Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002998
(994 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001068821.1| inter-alpha-trypsin inhibitor heavy chain H1... 511 e-145
Alignment gi|NP_001095368.1| inter-alpha-trypsin inhibitor heavy chain H3... 345 3e-95
Alignment gi|NP_001015590.2| inter-alpha-trypsin inhibitor heavy chain H4... 273 1e-73
Alignment gi|NP_001091485.1| inter-alpha-trypsin inhibitor heavy chain H2... 234 9e-62
Alignment gi|NP_001095986.1| inter-alpha-trypsin inhibitor heavy chain H5... 156 2e-38
>ref|NP_001068821.1| inter-alpha-trypsin inhibitor heavy chain H1 precursor [Bos
taurus].
Length = 906
Score = 511 bits (1316), Expect = e-145
Identities = 257/307 (83%), Positives = 279/307 (90%), Gaps = 7/307 (2%)
Frame = +3
Query: 93 AMPTQGSPTDSTKGNK-------AVNGVVIRSLKVNCKVTSRFAHYVVTSQVVNNANKAK 251
A+ QGSPT + KG K AV+GVVIRSLKVNCKVTSRFAHY++TSQVVN+A+ AK
Sbjct: 19 AVAAQGSPTRNPKGGKKRMAVDAAVDGVVIRSLKVNCKVTSRFAHYIITSQVVNSADTAK 78
Query: 252 EVAFDVEIPKTAFISDFAITADENTFVGDIKDKVTAWKQYRKAAISGENSGLVRASGRTM 431
EV+F+VEIPKTAFISDFAITADEN F GDIKDKVTAWKQYRKAAISGEN+GLVRASGRTM
Sbjct: 79 EVSFNVEIPKTAFISDFAITADENAFTGDIKDKVTAWKQYRKAAISGENAGLVRASGRTM 138
Query: 432 EQFAIHVTIGPRSKATFQLTYEEVLRRKLTQYDIVIKVKPKQLVQHFEIDVDIFEPQGIS 611
EQF+IH+ +GPRSKATF+LTYEEVLRRKL QYDIVIKVKP+QLVQHFEIDVDIFEPQGI
Sbjct: 139 EQFSIHIIVGPRSKATFRLTYEEVLRRKLMQYDIVIKVKPQQLVQHFEIDVDIFEPQGIR 198
Query: 612 KLDAQASFLSKEAAAQLIKKSFSGKKGHVLFRPTVGQQQSCPTCSTTLLNGDFKVTYDVN 791
KLD +ASFL KE AAQLIKKSFSGKKGHVLFRPTV QQQ+CPTCSTTLLNGDFKVTYDVN
Sbjct: 199 KLDVEASFLPKELAAQLIKKSFSGKKGHVLFRPTVSQQQTCPTCSTTLLNGDFKVTYDVN 258
Query: 792 REKLCDLLVANNYFAHFFAPQNLTKLNKNVVFVIDISSSMEGQKVKQTKKALLKILSDLK 971
R+ CDLLVANNYFAHFFAPQNL KLNKNVVFVIDISSSMEGQK+KQTK+AL KIL D++
Sbjct: 259 RDDACDLLVANNYFAHFFAPQNLKKLNKNVVFVIDISSSMEGQKLKQTKEALHKILGDMR 318
Query: 972 PGDYFHL 992
PGDYF L
Sbjct: 319 PGDYFDL 325
>ref|NP_001095368.1| inter-alpha-trypsin inhibitor heavy chain H3 precursor [Bos
taurus].
Length = 891
Score = 345 bits (886), Expect = 3e-95
Identities = 166/284 (58%), Positives = 220/284 (77%)
Frame = +3
Query: 138 KAVNGVVIRSLKVNCKVTSRFAHYVVTSQVVNNANKAKEVAFDVEIPKTAFISDFAITAD 317
+AV+G+ + S KVNCKVTSRFAH VVT++ VN+AN AKEV+FDVE+PKTAFI++F +T D
Sbjct: 38 RAVDGIEVYSTKVNCKVTSRFAHNVVTTRAVNHANTAKEVSFDVELPKTAFITNFTLTID 97
Query: 318 ENTFVGDIKDKVTAWKQYRKAAISGENSGLVRASGRTMEQFAIHVTIGPRSKATFQLTYE 497
T+ G +K+K A KQY KA G+ +GLV+ASGR +E+F + V + SK TF+LTYE
Sbjct: 98 GVTYPGKVKEKEVAKKQYEKAVSQGKTAGLVKASGRKLEKFTVSVNVAAGSKVTFELTYE 157
Query: 498 EVLRRKLTQYDIVIKVKPKQLVQHFEIDVDIFEPQGISKLDAQASFLSKEAAAQLIKKSF 677
E+L+R +Y++ +KV+PKQLV+HFEI VDIFEPQGIS LDA+ASF++ + + KSF
Sbjct: 158 ELLKRHKGKYEMYLKVQPKQLVKHFEITVDIFEPQGISTLDAEASFITNDLLGSALTKSF 217
Query: 678 SGKKGHVLFRPTVGQQQSCPTCSTTLLNGDFKVTYDVNREKLCDLLVANNYFAHFFAPQN 857
SGKKGHV F+P++ QQ+SCPTC+ +LL GDF +TYDVNRE ++ + N YF HFFAPQ
Sbjct: 218 SGKKGHVSFKPSLDQQRSCPTCTDSLLKGDFIITYDVNRESPANVQIVNGYFVHFFAPQG 277
Query: 858 LTKLNKNVVFVIDISSSMEGQKVKQTKKALLKILSDLKPGDYFH 989
L + K+VVFVID+S SM G+K++QTK ALLKIL D+K DY +
Sbjct: 278 LPVVPKSVVFVIDVSGSMHGRKMEQTKDALLKILEDVKQDDYLN 321
>ref|NP_001015590.2| inter-alpha-trypsin inhibitor heavy chain H4 precursor [Bos
taurus].
Length = 916
Score = 273 bits (699), Expect = 1e-73
Identities = 137/291 (47%), Positives = 203/291 (69%), Gaps = 1/291 (0%)
Frame = +3
Query: 123 STKGNKAVNGVVIRSLKVNCKVTSRFAHYVVTSQVVNNANKAKEVAFDVEIPKTAFISDF 302
++K K N + I SL V+ KV+SRFAH V+TS+VVN A+ +E F +E+PK AFI++F
Sbjct: 24 TSKAQKVQNDIDIYSLTVDSKVSSRFAHTVITSRVVNKADAVREATFQMELPKKAFITNF 83
Query: 303 AITADENTFVGDIKDKVTAWKQYRKAAISGENSGLVRASGRTMEQFAIHVTIGPRSKATF 482
++ D T+ G+IK+K A +QY A GE++GLVRA+GR EQF + V++ P +K TF
Sbjct: 84 SMVIDGVTYPGNIKEKAAAQEQYSAAVARGESAGLVRATGRKTEQFQVSVSVAPAAKVTF 143
Query: 483 QLTYEEVLRRKLTQYDIVIKVKPKQLVQHFEIDVDIFEPQGISKLDAQASFLSKEAAAQL 662
+L YEE+L R L Y++++KV+P+QLV+H ++D+ IFEPQGIS L+ +++F++ + A+
Sbjct: 144 ELVYEELLARHLGAYELLLKVRPQQLVKHLQMDIHIFEPQGISFLETESTFMTNK-LAEA 202
Query: 663 IKKSFSGKKGHVLFRPTVGQQQSCPTCSTTLLNGDFKVTYDVNRE-KLCDLLVANNYFAH 839
+ S + K HV F+PT+ QQQ P T+++G F V YDV+R + + N YF H
Sbjct: 203 LTTSQNKTKAHVRFKPTLSQQQKYPEKQDTVIDGSFIVRYDVDRPLSGGSIQIENGYFVH 262
Query: 840 FFAPQNLTKLNKNVVFVIDISSSMEGQKVKQTKKALLKILSDLKPGDYFHL 992
+FAP +L+ + KNV+FVID S SM G+K+KQT++AL+KIL DL P D F L
Sbjct: 263 YFAPDSLSTIPKNVIFVIDKSGSMMGRKIKQTREALIKILDDLSPHDQFDL 313
>ref|NP_001091485.1| inter-alpha-trypsin inhibitor heavy chain H2 [Bos taurus].
Length = 946
Score = 234 bits (597), Expect = 9e-62
Identities = 124/290 (42%), Positives = 182/290 (62%), Gaps = 1/290 (0%)
Frame = +3
Query: 120 DSTKGNKAVNGVVIRSLKVNCKVTSRFAHYVVTSQVVNNANKAKEVAFDVEIPKTAFISD 299
+S + + V+ V + S KV +TSR A+ V+ ++VVN++ + + V FDV+IPK AFIS+
Sbjct: 59 ESGERTEDVDQVTVYSYKVQSTITSRVANTVIQTKVVNHSPQPQNVVFDVQIPKGAFISN 118
Query: 300 FAITADENTFVGDIKDKVTAWKQYRKAAISGENSGLVRASGRTMEQFAIHVTIGPRSKAT 479
F++T D TF IK+K Y +A G+ +GLVR+ ME F V+I P +K
Sbjct: 119 FSMTVDGTTFTSSIKEKTVGRALYAQARAKGKTAGLVRSRALDMEDFKTEVSIAPGAKVQ 178
Query: 480 FQLTYEEVLRRKLTQYDIVIKVKPKQLVQHFEIDVDIFEPQGISKLDAQASFLSKEAAAQ 659
F+L Y+EV RKL Y+ + +KP +L +H E+DV I EPQG+ L +F
Sbjct: 179 FELHYQEVKWRKLGSYEHRLHLKPGRLAKHLEVDVRIIEPQGLRSLHVLDTFDGHFDGVP 238
Query: 660 LIKKSFSGKKGHVLFRPTVGQQQSCPTCSTTLLNGDFKVTYDVNR-EKLCDLLVANNYFA 836
++ K +K H+ F+PTV QQ+ C CS T+++G+ V YDVNR EK+ +L V N YF
Sbjct: 239 VVSK--GPQKAHIAFKPTVAQQRKCLNCSETMVDGELVVMYDVNREEKVGELEVFNGYFV 296
Query: 837 HFFAPQNLTKLNKNVVFVIDISSSMEGQKVKQTKKALLKILSDLKPGDYF 986
HFFAP+N+ + KN++FVID+S SM G K+KQT +A+ IL DL+ D+F
Sbjct: 297 HFFAPENMDPIPKNILFVIDVSGSMWGIKMKQTVEAMKTILDDLRTEDHF 346
>ref|NP_001095986.1| inter-alpha-trypsin inhibitor heavy chain H5 precursor [Bos
taurus].
Length = 940
Score = 156 bits (395), Expect = 2e-38
Identities = 99/294 (33%), Positives = 166/294 (56%), Gaps = 15/294 (5%)
Frame = +3
Query: 156 VIRSLKVNCKVTSRFAHYVVTSQVVNNANKAKEVAFDVEIPKTAFISDFAITADENTFVG 335
++ V + SR+A V +++N ++ +EV F ++IP AFI++F + + G
Sbjct: 50 LMTEFSVKSTIISRYAFTTVACRMLNRGSEDQEVTFQMQIPAAAFITNFTALIGDKVYQG 109
Query: 336 DI--KDKVTAWKQYRKAAISGENSGLVRASGRTMEQFAIHVTIGPRSKATFQLTYEEVLR 509
+I ++K K K + E++G + E F + + KA F L+YEE+L+
Sbjct: 110 EITEREKRNGDKVKEKRNKTIEDNG-----EKGTETFRASAVLPSKDKAAFLLSYEELLQ 164
Query: 510 RKLTQYDIVIKVKPKQLVQHFEIDVDIFEPQGISKLDAQASFLSKEAAA----------- 656
R+L +Y+ V+ V+P+QLV ++V + E GI++L+ S++ +
Sbjct: 165 RRLGKYEHVVSVRPQQLVGRLTVEVTVLERPGIAELEVLGLQNSRQRGSGRGPDDSGPPP 224
Query: 657 -QLIKKSFSGKKGHVLFRPTVGQQQSCPTCSTTLLNGDFKVTYDVNREK-LCDLLVANNY 830
+I ++ + K V+F+P+V QQ + + GDF V YDVNRE+ + D+ V + Y
Sbjct: 225 STVINQNETFAK--VVFKPSVVQQAKI---AQNGILGDFIVRYDVNREQSIGDIQVLDGY 279
Query: 831 FAHFFAPQNLTKLNKNVVFVIDISSSMEGQKVKQTKKALLKILSDLKPGDYFHL 992
F H+FAP++L L KNVVFV+D S+SM G K++QTK AL IL DL+P D+F++
Sbjct: 280 FVHYFAPKDLPPLPKNVVFVLDSSASMVGTKLRQTKDALFTILHDLRPQDHFNI 333
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 37,534,520
Number of extensions: 1030358
Number of successful extensions: 4210
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 4184
Number of HSP's successfully gapped: 5
Length of query: 331
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 228
Effective length of database: 14,273,310
Effective search space: 3254314680
Effective search space used: 3254314680
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002998
(994 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_533794.2| PREDICTED: similar to Inter-alpha-trypsin inhib... 511 e-145
Alignment gi|XP_548489.2| PREDICTED: similar to inter-alpha (globulin) in... 300 1e-81
Alignment gi|XP_848765.1| PREDICTED: similar to inter-alpha (globulin) in... 254 9e-68
Alignment gi|XP_535195.2| PREDICTED: similar to inter-alpha globulin inhi... 223 3e-58
Alignment gi|XP_541846.2| PREDICTED: similar to inter-alpha (globulin) in... 167 1e-41
Alignment gi|XP_544264.2| PREDICTED: similar to inter-alpha trypsin inhib... 163 3e-40
>ref|XP_533794.2| PREDICTED: similar to Inter-alpha-trypsin inhibitor heavy chain H1
precursor (ITI heavy chain H1) (Inter-alpha-inhibitor
heavy chain 1) (Inter-alpha-trypsin inhibitor complex
component III) (Serum-derived hyaluronan-associated
protein) (SHAP) [Canis familiaris].
Length = 910
Score = 511 bits (1316), Expect = e-145
Identities = 258/329 (78%), Positives = 284/329 (86%), Gaps = 7/329 (2%)
Frame = +3
Query: 27 MDGTMXXXXXXXXXXXXXXXXXAMPTQGSPTDSTKGNK-------AVNGVVIRSLKVNCK 185
MDG M MPTQGSPT K NK AV+GV IRSLKVNCK
Sbjct: 1 MDGAMGLRALLCVYLASLLVLQGMPTQGSPTGRPKVNKKRQTLDTAVDGVTIRSLKVNCK 60
Query: 186 VTSRFAHYVVTSQVVNNANKAKEVAFDVEIPKTAFISDFAITADENTFVGDIKDKVTAWK 365
VTSRFAHYV+TSQVVNNA++AKE++FDVEIPKTAFISDFAITAD + F+GDIKDKVTAWK
Sbjct: 61 VTSRFAHYVITSQVVNNADEAKEISFDVEIPKTAFISDFAITADGSAFIGDIKDKVTAWK 120
Query: 366 QYRKAAISGENSGLVRASGRTMEQFAIHVTIGPRSKATFQLTYEEVLRRKLTQYDIVIKV 545
QYRKAAISGEN+GLVRASGRTMEQF IH+TIGPRSKATF+LTYEEVL+R+L QYDIVIKV
Sbjct: 121 QYRKAAISGENAGLVRASGRTMEQFTIHLTIGPRSKATFRLTYEEVLKRRLMQYDIVIKV 180
Query: 546 KPKQLVQHFEIDVDIFEPQGISKLDAQASFLSKEAAAQLIKKSFSGKKGHVLFRPTVGQQ 725
KPKQLV HFEIDVDIFEPQGISKLDA ASFLS + A+QL+KKSFSGK+G VLF PTV QQ
Sbjct: 181 KPKQLVHHFEIDVDIFEPQGISKLDAHASFLSNDLASQLVKKSFSGKQGRVLFHPTVSQQ 240
Query: 726 QSCPTCSTTLLNGDFKVTYDVNREKLCDLLVANNYFAHFFAPQNLTKLNKNVVFVIDISS 905
QSCPTCST+LLNGDFKVTYDVNR++LCDLLVANN+FAHFFAPQNLT +NKNVVFVIDIS+
Sbjct: 241 QSCPTCSTSLLNGDFKVTYDVNRDQLCDLLVANNHFAHFFAPQNLTNMNKNVVFVIDIST 300
Query: 906 SMEGQKVKQTKKALLKILSDLKPGDYFHL 992
SMEGQKVKQTK+ALLKIL D++PGDYF L
Sbjct: 301 SMEGQKVKQTKEALLKILGDMRPGDYFDL 329
>ref|XP_548489.2| PREDICTED: similar to inter-alpha (globulin) inhibitor H3 [Canis
familiaris].
Length = 897
Score = 300 bits (769), Expect = 1e-81
Identities = 142/248 (57%), Positives = 192/248 (77%)
Frame = +3
Query: 246 AKEVAFDVEIPKTAFISDFAITADENTFVGDIKDKVTAWKQYRKAAISGENSGLVRASGR 425
AKEV+FDVE+PKTAFI++F +T D T+ G++K+K A KQY KA G+ +GLV+ASGR
Sbjct: 80 AKEVSFDVELPKTAFITNFTLTIDGVTYPGNVKEKEVAKKQYEKAVSQGKTAGLVKASGR 139
Query: 426 TMEQFAIHVTIGPRSKATFQLTYEEVLRRKLTQYDIVIKVKPKQLVQHFEIDVDIFEPQG 605
+E+F + V + SK TF+LTYEE+L+R+ +Y++ +KV+PKQLV+HFEI+ DI+EPQG
Sbjct: 140 KLEKFTVSVNVAAGSKVTFELTYEELLKRRKGKYEMYLKVQPKQLVKHFEIEADIYEPQG 199
Query: 606 ISKLDAQASFLSKEAAAQLIKKSFSGKKGHVLFRPTVGQQQSCPTCSTTLLNGDFKVTYD 785
IS LDA+ASF++ + + KSFSGKKG V F+P++ QQ+SCPTC+ +LLNGDF +TYD
Sbjct: 200 ISTLDAEASFITNDLLGSALTKSFSGKKGRVSFKPSLDQQRSCPTCTDSLLNGDFIITYD 259
Query: 786 VNREKLCDLLVANNYFAHFFAPQNLTKLNKNVVFVIDISSSMEGQKVKQTKKALLKILSD 965
VNRE ++ + N YF HFFAPQ L + KNVVFVID+S SM G+K++QTK ALLKIL D
Sbjct: 260 VNRESPANVQIVNGYFVHFFAPQGLPVVPKNVVFVIDVSGSMHGRKMEQTKDALLKILGD 319
Query: 966 LKPGDYFH 989
+K DY +
Sbjct: 320 MKGEDYLN 327
>ref|XP_848765.1| PREDICTED: similar to inter-alpha (globulin) inhibitor H4 (plasma
Kallikrein-sensitive glycoprotein) [Canis familiaris].
Length = 826
Score = 254 bits (649), Expect = 9e-68
Identities = 133/285 (46%), Positives = 194/285 (68%), Gaps = 3/285 (1%)
Frame = +3
Query: 147 NGVVIRSLKVNCKVTSRFAHYVVTSQVVNNANKAKEVAFDVEIPKTAFISDFAITADENT 326
N + I S V+ KV+SRFAH VVTS+VVN A +E F VE+PK AFI++F++ + T
Sbjct: 31 NDISIYSFTVDSKVSSRFAHTVVTSRVVNRAETVQEATFQVELPKRAFITNFSMIIEGVT 90
Query: 327 FVGDIKDKVTAWKQYRKAAISGENSGLVRASGRTMEQFAIHVTIGPRSKATFQLTYEEVL 506
+ G+IK+K A +QY A GE++GLV+A+GR EQF + V + P +K TF+L YEE+L
Sbjct: 91 YPGNIKEKAAAQEQYSAAVARGESAGLVKATGRKTEQFQVSVNVAPAAKVTFELVYEELL 150
Query: 507 RRKLTQYDIVIKVKPKQLVQHFEIDVDIFEPQGISKLDAQASFLSKEAAAQLIKKSFSGK 686
+R+L Y++++KV+P+QLV+H ++D+ IFEPQGIS L +++F++ E A + S +
Sbjct: 151 KRQLGVYELLLKVQPQQLVKHLQMDIHIFEPQGISFLKTESTFMTSE-LANALTISQNKT 209
Query: 687 KGHVLFRP--TVGQQQSCPTCSTTLLNGDFKVTYDVNRE-KLCDLLVANNYFAHFFAPQN 857
K H+ F+P T GQ +L+G+F V YDVNR + + N YF H+FAP+
Sbjct: 210 KAHIQFKPQKTAGQLDK-------VLDGNFIVRYDVNRTLSGGSIQIENGYFVHYFAPEG 262
Query: 858 LTKLNKNVVFVIDISSSMEGQKVKQTKKALLKILSDLKPGDYFHL 992
L + KNV+FVID S SM G+K++QT++AL+KIL DLKP D F+L
Sbjct: 263 LPTIPKNVIFVIDKSGSMSGRKIQQTREALIKILDDLKPNDQFNL 307
>ref|XP_535195.2| PREDICTED: similar to inter-alpha globulin inhibitor H2 polypeptide
[Canis familiaris].
Length = 946
Score = 223 bits (567), Expect = 3e-58
Identities = 120/279 (43%), Positives = 172/279 (61%), Gaps = 1/279 (0%)
Frame = +3
Query: 153 VVIRSLKVNCKVTSRFAHYVVTSQVVNNANKAKEVAFDVEIPKTAFISDFAITADENTFV 332
V + S KV +TSR A+ ++ +++VNN+ + + V FDV+IPK AFIS+F++T D TF
Sbjct: 70 VTLYSYKVQSTITSRMANTIIQTKLVNNSPQPQNVVFDVQIPKGAFISNFSMTVDGTTFT 129
Query: 333 GDIKDKVTAWKQYRKAAISGENSGLVRASGRTMEQFAIHVTIGPRSKATFQLTYEEVLRR 512
I++K Y +A G+ +GLVR+ ME F V I P +K F+L Y+EV R
Sbjct: 130 SSIREKTVGRALYSQARAKGKTTGLVRSRALDMENFQTEVNILPGAKVQFELHYQEVKWR 189
Query: 513 KLTQYDIVIKVKPKQLVQHFEIDVDIFEPQGISKLDAQASFLSKEAAAQLIKKSFSGKKG 692
KL Y+ + ++P +L +H E+DV + EPQGI L +F +I K +K
Sbjct: 190 KLGSYEHRLHLQPGRLAKHLEVDVWVIEPQGIRFLHVPDTFDGHFDGVPVISK--GQQKA 247
Query: 693 HVLFRPTVGQQQSCPTCSTTLLNGDFKVTYDVNR-EKLCDLLVANNYFAHFFAPQNLTKL 869
HV F+P+V +Q+ C CS T ++G+ V YDVNR EK +L V N YF HFFAP+NL +
Sbjct: 248 HVSFKPSVARQRKCSNCSETAVDGELVVMYDVNREEKAGELEVFNGYFVHFFAPENLDPI 307
Query: 870 NKNVVFVIDISSSMEGQKVKQTKKALLKILSDLKPGDYF 986
KN++FVID+S SM G K+KQT +A+ IL DL+ D F
Sbjct: 308 PKNILFVIDVSGSMWGIKMKQTVEAMKTILDDLRAEDQF 346
>ref|XP_541846.2| PREDICTED: similar to inter-alpha (globulin) inhibitor H3 [Canis
familiaris].
Length = 243
Score = 167 bits (424), Expect = 1e-41
Identities = 78/144 (54%), Positives = 112/144 (77%)
Frame = +3
Query: 147 NGVVIRSLKVNCKVTSRFAHYVVTSQVVNNANKAKEVAFDVEIPKTAFISDFAITADENT 326
NG+ + S K++CKVTSRFAH VVT++ V A+ AKEV+FDVE+PKTAFI++F +T D T
Sbjct: 41 NGIEVYSTKISCKVTSRFAHNVVTTRAVYRADTAKEVSFDVELPKTAFITNFTLTIDGVT 100
Query: 327 FVGDIKDKVTAWKQYRKAAISGENSGLVRASGRTMEQFAIHVTIGPRSKATFQLTYEEVL 506
+ G++K+K A KQY KA G+ +GLV+ASGR +E+F + V + SK TF+LTYEE+L
Sbjct: 101 YPGNVKEKEVAKKQYEKAVSQGKTAGLVKASGRKLEKFTVSVNVAAGSKVTFELTYEELL 160
Query: 507 RRKLTQYDIVIKVKPKQLVQHFEI 578
+R+ +Y++ +KV+PKQLV+HFE+
Sbjct: 161 KRRKGKYEMYLKVQPKQLVKHFEV 184
>ref|XP_544264.2| PREDICTED: similar to inter-alpha trypsin inhibitor heavy chain
precursor 5 isoform 1 [Canis familiaris].
Length = 893
Score = 163 bits (412), Expect = 3e-40
Identities = 103/294 (35%), Positives = 167/294 (56%), Gaps = 15/294 (5%)
Frame = +3
Query: 156 VIRSLKVNCKVTSRFAHYVVTSQVVNNANKAKEVAFDVEIPKTAFISDFAITADENTFVG 335
++ V + SR+A V+ +++N A++ +E+ F ++IP AFI++F + + F G
Sbjct: 7 LMTEFSVKSTIISRYAFTTVSCRLLNRASEDQEIEFQMQIPAAAFITNFTMLLGDQVFQG 66
Query: 336 DI--KDKVTAWKQYRKAAISGENSGLVRASGRTMEQFAIHVTIGPRSKATFQLTYEEVLR 509
+I ++K K K + E++G + E F V I + KA F L+YEE+L+
Sbjct: 67 EITEREKKNGDKLKEKRNKTSEDNG-----EKGTEMFRASVVIPSKDKAAFFLSYEELLQ 121
Query: 510 RKLTQYDIVIKVKPKQLVQHFEIDVDIFEPQGISKLDAQASFLSKEAAA----------- 656
R+L +Y+ VI V+P+QLV ++V+I E G+ L+ S++ +
Sbjct: 122 RRLGKYEHVISVRPQQLVGRLMVEVNILERSGLESLEVLPLQHSRQKGSGRGEDDSGPPP 181
Query: 657 -QLIKKSFSGKKGHVLFRPTVGQQQSCPTCSTTLLNGDFKVTYDVNREK-LCDLLVANNY 830
+I ++ + K V F+P+V QQ + + GDF + YDVNRE+ + D+ V N Y
Sbjct: 182 STVINQNDTFAK--VTFKPSVVQQAKI---AQNGILGDFIIRYDVNREQSIGDIEVLNGY 236
Query: 831 FAHFFAPQNLTKLNKNVVFVIDISSSMEGQKVKQTKKALLKILSDLKPGDYFHL 992
F H+FAP++L L KNVVFV+D S+SM G K++QTK AL IL DL+P D+F +
Sbjct: 237 FVHYFAPRDLPPLPKNVVFVLDSSASMVGTKLRQTKDALFTILHDLRPQDHFSI 290
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 39,127,183
Number of extensions: 1054084
Number of successful extensions: 4126
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 4102
Number of HSP's successfully gapped: 6
Length of query: 331
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 228
Effective length of database: 15,440,896
Effective search space: 3520524288
Effective search space used: 3520524288
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002998
(994 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_002206.2| inter-alpha-trypsin inhibitor heavy chain H1 is... 495 e-140
Alignment gi|NP_002208.3| inter-alpha-trypsin inhibitor heavy chain H3 pr... 338 3e-93
Alignment gi|NP_001159906.1| inter-alpha-trypsin inhibitor heavy chain H1... 321 7e-88
Alignment gi|NP_001159921.1| inter-alpha-trypsin inhibitor heavy chain H4... 270 2e-72
Alignment gi|NP_002209.2| inter-alpha-trypsin inhibitor heavy chain H4 is... 270 2e-72
Alignment gi|NP_002207.2| inter-alpha-trypsin inhibitor heavy chain H2 [H... 230 2e-60
Alignment gi|NP_940912.1| inter-alpha-trypsin inhibitor heavy chain H5-li... 176 4e-44
Alignment gi|NP_085046.5| inter-alpha-trypsin inhibitor heavy chain H5 is... 155 4e-38
Alignment gi|NP_001001851.1| inter-alpha-trypsin inhibitor heavy chain H5... 155 4e-38
Alignment gi|NP_116206.4| inter-alpha-trypsin inhibitor heavy chain H5 is... 94 3e-19
>ref|NP_002206.2| inter-alpha-trypsin inhibitor heavy chain H1 isoform a [Homo
sapiens].
Length = 911
Score = 495 bits (1275), Expect = e-140
Identities = 249/307 (81%), Positives = 273/307 (88%), Gaps = 7/307 (2%)
Frame = +3
Query: 93 AMPTQGSPTDSTKGNK-------AVNGVVIRSLKVNCKVTSRFAHYVVTSQVVNNANKAK 251
AMP GS T +K ++ AV+GV IRSLKVNCKVTSRFAHYVVTSQVVN AN+A+
Sbjct: 24 AMPALGSATGRSKSSEKRQAVDTAVDGVFIRSLKVNCKVTSRFAHYVVTSQVVNTANEAR 83
Query: 252 EVAFDVEIPKTAFISDFAITADENTFVGDIKDKVTAWKQYRKAAISGENSGLVRASGRTM 431
EVAFD+EIPKTAFISDFA+TAD N F+GDIKDKVTAWKQYRKAAISGEN+GLVRASGRTM
Sbjct: 84 EVAFDLEIPKTAFISDFAVTADGNAFIGDIKDKVTAWKQYRKAAISGENAGLVRASGRTM 143
Query: 432 EQFAIHVTIGPRSKATFQLTYEEVLRRKLTQYDIVIKVKPKQLVQHFEIDVDIFEPQGIS 611
EQF IH+T+ P+SK TFQLTYEEVL+R QY+IVIKVKPKQLV HFEIDVDIFEPQGIS
Sbjct: 144 EQFTIHLTVNPQSKVTFQLTYEEVLKRNHMQYEIVIKVKPKQLVHHFEIDVDIFEPQGIS 203
Query: 612 KLDAQASFLSKEAAAQLIKKSFSGKKGHVLFRPTVGQQQSCPTCSTTLLNGDFKVTYDVN 791
KLDAQASFL KE AAQ IKKSFSGKKGHVLFRPTV QQQSCPTCST+LLNG FKVTYDV+
Sbjct: 204 KLDAQASFLPKELAAQTIKKSFSGKKGHVLFRPTVSQQQSCPTCSTSLLNGHFKVTYDVS 263
Query: 792 REKLCDLLVANNYFAHFFAPQNLTKLNKNVVFVIDISSSMEGQKVKQTKKALLKILSDLK 971
R+K+CDLLVANN+FAHFFAPQNLT +NKNVVFVIDIS SM GQKVKQTK+ALLKIL D++
Sbjct: 264 RDKICDLLVANNHFAHFFAPQNLTNMNKNVVFVIDISGSMRGQKVKQTKEALLKILGDMQ 323
Query: 972 PGDYFHL 992
PGDYF L
Sbjct: 324 PGDYFDL 330
>ref|NP_002208.3| inter-alpha-trypsin inhibitor heavy chain H3 preproprotein [Homo
sapiens].
Length = 890
Score = 338 bits (868), Expect = 3e-93
Identities = 162/281 (57%), Positives = 217/281 (77%)
Frame = +3
Query: 147 NGVVIRSLKVNCKVTSRFAHYVVTSQVVNNANKAKEVAFDVEIPKTAFISDFAITADENT 326
NG+ + S K+N KVTSRFAH VVT + VN A+ AKEV+FDVE+PKTAFI++F +T D T
Sbjct: 41 NGIEVYSTKINSKVTSRFAHNVVTMRAVNRADTAKEVSFDVELPKTAFITNFTLTIDGVT 100
Query: 327 FVGDIKDKVTAWKQYRKAAISGENSGLVRASGRTMEQFAIHVTIGPRSKATFQLTYEEVL 506
+ G++K+K A KQY KA G+ +GLV+ASGR +E+F + V + SK TF+LTYEE+L
Sbjct: 101 YPGNVKEKEVAKKQYEKAVSQGKTAGLVKASGRKLEKFTVSVNVAAGSKVTFELTYEELL 160
Query: 507 RRKLTQYDIVIKVKPKQLVQHFEIDVDIFEPQGISKLDAQASFLSKEAAAQLIKKSFSGK 686
+R +Y++ +KV+PKQLV+HFEI+VDIFEPQGIS LDA+ASF++ + + KSFSGK
Sbjct: 161 KRHKGKYEMYLKVQPKQLVKHFEIEVDIFEPQGISMLDAEASFITNDLLGSALTKSFSGK 220
Query: 687 KGHVLFRPTVGQQQSCPTCSTTLLNGDFKVTYDVNREKLCDLLVANNYFAHFFAPQNLTK 866
KGHV F+P++ QQ+SCPTC+ +LLNGDF +TYDVNRE ++ + N YF HFFAPQ L
Sbjct: 221 KGHVSFKPSLDQQRSCPTCTDSLLNGDFTITYDVNRESPGNVQIVNGYFVHFFAPQGLPV 280
Query: 867 LNKNVVFVIDISSSMEGQKVKQTKKALLKILSDLKPGDYFH 989
+ KNV FVIDIS SM G+K++QTK+ALL+IL D++ DY +
Sbjct: 281 VPKNVAFVIDISGSMAGRKLEQTKEALLRILEDMQEEDYLN 321
>ref|NP_001159906.1| inter-alpha-trypsin inhibitor heavy chain H1 isoform b [Homo
sapiens].
Length = 769
Score = 321 bits (822), Expect = 7e-88
Identities = 157/188 (83%), Positives = 171/188 (90%)
Frame = +3
Query: 429 MEQFAIHVTIGPRSKATFQLTYEEVLRRKLTQYDIVIKVKPKQLVQHFEIDVDIFEPQGI 608
MEQF IH+T+ P+SK TFQLTYEEVL+R QY+IVIKVKPKQLV HFEIDVDIFEPQGI
Sbjct: 1 MEQFTIHLTVNPQSKVTFQLTYEEVLKRNHMQYEIVIKVKPKQLVHHFEIDVDIFEPQGI 60
Query: 609 SKLDAQASFLSKEAAAQLIKKSFSGKKGHVLFRPTVGQQQSCPTCSTTLLNGDFKVTYDV 788
SKLDAQASFL KE AAQ IKKSFSGKKGHVLFRPTV QQQSCPTCST+LLNG FKVTYDV
Sbjct: 61 SKLDAQASFLPKELAAQTIKKSFSGKKGHVLFRPTVSQQQSCPTCSTSLLNGHFKVTYDV 120
Query: 789 NREKLCDLLVANNYFAHFFAPQNLTKLNKNVVFVIDISSSMEGQKVKQTKKALLKILSDL 968
+R+K+CDLLVANN+FAHFFAPQNLT +NKNVVFVIDIS SM GQKVKQTK+ALLKIL D+
Sbjct: 121 SRDKICDLLVANNHFAHFFAPQNLTNMNKNVVFVIDISGSMRGQKVKQTKEALLKILGDM 180
Query: 969 KPGDYFHL 992
+PGDYF L
Sbjct: 181 QPGDYFDL 188
>ref|NP_001159921.1| inter-alpha-trypsin inhibitor heavy chain H4 isoform 2 precursor
[Homo sapiens].
Length = 900
Score = 270 bits (690), Expect = 2e-72
Identities = 134/283 (47%), Positives = 199/283 (70%), Gaps = 1/283 (0%)
Frame = +3
Query: 147 NGVVIRSLKVNCKVTSRFAHYVVTSQVVNNANKAKEVAFDVEIPKTAFISDFAITADENT 326
NG+ I SL V+ +V+SRFAH VVTS+VVN AN +E F +E+PK AFI++F++ D T
Sbjct: 31 NGIDIYSLTVDSRVSSRFAHTVVTSRVVNRANTVQEATFQMELPKKAFITNFSMIIDGMT 90
Query: 327 FVGDIKDKVTAWKQYRKAAISGENSGLVRASGRTMEQFAIHVTIGPRSKATFQLTYEEVL 506
+ G IK+K A QY A G+++GLV+A+GR MEQF + V++ P +K TF+L YEE+L
Sbjct: 91 YPGIIKEKAEAQAQYSAAVAKGKSAGLVKATGRNMEQFQVSVSVAPNAKITFELVYEELL 150
Query: 507 RRKLTQYDIVIKVKPKQLVQHFEIDVDIFEPQGISKLDAQASFLSKEAAAQLIKKSFSGK 686
+R+L Y++++KV+P+QLV+H ++D+ IFEPQGIS L+ +++F++ + L +
Sbjct: 151 KRRLGVYELLLKVRPQQLVKHLQMDIHIFEPQGISFLETESTFMTNQLVDALTTWQ-NKT 209
Query: 687 KGHVLFRPTVGQQQSCPTCSTTLLNGDFKVTYDVNRE-KLCDLLVANNYFAHFFAPQNLT 863
K H+ F+PT+ QQQ P T+L+G+ + YDV+R + + N YF H+FAP+ LT
Sbjct: 210 KAHIRFKPTLSQQQKSPEQQETVLDGNLIIRYDVDRAISGGSIQIENGYFVHYFAPEGLT 269
Query: 864 KLNKNVVFVIDISSSMEGQKVKQTKKALLKILSDLKPGDYFHL 992
+ KNVVFVID S SM G+K++QT++AL+KIL DL P D F+L
Sbjct: 270 TMPKNVVFVIDKSGSMSGRKIQQTREALIKILDDLSPRDQFNL 312
>ref|NP_002209.2| inter-alpha-trypsin inhibitor heavy chain H4 isoform 1 precursor
[Homo sapiens].
Length = 930
Score = 270 bits (690), Expect = 2e-72
Identities = 134/283 (47%), Positives = 199/283 (70%), Gaps = 1/283 (0%)
Frame = +3
Query: 147 NGVVIRSLKVNCKVTSRFAHYVVTSQVVNNANKAKEVAFDVEIPKTAFISDFAITADENT 326
NG+ I SL V+ +V+SRFAH VVTS+VVN AN +E F +E+PK AFI++F++ D T
Sbjct: 31 NGIDIYSLTVDSRVSSRFAHTVVTSRVVNRANTVQEATFQMELPKKAFITNFSMIIDGMT 90
Query: 327 FVGDIKDKVTAWKQYRKAAISGENSGLVRASGRTMEQFAIHVTIGPRSKATFQLTYEEVL 506
+ G IK+K A QY A G+++GLV+A+GR MEQF + V++ P +K TF+L YEE+L
Sbjct: 91 YPGIIKEKAEAQAQYSAAVAKGKSAGLVKATGRNMEQFQVSVSVAPNAKITFELVYEELL 150
Query: 507 RRKLTQYDIVIKVKPKQLVQHFEIDVDIFEPQGISKLDAQASFLSKEAAAQLIKKSFSGK 686
+R+L Y++++KV+P+QLV+H ++D+ IFEPQGIS L+ +++F++ + L +
Sbjct: 151 KRRLGVYELLLKVRPQQLVKHLQMDIHIFEPQGISFLETESTFMTNQLVDALTTWQ-NKT 209
Query: 687 KGHVLFRPTVGQQQSCPTCSTTLLNGDFKVTYDVNRE-KLCDLLVANNYFAHFFAPQNLT 863
K H+ F+PT+ QQQ P T+L+G+ + YDV+R + + N YF H+FAP+ LT
Sbjct: 210 KAHIRFKPTLSQQQKSPEQQETVLDGNLIIRYDVDRAISGGSIQIENGYFVHYFAPEGLT 269
Query: 864 KLNKNVVFVIDISSSMEGQKVKQTKKALLKILSDLKPGDYFHL 992
+ KNVVFVID S SM G+K++QT++AL+KIL DL P D F+L
Sbjct: 270 TMPKNVVFVIDKSGSMSGRKIQQTREALIKILDDLSPRDQFNL 312
>ref|NP_002207.2| inter-alpha-trypsin inhibitor heavy chain H2 [Homo sapiens].
Length = 946
Score = 230 bits (586), Expect = 2e-60
Identities = 127/292 (43%), Positives = 178/292 (60%), Gaps = 1/292 (0%)
Frame = +3
Query: 114 PTDSTKGNKAVNGVVIRSLKVNCKVTSRFAHYVVTSQVVNNANKAKEVAFDVEIPKTAFI 293
P +S + + V+ V + S KV +TSR A ++ S+VVNN+ + + V FDV+IPK AFI
Sbjct: 57 PGESEEMMEEVDQVTLYSYKVQSTITSRMATTMIQSKVVNNSPQPQNVVFDVQIPKGAFI 116
Query: 294 SDFAITADENTFVGDIKDKVTAWKQYRKAAISGENSGLVRASGRTMEQFAIHVTIGPRSK 473
S+F++T D TF IK+K Y +A G+ +GLVR+S ME F V + P +K
Sbjct: 117 SNFSMTVDGKTFRSSIKEKTVGRALYAQARAKGKTAGLVRSSALDMENFRTEVNVLPGAK 176
Query: 474 ATFQLTYEEVLRRKLTQYDIVIKVKPKQLVQHFEIDVDIFEPQGISKLDAQASFLSKEAA 653
F+L Y+EV RKL Y+ I ++P +L +H E+DV + EPQG+ L +F
Sbjct: 177 VQFELHYQEVKWRKLGSYEHRIYLQPGRLAKHLEVDVWVIEPQGLRFLHVPDTFEGHFDG 236
Query: 654 AQLIKKSFSGKKGHVLFRPTVGQQQSCPTCSTTLLNGDFKVTYDVNR-EKLCDLLVANNY 830
+I K +K HV F+PTV QQ+ CP C T ++G+ V YDV R EK +L V N Y
Sbjct: 237 VPVISK--GQQKAHVSFKPTVAQQRICPNCRETAVDGELVVLYDVKREEKAGELEVFNGY 294
Query: 831 FAHFFAPQNLTKLNKNVVFVIDISSSMEGQKVKQTKKALLKILSDLKPGDYF 986
F HFFAP NL + KN++FVID+S SM G K+KQT +A+ IL DL+ D+F
Sbjct: 295 FVHFFAPDNLDPIPKNILFVIDVSGSMWGVKMKQTVEAMKTILDDLRAEDHF 346
>ref|NP_940912.1| inter-alpha-trypsin inhibitor heavy chain H5-like protein precursor
[Homo sapiens].
Length = 1313
Score = 176 bits (445), Expect = 4e-44
Identities = 107/309 (34%), Positives = 173/309 (55%), Gaps = 13/309 (4%)
Frame = +3
Query: 105 QGSPTDSTKGNKAVNGVVIRSLKVNCKVTSRFAHYVVTSQVVNNANKAKEVAFDVEIPKT 284
QG P ++ K +++ S + V SR+AH +VTS + N +A E FD+++P
Sbjct: 23 QGPPVPASSSTK----LLMTSYSMRSTVVSRYAHTLVTSVLFNPHAEAHEAIFDLDLPHL 78
Query: 285 AFISDFAITADENTFVGDIKDKVTAWKQYRKAAISGENSGLVRASGRTMEQFAIHVTIGP 464
AFIS+F +T + ++ ++K+K A K Y +A G+ + V R E+F I ++
Sbjct: 79 AFISNFTMTINNKVYIAEVKEKHQAKKIYEEAHQQGKTAAHVGIRDRESEKFRISTSLAA 138
Query: 465 RSKATFQLTYEEVLRRKLTQYDIVIKVKPKQLVQHFEIDVDIFEPQGIS----------- 611
++ TF L YEE+L+R QY +V+ ++P QLV+ I+V + E GIS
Sbjct: 139 GTEVTFSLAYEELLQRHQGQYQLVVSLRPGQLVKRLSIEVTVSERTGISYVHIPPLRTGR 198
Query: 612 -KLDAQASFLSKEAAAQLIKKSFSGKKGHVLFRPTVGQQQSCPTCSTTLLNGDFKVTYDV 788
+ +A AS + + ++ + + + + PT+ Q S S + + DF V YDV
Sbjct: 199 LRTNAHASEVDSPPSTRIERGETCVR---ITYCPTLQDQSS---ISGSGIMADFLVQYDV 252
Query: 789 NREKLC-DLLVANNYFAHFFAPQNLTKLNKNVVFVIDISSSMEGQKVKQTKKALLKILSD 965
E + D+ + ++YF H+FAP+ L + KNVVFVID+SSSM G K++QTK A+ ILSD
Sbjct: 253 VMEDIIGDVQIYDDYFIHYFAPRGLPPMEKNVVFVIDVSSSMFGTKMEQTKTAMNVILSD 312
Query: 966 LKPGDYFHL 992
L+ DYF++
Sbjct: 313 LQANDYFNI 321
>ref|NP_085046.5| inter-alpha-trypsin inhibitor heavy chain H5 isoform 1 precursor
[Homo sapiens].
Length = 942
Score = 155 bits (393), Expect = 4e-38
Identities = 99/293 (33%), Positives = 163/293 (55%), Gaps = 14/293 (4%)
Frame = +3
Query: 156 VIRSLKVNCKVTSRFAHYVVTSQVVNNANKAKEVAFDVEIPKTAFISDFAITADENTFVG 335
++ V + SR+A V+ +++N A++ +++ F ++IP AFI++F + + + G
Sbjct: 50 LMTEFSVKSTIISRYAFTTVSCRMLNRASEDQDIEFQMQIPAAAFITNFTMLIGDKVYQG 109
Query: 336 DI--KDKVTAWKQYRKAAISGENSGLVRASGRTMEQFAIHVTIGPRSKATFQLTYEEVLR 509
+I ++K + + K + E +G + E F I + KA F L+YEE+L+
Sbjct: 110 EITEREKKSGDRVKEKRNKTTEENG-----EKGTEIFRASAVIPSKDKAAFFLSYEELLQ 164
Query: 510 RKLTQYDIVIKVKPKQLVQHFEIDVDIFEPQGISKLDAQASFLSKEAAAQLIKKSFSGKK 689
R+L +Y+ I V+P+QL +DV+I E GI+ L+ S++ + + SG
Sbjct: 165 RRLGKYEHSISVRPQQLSGRLSVDVNILESAGIASLEVLPLHNSRQRGSGRGEDD-SGPP 223
Query: 690 -----------GHVLFRPTVGQQQSCPTCSTTLLNGDFKVTYDVNREK-LCDLLVANNYF 833
+++F+PTV QQ + + GDF + YDVNRE+ + D+ V N YF
Sbjct: 224 PSTVINQNETFANIIFKPTVVQQARI---AQNGILGDFIIRYDVNREQSIGDIQVLNGYF 280
Query: 834 AHFFAPQNLTKLNKNVVFVIDISSSMEGQKVKQTKKALLKILSDLKPGDYFHL 992
H+FAP++L L KNVVFV+D S+SM G K++QTK AL IL DL+P D F +
Sbjct: 281 VHYFAPKDLPPLPKNVVFVLDSSASMVGTKLRQTKDALFTILHDLRPQDRFSI 333
>ref|NP_001001851.1| inter-alpha-trypsin inhibitor heavy chain H5 isoform 3 precursor
[Homo sapiens].
Length = 702
Score = 155 bits (393), Expect = 4e-38
Identities = 99/293 (33%), Positives = 163/293 (55%), Gaps = 14/293 (4%)
Frame = +3
Query: 156 VIRSLKVNCKVTSRFAHYVVTSQVVNNANKAKEVAFDVEIPKTAFISDFAITADENTFVG 335
++ V + SR+A V+ +++N A++ +++ F ++IP AFI++F + + + G
Sbjct: 50 LMTEFSVKSTIISRYAFTTVSCRMLNRASEDQDIEFQMQIPAAAFITNFTMLIGDKVYQG 109
Query: 336 DI--KDKVTAWKQYRKAAISGENSGLVRASGRTMEQFAIHVTIGPRSKATFQLTYEEVLR 509
+I ++K + + K + E +G + E F I + KA F L+YEE+L+
Sbjct: 110 EITEREKKSGDRVKEKRNKTTEENG-----EKGTEIFRASAVIPSKDKAAFFLSYEELLQ 164
Query: 510 RKLTQYDIVIKVKPKQLVQHFEIDVDIFEPQGISKLDAQASFLSKEAAAQLIKKSFSGKK 689
R+L +Y+ I V+P+QL +DV+I E GI+ L+ S++ + + SG
Sbjct: 165 RRLGKYEHSISVRPQQLSGRLSVDVNILESAGIASLEVLPLHNSRQRGSGRGEDD-SGPP 223
Query: 690 -----------GHVLFRPTVGQQQSCPTCSTTLLNGDFKVTYDVNREK-LCDLLVANNYF 833
+++F+PTV QQ + + GDF + YDVNRE+ + D+ V N YF
Sbjct: 224 PSTVINQNETFANIIFKPTVVQQARI---AQNGILGDFIIRYDVNREQSIGDIQVLNGYF 280
Query: 834 AHFFAPQNLTKLNKNVVFVIDISSSMEGQKVKQTKKALLKILSDLKPGDYFHL 992
H+FAP++L L KNVVFV+D S+SM G K++QTK AL IL DL+P D F +
Sbjct: 281 VHYFAPKDLPPLPKNVVFVLDSSASMVGTKLRQTKDALFTILHDLRPQDRFSI 333
>ref|NP_116206.4| inter-alpha-trypsin inhibitor heavy chain H5 isoform 2 [Homo
sapiens].
Length = 728
Score = 93.6 bits (231), Expect = 3e-19
Identities = 50/101 (49%), Positives = 69/101 (68%), Gaps = 1/101 (0%)
Frame = +3
Query: 693 HVLFRPTVGQQQSCPTCSTTLLNGDFKVTYDVNREK-LCDLLVANNYFAHFFAPQNLTKL 869
+++F+PTV QQ + + GDF + YDVNRE+ + D+ V N YF H+FAP++L L
Sbjct: 22 NIIFKPTVVQQARI---AQNGILGDFIIRYDVNREQSIGDIQVLNGYFVHYFAPKDLPPL 78
Query: 870 NKNVVFVIDISSSMEGQKVKQTKKALLKILSDLKPGDYFHL 992
KNVVFV+D S+SM G K++QTK AL IL DL+P D F +
Sbjct: 79 PKNVVFVLDSSASMVGTKLRQTKDALFTILHDLRPQDRFSI 119
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 38,498,098
Number of extensions: 1045224
Number of successful extensions: 4146
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 4114
Number of HSP's successfully gapped: 12
Length of query: 331
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 228
Effective length of database: 14,901,872
Effective search space: 3397626816
Effective search space used: 3397626816
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002998
(994 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_032432.2| inter-alpha-trypsin inhibitor heavy chain H1 pr... 482 e-136
Alignment gi|NP_032433.2| inter-alpha-trypsin inhibitor heavy chain H3 pr... 340 8e-94
Alignment gi|NP_001152771.1| inter alpha-trypsin inhibitor, heavy chain 4... 268 4e-72
Alignment gi|NP_061216.2| inter alpha-trypsin inhibitor, heavy chain 4 is... 268 4e-72
Alignment gi|NP_034712.2| inter-alpha-trypsin inhibitor heavy chain H2 [M... 226 2e-59
Alignment gi|XP_003085348.1| PREDICTED: LOW QUALITY PROTEIN: inter-alpha ... 178 7e-45
Alignment gi|XP_003086909.1| PREDICTED: LOW QUALITY PROTEIN: inter-alpha ... 178 7e-45
Alignment gi|NP_766059.1| inter-alpha-trypsin inhibitor heavy chain H5 pr... 165 6e-41
>ref|NP_032432.2| inter-alpha-trypsin inhibitor heavy chain H1 precursor [Mus
musculus].
Length = 907
Score = 482 bits (1240), Expect = e-136
Identities = 240/307 (78%), Positives = 272/307 (88%), Gaps = 7/307 (2%)
Frame = +3
Query: 93 AMPTQGSPTDSTKGNK-------AVNGVVIRSLKVNCKVTSRFAHYVVTSQVVNNANKAK 251
A P G T +G++ +VNGV I+SLKVNCKVTSRFAHYV+TSQVVNNA+KA+
Sbjct: 21 ARPALGLATGRPRGSEKRHAVDTSVNGVSIKSLKVNCKVTSRFAHYVITSQVVNNADKAR 80
Query: 252 EVAFDVEIPKTAFISDFAITADENTFVGDIKDKVTAWKQYRKAAISGENSGLVRASGRTM 431
EVAFDVEIPKTAFISDFAIT+D F+GDIKDKVTAWKQYRKAA+ GE++GLVRASGR M
Sbjct: 81 EVAFDVEIPKTAFISDFAITSDGKAFIGDIKDKVTAWKQYRKAAVLGESAGLVRASGRNM 140
Query: 432 EQFAIHVTIGPRSKATFQLTYEEVLRRKLTQYDIVIKVKPKQLVQHFEIDVDIFEPQGIS 611
EQF IH+T+G +SKATF+LTYEEVL+R+L QYDI IKV+PKQLVQHFEIDVDIFEPQGIS
Sbjct: 141 EQFTIHITVGAQSKATFRLTYEEVLKRRLMQYDITIKVRPKQLVQHFEIDVDIFEPQGIS 200
Query: 612 KLDAQASFLSKEAAAQLIKKSFSGKKGHVLFRPTVGQQQSCPTCSTTLLNGDFKVTYDVN 791
KLDAQASFLS+E AAQ IKKSFSGKKGHVLFRPTV QQQSCPTCST+LLNG+FKVTYDVN
Sbjct: 201 KLDAQASFLSEELAAQTIKKSFSGKKGHVLFRPTVSQQQSCPTCSTSLLNGEFKVTYDVN 260
Query: 792 REKLCDLLVANNYFAHFFAPQNLTKLNKNVVFVIDISSSMEGQKVKQTKKALLKILSDLK 971
R+KLCDLLVANNYF HFFAP+NLT ++KN+VFVIDIS SMEGQKV+QTK+ALLKIL D++
Sbjct: 261 RDKLCDLLVANNYFTHFFAPKNLTNMSKNLVFVIDISGSMEGQKVRQTKEALLKILEDMR 320
Query: 972 PGDYFHL 992
P D F L
Sbjct: 321 PVDNFDL 327
>ref|NP_032433.2| inter-alpha-trypsin inhibitor heavy chain H3 precursor [Mus
musculus].
Length = 889
Score = 340 bits (873), Expect = 8e-94
Identities = 160/282 (56%), Positives = 218/282 (77%)
Frame = +3
Query: 144 VNGVVIRSLKVNCKVTSRFAHYVVTSQVVNNANKAKEVAFDVEIPKTAFISDFAITADEN 323
V+G+ + S K++CKVTSRFAH VVT++ VN A+ AKEV+FDVE+PKTAFI++F +T D
Sbjct: 40 VDGIEVYSTKISCKVTSRFAHNVVTTRAVNRADTAKEVSFDVELPKTAFITNFTLTIDGV 99
Query: 324 TFVGDIKDKVTAWKQYRKAAISGENSGLVRASGRTMEQFAIHVTIGPRSKATFQLTYEEV 503
T+ G++K+K A KQY KA G+ +GLV+ASGR +E+F + V + SK TF+LTYEE+
Sbjct: 100 TYPGNVKEKEVAQKQYEKAVSQGKTAGLVKASGRKLEKFTVSVNVAAGSKVTFELTYEEL 159
Query: 504 LRRKLTQYDIVIKVKPKQLVQHFEIDVDIFEPQGISKLDAQASFLSKEAAAQLIKKSFSG 683
L+R +Y++ +KV+PKQLV+HFEID IFEPQGIS LDA+ASF++ + + KSFSG
Sbjct: 160 LKRNKGKYEMYLKVQPKQLVRHFEIDAHIFEPQGISMLDAEASFITNDLLGSALTKSFSG 219
Query: 684 KKGHVLFRPTVGQQQSCPTCSTTLLNGDFKVTYDVNREKLCDLLVANNYFAHFFAPQNLT 863
KKGHV F+P++ QQ+SCPTC+ +LLNGDF + YDVNRE ++ + N YF HFFAPQ L
Sbjct: 220 KKGHVSFKPSLDQQRSCPTCTDSLLNGDFTIVYDVNRESPGNVQIVNGYFVHFFAPQGLP 279
Query: 864 KLNKNVVFVIDISSSMEGQKVKQTKKALLKILSDLKPGDYFH 989
+ KN+VFVID+S SM G+K++QT++ALLKIL D+K DY +
Sbjct: 280 VVPKNIVFVIDVSGSMSGRKIQQTREALLKILDDVKEDDYLN 321
>ref|NP_001152771.1| inter alpha-trypsin inhibitor, heavy chain 4 isoform 2 [Mus
musculus].
Length = 941
Score = 268 bits (686), Expect = 4e-72
Identities = 134/283 (47%), Positives = 200/283 (70%), Gaps = 1/283 (0%)
Frame = +3
Query: 147 NGVVIRSLKVNCKVTSRFAHYVVTSQVVNNANKAKEVAFDVEIPKTAFISDFAITADENT 326
NG+ I SL V+ +V+SRFAH VVTS+VVN A+ +E F VE+P+ AFI++F++ D T
Sbjct: 31 NGIDIYSLTVDSRVSSRFAHTVVTSRVVNRADAVQEATFQVELPRKAFITNFSMIIDGVT 90
Query: 327 FVGDIKDKVTAWKQYRKAAISGENSGLVRASGRTMEQFAIHVTIGPRSKATFQLTYEEVL 506
+ G +K+K A KQY A GE++G+V+ +GR E+F + V + P SK TF+L Y+E+L
Sbjct: 91 YPGVVKEKAEAQKQYSAAVGRGESAGIVKTTGRQTEKFEVSVNVAPGSKITFELIYQELL 150
Query: 507 RRKLTQYDIVIKVKPKQLVQHFEIDVDIFEPQGISKLDAQASFLSKEAAAQLIKKSFSGK 686
+R+L Y++++KV+P+QLV+H ++D+ IFEPQGIS L+ +++F++ E A + S +
Sbjct: 151 QRRLGMYELLLKVRPQQLVKHLQMDIYIFEPQGISILETESTFMTPE-LANALTTSQNKT 209
Query: 687 KGHVLFRPTVGQQQSCPTCSTTLLNGDFKVTYDVNR-EKLCDLLVANNYFAHFFAPQNLT 863
K H+ F+PT+ QQQ + T+LNGDF V YDVNR + + + YF H FAP+NL
Sbjct: 210 KAHIRFKPTLSQQQKSQSEQDTVLNGDFIVRYDVNRSDSGGSIQIEEGYFVHHFAPENLP 269
Query: 864 KLNKNVVFVIDISSSMEGQKVKQTKKALLKILSDLKPGDYFHL 992
++KNV+FVID S SM G+K++QT++AL+KIL DL P D F+L
Sbjct: 270 TMSKNVIFVIDKSGSMSGKKIQQTREALVKILKDLSPQDQFNL 312
>ref|NP_061216.2| inter alpha-trypsin inhibitor, heavy chain 4 isoform 1 [Mus
musculus].
Length = 942
Score = 268 bits (686), Expect = 4e-72
Identities = 134/283 (47%), Positives = 200/283 (70%), Gaps = 1/283 (0%)
Frame = +3
Query: 147 NGVVIRSLKVNCKVTSRFAHYVVTSQVVNNANKAKEVAFDVEIPKTAFISDFAITADENT 326
NG+ I SL V+ +V+SRFAH VVTS+VVN A+ +E F VE+P+ AFI++F++ D T
Sbjct: 31 NGIDIYSLTVDSRVSSRFAHTVVTSRVVNRADAVQEATFQVELPRKAFITNFSMIIDGVT 90
Query: 327 FVGDIKDKVTAWKQYRKAAISGENSGLVRASGRTMEQFAIHVTIGPRSKATFQLTYEEVL 506
+ G +K+K A KQY A GE++G+V+ +GR E+F + V + P SK TF+L Y+E+L
Sbjct: 91 YPGVVKEKAEAQKQYSAAVGRGESAGIVKTTGRQTEKFEVSVNVAPGSKITFELIYQELL 150
Query: 507 RRKLTQYDIVIKVKPKQLVQHFEIDVDIFEPQGISKLDAQASFLSKEAAAQLIKKSFSGK 686
+R+L Y++++KV+P+QLV+H ++D+ IFEPQGIS L+ +++F++ E A + S +
Sbjct: 151 QRRLGMYELLLKVRPQQLVKHLQMDIYIFEPQGISILETESTFMTPE-LANALTTSQNKT 209
Query: 687 KGHVLFRPTVGQQQSCPTCSTTLLNGDFKVTYDVNR-EKLCDLLVANNYFAHFFAPQNLT 863
K H+ F+PT+ QQQ + T+LNGDF V YDVNR + + + YF H FAP+NL
Sbjct: 210 KAHIRFKPTLSQQQKSQSEQDTVLNGDFIVRYDVNRSDSGGSIQIEEGYFVHHFAPENLP 269
Query: 864 KLNKNVVFVIDISSSMEGQKVKQTKKALLKILSDLKPGDYFHL 992
++KNV+FVID S SM G+K++QT++AL+KIL DL P D F+L
Sbjct: 270 TMSKNVIFVIDKSGSMSGKKIQQTREALVKILKDLSPQDQFNL 312
>ref|NP_034712.2| inter-alpha-trypsin inhibitor heavy chain H2 [Mus musculus].
Length = 950
Score = 226 bits (576), Expect = 2e-59
Identities = 126/292 (43%), Positives = 174/292 (59%), Gaps = 1/292 (0%)
Frame = +3
Query: 114 PTDSTKGNKAVNGVVIRSLKVNCKVTSRFAHYVVTSQVVNNANKAKEVAFDVEIPKTAFI 293
P +S + V+ V + S KV +TSR A + S++VNN+ + V FDV+IPK AFI
Sbjct: 61 PEESGEETDTVDPVTLYSYKVQSTITSRVATTTIQSKLVNNSPLPQSVVFDVQIPKGAFI 120
Query: 294 SDFAITADENTFVGDIKDKVTAWKQYRKAAISGENSGLVRASGRTMEQFAIHVTIGPRSK 473
S+F +T + TF IK+K Y +A G+ +G VR+ ME F V I P +K
Sbjct: 121 SNFTMTVNGMTFTSSIKEKTVGRALYSQARAKGKTAGWVRSRTLDMENFNTEVNIPPGAK 180
Query: 474 ATFQLTYEEVLRRKLTQYDIVIKVKPKQLVQHFEIDVDIFEPQGISKLDAQASFLSKEAA 653
F+L Y+EV RKL Y+ I ++P +L +H E++V I EPQG+ L +F
Sbjct: 181 VQFELHYQEVKWRKLGSYEHKIHLQPGKLAKHLEVNVWIIEPQGMRFLHVPDTFEGHFQG 240
Query: 654 AQLIKKSFSGKKGHVLFRPTVGQQQSCPTCSTTLLNGDFKVTYDVNR-EKLCDLLVANNY 830
+I K +K HV F+PTV QQ+ CP C+ T +NG+ V YDVNR EK +L V N Y
Sbjct: 241 VPVISK--GQQKAHVSFKPTVAQQRKCPNCTETAVNGELVVMYDVNREEKAGELEVFNGY 298
Query: 831 FAHFFAPQNLTKLNKNVVFVIDISSSMEGQKVKQTKKALLKILSDLKPGDYF 986
F HFFAP+NL + KN++FVID+S SM G K+KQT +A+ IL DL+ D F
Sbjct: 299 FVHFFAPENLDPIPKNILFVIDVSGSMWGIKMKQTVEAMKTILDDLRTDDQF 350
>ref|XP_003085348.1| PREDICTED: LOW QUALITY PROTEIN: inter-alpha (globulin) inhibitor
H5-like, pseudogene [Mus musculus].
Length = 1321
Score = 178 bits (451), Expect = 7e-45
Identities = 109/305 (35%), Positives = 172/305 (56%), Gaps = 10/305 (3%)
Frame = +3
Query: 108 GSPTDSTKGNKAVNGVVIRSLKVNCKVTSRFAHYVVTSQVVNNANKAKEVAFDVEIPKTA 287
GS + S+K +++ S + V SR+A+ +VTS + N ++A E FD+ +P+ A
Sbjct: 27 GSASSSSK-------LLMMSYSIRSTVVSRYANTLVTSVLFNPHDEAHEAIFDLNLPRIA 79
Query: 288 FISDFAITADENTFVGDIKDKVTAWKQYRKAAISGENSGLVRASGRTMEQFAIHVTIGPR 467
FIS+F +T D+ +V +IK+K A K Y KA G+ + V R E F I +
Sbjct: 80 FISNFTMTIDDKIYVAEIKEKHQAKKMYEKAYQQGKTAAHVGIRDRESENFRISTMLAAG 139
Query: 468 SKATFQLTYEEVLRRKLTQYDIVIKVKPKQLVQHFEIDVDIFEPQGIS-----KLDAQAS 632
+KATF L YEE+L+R +Y +V+ ++P QLV+ +++ + E GI+ L
Sbjct: 140 TKATFALAYEELLQRHQGRYQLVVGLRPGQLVRKLNVEITVSERTGIAYVHIPPLRTSQV 199
Query: 633 FLSKEAAAQLIKKSFSGKKG----HVLFRPTVGQQQSCPTCSTTLLNGDFKVTYDVNREK 800
+ + + + S ++G H+ F PT+ Q + S++ + DF + YDV+ E
Sbjct: 200 CTNNQTSEGDLPPSTRIQRGETCVHITFSPTLRDQSA---FSSSGIMADFTIHYDVSMED 256
Query: 801 LC-DLLVANNYFAHFFAPQNLTKLNKNVVFVIDISSSMEGQKVKQTKKALLKILSDLKPG 977
+ D+ V YF H+FAP+ L L KNVVFVID+S SM G K++QTKKA+ ILSDL+
Sbjct: 257 IIGDVQVYGGYFIHYFAPRGLQPLEKNVVFVIDVSGSMFGTKLQQTKKAMDTILSDLQAS 316
Query: 978 DYFHL 992
D F++
Sbjct: 317 DSFNI 321
>ref|XP_003086909.1| PREDICTED: LOW QUALITY PROTEIN: inter-alpha (globulin) inhibitor
H5-like, pseudogene [Mus musculus].
Length = 1321
Score = 178 bits (451), Expect = 7e-45
Identities = 109/305 (35%), Positives = 172/305 (56%), Gaps = 10/305 (3%)
Frame = +3
Query: 108 GSPTDSTKGNKAVNGVVIRSLKVNCKVTSRFAHYVVTSQVVNNANKAKEVAFDVEIPKTA 287
GS + S+K +++ S + V SR+A+ +VTS + N ++A E FD+ +P+ A
Sbjct: 27 GSASSSSK-------LLMMSYSIRSTVVSRYANTLVTSVLFNPHDEAHEAIFDLNLPRIA 79
Query: 288 FISDFAITADENTFVGDIKDKVTAWKQYRKAAISGENSGLVRASGRTMEQFAIHVTIGPR 467
FIS+F +T D+ +V +IK+K A K Y KA G+ + V R E F I +
Sbjct: 80 FISNFTMTIDDKIYVAEIKEKHQAKKMYEKAYQQGKTAAHVGIRDRESENFRISTMLAAG 139
Query: 468 SKATFQLTYEEVLRRKLTQYDIVIKVKPKQLVQHFEIDVDIFEPQGIS-----KLDAQAS 632
+KATF L YEE+L+R +Y +V+ ++P QLV+ +++ + E GI+ L
Sbjct: 140 TKATFALAYEELLQRHQGRYQLVVGLRPGQLVRKLNVEITVSERTGIAYVHIPPLRTSQV 199
Query: 633 FLSKEAAAQLIKKSFSGKKG----HVLFRPTVGQQQSCPTCSTTLLNGDFKVTYDVNREK 800
+ + + + S ++G H+ F PT+ Q + S++ + DF + YDV+ E
Sbjct: 200 CTNNQTSEGDLPPSTRIQRGETCVHITFSPTLRDQSA---FSSSGIMADFTIHYDVSMED 256
Query: 801 LC-DLLVANNYFAHFFAPQNLTKLNKNVVFVIDISSSMEGQKVKQTKKALLKILSDLKPG 977
+ D+ V YF H+FAP+ L L KNVVFVID+S SM G K++QTKKA+ ILSDL+
Sbjct: 257 IIGDVQVYGGYFIHYFAPRGLQPLEKNVVFVIDVSGSMFGTKLQQTKKAMDTILSDLQAS 316
Query: 978 DYFHL 992
D F++
Sbjct: 317 DSFNI 321
>ref|NP_766059.1| inter-alpha-trypsin inhibitor heavy chain H5 precursor [Mus
musculus].
Length = 952
Score = 165 bits (417), Expect = 6e-41
Identities = 106/298 (35%), Positives = 174/298 (58%), Gaps = 19/298 (6%)
Frame = +3
Query: 156 VIRSLKVNCKVTSRFAHYVVTSQVVNNANKAKEVAFDVEIPKTAFISDFAITADENTFVG 335
++ V + SR+A V+ +++N A++ +E F ++IP++AFI++F + ++ + G
Sbjct: 50 LMAEFSVKSTIISRYAFTTVSCRMLNRASEDQEAEFQMQIPESAFITNFTMLIGDSVYRG 109
Query: 336 DI--KDKVTAW----KQYRKAAISGENSGLVRASGRTMEQFAIHVTIGPRSKATFQLTYE 497
+I KDK ++ K+ R + + EN + F + I + KA F L+YE
Sbjct: 110 EITQKDKKSSESVKDKRNRTSDDNEENGS---------DMFKASLVIPSKDKAAFFLSYE 160
Query: 498 EVLRRKLTQYDIVIKVKPKQLVQHFEIDVDIFEPQGISKLDAQASFLSKEAAA------- 656
E+L+R+L +Y+ I V+P+QLV ++VDI E GI+ L+ S++ +
Sbjct: 161 ELLQRRLGKYEHSISVRPQQLVGRLTVEVDILERSGITSLEVLPLHNSRKKGSGKAEGDV 220
Query: 657 -----QLIKKSFSGKKGHVLFRPTVGQQQSCPTCSTTLLNGDFKVTYDVNREK-LCDLLV 818
LI ++ + K V+F+PTV QQ + + GDF V YDV RE+ + D+ V
Sbjct: 221 GPPPSTLINQNETFAK--VIFKPTVVQQAKI---AQNGILGDFIVRYDVEREQNIGDIQV 275
Query: 819 ANNYFAHFFAPQNLTKLNKNVVFVIDISSSMEGQKVKQTKKALLKILSDLKPGDYFHL 992
N YF H+FAP+NL L KNVVFV+DIS+SM G K++QT++AL+ IL+DL+P D F++
Sbjct: 276 LNGYFVHYFAPKNLPPLPKNVVFVLDISASMVGAKLQQTREALVTILNDLRPQDRFNI 333
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 32,699,845
Number of extensions: 883184
Number of successful extensions: 3506
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 3484
Number of HSP's successfully gapped: 8
Length of query: 331
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 229
Effective length of database: 12,553,887
Effective search space: 2874840123
Effective search space used: 2874840123
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002998
(994 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_999089.1| inter-alpha-trypsin inhibitor heavy chain H1 pr... 582 e-167
Alignment gi|NP_001193278.1| inter-alpha-trypsin inhibitor heavy chain H3... 337 8e-93
Alignment gi|NP_001001537.1| inter-alpha-trypsin inhibitor heavy chain H4... 261 6e-70
Alignment gi|NP_999068.1| inter-alpha-trypsin inhibitor heavy chain H2 pr... 228 5e-60
Alignment gi|XP_003130868.1| PREDICTED: inter-alpha-trypsin inhibitor hea... 166 2e-41
>ref|NP_999089.1| inter-alpha-trypsin inhibitor heavy chain H1 precursor [Sus
scrofa].
Length = 902
Score = 582 bits (1501), Expect = e-167
Identities = 299/322 (92%), Positives = 300/322 (93%)
Frame = +3
Query: 27 MDGTMXXXXXXXXXXXXXXXXXAMPTQGSPTDSTKGNKAVNGVVIRSLKVNCKVTSRFAH 206
MDGTM AMPTQGSPTDSTKGNKAVNGVVIRSLKVNCKVTSRFAH
Sbjct: 1 MDGTMGLQGLLCLCLASHLALQAMPTQGSPTDSTKGNKAVNGVVIRSLKVNCKVTSRFAH 60
Query: 207 YVVTSQVVNNANKAKEVAFDVEIPKTAFISDFAITADENTFVGDIKDKVTAWKQYRKAAI 386
YVVTSQVVNN NK KEVAFDVEIPKTAFISDFAITADENTFVGDIKDKVTAWKQYRKAAI
Sbjct: 61 YVVTSQVVNNTNKPKEVAFDVEIPKTAFISDFAITADENTFVGDIKDKVTAWKQYRKAAI 120
Query: 387 SGENSGLVRASGRTMEQFAIHVTIGPRSKATFQLTYEEVLRRKLTQYDIVIKVKPKQLVQ 566
SGENSGLVRASGRTMEQF IHVTIGPRSKATFQLTYEEVLRRKLTQYDIVIKVKPKQLVQ
Sbjct: 121 SGENSGLVRASGRTMEQFTIHVTIGPRSKATFQLTYEEVLRRKLTQYDIVIKVKPKQLVQ 180
Query: 567 HFEIDVDIFEPQGISKLDAQASFLSKEAAAQLIKKSFSGKKGHVLFRPTVGQQQSCPTCS 746
HFEIDVDIFEPQGISKLDAQASFLSKEAAAQLIKKSFSGKKGHVLFRPTVGQQQSC TCS
Sbjct: 181 HFEIDVDIFEPQGISKLDAQASFLSKEAAAQLIKKSFSGKKGHVLFRPTVGQQQSCSTCS 240
Query: 747 TTLLNGDFKVTYDVNREKLCDLLVANNYFAHFFAPQNLTKLNKNVVFVIDISSSMEGQKV 926
TTLLNGDFKVTYDVNREKLCDLLVANNYFAHFFAPQNLTKLNKNVVFVIDISSSMEGQKV
Sbjct: 241 TTLLNGDFKVTYDVNREKLCDLLVANNYFAHFFAPQNLTKLNKNVVFVIDISSSMEGQKV 300
Query: 927 KQTKKALLKILSDLKPGDYFHL 992
KQTK+ALLKILSDLKPGDYF L
Sbjct: 301 KQTKEALLKILSDLKPGDYFDL 322
>ref|NP_001193278.1| inter-alpha-trypsin inhibitor heavy chain H3 [Sus scrofa].
Length = 889
Score = 337 bits (863), Expect = 8e-93
Identities = 161/282 (57%), Positives = 217/282 (76%)
Frame = +3
Query: 144 VNGVVIRSLKVNCKVTSRFAHYVVTSQVVNNANKAKEVAFDVEIPKTAFISDFAITADEN 323
VNG+ + S KV+CKV+SRFAH VVT++ VN+A+ AKEV+FDVE+PKTAFI++F +T D
Sbjct: 40 VNGIEVYSTKVSCKVSSRFAHNVVTTRAVNHADTAKEVSFDVELPKTAFITNFTLTIDGV 99
Query: 324 TFVGDIKDKVTAWKQYRKAAISGENSGLVRASGRTMEQFAIHVTIGPRSKATFQLTYEEV 503
T+ G++K+K A KQY KA + +GLV+ASGR +E+F + V + SK TF+LTYEE+
Sbjct: 100 TYPGNVKEKEVAKKQYEKAVSQDKTAGLVKASGRKLEKFTVSVNVAAGSKVTFELTYEEL 159
Query: 504 LRRKLTQYDIVIKVKPKQLVQHFEIDVDIFEPQGISKLDAQASFLSKEAAAQLIKKSFSG 683
L+R +Y++ +KV+PKQLV+HFEI DIFEPQGIS LDA+ASF++ + + KSFSG
Sbjct: 160 LKRHKGKYEMYLKVQPKQLVKHFEITADIFEPQGISTLDAEASFITNDLLGSALTKSFSG 219
Query: 684 KKGHVLFRPTVGQQQSCPTCSTTLLNGDFKVTYDVNREKLCDLLVANNYFAHFFAPQNLT 863
KKGHV F+P++ QQ+SCPTC+ +LL GDF +TYDVNRE ++ + N YF HFFAPQ L
Sbjct: 220 KKGHVSFKPSLDQQRSCPTCTDSLLKGDFIITYDVNRESPANVQIVNGYFVHFFAPQGLP 279
Query: 864 KLNKNVVFVIDISSSMEGQKVKQTKKALLKILSDLKPGDYFH 989
+ KNVVFVID+S SM G+K++QT+ ALLKIL D+K DY +
Sbjct: 280 VVPKNVVFVIDVSGSMYGRKMEQTRDALLKILDDIKEDDYLN 321
>ref|NP_001001537.1| inter-alpha-trypsin inhibitor heavy chain H4 [Sus scrofa].
Length = 921
Score = 261 bits (666), Expect = 6e-70
Identities = 136/291 (46%), Positives = 202/291 (69%), Gaps = 1/291 (0%)
Frame = +3
Query: 123 STKGNKAVNGVVIRSLKVNCKVTSRFAHYVVTSQVVNNANKAKEVAFDVEIPKTAFISDF 302
ST +K N + I SL V+ KV+SRFAH VVTS+VVN + +E F +E+PK AFI++F
Sbjct: 24 STTAHK--NDINIYSLTVDSKVSSRFAHTVVTSRVVNKGSAVQEATFQMELPKKAFITNF 81
Query: 303 AITADENTFVGDIKDKVTAWKQYRKAAISGENSGLVRASGRTMEQFAIHVTIGPRSKATF 482
++ D T+ G+IK+K A +QY A GE++GLVRA+GR EQF + V++ P +K TF
Sbjct: 82 SMIIDGVTYPGNIKEKAAAQEQY-SAVARGESAGLVRATGRKTEQFQVAVSVAPAAKVTF 140
Query: 483 QLTYEEVLRRKLTQYDIVIKVKPKQLVQHFEIDVDIFEPQGISKLDAQASFLSKEAAAQL 662
+L YEE+L R L Y++++K++P+QLV+H ++D+ IFEPQGIS L+ +++F++ E A+
Sbjct: 141 ELVYEELLARHLGVYELLLKIQPQQLVKHLQMDIHIFEPQGISFLETESTFMTNE-LAEA 199
Query: 663 IKKSFSGKKGHVLFRPTVGQQQSCPTCSTTLLNGDFKVTYDVNREKL-CDLLVANNYFAH 839
+ S + K H+ F+PT+ QQQ P T+L+G+F V YDVNR + + N YF H
Sbjct: 200 LTISQNKTKAHIRFKPTLSQQQKSPEQQETVLDGNFIVRYDVNRTVTGGSIQIENGYFVH 259
Query: 840 FFAPQNLTKLNKNVVFVIDISSSMEGQKVKQTKKALLKILSDLKPGDYFHL 992
+FAP+ + + KNV+FVID S SM G+K++QT++AL+KIL DL D F+L
Sbjct: 260 YFAPEVWSAIPKNVIFVIDTSGSMRGRKIQQTREALIKILGDLGSRDQFNL 310
>ref|NP_999068.1| inter-alpha-trypsin inhibitor heavy chain H2 precursor [Sus
scrofa].
Length = 935
Score = 228 bits (580), Expect = 5e-60
Identities = 121/289 (41%), Positives = 178/289 (61%), Gaps = 1/289 (0%)
Frame = +3
Query: 129 KGNKAVNGVVIRSLKVNCKVTSRFAHYVVTSQVVNNANKAKEVAFDVEIPKTAFISDFAI 308
+ + V+ V + S KV +TSR A+ V+ ++VVN++ + ++V FD++IPK AFIS+F++
Sbjct: 51 RSQEGVDQVTLYSYKVQSTITSRMANTVIQTKVVNHSPEPQDVVFDIQIPKGAFISNFSM 110
Query: 309 TADENTFVGDIKDKVTAWKQYRKAAISGENSGLVRASGRTMEQFAIHVTIGPRSKATFQL 488
T D F IK+K Y +A G+ +GLVR+ ME F V I P +K F+L
Sbjct: 111 TVDGTKFTSSIKEKTVGRALYWQARAKGKTAGLVRSRALDMENFKTEVNIAPGAKVQFEL 170
Query: 489 TYEEVLRRKLTQYDIVIKVKPKQLVQHFEIDVDIFEPQGISKLDAQASFLSKEAAAQLIK 668
Y+EV R L Y+ I ++P +L +H E+DV I EPQG+ L +F ++
Sbjct: 171 HYQEVKWRNLGSYEHRIHLQPGRLAKHLEVDVQIIEPQGLRFLHVLDTFDGHFDGVPVVV 230
Query: 669 KSFSGKKGHVLFRPTVGQQQSCPTCSTTLLNGDFKVTYDVNRE-KLCDLLVANNYFAHFF 845
K +K HV F+PTV QQ+ CP+CS T ++G+ V YDVNRE K +L + N YF HFF
Sbjct: 231 K--GQQKAHVAFKPTVAQQRKCPSCSETAVDGELVVMYDVNREQKAGELQLFNGYFVHFF 288
Query: 846 APQNLTKLNKNVVFVIDISSSMEGQKVKQTKKALLKILSDLKPGDYFHL 992
AP+++ + KN++FVID+S SM G K+KQT +A+ IL DL+ D F L
Sbjct: 289 APESMDPIPKNILFVIDVSGSMWGIKMKQTVEAMKTILDDLRAEDQFSL 337
>ref|XP_003130868.1| PREDICTED: inter-alpha-trypsin inhibitor heavy chain H5-like [Sus
scrofa].
Length = 944
Score = 166 bits (419), Expect = 2e-41
Identities = 104/298 (34%), Positives = 168/298 (56%), Gaps = 19/298 (6%)
Frame = +3
Query: 156 VIRSLKVNCKVTSRFAHYVVTSQVVNNANKAKEVAFDVEIPKTAFISDFAITADENTFVG 335
++ V + SR+A V+ +++N A+K +EV F ++IP AFI++F + + G
Sbjct: 50 LMTEFSVKSTIISRYAFTTVSCRMLNRASKDQEVTFQMQIPAAAFITNFTMLIGNQVYQG 109
Query: 336 DI--KDKVTAWKQYRKAAISGENSGLVRASGRTMEQFAIHVTIGPRSKATFQLTYEEVLR 509
+I +D+ + K + E++G + E F V + + KA F L+YEE+L+
Sbjct: 110 EITERDEKPGGQVKEKRNKTAEDNG-----EKGTEMFRASVVLPSKDKAAFFLSYEELLQ 164
Query: 510 RKLTQYDIVIKVKPKQLVQHFEIDVDIFEPQGISKLDAQASFLSKEAAAQLIKKSFSGKK 689
R+L +Y+ V+ V+P+QLV ++V++ E GI++L+ S+ K S SG+
Sbjct: 165 RRLGKYEHVVSVRPQQLVGRLTVEVNVLERSGIAELEVLRLQNSRR------KGSGSGED 218
Query: 690 ----------------GHVLFRPTVGQQQSCPTCSTTLLNGDFKVTYDVNREK-LCDLLV 818
HV+F+P+V QQ + + GDF V YDV+RE+ + D+ V
Sbjct: 219 DSGPPPSTVIHHNETFAHVVFKPSVVQQAKI---AQNGILGDFIVRYDVSREQSIGDIQV 275
Query: 819 ANNYFAHFFAPQNLTKLNKNVVFVIDISSSMEGQKVKQTKKALLKILSDLKPGDYFHL 992
N YF H+FAP++L L KNVVFV+D S+SM G K++QTK AL IL DL+P D+F++
Sbjct: 276 LNGYFVHYFAPRDLPPLPKNVVFVLDSSASMVGAKLRQTKDALFTILHDLRPQDHFNI 333
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 24,183,904
Number of extensions: 660358
Number of successful extensions: 2717
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 2695
Number of HSP's successfully gapped: 5
Length of query: 331
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 232
Effective length of database: 8,879,129
Effective search space: 2059957928
Effective search space used: 2059957928
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002998
(994 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr13 319 2e-84
>Sscrofa_Chr13
|| Length = 218635234
Score = 319 bits (161), Expect = 2e-84
Identities = 167/169 (98%)
Strand = Plus / Plus
Query: 139 aggccgtcaatggtgtggtcattcggagtttgaaagtcaactgcaaggtcacctctcgct 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38089095 aggccgtcaatggtgtggtcattcggagtttgaaagtcaactgcaaggtcacctctcgct 38089154
Query: 199 tcgcccactacgttgtcaccagccaagtggtcaacaatgccaacaaagccaaggaagtgg 258
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 38089155 tcgcccactacgtcgtcaccagccaagtggtcaacaacgccaacaaagccaaggaagtgg 38089214
Query: 259 ccttcgatgtggaaatccccaagacagccttcatcagcgactttgccat 307
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38089215 ccttcgatgtggaaatccccaagacagccttcatcagcgactttgccat 38089263
Score = 280 bits (141), Expect = 1e-72
Identities = 141/141 (100%)
Strand = Plus / Plus
Query: 1 gataaggcagcaagaggcttgagtccatggacggcaccatggggctgcaggggctgctct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38088433 gataaggcagcaagaggcttgagtccatggacggcaccatggggctgcaggggctgctct 38088492
Query: 61 gcctgtgcctggcgtcccacctcgccctgcaggccatgcccactcaaggttcacccacag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38088493 gcctgtgcctggcgtcccacctcgccctgcaggccatgcccactcaaggttcacccacag 38088552
Query: 121 acagtaccaaaggcaacaagg 141
|||||||||||||||||||||
Sbjct: 38088553 acagtaccaaaggcaacaagg 38088573
Score = 250 bits (126), Expect = 1e-63
Identities = 129/130 (99%)
Strand = Plus / Plus
Query: 688 agggtcatgtgcttttccgccccacggtgggccagcaacaatcctgccccacatgctcta 747
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 38091884 agggtcatgtgcttttccgccccacggtgggccagcaacaatcctgctccacatgctcta 38091943
Query: 748 cgactctgctgaacggggacttcaaggtgacctacgatgtcaatcgggagaagctctgtg 807
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38091944 cgactctgctgaacggggacttcaaggtgacctacgatgtcaatcgggagaagctctgtg 38092003
Query: 808 acctcctggt 817
||||||||||
Sbjct: 38092004 acctcctggt 38092013
Score = 234 bits (118), Expect = 7e-59
Identities = 118/118 (100%)
Strand = Plus / Plus
Query: 815 ggtcgccaacaactactttgcccacttctttgccccccaaaacctgacaaaactgaataa 874
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38092095 ggtcgccaacaactactttgcccacttctttgccccccaaaacctgacaaaactgaataa 38092154
Query: 875 gaacgtggtttttgtgattgacattagttcctccatggaaggccagaaagtgaagcag 932
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38092155 gaacgtggtttttgtgattgacattagttcctccatggaaggccagaaagtgaagcag 38092212
Score = 210 bits (106), Expect = 1e-51
Identities = 106/106 (100%)
Strand = Plus / Plus
Query: 308 cacagcagatgaaaacacatttgtgggggacataaaggacaaagtgactgcatggaagca 367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38089651 cacagcagatgaaaacacatttgtgggggacataaaggacaaagtgactgcatggaagca 38089710
Query: 368 gtaccggaaagcagccatttcaggagagaattctggcctcgtcagg 413
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38089711 gtaccggaaagcagccatttcaggagagaattctggcctcgtcagg 38089756
Score = 105 bits (53), Expect = 5e-20
Identities = 62/65 (95%)
Strand = Plus / Plus
Query: 930 cagaccaaaaaggcgcttttaaaaatcttgagtgatttgaagccaggggactacttccac 989
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct: 38092593 cagaccaaagaggcgcttttaaaaatcctgagtgatttgaagccaggggactacttcgac 38092652
Query: 990 ctggt 994
|||||
Sbjct: 38092653 ctggt 38092657
Score = 67.9 bits (34), Expect = 1e-08
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 657 caactcatcaagaagtccttctcagggaaaaagg 690
||||||||||||||||||||||||||||||||||
Sbjct: 38089992 caactcatcaagaagtccttctcagggaaaaagg 38090025
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 28,830,649
Number of extensions: 191
Number of successful extensions: 191
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 191
Number of HSP's successfully gapped: 7
Length of query: 994
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 973
Effective length of database: 2,808,413,156
Effective search space: 2732586000788
Effective search space used: 2732586000788
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)