Animal-Genome cDNA 20110601C-003023


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-003023
         (974 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001029448.1| transcription initiation factor TFIID subuni...   322   4e-88
Alignment   gi|XP_002696489.1| PREDICTED: TBP-associated factor 11-like [Bo...   172   4e-43
Alignment   gi|XP_872095.1| PREDICTED: TBP-associated factor 11 [Bos taurus].    172   4e-43

>ref|NP_001029448.1| transcription initiation factor TFIID subunit 11 [Bos taurus].
          Length = 210

 Score =  322 bits (824), Expect = 4e-88
 Identities = 169/205 (82%), Positives = 172/205 (83%)
 Frame = +2

Query: 101 MDNACESPAEKSGETGEADEMAAAPGAPGVTDTDGIPEETDGDGDGDLKETAAEEGELKS 280
           MDNACESP EK GETGE+DE  AAPG P VTDTDGIPEETDGDGDG+LKE AAEEGELKS
Sbjct: 1   MDNACESPKEKGGETGESDETTAAPGGPRVTDTDGIPEETDGDGDGELKEAAAEEGELKS 60

Query: 281 QDISDLTAVEREDSSLLAPAAXXXXXXXXXXXXXXXXXXXXXXXXMQILVSSFSEEQLNR 460
           QDI+DLTAVEREDS LL PAA                        MQILVSSFSEEQLNR
Sbjct: 61  QDIADLTAVEREDS-LLTPAAKKLKIDTKEKKEKKQKVDEDEIQKMQILVSSFSEEQLNR 119

Query: 461 YEMYRRSAFPKAAIKRLIQSITGTSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMP 640
           YEMYRRSAFPKAAIKRLIQSITGTSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMP
Sbjct: 120 YEMYRRSAFPKAAIKRLIQSITGTSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMP 179

Query: 641 PLQPKHMREAVRRLKSKGQIPNSKH 715
           PLQPKHMREAVRRLKSKGQIPNSKH
Sbjct: 180 PLQPKHMREAVRRLKSKGQIPNSKH 204


>ref|XP_002696489.1| PREDICTED: TBP-associated factor 11-like [Bos taurus].
          Length = 208

 Score =  172 bits (436), Expect = 4e-43
 Identities = 96/188 (51%), Positives = 118/188 (62%), Gaps = 1/188 (0%)
 Frame = +2

Query: 155 DEMAAAPGAPGVTDTDGIPEETDGDGDGDLKETAAEEG-ELKSQDISDLTAVEREDSSLL 331
           D    APG P   +          D   + ++ + EEG EL  QD     A E  DSS  
Sbjct: 16  DVSREAPGVPLGPEPSNPGRILPRDPAQNARKASDEEGGELVHQDCPQPRAGEEADSSSR 75

Query: 332 APAAXXXXXXXXXXXXXXXXXXXXXXXXMQILVSSFSEEQLNRYEMYRRSAFPKAAIKRL 511
           +P A                        M+ LV++ S+EQLNRYE++RRSAFPK+ IK L
Sbjct: 76  SPVAKRRKVDTEGKRGRQREVGEEEAQKMRTLVAAMSKEQLNRYEVFRRSAFPKSTIKHL 135

Query: 512 IQSITGTSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMPPLQPKHMREAVRRLKSK 691
           IQ++ GT VSQNVVIAMSG++KVFVGEVVEEALDVCEKWGE PPLQPKH+REAVRRL+ K
Sbjct: 136 IQAVAGTPVSQNVVIAMSGMAKVFVGEVVEEALDVCEKWGEKPPLQPKHLREAVRRLREK 195

Query: 692 GQIPNSKH 715
           GQ+P++KH
Sbjct: 196 GQMPSTKH 203


>ref|XP_872095.1| PREDICTED: TBP-associated factor 11 [Bos taurus].
          Length = 208

 Score =  172 bits (436), Expect = 4e-43
 Identities = 96/188 (51%), Positives = 118/188 (62%), Gaps = 1/188 (0%)
 Frame = +2

Query: 155 DEMAAAPGAPGVTDTDGIPEETDGDGDGDLKETAAEEG-ELKSQDISDLTAVEREDSSLL 331
           D    APG P   +          D   + ++ + EEG EL  QD     A E  DSS  
Sbjct: 16  DVSREAPGVPLGPEPSNPGRILPRDPAQNARKASDEEGGELVHQDCPQPRAGEEADSSSR 75

Query: 332 APAAXXXXXXXXXXXXXXXXXXXXXXXXMQILVSSFSEEQLNRYEMYRRSAFPKAAIKRL 511
           +P A                        M+ LV++ S+EQLNRYE++RRSAFPK+ IK L
Sbjct: 76  SPVAKRRKVDTEGKRGRQREVGEEEAQKMRTLVAAMSKEQLNRYEVFRRSAFPKSTIKHL 135

Query: 512 IQSITGTSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMPPLQPKHMREAVRRLKSK 691
           IQ++ GT VSQNVVIAMSG++KVFVGEVVEEALDVCEKWGE PPLQPKH+REAVRRL+ K
Sbjct: 136 IQAVAGTPVSQNVVIAMSGMAKVFVGEVVEEALDVCEKWGEKPPLQPKHLREAVRRLREK 195

Query: 692 GQIPNSKH 715
           GQ+P++KH
Sbjct: 196 GQMPSTKH 203


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 31,250,032
Number of extensions: 732114
Number of successful extensions: 2981
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2957
Number of HSP's successfully gapped: 3
Length of query: 324
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 222
Effective length of database: 14,306,398
Effective search space: 3176020356
Effective search space used: 3176020356
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-003023
         (974 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_532116.1| PREDICTED: similar to Transcription initiation ...   319   3e-87
Alignment   gi|XP_863674.1| PREDICTED: similar to Transcription initiation ...   315   5e-86

>ref|XP_532116.1| PREDICTED: similar to Transcription initiation factor TFIID subunit
           11 (Transcription initiation factor TFIID 28 kDa
           subunit) (TAF(II)28) (TAFII-28) (TAFII28) (TFIID subunit
           p30-beta) isoform 1 [Canis familiaris].
          Length = 211

 Score =  319 bits (817), Expect = 3e-87
 Identities = 166/205 (80%), Positives = 169/205 (82%)
 Frame = +2

Query: 101 MDNACESPAEKSGETGEADEMAAAPGAPGVTDTDGIPEETDGDGDGDLKETAAEEGELKS 280
           MDNACESP EK GE  E+DE A APG PG TDTDGIPEETD DGDGDLKE  AE+GELK+
Sbjct: 1   MDNACESPTEKGGEARESDETAPAPGVPGPTDTDGIPEETDVDGDGDLKEATAEDGELKN 60

Query: 281 QDISDLTAVEREDSSLLAPAAXXXXXXXXXXXXXXXXXXXXXXXXMQILVSSFSEEQLNR 460
           QDISDLTAVEREDSSLL PAA                        MQILVSSFSEEQLNR
Sbjct: 61  QDISDLTAVEREDSSLLTPAAKKIKIDTKEKKEKKQKVDEDEIQKMQILVSSFSEEQLNR 120

Query: 461 YEMYRRSAFPKAAIKRLIQSITGTSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMP 640
           YEMYRRSAFPKAAIKRLIQSITGTSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMP
Sbjct: 121 YEMYRRSAFPKAAIKRLIQSITGTSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMP 180

Query: 641 PLQPKHMREAVRRLKSKGQIPNSKH 715
           PLQPKHMREAVRRLKSKGQIPNSKH
Sbjct: 181 PLQPKHMREAVRRLKSKGQIPNSKH 205


>ref|XP_863674.1| PREDICTED: similar to Transcription initiation factor TFIID subunit
           11 (Transcription initiation factor TFIID 28 kDa
           subunit) (TAF(II)28) (TAFII-28) (TAFII28) (TFIID subunit
           p30-beta) isoform 2 [Canis familiaris].
          Length = 211

 Score =  315 bits (806), Expect = 5e-86
 Identities = 164/205 (80%), Positives = 167/205 (81%)
 Frame = +2

Query: 101 MDNACESPAEKSGETGEADEMAAAPGAPGVTDTDGIPEETDGDGDGDLKETAAEEGELKS 280
           MDNACESP EK GE  E+DE A APG PG TDTDGIPEETD DGDGDLKE  AE+GE  +
Sbjct: 1   MDNACESPTEKGGEARESDETAPAPGVPGPTDTDGIPEETDVDGDGDLKEATAEDGEFVN 60

Query: 281 QDISDLTAVEREDSSLLAPAAXXXXXXXXXXXXXXXXXXXXXXXXMQILVSSFSEEQLNR 460
           QDISDLTAVEREDSSLL PAA                        MQILVSSFSEEQLNR
Sbjct: 61  QDISDLTAVEREDSSLLTPAAKKIKIDTKEKKEKKQKVDEDEIQKMQILVSSFSEEQLNR 120

Query: 461 YEMYRRSAFPKAAIKRLIQSITGTSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMP 640
           YEMYRRSAFPKAAIKRLIQSITGTSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMP
Sbjct: 121 YEMYRRSAFPKAAIKRLIQSITGTSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMP 180

Query: 641 PLQPKHMREAVRRLKSKGQIPNSKH 715
           PLQPKHMREAVRRLKSKGQIPNSKH
Sbjct: 181 PLQPKHMREAVRRLKSKGQIPNSKH 205


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 32,614,446
Number of extensions: 756212
Number of successful extensions: 3089
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3065
Number of HSP's successfully gapped: 2
Length of query: 324
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 221
Effective length of database: 15,440,896
Effective search space: 3412438016
Effective search space used: 3412438016
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-003023
         (974 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_005634.1| transcription initiation factor TFIID subunit 1...   314   7e-86
Alignment   gi|XP_373076.5| PREDICTED: putative TAF11-like protein ENSP0000...   184   1e-46
Alignment   gi|XP_001713978.3| PREDICTED: putative TAF11-like protein ENSP0...   184   1e-46
Alignment   gi|XP_373077.2| PREDICTED: putative TAF11-like protein ENSP0000...   182   5e-46
Alignment   gi|XP_377884.3| PREDICTED: putative TAF11-like protein ENSP0000...   179   3e-45
Alignment   gi|XP_001131099.2| PREDICTED: putative TAF11-like protein ENSP0...   179   3e-45
Alignment   gi|XP_001131091.1| PREDICTED: putative TAF11-like protein ENSP0...   179   3e-45
Alignment   gi|XP_001131132.1| PREDICTED: putative TAF11-like protein ENSP0...   179   3e-45
Alignment   gi|XP_001715084.1| PREDICTED: putative TAF11-like protein ENSP0...   179   4e-45
Alignment   gi|XP_373078.1| PREDICTED: putative TAF11-like protein ENSP0000...   172   5e-43

>ref|NP_005634.1| transcription initiation factor TFIID subunit 11 [Homo sapiens].
          Length = 211

 Score =  314 bits (805), Expect = 7e-86
 Identities = 164/205 (80%), Positives = 170/205 (82%)
 Frame = +2

Query: 101 MDNACESPAEKSGETGEADEMAAAPGAPGVTDTDGIPEETDGDGDGDLKETAAEEGELKS 280
           MD+A ESP++K GETGE+DE AA PG PG TDTDGIPEETDGD D DLKE AAEEGEL+S
Sbjct: 1   MDDAHESPSDKGGETGESDETAAVPGDPGATDTDGIPEETDGDADVDLKEAAAEEGELES 60

Query: 281 QDISDLTAVEREDSSLLAPAAXXXXXXXXXXXXXXXXXXXXXXXXMQILVSSFSEEQLNR 460
           QD+SDLT VEREDSSLL PAA                        MQILVSSFSEEQLNR
Sbjct: 61  QDVSDLTTVEREDSSLLNPAAKKLKIDTKEKKEKKQKVDEDEIQKMQILVSSFSEEQLNR 120

Query: 461 YEMYRRSAFPKAAIKRLIQSITGTSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMP 640
           YEMYRRSAFPKAAIKRLIQSITGTSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMP
Sbjct: 121 YEMYRRSAFPKAAIKRLIQSITGTSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMP 180

Query: 641 PLQPKHMREAVRRLKSKGQIPNSKH 715
           PLQPKHMREAVRRLKSKGQIPNSKH
Sbjct: 181 PLQPKHMREAVRRLKSKGQIPNSKH 205


>ref|XP_373076.5| PREDICTED: putative TAF11-like protein ENSP00000332601-like [Homo
           sapiens].
          Length = 259

 Score =  184 bits (466), Expect = 1e-46
 Identities = 113/239 (47%), Positives = 139/239 (58%), Gaps = 5/239 (2%)
 Frame = +2

Query: 14  QEVSSWAAVLRGVPSS*ALDVLSPLLLTAMDNACE-----SPAEKSGETGEADEMAAAPG 178
           Q  S  AAV   VP+    +  +P   +A   A       SP E   +   + EM   P 
Sbjct: 20  QVCSVTAAVQAEVPAGVIHNRTTPARTSACTAAVTEQTGISPMETGRQRDASAEMFPMPR 79

Query: 179 APGVTDTDGIPEETDGDGDGDLKETAAEEGELKSQDISDLTAVEREDSSLLAPAAXXXXX 358
               ++ DGIPE    D DG+L+E   +E EL+SQD+ DLT  + E S+   P+A     
Sbjct: 80  GLKYSNKDGIPE----DLDGNLEEPRDQESELRSQDVMDLTEGDNEASASTPPSAKRQKT 135

Query: 359 XXXXXXXXXXXXXXXXXXXMQILVSSFSEEQLNRYEMYRRSAFPKAAIKRLIQSITGTSV 538
                              M  L S+ SEEQL+RYE+ RRSAFPKA I  L+QSITG SV
Sbjct: 136 DTKGKKERKPTMDAEEAQRMTTLFSAMSEEQLSRYEVCRRSAFPKARIAALMQSITGRSV 195

Query: 539 SQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMPPLQPKHMREAVRRLKSKGQIPNSKH 715
           S+N  IAM+GI+KVFVGEVVEEALDVCE WGE PPLQPKH+REAVRRLK KG +PNS +
Sbjct: 196 SENTAIAMAGIAKVFVGEVVEEALDVCEMWGETPPLQPKHLREAVRRLKPKGILPNSNY 254


>ref|XP_001713978.3| PREDICTED: putative TAF11-like protein ENSP00000332601-like [Homo
           sapiens].
          Length = 251

 Score =  184 bits (466), Expect = 1e-46
 Identities = 103/199 (51%), Positives = 125/199 (62%)
 Frame = +2

Query: 119 SPAEKSGETGEADEMAAAPGAPGVTDTDGIPEETDGDGDGDLKETAAEEGELKSQDISDL 298
           SP E   +   + EM   P     ++ DGIPE    D DG+L+E   +E EL+SQD+ DL
Sbjct: 52  SPMETGRQRDASAEMFPMPRGLKYSNKDGIPE----DLDGNLEEPRDQESELRSQDVMDL 107

Query: 299 TAVEREDSSLLAPAAXXXXXXXXXXXXXXXXXXXXXXXXMQILVSSFSEEQLNRYEMYRR 478
           T  + E S+   P+A                        M  L S+ SEEQL+RYE+ RR
Sbjct: 108 TEGDNEASASTPPSAKRQKTDTKGKKERKPTMDAEEAQRMTTLFSAMSEEQLSRYEVCRR 167

Query: 479 SAFPKAAIKRLIQSITGTSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMPPLQPKH 658
           SAFPKA I  L+QSITG SVS+N  IAM+GI+KVFVGEVVEEALDVCE WGE PPLQPKH
Sbjct: 168 SAFPKARIAALMQSITGRSVSENTAIAMAGIAKVFVGEVVEEALDVCEMWGETPPLQPKH 227

Query: 659 MREAVRRLKSKGQIPNSKH 715
           +REAVRRLK KG +PNS +
Sbjct: 228 LREAVRRLKPKGLLPNSNY 246


>ref|XP_373077.2| PREDICTED: putative TAF11-like protein ENSP00000332601-like [Homo
           sapiens].
          Length = 198

 Score =  182 bits (461), Expect = 5e-46
 Identities = 101/196 (51%), Positives = 126/196 (64%)
 Frame = +2

Query: 128 EKSGETGEADEMAAAPGAPGVTDTDGIPEETDGDGDGDLKETAAEEGELKSQDISDLTAV 307
           E   +TG + EM A P     +  DGIPE    D DG+L+E   +EGEL+S+D+ DLT  
Sbjct: 2   ETGRQTGVSAEMLAMPRGLKGSKKDGIPE----DLDGNLEEPRDQEGELRSEDVMDLTEG 57

Query: 308 EREDSSLLAPAAXXXXXXXXXXXXXXXXXXXXXXXXMQILVSSFSEEQLNRYEMYRRSAF 487
           + E S+   PAA                        M  L+S+ SEEQL+RYE+ RRSAF
Sbjct: 58  DSEASASAPPAAKRRKTHTKRKKERKPTVDAEEAQRMTTLLSAMSEEQLSRYEVCRRSAF 117

Query: 488 PKAAIKRLIQSITGTSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMPPLQPKHMRE 667
           P+A I  L++SITG+SVS+N  IAM+GI+KVFVGEVVEEALD+CE WGE PPLQPKH+RE
Sbjct: 118 PRARIAGLMRSITGSSVSENAAIAMAGIAKVFVGEVVEEALDMCEMWGETPPLQPKHLRE 177

Query: 668 AVRRLKSKGQIPNSKH 715
           AV RLK KG  PNS +
Sbjct: 178 AVHRLKPKGLFPNSNY 193


>ref|XP_377884.3| PREDICTED: putative TAF11-like protein ENSP00000332601-like [Homo
           sapiens].
          Length = 198

 Score =  179 bits (454), Expect = 3e-45
 Identities = 99/194 (51%), Positives = 125/194 (64%)
 Frame = +2

Query: 128 EKSGETGEADEMAAAPGAPGVTDTDGIPEETDGDGDGDLKETAAEEGELKSQDISDLTAV 307
           E   +TG + EM A P     +  DGIPE    D DG+L+    +EGEL+S+D+ DLT  
Sbjct: 2   ETGRQTGVSAEMLAMPRGLKGSKKDGIPE----DLDGNLEAPRDQEGELRSEDVMDLTEG 57

Query: 308 EREDSSLLAPAAXXXXXXXXXXXXXXXXXXXXXXXXMQILVSSFSEEQLNRYEMYRRSAF 487
           + E S+   PAA                        M  L+S+ SEEQL+RYE+ RRSAF
Sbjct: 58  DSEASASAPPAAKRRKTHTKGKKESKPTVDAEEAQRMTTLLSAMSEEQLSRYEVCRRSAF 117

Query: 488 PKAAIKRLIQSITGTSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMPPLQPKHMRE 667
           P+A +  L+++ITG+SVS+N  IAM+GI+K+FVGEVVEEALDVCE WGE PPLQPKH+RE
Sbjct: 118 PRARVAGLMRAITGSSVSENAAIAMAGIAKLFVGEVVEEALDVCEMWGETPPLQPKHLRE 177

Query: 668 AVRRLKSKGQIPNS 709
           AVRRLK KG  PNS
Sbjct: 178 AVRRLKPKGLFPNS 191


>ref|XP_001131099.2| PREDICTED: putative TAF11-like protein ENSP00000332601-like [Homo
           sapiens].
          Length = 198

 Score =  179 bits (454), Expect = 3e-45
 Identities = 99/194 (51%), Positives = 125/194 (64%)
 Frame = +2

Query: 128 EKSGETGEADEMAAAPGAPGVTDTDGIPEETDGDGDGDLKETAAEEGELKSQDISDLTAV 307
           E   +TG + EM A P     +  DGIPE    D DG+L+    +EGEL+S+D+ DLT  
Sbjct: 2   ETGRQTGVSAEMLAMPRGLKGSKKDGIPE----DLDGNLEAPRDQEGELRSEDVMDLTEG 57

Query: 308 EREDSSLLAPAAXXXXXXXXXXXXXXXXXXXXXXXXMQILVSSFSEEQLNRYEMYRRSAF 487
           + E S+   PAA                        M  L+S+ SEEQL+RYE+ RRSAF
Sbjct: 58  DSEASASAPPAAKRRKTHTKGKKESKPTVDAEEAQRMTTLLSAMSEEQLSRYEVCRRSAF 117

Query: 488 PKAAIKRLIQSITGTSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMPPLQPKHMRE 667
           P+A +  L+++ITG+SVS+N  IAM+GI+K+FVGEVVEEALDVCE WGE PPLQPKH+RE
Sbjct: 118 PRARVAGLMRAITGSSVSENAAIAMAGIAKLFVGEVVEEALDVCEMWGETPPLQPKHLRE 177

Query: 668 AVRRLKSKGQIPNS 709
           AVRRLK KG  PNS
Sbjct: 178 AVRRLKPKGLFPNS 191


>ref|XP_001131091.1| PREDICTED: putative TAF11-like protein ENSP00000332601-like [Homo
           sapiens].
          Length = 198

 Score =  179 bits (454), Expect = 3e-45
 Identities = 99/194 (51%), Positives = 125/194 (64%)
 Frame = +2

Query: 128 EKSGETGEADEMAAAPGAPGVTDTDGIPEETDGDGDGDLKETAAEEGELKSQDISDLTAV 307
           E   +TG + EM A P     +  DGIPE    D DG+L+    +EGEL+S+D+ DLT  
Sbjct: 2   ETGRQTGVSAEMLAMPRGLKGSKKDGIPE----DLDGNLEAPRDQEGELRSEDVMDLTEG 57

Query: 308 EREDSSLLAPAAXXXXXXXXXXXXXXXXXXXXXXXXMQILVSSFSEEQLNRYEMYRRSAF 487
           + E S+   PAA                        M  L+S+ SEEQL+RYE+ RRSAF
Sbjct: 58  DSEASASAPPAAKRRKTHTKGKKESKPTVDAEEAQRMTTLLSAMSEEQLSRYEVCRRSAF 117

Query: 488 PKAAIKRLIQSITGTSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMPPLQPKHMRE 667
           P+A +  L+++ITG+SVS+N  IAM+GI+K+FVGEVVEEALDVCE WGE PPLQPKH+RE
Sbjct: 118 PRARVAGLMRAITGSSVSENAAIAMAGIAKLFVGEVVEEALDVCEMWGETPPLQPKHLRE 177

Query: 668 AVRRLKSKGQIPNS 709
           AVRRLK KG  PNS
Sbjct: 178 AVRRLKPKGLFPNS 191


>ref|XP_001131132.1| PREDICTED: putative TAF11-like protein ENSP00000332601-like [Homo
           sapiens].
          Length = 198

 Score =  179 bits (454), Expect = 3e-45
 Identities = 99/194 (51%), Positives = 125/194 (64%)
 Frame = +2

Query: 128 EKSGETGEADEMAAAPGAPGVTDTDGIPEETDGDGDGDLKETAAEEGELKSQDISDLTAV 307
           E   +TG + EM A P     +  DGIPE    D DG+L+    +EGEL+S+D+ DLT  
Sbjct: 2   ETGRQTGVSAEMLAMPRGLKGSKKDGIPE----DLDGNLEAPRDQEGELRSEDVMDLTEG 57

Query: 308 EREDSSLLAPAAXXXXXXXXXXXXXXXXXXXXXXXXMQILVSSFSEEQLNRYEMYRRSAF 487
           + E S+   PAA                        M  L+S+ SEEQL+RYE+ RRSAF
Sbjct: 58  DSEASASAPPAAKRRKTHTKGKKESKPTVDAEEAQRMTTLLSAMSEEQLSRYEVCRRSAF 117

Query: 488 PKAAIKRLIQSITGTSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMPPLQPKHMRE 667
           P+A +  L+++ITG+SVS+N  IAM+GI+K+FVGEVVEEALDVCE WGE PPLQPKH+RE
Sbjct: 118 PRARVAGLMRAITGSSVSENAAIAMAGIAKLFVGEVVEEALDVCEMWGETPPLQPKHLRE 177

Query: 668 AVRRLKSKGQIPNS 709
           AVRRLK KG  PNS
Sbjct: 178 AVRRLKPKGLFPNS 191


>ref|XP_001715084.1| PREDICTED: putative TAF11-like protein ENSP00000332601-like [Homo
           sapiens].
          Length = 198

 Score =  179 bits (453), Expect = 4e-45
 Identities = 100/196 (51%), Positives = 125/196 (63%)
 Frame = +2

Query: 128 EKSGETGEADEMAAAPGAPGVTDTDGIPEETDGDGDGDLKETAAEEGELKSQDISDLTAV 307
           E   +TG + EM A P     +  DGIPE    D DG+L+E   +EGEL+S+D+ DLT  
Sbjct: 2   ETGRQTGVSAEMLAMPRGLKGSKKDGIPE----DLDGNLEEPRDQEGELRSEDVMDLTEG 57

Query: 308 EREDSSLLAPAAXXXXXXXXXXXXXXXXXXXXXXXXMQILVSSFSEEQLNRYEMYRRSAF 487
           + E S+   PAA                        M  L+S+ SEEQL+RYE+ R SAF
Sbjct: 58  DSEASASAPPAAKRRKTHTKRKKESKPTVDAEEAQRMTTLLSAMSEEQLSRYEVCRWSAF 117

Query: 488 PKAAIKRLIQSITGTSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMPPLQPKHMRE 667
           P+A I  L++SITG+SVS+N  IAM+GI+KVFVGEVVEEALD+CE WGE PPLQPKH+RE
Sbjct: 118 PRARIAGLMRSITGSSVSENAAIAMAGIAKVFVGEVVEEALDMCEMWGETPPLQPKHLRE 177

Query: 668 AVRRLKSKGQIPNSKH 715
           AV RLK KG  PNS +
Sbjct: 178 AVHRLKPKGLFPNSNY 193


>ref|XP_373078.1| PREDICTED: putative TAF11-like protein ENSP00000332601-like [Homo
           sapiens].
          Length = 197

 Score =  172 bits (435), Expect = 5e-43
 Identities = 97/194 (50%), Positives = 122/194 (62%)
 Frame = +2

Query: 128 EKSGETGEADEMAAAPGAPGVTDTDGIPEETDGDGDGDLKETAAEEGELKSQDISDLTAV 307
           E   +TG + EM A P      + DGIPE  DG+    L+E  A+E EL+S+D+ DLT V
Sbjct: 2   ETGRQTGVSAEMFAIPRGLKGCNEDGIPEALDGN----LEEPRAQECELRSEDVMDLTVV 57

Query: 308 EREDSSLLAPAAXXXXXXXXXXXXXXXXXXXXXXXXMQILVSSFSEEQLNRYEMYRRSAF 487
           + E S+   PAA                        M  L+S+ SEEQL+RYE+ R+ AF
Sbjct: 58  DNEASASAPPAAKRQKTDTKGQKERKPSVDAEEAQRMTTLLSAMSEEQLSRYEVCRQLAF 117

Query: 488 PKAAIKRLIQSITGTSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMPPLQPKHMRE 667
           PKA + RL+ SITG SV +N+ IAM+GI+KVFVGEVVEEALD+CE WGEMPPLQP  +RE
Sbjct: 118 PKALVARLMWSITGRSVPENMAIAMAGIAKVFVGEVVEEALDMCEMWGEMPPLQPMDLRE 177

Query: 668 AVRRLKSKGQIPNS 709
           AV RLK KG  PN+
Sbjct: 178 AVCRLKPKGLFPNN 191


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 32,043,531
Number of extensions: 746297
Number of successful extensions: 3158
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 3108
Number of HSP's successfully gapped: 13
Length of query: 324
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 221
Effective length of database: 14,901,872
Effective search space: 3293313712
Effective search space used: 3293313712
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-003023
         (974 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_081112.1| transcription initiation factor TFIID subunit 1...   295   5e-80

>ref|NP_081112.1| transcription initiation factor TFIID subunit 11 [Mus musculus].
          Length = 211

 Score =  295 bits (754), Expect = 5e-80
 Identities = 155/205 (75%), Positives = 162/205 (79%)
 Frame = +2

Query: 101 MDNACESPAEKSGETGEADEMAAAPGAPGVTDTDGIPEETDGDGDGDLKETAAEEGELKS 280
           MDN  ESP +K GE GE++E  A PGA    DT+GIPEETD DGD DLKE AAEE ELKS
Sbjct: 1   MDNLGESPTDKGGEPGESEETRATPGALVAADTEGIPEETDRDGDADLKEAAAEESELKS 60

Query: 281 QDISDLTAVEREDSSLLAPAAXXXXXXXXXXXXXXXXXXXXXXXXMQILVSSFSEEQLNR 460
           QD+SD+TA ERE+SSLL PAA                        MQILVSSFSEEQLNR
Sbjct: 61  QDVSDVTAAERENSSLLTPAAKKLKLDIKDKKEKKQKVDEDEIQKMQILVSSFSEEQLNR 120

Query: 461 YEMYRRSAFPKAAIKRLIQSITGTSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMP 640
           YEMYRRSAFPKAAIKRLIQSITGTSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGE P
Sbjct: 121 YEMYRRSAFPKAAIKRLIQSITGTSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGETP 180

Query: 641 PLQPKHMREAVRRLKSKGQIPNSKH 715
           PLQPKHMREAVRRLKSKGQIPNSKH
Sbjct: 181 PLQPKHMREAVRRLKSKGQIPNSKH 205


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 27,232,409
Number of extensions: 630300
Number of successful extensions: 2503
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2479
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 222
Effective length of database: 12,553,887
Effective search space: 2786962914
Effective search space used: 2786962914
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-003023
         (974 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001171823.1| transcription initiation factor TFIID subuni...   347   6e-96

>ref|NP_001171823.1| transcription initiation factor TFIID subunit 11 [Sus scrofa].
          Length = 211

 Score =  347 bits (890), Expect = 6e-96
 Identities = 181/205 (88%), Positives = 181/205 (88%)
 Frame = +2

Query: 101 MDNACESPAEKSGETGEADEMAAAPGAPGVTDTDGIPEETDGDGDGDLKETAAEEGELKS 280
           MDNACESPAEKSGETGEADEMAAAPGAPGVTDTDGIPEETDGDGDGDLKETAAEEGELKS
Sbjct: 1   MDNACESPAEKSGETGEADEMAAAPGAPGVTDTDGIPEETDGDGDGDLKETAAEEGELKS 60

Query: 281 QDISDLTAVEREDSSLLAPAAXXXXXXXXXXXXXXXXXXXXXXXXMQILVSSFSEEQLNR 460
           QDISDLTAVEREDSSLLAPAA                        MQILVSSFSEEQLNR
Sbjct: 61  QDISDLTAVEREDSSLLAPAAKKLKIDTKEKKEKKQKVDEDEIQKMQILVSSFSEEQLNR 120

Query: 461 YEMYRRSAFPKAAIKRLIQSITGTSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMP 640
           YEMYRRSAFPKAAIKRLIQSITGTSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMP
Sbjct: 121 YEMYRRSAFPKAAIKRLIQSITGTSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMP 180

Query: 641 PLQPKHMREAVRRLKSKGQIPNSKH 715
           PLQPKHMREAVRRLKSKGQIPNSKH
Sbjct: 181 PLQPKHMREAVRRLKSKGQIPNSKH 205


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 20,095,380
Number of extensions: 468984
Number of successful extensions: 1925
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1915
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 225
Effective length of database: 8,879,129
Effective search space: 1997804025
Effective search space used: 1997804025
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-003023
         (974 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr07                                                         670   0.0  

>Sscrofa_Chr07 
||          Length = 134764511

 Score =  670 bits (338), Expect = 0.0
 Identities = 361/371 (97%)
 Strand = Plus / Minus

                                                                            
Query: 604      agcactggatgtgtgtgagaagtggggagaaatgccaccactacaaccgaaacatatgag 663
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35544360 agcactggatgtgtgtgagaagtggggagaaatgccaccactacaaccgaaacatatgag 35544301

                                                                            
Query: 664      ggaggctgttcgaaggttaaagtcgaaggggcagattcccaactcaaagcacnnnnnnnt 723
                ||||||||||||||||||||||||||||||||||||||||||||||||||||       |
Sbjct: 35544300 ggaggctgttcgaaggttaaagtcgaaggggcagattcccaactcaaagcacaaaaaaat 35544241

                                                                            
Query: 724      catcttcttttagactgaaatctagaaagacctattactgacggaagaagtgctggttcc 783
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35544240 catcttcttttagactgaaatctagaaagacctattactgacggaagaagtgctggttcc 35544181

                                                                            
Query: 784      aggcttcgtattgcatgagactttctgcactggtgctttagtatctcagtcctccaagga 843
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35544180 aggcttcgtattgcatgagactttctgcactggtgctttagtatctcagtcctccaagga 35544121

                                                                            
Query: 844      ttccatgatgttttaatgtctttctcaaactctgatattcattacacctagaagaaggca 903
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35544120 ttccatgatgttttaatgtctttctcaaactctgatattcattacacctagaagaaggca 35544061

                                                                            
Query: 904      tgcagcctgttgccttgacttgggacccctgaaggcccgtgaaggcatccagctcttact 963
                |||||||||||||||||||||||||||||||| ||||  |||||||||||||||||||||
Sbjct: 35544060 tgcagcctgttgccttgacttgggacccctgagggccgttgaaggcatccagctcttact 35544001

                           
Query: 964      ggctagtttga 974
                |||||||||||
Sbjct: 35544000 ggctagtttga 35543990



 Score =  531 bits (268), Expect = e-148
 Identities = 268/268 (100%)
 Strand = Plus / Minus

                                                                            
Query: 4        aacgcgacgacaggaagtgagctcctgggctgctgtgctgcgcggggtcccgagctccta 63
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35555306 aacgcgacgacaggaagtgagctcctgggctgctgtgctgcgcggggtcccgagctccta 35555247

                                                                            
Query: 64       agccctcgatgtcctttcccctctccttctgaccgcgatggataatgcttgcgagtcgcc 123
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35555246 agccctcgatgtcctttcccctctccttctgaccgcgatggataatgcttgcgagtcgcc 35555187

                                                                            
Query: 124      cgcggaaaaaagtggagaaacaggggaggcagatgagatggctgctgctcccggggctcc 183
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35555186 cgcggaaaaaagtggagaaacaggggaggcagatgagatggctgctgctcccggggctcc 35555127

                                                                            
Query: 184      cggggttacggacacggacggaatcccggaggaaacggatggagacggagatggggactt 243
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35555126 cggggttacggacacggacggaatcccggaggaaacggatggagacggagatggggactt 35555067

                                            
Query: 244      gaaagaaaccgcggctgaagaaggcgag 271
                ||||||||||||||||||||||||||||
Sbjct: 35555066 gaaagaaaccgcggctgaagaaggcgag 35555039



 Score =  194 bits (98), Expect = 6e-47
 Identities = 98/98 (100%)
 Strand = Plus / Minus

                                                                            
Query: 508      gctgatccagtctatcactggcacctctgtgtctcagaatgttgttattgcaatgtctgg 567
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35546325 gctgatccagtctatcactggcacctctgtgtctcagaatgttgttattgcaatgtctgg 35546266

                                                      
Query: 568      tatttccaaagttttcgtcggggaggtcgtagaagaag 605
                ||||||||||||||||||||||||||||||||||||||
Sbjct: 35546265 tatttccaaagttttcgtcggggaggtcgtagaagaag 35546228



 Score =  170 bits (86), Expect = 9e-40
 Identities = 86/86 (100%)
 Strand = Plus / Minus

                                                                            
Query: 423      tcctggtttcttctttttctgaggagcagctgaaccgttatgagatgtaccgccggtcag 482
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35546768 tcctggtttcttctttttctgaggagcagctgaaccgttatgagatgtaccgccggtcag 35546709

                                          
Query: 483      ccttccccaaggcagccattaaaagg 508
                ||||||||||||||||||||||||||
Sbjct: 35546708 ccttccccaaggcagccattaaaagg 35546683



 Score =  147 bits (74), Expect = 1e-32
 Identities = 74/74 (100%)
 Strand = Plus / Minus

                                                                            
Query: 270      agctcaagagtcaggatatctcagatttaacagcagttgaaagagaagactcatcgttac 329
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35549901 agctcaagagtcaggatatctcagatttaacagcagttgaaagagaagactcatcgttac 35549842

                              
Query: 330      ttgctcctgcagcc 343
                ||||||||||||||
Sbjct: 35549841 ttgctcctgcagcc 35549828


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 25,101,040
Number of extensions: 148
Number of successful extensions: 148
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 147
Number of HSP's successfully gapped: 5
Length of query: 974
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 953
Effective length of database: 2,808,413,156
Effective search space: 2676417737668
Effective search space used: 2676417737668
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)