect = 7e-59
 Identities = 118/118 (100%)
 Strand = Plus / Plus

                                                                            
Query: 815      ggtcgccaacaactactttgcccacttctttgccccccaaaacctgacaaaactgaataa 874
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38092095 ggtcgccaacaactactttgcccacttctttgccccccaaaacctgacaaaactgaataa 38092154

                                                                          
Query: 875      gaacgtggtttttgtgattgacattagttcctccatggaaggccagaaagtgaagcag 932
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38092155 gaacgtggtttttgtgattgacattagttcctccatggaaggccagaaagtgaagcag 38092212



 Score =  210 bits (106), Expect = 1e-51
 Identities = 106/106 (100%)
 Strand = Plus / Plus

                                                                            
Query: 308      cacagcagatgaaaacacatttgtgggggacataaaggacaaagtgactgcatggaagca 367
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38089651 cacagcagatgaaaacacatttgtgggggacataaaggacaaagtgactgcatggaagca 38089710

                                                              
Query: 368      gtaccggaaagcagccatttcaggagagaattctggcctcgtcagg 413
                ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38089711 gtaccggaaagcagccatttcaggagagaattctggcctcgtcagg 38089756



 Score =  105 bits (53), Expect = 5e-20
 Identities = 62/65 (95%)
 Strand = Plus / Plus

                                                                            
Query: 930      cagaccaaaaaggcgcttttaaaaatcttgagtgatttgaagccaggggactacttccac 989
                ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct: 38092593 cagaccaaagaggcgcttttaaaaatcctgagtgatttgaagccaggggactacttcgac 38092652

                     
Query: 990      ctggt 994
                |||||
Sbjct: 38092653 ctggt 38092657



 Score = 67.9 bits (34), Expect = 1e-08
 Identities = 34/34 (100%)
 Strand = Plus / Plus

                                                  
Query: 657      caactcatcaagaagtccttctcagggaaaaagg 690
                ||||||||||||||||||||||||||||||||||
Sbjct: 38089992 caactcatcaagaagtccttctcagggaaaaagg 38090025


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 28,830,649
Number of extensions: 191
Number of successful extensions: 191
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 191
Number of HSP's successfully gapped: 7
Length of query: 994
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 973
Effective length of database: 2,808,413,156
Effective search space: 2732586000788
Effective search space used: 2732586000788
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)