Animal-Genome cDNA 20110601C-003007


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-003007
         (1419 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001033280.2| RIB43A-like with coiled-coils protein 2 [Bos...   504   e-148
Alignment   gi|NP_001069053.1| RIB43A-like with coiled-coils protein 1 [Bos...   156   1e-41

>ref|NP_001033280.2| RIB43A-like with coiled-coils protein 2 [Bos taurus].
          Length = 377

 Score =  504 bits (1297), Expect(2) = e-148
 Identities = 259/353 (73%), Positives = 279/353 (79%)
 Frame = +1

Query: 208  MEVAQPKDLEEDFGQAKKRHAELCRQKRIFNARNRIFGGDIDAWNVQVCDQKIREATEKA 387
            MEVAQPKDL+EDF  AK+RHAEL RQKRIFNARNRI GGD  AW+ QVCDQ I+ ATEKA
Sbjct: 1    MEVAQPKDLKEDFVLAKRRHAELVRQKRIFNARNRIIGGDTTAWDAQVCDQNIKAATEKA 60

Query: 388  RQETFAAEMRQNDKITCILEDRARRDRKNLCKAINDFQQSFQKPETRREFDLSDPLALKK 567
            R E FAAEMRQNDKI C+ E+R RRDRKNLCKAINDFQQSFQ+PETRREFDLSDPLALKK
Sbjct: 61   RDEAFAAEMRQNDKIACLSENRERRDRKNLCKAINDFQQSFQRPETRREFDLSDPLALKK 120

Query: 568  DLPARQSDNDARNTVSGMQKFMGEDLNIHQRRKFQEEQNREWSLQQQREWKIAREDQKHA 747
            D PARQSD DARNT+SGMQKFMGEDLN H R+KFQEEQNREWSLQQQ+E  I RE+QK A
Sbjct: 121  DRPARQSDYDARNTISGMQKFMGEDLNFHLRKKFQEEQNREWSLQQQKEQMIGRENQKCA 180

Query: 748  EDLYLETRLQFDETAKHLQNLEGTTRKAVCAAVKEFNKNQALESAXXXXXXXXXXXXDNL 927
            EDLYL+TRLQFDETAKHLQNLE  TRKAVCA VKEFNKNQALESA            DNL
Sbjct: 181  EDLYLKTRLQFDETAKHLQNLETATRKAVCATVKEFNKNQALESAEKKIQERKQEQEDNL 240

Query: 928  AEITNLLRGDLLSEDPQQAASSFGPHRVVPDRWKGMTQEQLEQIXXXXXXXXXXXXXXXX 1107
            AEI+N+LRGDLLSE+PQQAASSFGPHRVVPDRWKGM+QEQLE+I                
Sbjct: 241  AEISNMLRGDLLSENPQQAASSFGPHRVVPDRWKGMSQEQLEEIRLVQRQQVQEKLRLQE 300

Query: 1108 XXXXXDMDWDRQRVQKARATLLSEXXXXXXXXXXXXXXDGSNLSLAKEQLLQK 1266
                 DMDWDR+R+QKARATLL E              D SNLSLA+EQLLQK
Sbjct: 301  EERQRDMDWDRRRIQKARATLLFEQQQQRLQRGLRRALDCSNLSLAREQLLQK 353



 Score = 41.6 bits (96), Expect(2) = e-148
 Identities = 18/25 (72%), Positives = 21/25 (84%)
 Frame = +3

Query: 1263 EKYMKEIYTNQPTEDYFTQFNTRSR 1337
            +K+MKE+ TN  TEDYFTQFNT SR
Sbjct: 353  KKHMKELCTNHATEDYFTQFNTGSR 377


>ref|NP_001069053.1| RIB43A-like with coiled-coils protein 1 [Bos taurus].
          Length = 379

 Score =  156 bits (395), Expect(2) = 1e-41
 Identities = 110/354 (31%), Positives = 165/354 (46%), Gaps = 1/354 (0%)
 Frame = +1

Query: 211  EVAQPKDLEEDFGQAKKRHAELCRQKRIFNARNRIFGGDIDAWNVQVCDQKIREATEKAR 390
            +V  P D +E      +R+ E  +Q R FN R R+ G D++A N QV ++K++EATE+++
Sbjct: 3    QVDLPPDPKEVAAIEARRNQEREQQSRFFNVRTRVMGVDVEALNNQVEERKLQEATERSK 62

Query: 391  QETFAAEMRQNDKITCILEDRARRDRKNLCKAINDFQQSFQKPETRREFDLSDPLALKKD 570
            +  +     + D +  +LE       + L K + +F++  QK   R E D  +   L ++
Sbjct: 63   EAAYGTNQVRYDLVAQMLEKEQAERTRRLAKKVQNFREQRQKLRNRCELDFWNSNQLWRE 122

Query: 571  LPARQSDNDARNTVSGMQKFMGEDLNIHQRRKFQEEQNREWSLQQQ-REWKIAREDQKHA 747
             PA   DN      + +Q F GEDL      + Q+EQ  ++SL++Q +E + AR D+  A
Sbjct: 123  FPAYLGDNAPYYGQASLQCFSGEDLERATYLRMQQEQF-QYSLERQLQEQQQARVDENCA 181

Query: 748  EDLYLETRLQFDETAKHLQNLEGTTRKAVCAAVKEFNKNQALESAXXXXXXXXXXXXDNL 927
            + L  + RL  D  A  L  LE + R A+ AA    NK QA++ A             NL
Sbjct: 182  DMLNDQLRLAMDMRAAQLAKLEESCRIAMMAATASANKAQAVKLAEQQGQEHQRQQEANL 241

Query: 928  AEITNLLRGDLLSEDPQQAASSFGPHRVVPDRWKGMTQEQLEQIXXXXXXXXXXXXXXXX 1107
             E+ N +  DLL+E+PQ A +   PHRV+P  WKGMT EQ   I                
Sbjct: 242  VEVQNQITSDLLTENPQVAQNPVAPHRVLPYCWKGMTPEQRATIRKVQETQHHEKEAQRQ 301

Query: 1108 XXXXXDMDWDRQRVQKARATLLSEXXXXXXXXXXXXXXDGSNLSLAKEQLLQKN 1269
                 D  W+ Q +  A+A    E                 N  LA EQ  Q+N
Sbjct: 302  AEQALDAKWESQAINLAQAAKELEEQERELCAEFRRGLGSFNQQLAMEQNAQQN 355



 Score = 32.7 bits (73), Expect(2) = 1e-41
 Identities = 14/19 (73%), Positives = 14/19 (73%)
 Frame = +3

Query: 1281 IYTNQPTEDYFTQFNTRSR 1337
            IYTNQPT  Y  QFNT SR
Sbjct: 361  IYTNQPTAQYHLQFNTSSR 379


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 50,189,991
Number of extensions: 1286794
Number of successful extensions: 6312
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 6173
Number of HSP's successfully gapped: 4
Length of query: 473
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 367
Effective length of database: 14,174,046
Effective search space: 5201874882
Effective search space used: 5201874882
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-003007
         (1419 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_531699.2| PREDICTED: similar to RIB43A domain with coiled...   388   e-108
Alignment   gi|XP_538050.2| PREDICTED: similar to RIB43A domain with coiled...   166   2e-44

>ref|XP_531699.2| PREDICTED: similar to RIB43A domain with coiled-coils 2 [Canis
            familiaris].
          Length = 284

 Score =  388 bits (996), Expect = e-108
 Identities = 200/284 (70%), Positives = 216/284 (76%)
 Frame = +1

Query: 412  MRQNDKITCILEDRARRDRKNLCKAINDFQQSFQKPETRREFDLSDPLALKKDLPARQSD 591
            MR NDKITCILE R RRD+++LCKAINDFQQSFQ+PETRREFDLSDPLALKKDLPARQSD
Sbjct: 1    MRHNDKITCILEGRERRDKRSLCKAINDFQQSFQRPETRREFDLSDPLALKKDLPARQSD 60

Query: 592  NDARNTVSGMQKFMGEDLNIHQRRKFQEEQNREWSLQQQREWKIAREDQKHAEDLYLETR 771
            ND RNT+SGMQKFMGEDLN  +R+KFQEEQNREWSLQQQREW+ AR  Q+ AEDLYL+TR
Sbjct: 61   NDIRNTISGMQKFMGEDLNFRERKKFQEEQNREWSLQQQREWEDARAHQRCAEDLYLKTR 120

Query: 772  LQFDETAKHLQNLEGTTRKAVCAAVKEFNKNQALESAXXXXXXXXXXXXDNLAEITNLLR 951
            LQFDETAKHLQNLE  TRKAVC AVKEFNK+QA ES             DN+AEI+NLL 
Sbjct: 121  LQFDETAKHLQNLESATRKAVCVAVKEFNKSQATESLERKIQEKKQEQEDNVAEISNLLH 180

Query: 952  GDLLSEDPQQAASSFGPHRVVPDRWKGMTQEQLEQIXXXXXXXXXXXXXXXXXXXXXDMD 1131
            GDLLSE+PQQAASSFGPHRVVPDRWKGMTQEQLEQI                     DMD
Sbjct: 181  GDLLSENPQQAASSFGPHRVVPDRWKGMTQEQLEQIRLVQKQQIQEKLRLQEEERQRDMD 240

Query: 1132 WDRQRVQKARATLLSEXXXXXXXXXXXXXXDGSNLSLAKEQLLQ 1263
            WDR+RVQ ARA LL E              D +NLSLAKEQ LQ
Sbjct: 241  WDRRRVQMARAVLLLERQQRRQQRDLRRALDCNNLSLAKEQRLQ 284


>ref|XP_538050.2| PREDICTED: similar to RIB43A domain with coiled-coils 1 isoform 1
            [Canis familiaris].
          Length = 379

 Score =  166 bits (420), Expect(2) = 2e-44
 Identities = 110/340 (32%), Positives = 161/340 (47%), Gaps = 3/340 (0%)
 Frame = +1

Query: 259  KRHAELCRQKRIFNARNRIFGGDIDAWNVQVCDQKIREATEKARQETFAAEMRQNDKITC 438
            +R+ E  RQ R FN R R+ G D+ A N QV ++K+REATE++++  +     Q D +  
Sbjct: 19   RRNREKDRQSRFFNVRTRVMGVDVKALNSQVEERKLREATEQSKEAAYGTYQMQYDLVAQ 78

Query: 439  ILEDRARRDRKNLCKAINDFQQSFQKPETRREFDLSDPLALKKDLPARQSDNDARNTVSG 618
            +LE       + L + + +F++  Q+ + R+EFD  DP     + P R  D+D     + 
Sbjct: 79   MLEKEQAERTRRLARKVQEFREQKQQLKNRQEFDFWDPGRFCMEFPGRFGDSDPYYGPAS 138

Query: 619  MQKFMGEDLNIHQRRKFQEEQNR---EWSLQQQREWKIAREDQKHAEDLYLETRLQFDET 789
            +Q F GEDL+     K Q+EQ +   E  LQ+QR+ K+   D+K ++ L  + RL  D  
Sbjct: 139  LQCFAGEDLDRAACLKMQQEQFKYSLERQLQEQRQVKV---DEKCSDMLNDQLRLAMDMR 195

Query: 790  AKHLQNLEGTTRKAVCAAVKEFNKNQALESAXXXXXXXXXXXXDNLAEITNLLRGDLLSE 969
            A  L  LE + R A+ +A+   NK QA E A             N  EI N +  DLL+E
Sbjct: 196  ATQLAKLEESCRVAMMSAMANANKAQAAELAERQRREHQREQEANFMEIQNQITSDLLTE 255

Query: 970  DPQQAASSFGPHRVVPDRWKGMTQEQLEQIXXXXXXXXXXXXXXXXXXXXXDMDWDRQRV 1149
            +PQ A     PHRV+P  WKGMT EQ   I                     D+ W+ Q +
Sbjct: 256  NPQVAQHPVAPHRVLPYCWKGMTPEQRTAIRKVQEVQRHEKEAQRQAEQALDVKWENQAL 315

Query: 1150 QKARATLLSEXXXXXXXXXXXXXXDGSNLSLAKEQLLQKN 1269
              A+A +  E                 N  LA EQ  Q+N
Sbjct: 316  HSAQAAMELEEQERELCAEFRRGLGSFNQQLAMEQKAQQN 355



 Score = 32.7 bits (73), Expect(2) = 2e-44
 Identities = 14/19 (73%), Positives = 14/19 (73%)
 Frame = +3

Query: 1281 IYTNQPTEDYFTQFNTRSR 1337
            IYTNQPT  Y  QFNT SR
Sbjct: 361  IYTNQPTTQYHLQFNTSSR 379


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 52,242,889
Number of extensions: 1321847
Number of successful extensions: 6308
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 6179
Number of HSP's successfully gapped: 3
Length of query: 473
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 366
Effective length of database: 15,307,552
Effective search space: 5602564032
Effective search space used: 5602564032
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-003007
         (1419 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_056468.2| RIB43A-like with coiled-coils protein 2 [Homo s...   507   e-151
Alignment   gi|NP_001026915.1| RIB43A-like with coiled-coils protein 1 isof...   166   3e-44
Alignment   gi|NP_659405.1| RIB43A-like with coiled-coils protein 1 isoform...    96   6e-20

>ref|NP_056468.2| RIB43A-like with coiled-coils protein 2 [Homo sapiens].
          Length = 377

 Score =  507 bits (1305), Expect(2) = e-151
 Identities = 258/353 (73%), Positives = 280/353 (79%)
 Frame = +1

Query: 208  MEVAQPKDLEEDFGQAKKRHAELCRQKRIFNARNRIFGGDIDAWNVQVCDQKIREATEKA 387
            M VA P+DL +D   AK+RHAELCRQKR+FNARNRI GGD +AW+VQV DQKI+EATEKA
Sbjct: 1    MAVALPRDLRQDANLAKRRHAELCRQKRVFNARNRIIGGDTEAWDVQVHDQKIKEATEKA 60

Query: 388  RQETFAAEMRQNDKITCILEDRARRDRKNLCKAINDFQQSFQKPETRREFDLSDPLALKK 567
            R ETFAAEMRQNDKI CILE+R +RDRKNLC+AINDFQQSFQKPETRREFDLSDPLALKK
Sbjct: 61   RHETFAAEMRQNDKIMCILENRKKRDRKNLCRAINDFQQSFQKPETRREFDLSDPLALKK 120

Query: 568  DLPARQSDNDARNTVSGMQKFMGEDLNIHQRRKFQEEQNREWSLQQQREWKIAREDQKHA 747
            DLPARQSDND RNT+SGMQKFMGEDLN H+R+KFQEEQNREWSLQQQREWK AR +QK A
Sbjct: 121  DLPARQSDNDVRNTISGMQKFMGEDLNFHERKKFQEEQNREWSLQQQREWKNARAEQKCA 180

Query: 748  EDLYLETRLQFDETAKHLQNLEGTTRKAVCAAVKEFNKNQALESAXXXXXXXXXXXXDNL 927
            E LY ETRLQFDETAKHLQ LE TTRKAVCA+VK+FNK+QA+ES             DNL
Sbjct: 181  EALYTETRLQFDETAKHLQKLESTTRKAVCASVKDFNKSQAIESVERKKQEKKQEQEDNL 240

Query: 928  AEITNLLRGDLLSEDPQQAASSFGPHRVVPDRWKGMTQEQLEQIXXXXXXXXXXXXXXXX 1107
            AEITNLLRGDLLSE+PQQAASSFGPHRVVPDRWKGMTQEQLEQI                
Sbjct: 241  AEITNLLRGDLLSENPQQAASSFGPHRVVPDRWKGMTQEQLEQIRLVQKQQIQEKLRLQE 300

Query: 1108 XXXXXDMDWDRQRVQKARATLLSEXXXXXXXXXXXXXXDGSNLSLAKEQLLQK 1266
                 D+DWDR+R+Q ARATLL E              D SNLSLAKEQ LQK
Sbjct: 301  EKRQRDLDWDRRRIQGARATLLFERQQWRRQRDLRRALDSSNLSLAKEQHLQK 353



 Score = 47.8 bits (112), Expect(2) = e-151
 Identities = 20/25 (80%), Positives = 22/25 (88%)
 Frame = +3

Query: 1263 EKYMKEIYTNQPTEDYFTQFNTRSR 1337
            +KYM E+YTNQPT DYFTQFNT SR
Sbjct: 353  KKYMNEVYTNQPTGDYFTQFNTGSR 377


>ref|NP_001026915.1| RIB43A-like with coiled-coils protein 1 isoform 1 [Homo sapiens].
          Length = 379

 Score =  166 bits (419), Expect(2) = 3e-44
 Identities = 112/352 (31%), Positives = 162/352 (46%)
 Frame = +1

Query: 214  VAQPKDLEEDFGQAKKRHAELCRQKRIFNARNRIFGGDIDAWNVQVCDQKIREATEKARQ 393
            + Q  D +E      +R+ E  RQ R FN RNR+ G D+ A N QV D+K REA E++++
Sbjct: 4    IKQSTDTKEAAAIEARRNREKERQNRFFNVRNRVMGVDVQALNNQVGDRKRREAAERSKE 63

Query: 394  ETFAAEMRQNDKITCILEDRARRDRKNLCKAINDFQQSFQKPETRREFDLSDPLALKKDL 573
              +     Q D +  +LE       + L K + +F++  Q+ +  REF L DP  + K L
Sbjct: 64   AAYGTSQVQYDVVVQMLEKEEADRTRQLAKKVQEFREQKQQLKNGREFSLWDPGQVWKGL 123

Query: 574  PARQSDNDARNTVSGMQKFMGEDLNIHQRRKFQEEQNREWSLQQQREWKIAREDQKHAED 753
            P   S ++     + +Q F GEDL+   R + Q+ Q R    +QQ+E + A+ D+ + + 
Sbjct: 124  PTYLSYSNTYPGPASLQYFSGEDLDRDTRLRMQQGQFRYNLERQQQEQQQAKVDENYTDA 183

Query: 754  LYLETRLQFDETAKHLQNLEGTTRKAVCAAVKEFNKNQALESAXXXXXXXXXXXXDNLAE 933
            L  + RL  D  A HL  LE + R A+  A+   NK QA   A             NLAE
Sbjct: 184  LSNQLRLAMDAQATHLARLEESCRAAMMCAMANANKAQAAVQAGRQRCERQREQKANLAE 243

Query: 934  ITNLLRGDLLSEDPQQAASSFGPHRVVPDRWKGMTQEQLEQIXXXXXXXXXXXXXXXXXX 1113
            I +    DLL+E+PQ A     P+RV+P  WKGMT EQ   I                  
Sbjct: 244  IQHQSTSDLLTENPQVAQHPMAPYRVLPYCWKGMTPEQQAAIRKEQEVQRSKKQAHRQAE 303

Query: 1114 XXXDMDWDRQRVQKARATLLSEXXXXXXXXXXXXXXDGSNLSLAKEQLLQKN 1269
               D +W  Q +  A+A L  E                 N  LA EQ  Q++
Sbjct: 304  KTLDTEWKSQTMSSAQAVLELEEQERELCAVFQRGLGSFNQQLANEQKAQQD 355



 Score = 32.7 bits (73), Expect(2) = 3e-44
 Identities = 14/19 (73%), Positives = 14/19 (73%)
 Frame = +3

Query: 1281 IYTNQPTEDYFTQFNTRSR 1337
            IYTNQPT  Y  QFNT SR
Sbjct: 361  IYTNQPTAQYHQQFNTSSR 379


>ref|NP_659405.1| RIB43A-like with coiled-coils protein 1 isoform 2 [Homo sapiens].
          Length = 192

 Score = 96.3 bits (238), Expect = 6e-20
 Identities = 58/177 (32%), Positives = 93/177 (52%)
 Frame = +1

Query: 214 VAQPKDLEEDFGQAKKRHAELCRQKRIFNARNRIFGGDIDAWNVQVCDQKIREATEKARQ 393
           + Q  D +E      +R+ E  RQ R FN RNR+ G D+ A N QV D+K REA E++++
Sbjct: 4   IKQSTDTKEAAAIEARRNREKERQNRFFNVRNRVMGVDVQALNNQVGDRKRREAAERSKE 63

Query: 394 ETFAAEMRQNDKITCILEDRARRDRKNLCKAINDFQQSFQKPETRREFDLSDPLALKKDL 573
             +     Q D +  +LE       + L K + +F++  Q+ +  REF L DP  + K L
Sbjct: 64  AAYGTSQVQYDVVVQMLEKEEADRTRQLAKKVQEFREQKQQLKNGREFSLWDPGQVWKGL 123

Query: 574 PARQSDNDARNTVSGMQKFMGEDLNIHQRRKFQEEQNREWSLQQQREWKIAREDQKH 744
           P   S ++     + +Q F GEDL+   R + Q+ Q R    +QQ+E + A+ D+ +
Sbjct: 124 PTYLSYSNTYPGPASLQYFSGEDLDRDTRLRMQQGQFRYNLERQQQEQQQAKVDENY 180


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 51,302,145
Number of extensions: 1294564
Number of successful extensions: 5906
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 5813
Number of HSP's successfully gapped: 5
Length of query: 473
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 367
Effective length of database: 14,802,980
Effective search space: 5432693660
Effective search space used: 5432693660
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-003007
         (1419 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_080633.2| RIB43A-like with coiled-coils protein 2 [Mus mu...   403   e-117
Alignment   gi|NP_079936.1| RIB43A-like with coiled-coils protein 1 [Mus mu...   147   3e-39

>ref|NP_080633.2| RIB43A-like with coiled-coils protein 2 [Mus musculus].
          Length = 377

 Score =  403 bits (1036), Expect(2) = e-117
 Identities = 207/353 (58%), Positives = 248/353 (70%)
 Frame = +1

Query: 208  MEVAQPKDLEEDFGQAKKRHAELCRQKRIFNARNRIFGGDIDAWNVQVCDQKIREATEKA 387
            MEVA  KDL+++   AKKR+ +LCRQ RIF+ARNRI GGD  AW+ QV DQKI+E T+KA
Sbjct: 1    MEVAMSKDLQQEANLAKKRYIDLCRQGRIFDARNRIIGGDTQAWDFQVRDQKIKEITDKA 60

Query: 388  RQETFAAEMRQNDKITCILEDRARRDRKNLCKAINDFQQSFQKPETRREFDLSDPLALKK 567
            R E FAAEM+ NDK+ C+  DR +R RK LC+AINDFQQ+FQKPETRREFDLSDPLAL+K
Sbjct: 61   RHEAFAAEMKHNDKVMCMAHDREQRHRKQLCRAINDFQQNFQKPETRREFDLSDPLALQK 120

Query: 568  DLPARQSDNDARNTVSGMQKFMGEDLNIHQRRKFQEEQNREWSLQQQREWKIAREDQKHA 747
            +LPAR SDND RNT+SGMQKFMGEDLN  +RR+FQ+EQ+REW LQQ  E + AR D   A
Sbjct: 121  ELPARISDNDMRNTISGMQKFMGEDLNFQERRRFQKEQSREWFLQQHGEREKARADHLLA 180

Query: 748  EDLYLETRLQFDETAKHLQNLEGTTRKAVCAAVKEFNKNQALESAXXXXXXXXXXXXDNL 927
            E L+ +TRL+FDETA+ L  LEG+TRK VCAAVK FNKNQ +E              DN+
Sbjct: 181  EHLHTQTRLKFDETARELMKLEGSTRKEVCAAVKAFNKNQVVELTERKRQEKQQEQEDNM 240

Query: 928  AEITNLLRGDLLSEDPQQAASSFGPHRVVPDRWKGMTQEQLEQIXXXXXXXXXXXXXXXX 1107
             EITNLL GDLLSE+P+  ASSFG HRVV DRWKGM +EQLE+I                
Sbjct: 241  TEITNLLHGDLLSENPRPVASSFGSHRVVLDRWKGMNREQLEEIWFTQKRQIQEKLRLQE 300

Query: 1108 XXXXXDMDWDRQRVQKARATLLSEXXXXXXXXXXXXXXDGSNLSLAKEQLLQK 1266
                  MDWD +R++KA A+LL E              D SNL+LA++Q LQK
Sbjct: 301  EERQHSMDWDLRRIRKAHASLLHERQQQRLLREQRRALDCSNLNLARQQYLQK 353



 Score = 37.7 bits (86), Expect(2) = e-117
 Identities = 16/25 (64%), Positives = 20/25 (80%)
 Frame = +3

Query: 1263 EKYMKEIYTNQPTEDYFTQFNTRSR 1337
            +K M    ++QPTEDYF+QFNTRSR
Sbjct: 353  KKQMNTASSSQPTEDYFSQFNTRSR 377


>ref|NP_079936.1| RIB43A-like with coiled-coils protein 1 [Mus musculus].
          Length = 379

 Score =  147 bits (372), Expect(2) = 3e-39
 Identities = 107/338 (31%), Positives = 151/338 (44%), Gaps = 1/338 (0%)
 Frame = +1

Query: 259  KRHAELCRQKRIFNARNRIFGGDIDAWNVQVCDQKIREATEKARQETFAAEMRQNDKITC 438
            +R+ E  RQ R FN RNR+ G D++A N QV ++K REA E+ +   +  +    D +  
Sbjct: 19   RRNREKERQSRFFNVRNRVMGVDVEALNYQVEERKFREAIERNKDIAYGTKHAHYDLVAQ 78

Query: 439  ILEDRARRDRKNLCKAINDF-QQSFQKPETRREFDLSDPLALKKDLPARQSDNDARNTVS 615
            +LE         L K + DF +Q  Q+ +   EFD  DP   + +      + DA    +
Sbjct: 79   MLEKEEAERAYRLSKRVQDFREQRQQQYKNGHEFDFWDPDQFQ-EFRVPYYEKDAYFGPA 137

Query: 616  GMQKFMGEDLNIHQRRKFQEEQNREWSLQQQREWKIAREDQKHAEDLYLETRLQFDETAK 795
             MQ F GEDL      + Q+EQ R    +Q +E + ARE++  A  L  + RL  D  A 
Sbjct: 138  SMQYFFGEDLERASHVRMQQEQMRYNLEKQLQEQQAAREEEARAALLSDQLRLAADTRAA 197

Query: 796  HLQNLEGTTRKAVCAAVKEFNKNQALESAXXXXXXXXXXXXDNLAEITNLLRGDLLSEDP 975
             L  LE + R A+  A+   NK QA + A             NL E+   +  DLL+E+P
Sbjct: 198  ELARLEESCRAAMRTAMANANKAQAAKQALQQRREQQRQQEANLTEVKKQVTSDLLTENP 257

Query: 976  QQAASSFGPHRVVPDRWKGMTQEQLEQIXXXXXXXXXXXXXXXXXXXXXDMDWDRQRVQK 1155
            Q A  +  PHRV+P  WKGM+ EQ   I                     + +W RQ  + 
Sbjct: 258  QVAQRANAPHRVLPYCWKGMSAEQRAAIRKTQETQRQEKKEQRQAEKLVEAEWGRQNKRL 317

Query: 1156 ARATLLSEXXXXXXXXXXXXXXDGSNLSLAKEQLLQKN 1269
            A A L  E                 N  LAKEQ  Q+N
Sbjct: 318  AEAALELEEQERELCAEFRRGLGSFNRELAKEQQAQQN 355



 Score = 33.9 bits (76), Expect(2) = 3e-39
 Identities = 14/19 (73%), Positives = 15/19 (78%)
 Frame = +3

Query: 1281 IYTNQPTEDYFTQFNTRSR 1337
            IYTNQPT  Y+ QFNT SR
Sbjct: 361  IYTNQPTAHYYLQFNTSSR 379


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 43,619,711
Number of extensions: 1094064
Number of successful extensions: 5542
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5373
Number of HSP's successfully gapped: 4
Length of query: 473
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 368
Effective length of database: 12,463,779
Effective search space: 4586670672
Effective search space used: 4586670672
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-003007
         (1419 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_003126005.1| PREDICTED: RIB43A-like with coiled-coils pro...   592   e-179
Alignment   gi|XP_003126002.2| PREDICTED: RIB43A-like with coiled-coils pro...   570   e-172

>ref|XP_003126005.1| PREDICTED: RIB43A-like with coiled-coils protein 2-like [Sus scrofa].
          Length = 377

 Score =  592 bits (1526), Expect(2) = e-179
 Identities = 304/358 (84%), Positives = 306/358 (85%)
 Frame = +1

Query: 208  MEVAQPKDLEEDFGQAKKRHAELCRQKRIFNARNRIFGGDIDAWNVQVCDQKIREATEKA 387
            MEVAQPKDLEEDFGQAKKRHAELCRQKRIFNARNRIFGGDIDAWNVQVCDQKIREATEKA
Sbjct: 1    MEVAQPKDLEEDFGQAKKRHAELCRQKRIFNARNRIFGGDIDAWNVQVCDQKIREATEKA 60

Query: 388  RQETFAAEMRQNDKITCILEDRARRDRKNLCKAINDFQQSFQKPETRREFDLSDPLALKK 567
            RQETFAAEMRQNDKITCILEDRARRDRK LCKAI+DFQQSFQKPETRREFDLSDPLALKK
Sbjct: 61   RQETFAAEMRQNDKITCILEDRARRDRKTLCKAISDFQQSFQKPETRREFDLSDPLALKK 120

Query: 568  DLPARQSDNDARNTVSGMQKFMGEDLNIHQRRKFQEEQNREWSLQQQREWKIAREDQKHA 747
            DLPARQSDNDARNTVSGMQKFMGEDLN HQRRKFQEEQNREWSLQQQREWKIAREDQKHA
Sbjct: 121  DLPARQSDNDARNTVSGMQKFMGEDLNFHQRRKFQEEQNREWSLQQQREWKIAREDQKHA 180

Query: 748  EDLYLETRLQFDETAKHLQNLEGTTRKAVCAAVKEFNKNQALESAXXXXXXXXXXXXDNL 927
            EDLYLETRLQFDETAKHLQNLEGTTRKAVCAAVKEFNKNQALESA            DNL
Sbjct: 181  EDLYLETRLQFDETAKHLQNLEGTTRKAVCAAVKEFNKNQALESAEKKRQERKQEQEDNL 240

Query: 928  AEITNLLRGDLLSEDPQQAASSFGPHRVVPDRWKGMTQEQLEQIXXXXXXXXXXXXXXXX 1107
            AEITNLLRGDLLSEDPQQAASSFGPHRVVPDRWKGMTQEQLEQI                
Sbjct: 241  AEITNLLRGDLLSEDPQQAASSFGPHRVVPDRWKGMTQEQLEQIRLVQKQQVQEKLRLQE 300

Query: 1108 XXXXXDMDWDRQRVQKARATLLSEXXXXXXXXXXXXXXDGSNLSLAKEQLLQKNI*KK 1281
                 DMDWDRQRVQKARATLLSE              DGSNLSLAKEQLLQK   K+
Sbjct: 301  EERQRDMDWDRQRVQKARATLLSERQLQRQQRALRRALDGSNLSLAKEQLLQKKYMKE 358



 Score = 55.5 bits (132), Expect(2) = e-179
 Identities = 24/25 (96%), Positives = 25/25 (100%)
 Frame = +3

Query: 1263 EKYMKEIYTNQPTEDYFTQFNTRSR 1337
            +KYMKEIYTNQPTEDYFTQFNTRSR
Sbjct: 353  KKYMKEIYTNQPTEDYFTQFNTRSR 377


>ref|XP_003126002.2| PREDICTED: RIB43A-like with coiled-coils protein 2-like [Sus scrofa].
          Length = 358

 Score =  570 bits (1468), Expect(2) = e-172
 Identities = 296/358 (82%), Positives = 298/358 (83%)
 Frame = +1

Query: 208  MEVAQPKDLEEDFGQAKKRHAELCRQKRIFNARNRIFGGDIDAWNVQVCDQKIREATEKA 387
            MEVAQPKDLEEDFGQAKKRHAELCRQKRIFNARNRIFGGDIDAWNVQVCDQKIREATEKA
Sbjct: 1    MEVAQPKDLEEDFGQAKKRHAELCRQKRIFNARNRIFGGDIDAWNVQVCDQKIREATEKA 60

Query: 388  RQETFAAEMRQNDKITCILEDRARRDRKNLCKAINDFQQSFQKPETRREFDLSDPLALKK 567
            RQETFAAEMRQNDKITCILEDRARRDRK LCKAI+DFQQSFQKPETRREFDLSDPLALKK
Sbjct: 61   RQETFAAEMRQNDKITCILEDRARRDRKTLCKAISDFQQSFQKPETRREFDLSDPLALKK 120

Query: 568  DLPARQSDNDARNTVSGMQKFMGEDLNIHQRRKFQEEQNREWSLQQQREWKIAREDQKHA 747
            DLPARQSDNDARNTVSGMQKFMGEDLN HQRRKFQEEQNREWSLQQQREWKIAREDQKHA
Sbjct: 121  DLPARQSDNDARNTVSGMQKFMGEDLNFHQRRKFQEEQNREWSLQQQREWKIAREDQKHA 180

Query: 748  EDLYLETRLQFDETAKHLQNLEGTTRKAVCAAVKEFNKNQALESAXXXXXXXXXXXXDNL 927
            EDLYLETRLQFDETAKHLQNLEGTTRKAVCAAVKEFNKNQALESA            DNL
Sbjct: 181  EDLYLETRLQFDETAKHLQNLEGTTRKAVCAAVKEFNKNQALESAEKKRQERKQEQEDNL 240

Query: 928  AEITNLLRGDLLSEDPQQAASSFGPHRVVPDRWKGMTQEQLEQIXXXXXXXXXXXXXXXX 1107
            AEITNLLRGDLLSEDP   ASSFGPHRVVPDRWKGMTQEQLEQI                
Sbjct: 241  AEITNLLRGDLLSEDPPPPASSFGPHRVVPDRWKGMTQEQLEQIRLVQKQQVQEKLRLQE 300

Query: 1108 XXXXXDMDWDRQRVQKARATLLSEXXXXXXXXXXXXXXDGSNLSLAKEQLLQKNI*KK 1281
                 DMDWDRQRVQKARATLL                   NLSLAKEQLLQK   K+
Sbjct: 301  EERQRDMDWDRQRVQKARATLL-------------------NLSLAKEQLLQKKYMKE 339



 Score = 55.5 bits (132), Expect(2) = e-172
 Identities = 24/25 (96%), Positives = 25/25 (100%)
 Frame = +3

Query: 1263 EKYMKEIYTNQPTEDYFTQFNTRSR 1337
            +KYMKEIYTNQPTEDYFTQFNTRSR
Sbjct: 334  KKYMKEIYTNQPTEDYFTQFNTRSR 358


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 32,345,477
Number of extensions: 827735
Number of successful extensions: 3868
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3812
Number of HSP's successfully gapped: 4
Length of query: 473
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 370
Effective length of database: 8,779,541
Effective search space: 3248430170
Effective search space used: 3248430170
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-003007
         (1419 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GL895517.2| Sus scrofa unplaced genomic scaffold ChrUScaf3401      654   0.0  
Sscrofa_Chr05                                                         654   0.0  

>gb|GL895517.2| Sus scrofa unplaced genomic scaffold ChrUScaf3401
          Length = 13909

 Score =  654 bits (330), Expect = 0.0
 Identities = 342/346 (98%)
 Strand = Plus / Minus

                                                                        
Query: 403  gctgctgaaatgaggcagaatgacaaaatcacatgcatattagaagaccgggcaaggaga 462
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9872 gctgctgaaatgaggcagaatgacaaaatcacatgcatattagaagaccgggcaaggaga 9813

                                                                        
Query: 463  gacaggaaaaatctctgtaaagctatcaatgacttccagcagagctttcagaagccagaa 522
            |||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 9812 gacaggaaaactctctgtaaagctatcagtgacttccagcagagctttcagaagccagaa 9753

                                                                        
Query: 523  actcgccgtgaatttgacctctctgacccccttgcccttaagaaagatcttccagcccgg 582
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9752 actcgccgtgaatttgacctctctgacccccttgcccttaagaaagatcttccagcccgg 9693

                                                                        
Query: 583  cagtccgataatgatgctcggaatacggtgtcaggaatgcagaaattcatgggagaggat 642
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9692 cagtccgataatgatgctcggaatacggtgtcaggaatgcagaaattcatgggagaggat 9633

                                                                        
Query: 643  ttaaacatccatcagaggaggaaattccaagaggaacaaaacagagaatggtccttgcaa 702
            |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9632 ttaaacttccatcagaggaggaaattccaagaggaacaaaacagagaatggtccttgcaa 9573

                                                          
Query: 703  cagcagagggagtggaagattgcccgtgaggaccaaaaacacgccg 748
            ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 9572 cagcaaagggagtggaagattgcccgtgaggaccaaaaacacgccg 9527



 Score =  299 bits (151), Expect = 2e-78
 Identities = 151/151 (100%)
 Strand = Plus / Minus

                                                                         
Query: 172   aaaaacctcttggaatttctgggcgattttgcagtcatggaggtagctcagcccaaggac 231
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13405 aaaaacctcttggaatttctgggcgattttgcagtcatggaggtagctcagcccaaggac 13346

                                                                         
Query: 232   ctggaggaggactttggccaggccaagaagagacatgcagagctgtgcaggcagaaacgg 291
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13345 ctggaggaggactttggccaggccaagaagagacatgcagagctgtgcaggcagaaacgg 13286

                                            
Query: 292   atcttcaatgccaggaacaggatctttgggg 322
             |||||||||||||||||||||||||||||||
Sbjct: 13285 atcttcaatgccaggaacaggatctttgggg 13255



 Score =  252 bits (127), Expect = 5e-64
 Identities = 130/131 (99%)
 Strand = Plus / Minus

                                                                         
Query: 1     acgtttccgagggaacccggtctccacaagcccgtcgaagggcaggaagaatggactgaa 60
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13576 acgtttccgagggaacccggtctccacaagcccgtcgaagggcaggaagaatggactgaa 13517

                                                                         
Query: 61    agtctctggagcaggcgcggatcccaccggcccaggctcctagggaaccagcctcactta 120
             ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 13516 agtctctggagcaggcgcggatcccaccggcccaggctcctagggaatcagcctcactta 13457

                        
Query: 121   gcttgagcttg 131
             |||||||||||
Sbjct: 13456 gcttgagcttg 13446



 Score =  240 bits (121), Expect = 2e-60
 Identities = 121/121 (100%)
 Strand = Plus / Minus

                                                                        
Query: 748  gaggatctctacttggagaccaggctgcagtttgatgaaacagccaagcatttacagaat 807
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8632 gaggatctctacttggagaccaggctgcagtttgatgaaacagccaagcatttacagaat 8573

                                                                        
Query: 808  ctggaaggcaccaccagaaaggcggtttgtgcagctgtgaaagaattcaacaagaaccag 867
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8572 ctggaaggcaccaccagaaaggcggtttgtgcagctgtgaaagaattcaacaagaaccag 8513

             
Query: 868  g 868
            |
Sbjct: 8512 g 8512



 Score =  236 bits (119), Expect = 3e-59
 Identities = 131/135 (97%)
 Strand = Plus / Minus

                                                                        
Query: 1264 aaaaatatatgaaagaaatctatacaaatcagcccactgaagattatttcacacaattta 1323
            ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3593 aaaaatatatgaaggaaatctatacaaatcagcccactgaagattatttcacacaattta 3534

                                                                        
Query: 1324 ataccagaagtcgataatgaaaaggccacctgccctcctgctgaattgtataaagtgctg 1383
            |||| ||||||||||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct: 3533 atacaagaagtcgataatgaaaaggccacctgccttcctgctaaattgtataaagtgctg 3474

                           
Query: 1384 tacccttaaagagtc 1398
            |||||||||||||||
Sbjct: 3473 tacccttaaagagtc 3459



 Score =  224 bits (113), Expect = 1e-55
 Identities = 113/113 (100%)
 Strand = Plus / Minus

                                                                        
Query: 983  cagccagttccttcgggccccatcgcgtggtccccgaccgctggaagggcatgacccagg 1042
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7235 cagccagttccttcgggccccatcgcgtggtccccgaccgctggaagggcatgacccagg 7176

                                                                 
Query: 1043 agcagctggagcagatccgcctggttcagaaacagcaagtccaggagaagctg 1095
            |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7175 agcagctggagcagatccgcctggttcagaaacagcaagtccaggagaagctg 7123



 Score =  216 bits (109), Expect = 3e-53
 Identities = 109/109 (100%)
 Strand = Plus / Minus

                                                                        
Query: 865  caggccttggagtcagcggaaaagaaacgtcaagagagaaaacaggaacaagaggacaac 924
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7459 caggccttggagtcagcggaaaagaaacgtcaagagagaaaacaggaacaagaggacaac 7400

                                                             
Query: 925  ttggccgagatcaccaacctgctgcgtggggacctgctgtcagaggacc 973
            |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7399 ttggccgagatcaccaacctgctgcgtggggacctgctgtcagaggacc 7351



 Score =  159 bits (80), Expect = 5e-36
 Identities = 83/84 (98%)
 Strand = Plus / Minus

                                                                        
Query: 1095 gaggctccaggaagaggagcgccagcgagacatggactgggaccggcagagggttcagaa 1154
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 5062 gaggctccaggaagaggagcgccagcgggacatggactgggaccggcagagggttcagaa 5003

                                    
Query: 1155 ggctcgcgccaccttgctgtcgga 1178
            ||||||||||||||||||||||||
Sbjct: 5002 ggctcgcgccaccttgctgtcgga 4979



 Score =  157 bits (79), Expect = 2e-35
 Identities = 82/83 (98%)
 Strand = Plus / Minus

                                                                         
Query: 321   gggagacatagacgcctggaacgtacaggtttgtgaccagaagataagagaagcaacgga 380
             |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12467 gggagacatagatgcctggaacgtacaggtttgtgaccagaagataagagaagcaacgga 12408

                                    
Query: 381   aaaagctagacaggaaacatttg 403
             |||||||||||||||||||||||
Sbjct: 12407 aaaagctagacaggaaacatttg 12385



 Score = 71.9 bits (36), Expect = 9e-10
 Identities = 36/36 (100%)
 Strand = Plus / Minus

                                                
Query: 1228 agcaacctcagcctggccaaggagcagcttttgcag 1263
            ||||||||||||||||||||||||||||||||||||
Sbjct: 4878 agcaacctcagcctggccaaggagcagcttttgcag 4843


>Sscrofa_Chr05 
||          Length = 111506441

 Score =  654 bits (330), Expect = 0.0
 Identities = 342/346 (98%)
 Strand = Plus / Minus

                                                                           
Query: 403     gctgctgaaatgaggcagaatgacaaaatcacatgcatattagaagaccgggcaaggaga 462
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1206175 gctgctgaaatgaggcagaatgacaaaatcacatgcatattagaagaccgggcaaggaga 1206116

                                                                           
Query: 463     gacaggaaaaatctctgtaaagctatcaatgacttccagcagagctttcagaagccagaa 522
               |||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 1206115 gacaggaaaactctctgtaaagctatcagtgacttccagcagagctttcagaagccagaa 1206056

                                                                           
Query: 523     actcgccgtgaatttgacctctctgacccccttgcccttaagaaagatcttccagcccgg 582
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1206055 actcgccgtgaatttgacctctctgacccccttgcccttaagaaagatcttccagcccgg 1205996

                                                                           
Query: 583     cagtccgataatgatgctcggaatacggtgtcaggaatgcagaaattcatgggagaggat 642
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1205995 cagtccgataatgatgctcggaatacggtgtcaggaatgcagaaattcatgggagaggat 1205936

                                                                           
Query: 643     ttaaacatccatcagaggaggaaattccaagaggaacaaaacagagaatggtccttgcaa 702
               |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1205935 ttaaacttccatcagaggaggaaattccaagaggaacaaaacagagaatggtccttgcaa 1205876

                                                             
Query: 703     cagcagagggagtggaagattgcccgtgaggaccaaaaacacgccg 748
               ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 1205875 cagcaaagggagtggaagattgcccgtgaggaccaaaaacacgccg 1205830



 Score =  458 bits (231), Expect = e-126
 Identities = 231/231 (100%)
 Strand = Plus / Minus

                                                                           
Query: 865     caggccttggagtcagcggaaaagaaacgtcaagagagaaaacaggaacaagaggacaac 924
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1203762 caggccttggagtcagcggaaaagaaacgtcaagagagaaaacaggaacaagaggacaac 1203703

                                                                           
Query: 925     ttggccgagatcaccaacctgctgcgtggggacctgctgtcagaggacccgcagcaggca 984
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1203702 ttggccgagatcaccaacctgctgcgtggggacctgctgtcagaggacccgcagcaggca 1203643

                                                                           
Query: 985     gccagttccttcgggccccatcgcgtggtccccgaccgctggaagggcatgacccaggag 1044
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1203642 gccagttccttcgggccccatcgcgtggtccccgaccgctggaagggcatgacccaggag 1203583

                                                                  
Query: 1045    cagctggagcagatccgcctggttcagaaacagcaagtccaggagaagctg 1095
               |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1203582 cagctggagcagatccgcctggttcagaaacagcaagtccaggagaagctg 1203532



 Score =  327 bits (165), Expect = 1e-86
 Identities = 168/169 (99%)
 Strand = Plus / Minus

                                                                           
Query: 1095    gaggctccaggaagaggagcgccagcgagacatggactgggaccggcagagggttcagaa 1154
               ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 1201658 gaggctccaggaagaggagcgccagcgggacatggactgggaccggcagagggttcagaa 1201599

                                                                           
Query: 1155    ggctcgcgccaccttgctgtcggagcggcagctgcagcgccagcagcgtgcgctgcgcag 1214
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1201598 ggctcgcgccaccttgctgtcggagcggcagctgcagcgccagcagcgtgcgctgcgcag 1201539

                                                                
Query: 1215    agccctggacggcagcaacctcagcctggccaaggagcagcttttgcag 1263
               |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1201538 agccctggacggcagcaacctcagcctggccaaggagcagcttttgcag 1201490



 Score =  299 bits (151), Expect = 2e-78
 Identities = 151/151 (100%)
 Strand = Plus / Minus

                                                                           
Query: 172     aaaaacctcttggaatttctgggcgattttgcagtcatggaggtagctcagcccaaggac 231
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1209657 aaaaacctcttggaatttctgggcgattttgcagtcatggaggtagctcagcccaaggac 1209598

                                                                           
Query: 232     ctggaggaggactttggccaggccaagaagagacatgcagagctgtgcaggcagaaacgg 291
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1209597 ctggaggaggactttggccaggccaagaagagacatgcagagctgtgcaggcagaaacgg 1209538

                                              
Query: 292     atcttcaatgccaggaacaggatctttgggg 322
               |||||||||||||||||||||||||||||||
Sbjct: 1209537 atcttcaatgccaggaacaggatctttgggg 1209507



 Score =  260 bits (131), Expect = 2e-66
 Identities = 131/131 (100%)
 Strand = Plus / Minus

                                                                           
Query: 1       acgtttccgagggaacccggtctccacaagcccgtcgaagggcaggaagaatggactgaa 60
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1209828 acgtttccgagggaacccggtctccacaagcccgtcgaagggcaggaagaatggactgaa 1209769

                                                                           
Query: 61      agtctctggagcaggcgcggatcccaccggcccaggctcctagggaaccagcctcactta 120
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1209768 agtctctggagcaggcgcggatcccaccggcccaggctcctagggaaccagcctcactta 1209709

                          
Query: 121     gcttgagcttg 131
               |||||||||||
Sbjct: 1209708 gcttgagcttg 1209698



 Score =  254 bits (128), Expect = 1e-64
 Identities = 140/144 (97%)
 Strand = Plus / Minus

                                                                           
Query: 1264    aaaaatatatgaaagaaatctatacaaatcagcccactgaagattatttcacacaattta 1323
               ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1200381 aaaaatatatgaaggaaatctatacaaatcagcccactgaagattatttcacacaattta 1200322

                                                                           
Query: 1324    ataccagaagtcgataatgaaaaggccacctgccctcctgctgaattgtataaagtgctg 1383
               |||| ||||||||||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct: 1200321 atacaagaagtcgataatgaaaaggccacctgccttcctgctaaattgtataaagtgctg 1200262

                                       
Query: 1384    tacccttaaagagtcccatgtgtt 1407
               ||||||||||||||||||||||||
Sbjct: 1200261 tacccttaaagagtcccatgtgtt 1200238



 Score =  240 bits (121), Expect = 2e-60
 Identities = 121/121 (100%)
 Strand = Plus / Minus

                                                                           
Query: 748     gaggatctctacttggagaccaggctgcagtttgatgaaacagccaagcatttacagaat 807
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1204935 gaggatctctacttggagaccaggctgcagtttgatgaaacagccaagcatttacagaat 1204876

                                                                           
Query: 808     ctggaaggcaccaccagaaaggcggtttgtgcagctgtgaaagaattcaacaagaaccag 867
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1204875 ctggaaggcaccaccagaaaggcggtttgtgcagctgtgaaagaattcaacaagaaccag 1204816

                
Query: 868     g 868
               |
Sbjct: 1204815 g 1204815



 Score =  157 bits (79), Expect = 2e-35
 Identities = 82/83 (98%)
 Strand = Plus / Minus

                                                                           
Query: 321     gggagacatagacgcctggaacgtacaggtttgtgaccagaagataagagaagcaacgga 380
               |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1208719 gggagacatagatgcctggaacgtacaggtttgtgaccagaagataagagaagcaacgga 1208660

                                      
Query: 381     aaaagctagacaggaaacatttg 403
               |||||||||||||||||||||||
Sbjct: 1208659 aaaagctagacaggaaacatttg 1208637


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 43,152,524
Number of extensions: 356
Number of successful extensions: 356
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 356
Number of HSP's successfully gapped: 18
Length of query: 1419
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1398
Effective length of database: 2,808,413,156
Effective search space: 3926161592088
Effective search space used: 3926161592088
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)