Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003023
(974 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029448.1| transcription initiation factor TFIID subuni... 322 4e-88
Alignment gi|XP_002696489.1| PREDICTED: TBP-associated factor 11-like [Bo... 172 4e-43
Alignment gi|XP_872095.1| PREDICTED: TBP-associated factor 11 [Bos taurus]. 172 4e-43
>ref|NP_001029448.1| transcription initiation factor TFIID subunit 11 [Bos taurus].
Length = 210
Score = 322 bits (824), Expect = 4e-88
Identities = 169/205 (82%), Positives = 172/205 (83%)
Frame = +2
Query: 101 MDNACESPAEKSGETGEADEMAAAPGAPGVTDTDGIPEETDGDGDGDLKETAAEEGELKS 280
MDNACESP EK GETGE+DE AAPG P VTDTDGIPEETDGDGDG+LKE AAEEGELKS
Sbjct: 1 MDNACESPKEKGGETGESDETTAAPGGPRVTDTDGIPEETDGDGDGELKEAAAEEGELKS 60
Query: 281 QDISDLTAVEREDSSLLAPAAXXXXXXXXXXXXXXXXXXXXXXXXMQILVSSFSEEQLNR 460
QDI+DLTAVEREDS LL PAA MQILVSSFSEEQLNR
Sbjct: 61 QDIADLTAVEREDS-LLTPAAKKLKIDTKEKKEKKQKVDEDEIQKMQILVSSFSEEQLNR 119
Query: 461 YEMYRRSAFPKAAIKRLIQSITGTSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMP 640
YEMYRRSAFPKAAIKRLIQSITGTSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMP
Sbjct: 120 YEMYRRSAFPKAAIKRLIQSITGTSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMP 179
Query: 641 PLQPKHMREAVRRLKSKGQIPNSKH 715
PLQPKHMREAVRRLKSKGQIPNSKH
Sbjct: 180 PLQPKHMREAVRRLKSKGQIPNSKH 204
>ref|XP_002696489.1| PREDICTED: TBP-associated factor 11-like [Bos taurus].
Length = 208
Score = 172 bits (436), Expect = 4e-43
Identities = 96/188 (51%), Positives = 118/188 (62%), Gaps = 1/188 (0%)
Frame = +2
Query: 155 DEMAAAPGAPGVTDTDGIPEETDGDGDGDLKETAAEEG-ELKSQDISDLTAVEREDSSLL 331
D APG P + D + ++ + EEG EL QD A E DSS
Sbjct: 16 DVSREAPGVPLGPEPSNPGRILPRDPAQNARKASDEEGGELVHQDCPQPRAGEEADSSSR 75
Query: 332 APAAXXXXXXXXXXXXXXXXXXXXXXXXMQILVSSFSEEQLNRYEMYRRSAFPKAAIKRL 511
+P A M+ LV++ S+EQLNRYE++RRSAFPK+ IK L
Sbjct: 76 SPVAKRRKVDTEGKRGRQREVGEEEAQKMRTLVAAMSKEQLNRYEVFRRSAFPKSTIKHL 135
Query: 512 IQSITGTSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMPPLQPKHMREAVRRLKSK 691
IQ++ GT VSQNVVIAMSG++KVFVGEVVEEALDVCEKWGE PPLQPKH+REAVRRL+ K
Sbjct: 136 IQAVAGTPVSQNVVIAMSGMAKVFVGEVVEEALDVCEKWGEKPPLQPKHLREAVRRLREK 195
Query: 692 GQIPNSKH 715
GQ+P++KH
Sbjct: 196 GQMPSTKH 203
>ref|XP_872095.1| PREDICTED: TBP-associated factor 11 [Bos taurus].
Length = 208
Score = 172 bits (436), Expect = 4e-43
Identities = 96/188 (51%), Positives = 118/188 (62%), Gaps = 1/188 (0%)
Frame = +2
Query: 155 DEMAAAPGAPGVTDTDGIPEETDGDGDGDLKETAAEEG-ELKSQDISDLTAVEREDSSLL 331
D APG P + D + ++ + EEG EL QD A E DSS
Sbjct: 16 DVSREAPGVPLGPEPSNPGRILPRDPAQNARKASDEEGGELVHQDCPQPRAGEEADSSSR 75
Query: 332 APAAXXXXXXXXXXXXXXXXXXXXXXXXMQILVSSFSEEQLNRYEMYRRSAFPKAAIKRL 511
+P A M+ LV++ S+EQLNRYE++RRSAFPK+ IK L
Sbjct: 76 SPVAKRRKVDTEGKRGRQREVGEEEAQKMRTLVAAMSKEQLNRYEVFRRSAFPKSTIKHL 135
Query: 512 IQSITGTSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMPPLQPKHMREAVRRLKSK 691
IQ++ GT VSQNVVIAMSG++KVFVGEVVEEALDVCEKWGE PPLQPKH+REAVRRL+ K
Sbjct: 136 IQAVAGTPVSQNVVIAMSGMAKVFVGEVVEEALDVCEKWGEKPPLQPKHLREAVRRLREK 195
Query: 692 GQIPNSKH 715
GQ+P++KH
Sbjct: 196 GQMPSTKH 203
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 31,250,032
Number of extensions: 732114
Number of successful extensions: 2981
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2957
Number of HSP's successfully gapped: 3
Length of query: 324
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 222
Effective length of database: 14,306,398
Effective search space: 3176020356
Effective search space used: 3176020356
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003023
(974 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_532116.1| PREDICTED: similar to Transcription initiation ... 319 3e-87
Alignment gi|XP_863674.1| PREDICTED: similar to Transcription initiation ... 315 5e-86
>ref|XP_532116.1| PREDICTED: similar to Transcription initiation factor TFIID subunit
11 (Transcription initiation factor TFIID 28 kDa
subunit) (TAF(II)28) (TAFII-28) (TAFII28) (TFIID subunit
p30-beta) isoform 1 [Canis familiaris].
Length = 211
Score = 319 bits (817), Expect = 3e-87
Identities = 166/205 (80%), Positives = 169/205 (82%)
Frame = +2
Query: 101 MDNACESPAEKSGETGEADEMAAAPGAPGVTDTDGIPEETDGDGDGDLKETAAEEGELKS 280
MDNACESP EK GE E+DE A APG PG TDTDGIPEETD DGDGDLKE AE+GELK+
Sbjct: 1 MDNACESPTEKGGEARESDETAPAPGVPGPTDTDGIPEETDVDGDGDLKEATAEDGELKN 60
Query: 281 QDISDLTAVEREDSSLLAPAAXXXXXXXXXXXXXXXXXXXXXXXXMQILVSSFSEEQLNR 460
QDISDLTAVEREDSSLL PAA MQILVSSFSEEQLNR
Sbjct: 61 QDISDLTAVEREDSSLLTPAAKKIKIDTKEKKEKKQKVDEDEIQKMQILVSSFSEEQLNR 120
Query: 461 YEMYRRSAFPKAAIKRLIQSITGTSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMP 640
YEMYRRSAFPKAAIKRLIQSITGTSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMP
Sbjct: 121 YEMYRRSAFPKAAIKRLIQSITGTSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMP 180
Query: 641 PLQPKHMREAVRRLKSKGQIPNSKH 715
PLQPKHMREAVRRLKSKGQIPNSKH
Sbjct: 181 PLQPKHMREAVRRLKSKGQIPNSKH 205
>ref|XP_863674.1| PREDICTED: similar to Transcription initiation factor TFIID subunit
11 (Transcription initiation factor TFIID 28 kDa
subunit) (TAF(II)28) (TAFII-28) (TAFII28) (TFIID subunit
p30-beta) isoform 2 [Canis familiaris].
Length = 211
Score = 315 bits (806), Expect = 5e-86
Identities = 164/205 (80%), Positives = 167/205 (81%)
Frame = +2
Query: 101 MDNACESPAEKSGETGEADEMAAAPGAPGVTDTDGIPEETDGDGDGDLKETAAEEGELKS 280
MDNACESP EK GE E+DE A APG PG TDTDGIPEETD DGDGDLKE AE+GE +
Sbjct: 1 MDNACESPTEKGGEARESDETAPAPGVPGPTDTDGIPEETDVDGDGDLKEATAEDGEFVN 60
Query: 281 QDISDLTAVEREDSSLLAPAAXXXXXXXXXXXXXXXXXXXXXXXXMQILVSSFSEEQLNR 460
QDISDLTAVEREDSSLL PAA MQILVSSFSEEQLNR
Sbjct: 61 QDISDLTAVEREDSSLLTPAAKKIKIDTKEKKEKKQKVDEDEIQKMQILVSSFSEEQLNR 120
Query: 461 YEMYRRSAFPKAAIKRLIQSITGTSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMP 640
YEMYRRSAFPKAAIKRLIQSITGTSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMP
Sbjct: 121 YEMYRRSAFPKAAIKRLIQSITGTSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMP 180
Query: 641 PLQPKHMREAVRRLKSKGQIPNSKH 715
PLQPKHMREAVRRLKSKGQIPNSKH
Sbjct: 181 PLQPKHMREAVRRLKSKGQIPNSKH 205
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 32,614,446
Number of extensions: 756212
Number of successful extensions: 3089
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3065
Number of HSP's successfully gapped: 2
Length of query: 324
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 221
Effective length of database: 15,440,896
Effective search space: 3412438016
Effective search space used: 3412438016
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003023
(974 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_005634.1| transcription initiation factor TFIID subunit 1... 314 7e-86
Alignment gi|XP_373076.5| PREDICTED: putative TAF11-like protein ENSP0000... 184 1e-46
Alignment gi|XP_001713978.3| PREDICTED: putative TAF11-like protein ENSP0... 184 1e-46
Alignment gi|XP_373077.2| PREDICTED: putative TAF11-like protein ENSP0000... 182 5e-46
Alignment gi|XP_377884.3| PREDICTED: putative TAF11-like protein ENSP0000... 179 3e-45
Alignment gi|XP_001131099.2| PREDICTED: putative TAF11-like protein ENSP0... 179 3e-45
Alignment gi|XP_001131091.1| PREDICTED: putative TAF11-like protein ENSP0... 179 3e-45
Alignment gi|XP_001131132.1| PREDICTED: putative TAF11-like protein ENSP0... 179 3e-45
Alignment gi|XP_001715084.1| PREDICTED: putative TAF11-like protein ENSP0... 179 4e-45
Alignment gi|XP_373078.1| PREDICTED: putative TAF11-like protein ENSP0000... 172 5e-43
>ref|NP_005634.1| transcription initiation factor TFIID subunit 11 [Homo sapiens].
Length = 211
Score = 314 bits (805), Expect = 7e-86
Identities = 164/205 (80%), Positives = 170/205 (82%)
Frame = +2
Query: 101 MDNACESPAEKSGETGEADEMAAAPGAPGVTDTDGIPEETDGDGDGDLKETAAEEGELKS 280
MD+A ESP++K GETGE+DE AA PG PG TDTDGIPEETDGD D DLKE AAEEGEL+S
Sbjct: 1 MDDAHESPSDKGGETGESDETAAVPGDPGATDTDGIPEETDGDADVDLKEAAAEEGELES 60
Query: 281 QDISDLTAVEREDSSLLAPAAXXXXXXXXXXXXXXXXXXXXXXXXMQILVSSFSEEQLNR 460
QD+SDLT VEREDSSLL PAA MQILVSSFSEEQLNR
Sbjct: 61 QDVSDLTTVEREDSSLLNPAAKKLKIDTKEKKEKKQKVDEDEIQKMQILVSSFSEEQLNR 120
Query: 461 YEMYRRSAFPKAAIKRLIQSITGTSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMP 640
YEMYRRSAFPKAAIKRLIQSITGTSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMP
Sbjct: 121 YEMYRRSAFPKAAIKRLIQSITGTSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMP 180
Query: 641 PLQPKHMREAVRRLKSKGQIPNSKH 715
PLQPKHMREAVRRLKSKGQIPNSKH
Sbjct: 181 PLQPKHMREAVRRLKSKGQIPNSKH 205
>ref|XP_373076.5| PREDICTED: putative TAF11-like protein ENSP00000332601-like [Homo
sapiens].
Length = 259
Score = 184 bits (466), Expect = 1e-46
Identities = 113/239 (47%), Positives = 139/239 (58%), Gaps = 5/239 (2%)
Frame = +2
Query: 14 QEVSSWAAVLRGVPSS*ALDVLSPLLLTAMDNACE-----SPAEKSGETGEADEMAAAPG 178
Q S AAV VP+ + +P +A A SP E + + EM P
Sbjct: 20 QVCSVTAAVQAEVPAGVIHNRTTPARTSACTAAVTEQTGISPMETGRQRDASAEMFPMPR 79
Query: 179 APGVTDTDGIPEETDGDGDGDLKETAAEEGELKSQDISDLTAVEREDSSLLAPAAXXXXX 358
++ DGIPE D DG+L+E +E EL+SQD+ DLT + E S+ P+A
Sbjct: 80 GLKYSNKDGIPE----DLDGNLEEPRDQESELRSQDVMDLTEGDNEASASTPPSAKRQKT 135
Query: 359 XXXXXXXXXXXXXXXXXXXMQILVSSFSEEQLNRYEMYRRSAFPKAAIKRLIQSITGTSV 538
M L S+ SEEQL+RYE+ RRSAFPKA I L+QSITG SV
Sbjct: 136 DTKGKKERKPTMDAEEAQRMTTLFSAMSEEQLSRYEVCRRSAFPKARIAALMQSITGRSV 195
Query: 539 SQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMPPLQPKHMREAVRRLKSKGQIPNSKH 715
S+N IAM+GI+KVFVGEVVEEALDVCE WGE PPLQPKH+REAVRRLK KG +PNS +
Sbjct: 196 SENTAIAMAGIAKVFVGEVVEEALDVCEMWGETPPLQPKHLREAVRRLKPKGILPNSNY 254
>ref|XP_001713978.3| PREDICTED: putative TAF11-like protein ENSP00000332601-like [Homo
sapiens].
Length = 251
Score = 184 bits (466), Expect = 1e-46
Identities = 103/199 (51%), Positives = 125/199 (62%)
Frame = +2
Query: 119 SPAEKSGETGEADEMAAAPGAPGVTDTDGIPEETDGDGDGDLKETAAEEGELKSQDISDL 298
SP E + + EM P ++ DGIPE D DG+L+E +E EL+SQD+ DL
Sbjct: 52 SPMETGRQRDASAEMFPMPRGLKYSNKDGIPE----DLDGNLEEPRDQESELRSQDVMDL 107
Query: 299 TAVEREDSSLLAPAAXXXXXXXXXXXXXXXXXXXXXXXXMQILVSSFSEEQLNRYEMYRR 478
T + E S+ P+A M L S+ SEEQL+RYE+ RR
Sbjct: 108 TEGDNEASASTPPSAKRQKTDTKGKKERKPTMDAEEAQRMTTLFSAMSEEQLSRYEVCRR 167
Query: 479 SAFPKAAIKRLIQSITGTSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMPPLQPKH 658
SAFPKA I L+QSITG SVS+N IAM+GI+KVFVGEVVEEALDVCE WGE PPLQPKH
Sbjct: 168 SAFPKARIAALMQSITGRSVSENTAIAMAGIAKVFVGEVVEEALDVCEMWGETPPLQPKH 227
Query: 659 MREAVRRLKSKGQIPNSKH 715
+REAVRRLK KG +PNS +
Sbjct: 228 LREAVRRLKPKGLLPNSNY 246
>ref|XP_373077.2| PREDICTED: putative TAF11-like protein ENSP00000332601-like [Homo
sapiens].
Length = 198
Score = 182 bits (461), Expect = 5e-46
Identities = 101/196 (51%), Positives = 126/196 (64%)
Frame = +2
Query: 128 EKSGETGEADEMAAAPGAPGVTDTDGIPEETDGDGDGDLKETAAEEGELKSQDISDLTAV 307
E +TG + EM A P + DGIPE D DG+L+E +EGEL+S+D+ DLT
Sbjct: 2 ETGRQTGVSAEMLAMPRGLKGSKKDGIPE----DLDGNLEEPRDQEGELRSEDVMDLTEG 57
Query: 308 EREDSSLLAPAAXXXXXXXXXXXXXXXXXXXXXXXXMQILVSSFSEEQLNRYEMYRRSAF 487
+ E S+ PAA M L+S+ SEEQL+RYE+ RRSAF
Sbjct: 58 DSEASASAPPAAKRRKTHTKRKKERKPTVDAEEAQRMTTLLSAMSEEQLSRYEVCRRSAF 117
Query: 488 PKAAIKRLIQSITGTSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMPPLQPKHMRE 667
P+A I L++SITG+SVS+N IAM+GI+KVFVGEVVEEALD+CE WGE PPLQPKH+RE
Sbjct: 118 PRARIAGLMRSITGSSVSENAAIAMAGIAKVFVGEVVEEALDMCEMWGETPPLQPKHLRE 177
Query: 668 AVRRLKSKGQIPNSKH 715
AV RLK KG PNS +
Sbjct: 178 AVHRLKPKGLFPNSNY 193
>ref|XP_377884.3| PREDICTED: putative TAF11-like protein ENSP00000332601-like [Homo
sapiens].
Length = 198
Score = 179 bits (454), Expect = 3e-45
Identities = 99/194 (51%), Positives = 125/194 (64%)
Frame = +2
Query: 128 EKSGETGEADEMAAAPGAPGVTDTDGIPEETDGDGDGDLKETAAEEGELKSQDISDLTAV 307
E +TG + EM A P + DGIPE D DG+L+ +EGEL+S+D+ DLT
Sbjct: 2 ETGRQTGVSAEMLAMPRGLKGSKKDGIPE----DLDGNLEAPRDQEGELRSEDVMDLTEG 57
Query: 308 EREDSSLLAPAAXXXXXXXXXXXXXXXXXXXXXXXXMQILVSSFSEEQLNRYEMYRRSAF 487
+ E S+ PAA M L+S+ SEEQL+RYE+ RRSAF
Sbjct: 58 DSEASASAPPAAKRRKTHTKGKKESKPTVDAEEAQRMTTLLSAMSEEQLSRYEVCRRSAF 117
Query: 488 PKAAIKRLIQSITGTSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMPPLQPKHMRE 667
P+A + L+++ITG+SVS+N IAM+GI+K+FVGEVVEEALDVCE WGE PPLQPKH+RE
Sbjct: 118 PRARVAGLMRAITGSSVSENAAIAMAGIAKLFVGEVVEEALDVCEMWGETPPLQPKHLRE 177
Query: 668 AVRRLKSKGQIPNS 709
AVRRLK KG PNS
Sbjct: 178 AVRRLKPKGLFPNS 191
>ref|XP_001131099.2| PREDICTED: putative TAF11-like protein ENSP00000332601-like [Homo
sapiens].
Length = 198
Score = 179 bits (454), Expect = 3e-45
Identities = 99/194 (51%), Positives = 125/194 (64%)
Frame = +2
Query: 128 EKSGETGEADEMAAAPGAPGVTDTDGIPEETDGDGDGDLKETAAEEGELKSQDISDLTAV 307
E +TG + EM A P + DGIPE D DG+L+ +EGEL+S+D+ DLT
Sbjct: 2 ETGRQTGVSAEMLAMPRGLKGSKKDGIPE----DLDGNLEAPRDQEGELRSEDVMDLTEG 57
Query: 308 EREDSSLLAPAAXXXXXXXXXXXXXXXXXXXXXXXXMQILVSSFSEEQLNRYEMYRRSAF 487
+ E S+ PAA M L+S+ SEEQL+RYE+ RRSAF
Sbjct: 58 DSEASASAPPAAKRRKTHTKGKKESKPTVDAEEAQRMTTLLSAMSEEQLSRYEVCRRSAF 117
Query: 488 PKAAIKRLIQSITGTSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMPPLQPKHMRE 667
P+A + L+++ITG+SVS+N IAM+GI+K+FVGEVVEEALDVCE WGE PPLQPKH+RE
Sbjct: 118 PRARVAGLMRAITGSSVSENAAIAMAGIAKLFVGEVVEEALDVCEMWGETPPLQPKHLRE 177
Query: 668 AVRRLKSKGQIPNS 709
AVRRLK KG PNS
Sbjct: 178 AVRRLKPKGLFPNS 191
>ref|XP_001131091.1| PREDICTED: putative TAF11-like protein ENSP00000332601-like [Homo
sapiens].
Length = 198
Score = 179 bits (454), Expect = 3e-45
Identities = 99/194 (51%), Positives = 125/194 (64%)
Frame = +2
Query: 128 EKSGETGEADEMAAAPGAPGVTDTDGIPEETDGDGDGDLKETAAEEGELKSQDISDLTAV 307
E +TG + EM A P + DGIPE D DG+L+ +EGEL+S+D+ DLT
Sbjct: 2 ETGRQTGVSAEMLAMPRGLKGSKKDGIPE----DLDGNLEAPRDQEGELRSEDVMDLTEG 57
Query: 308 EREDSSLLAPAAXXXXXXXXXXXXXXXXXXXXXXXXMQILVSSFSEEQLNRYEMYRRSAF 487
+ E S+ PAA M L+S+ SEEQL+RYE+ RRSAF
Sbjct: 58 DSEASASAPPAAKRRKTHTKGKKESKPTVDAEEAQRMTTLLSAMSEEQLSRYEVCRRSAF 117
Query: 488 PKAAIKRLIQSITGTSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMPPLQPKHMRE 667
P+A + L+++ITG+SVS+N IAM+GI+K+FVGEVVEEALDVCE WGE PPLQPKH+RE
Sbjct: 118 PRARVAGLMRAITGSSVSENAAIAMAGIAKLFVGEVVEEALDVCEMWGETPPLQPKHLRE 177
Query: 668 AVRRLKSKGQIPNS 709
AVRRLK KG PNS
Sbjct: 178 AVRRLKPKGLFPNS 191
>ref|XP_001131132.1| PREDICTED: putative TAF11-like protein ENSP00000332601-like [Homo
sapiens].
Length = 198
Score = 179 bits (454), Expect = 3e-45
Identities = 99/194 (51%), Positives = 125/194 (64%)
Frame = +2
Query: 128 EKSGETGEADEMAAAPGAPGVTDTDGIPEETDGDGDGDLKETAAEEGELKSQDISDLTAV 307
E +TG + EM A P + DGIPE D DG+L+ +EGEL+S+D+ DLT
Sbjct: 2 ETGRQTGVSAEMLAMPRGLKGSKKDGIPE----DLDGNLEAPRDQEGELRSEDVMDLTEG 57
Query: 308 EREDSSLLAPAAXXXXXXXXXXXXXXXXXXXXXXXXMQILVSSFSEEQLNRYEMYRRSAF 487
+ E S+ PAA M L+S+ SEEQL+RYE+ RRSAF
Sbjct: 58 DSEASASAPPAAKRRKTHTKGKKESKPTVDAEEAQRMTTLLSAMSEEQLSRYEVCRRSAF 117
Query: 488 PKAAIKRLIQSITGTSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMPPLQPKHMRE 667
P+A + L+++ITG+SVS+N IAM+GI+K+FVGEVVEEALDVCE WGE PPLQPKH+RE
Sbjct: 118 PRARVAGLMRAITGSSVSENAAIAMAGIAKLFVGEVVEEALDVCEMWGETPPLQPKHLRE 177
Query: 668 AVRRLKSKGQIPNS 709
AVRRLK KG PNS
Sbjct: 178 AVRRLKPKGLFPNS 191
>ref|XP_001715084.1| PREDICTED: putative TAF11-like protein ENSP00000332601-like [Homo
sapiens].
Length = 198
Score = 179 bits (453), Expect = 4e-45
Identities = 100/196 (51%), Positives = 125/196 (63%)
Frame = +2
Query: 128 EKSGETGEADEMAAAPGAPGVTDTDGIPEETDGDGDGDLKETAAEEGELKSQDISDLTAV 307
E +TG + EM A P + DGIPE D DG+L+E +EGEL+S+D+ DLT
Sbjct: 2 ETGRQTGVSAEMLAMPRGLKGSKKDGIPE----DLDGNLEEPRDQEGELRSEDVMDLTEG 57
Query: 308 EREDSSLLAPAAXXXXXXXXXXXXXXXXXXXXXXXXMQILVSSFSEEQLNRYEMYRRSAF 487
+ E S+ PAA M L+S+ SEEQL+RYE+ R SAF
Sbjct: 58 DSEASASAPPAAKRRKTHTKRKKESKPTVDAEEAQRMTTLLSAMSEEQLSRYEVCRWSAF 117
Query: 488 PKAAIKRLIQSITGTSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMPPLQPKHMRE 667
P+A I L++SITG+SVS+N IAM+GI+KVFVGEVVEEALD+CE WGE PPLQPKH+RE
Sbjct: 118 PRARIAGLMRSITGSSVSENAAIAMAGIAKVFVGEVVEEALDMCEMWGETPPLQPKHLRE 177
Query: 668 AVRRLKSKGQIPNSKH 715
AV RLK KG PNS +
Sbjct: 178 AVHRLKPKGLFPNSNY 193
>ref|XP_373078.1| PREDICTED: putative TAF11-like protein ENSP00000332601-like [Homo
sapiens].
Length = 197
Score = 172 bits (435), Expect = 5e-43
Identities = 97/194 (50%), Positives = 122/194 (62%)
Frame = +2
Query: 128 EKSGETGEADEMAAAPGAPGVTDTDGIPEETDGDGDGDLKETAAEEGELKSQDISDLTAV 307
E +TG + EM A P + DGIPE DG+ L+E A+E EL+S+D+ DLT V
Sbjct: 2 ETGRQTGVSAEMFAIPRGLKGCNEDGIPEALDGN----LEEPRAQECELRSEDVMDLTVV 57
Query: 308 EREDSSLLAPAAXXXXXXXXXXXXXXXXXXXXXXXXMQILVSSFSEEQLNRYEMYRRSAF 487
+ E S+ PAA M L+S+ SEEQL+RYE+ R+ AF
Sbjct: 58 DNEASASAPPAAKRQKTDTKGQKERKPSVDAEEAQRMTTLLSAMSEEQLSRYEVCRQLAF 117
Query: 488 PKAAIKRLIQSITGTSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMPPLQPKHMRE 667
PKA + RL+ SITG SV +N+ IAM+GI+KVFVGEVVEEALD+CE WGEMPPLQP +RE
Sbjct: 118 PKALVARLMWSITGRSVPENMAIAMAGIAKVFVGEVVEEALDMCEMWGEMPPLQPMDLRE 177
Query: 668 AVRRLKSKGQIPNS 709
AV RLK KG PN+
Sbjct: 178 AVCRLKPKGLFPNN 191
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 32,043,531
Number of extensions: 746297
Number of successful extensions: 3158
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 3108
Number of HSP's successfully gapped: 13
Length of query: 324
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 221
Effective length of database: 14,901,872
Effective search space: 3293313712
Effective search space used: 3293313712
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003023
(974 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_081112.1| transcription initiation factor TFIID subunit 1... 295 5e-80
>ref|NP_081112.1| transcription initiation factor TFIID subunit 11 [Mus musculus].
Length = 211
Score = 295 bits (754), Expect = 5e-80
Identities = 155/205 (75%), Positives = 162/205 (79%)
Frame = +2
Query: 101 MDNACESPAEKSGETGEADEMAAAPGAPGVTDTDGIPEETDGDGDGDLKETAAEEGELKS 280
MDN ESP +K GE GE++E A PGA DT+GIPEETD DGD DLKE AAEE ELKS
Sbjct: 1 MDNLGESPTDKGGEPGESEETRATPGALVAADTEGIPEETDRDGDADLKEAAAEESELKS 60
Query: 281 QDISDLTAVEREDSSLLAPAAXXXXXXXXXXXXXXXXXXXXXXXXMQILVSSFSEEQLNR 460
QD+SD+TA ERE+SSLL PAA MQILVSSFSEEQLNR
Sbjct: 61 QDVSDVTAAERENSSLLTPAAKKLKLDIKDKKEKKQKVDEDEIQKMQILVSSFSEEQLNR 120
Query: 461 YEMYRRSAFPKAAIKRLIQSITGTSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMP 640
YEMYRRSAFPKAAIKRLIQSITGTSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGE P
Sbjct: 121 YEMYRRSAFPKAAIKRLIQSITGTSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGETP 180
Query: 641 PLQPKHMREAVRRLKSKGQIPNSKH 715
PLQPKHMREAVRRLKSKGQIPNSKH
Sbjct: 181 PLQPKHMREAVRRLKSKGQIPNSKH 205
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 27,232,409
Number of extensions: 630300
Number of successful extensions: 2503
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2479
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 222
Effective length of database: 12,553,887
Effective search space: 2786962914
Effective search space used: 2786962914
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003023
(974 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001171823.1| transcription initiation factor TFIID subuni... 347 6e-96
>ref|NP_001171823.1| transcription initiation factor TFIID subunit 11 [Sus scrofa].
Length = 211
Score = 347 bits (890), Expect = 6e-96
Identities = 181/205 (88%), Positives = 181/205 (88%)
Frame = +2
Query: 101 MDNACESPAEKSGETGEADEMAAAPGAPGVTDTDGIPEETDGDGDGDLKETAAEEGELKS 280
MDNACESPAEKSGETGEADEMAAAPGAPGVTDTDGIPEETDGDGDGDLKETAAEEGELKS
Sbjct: 1 MDNACESPAEKSGETGEADEMAAAPGAPGVTDTDGIPEETDGDGDGDLKETAAEEGELKS 60
Query: 281 QDISDLTAVEREDSSLLAPAAXXXXXXXXXXXXXXXXXXXXXXXXMQILVSSFSEEQLNR 460
QDISDLTAVEREDSSLLAPAA MQILVSSFSEEQLNR
Sbjct: 61 QDISDLTAVEREDSSLLAPAAKKLKIDTKEKKEKKQKVDEDEIQKMQILVSSFSEEQLNR 120
Query: 461 YEMYRRSAFPKAAIKRLIQSITGTSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMP 640
YEMYRRSAFPKAAIKRLIQSITGTSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMP
Sbjct: 121 YEMYRRSAFPKAAIKRLIQSITGTSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMP 180
Query: 641 PLQPKHMREAVRRLKSKGQIPNSKH 715
PLQPKHMREAVRRLKSKGQIPNSKH
Sbjct: 181 PLQPKHMREAVRRLKSKGQIPNSKH 205
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 20,095,380
Number of extensions: 468984
Number of successful extensions: 1925
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1915
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 225
Effective length of database: 8,879,129
Effective search space: 1997804025
Effective search space used: 1997804025
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003023
(974 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr07 670 0.0
>Sscrofa_Chr07
|| Length = 134764511
Score = 670 bits (338), Expect = 0.0
Identities = 361/371 (97%)
Strand = Plus / Minus
Query: 604 agcactggatgtgtgtgagaagtggggagaaatgccaccactacaaccgaaacatatgag 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35544360 agcactggatgtgtgtgagaagtggggagaaatgccaccactacaaccgaaacatatgag 35544301
Query: 664 ggaggctgttcgaaggttaaagtcgaaggggcagattcccaactcaaagcacnnnnnnnt 723
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 35544300 ggaggctgttcgaaggttaaagtcgaaggggcagattcccaactcaaagcacaaaaaaat 35544241
Query: 724 catcttcttttagactgaaatctagaaagacctattactgacggaagaagtgctggttcc 783
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35544240 catcttcttttagactgaaatctagaaagacctattactgacggaagaagtgctggttcc 35544181
Query: 784 aggcttcgtattgcatgagactttctgcactggtgctttagtatctcagtcctccaagga 843
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35544180 aggcttcgtattgcatgagactttctgcactggtgctttagtatctcagtcctccaagga 35544121
Query: 844 ttccatgatgttttaatgtctttctcaaactctgatattcattacacctagaagaaggca 903
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35544120 ttccatgatgttttaatgtctttctcaaactctgatattcattacacctagaagaaggca 35544061
Query: 904 tgcagcctgttgccttgacttgggacccctgaaggcccgtgaaggcatccagctcttact 963
|||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct: 35544060 tgcagcctgttgccttgacttgggacccctgagggccgttgaaggcatccagctcttact 35544001
Query: 964 ggctagtttga 974
|||||||||||
Sbjct: 35544000 ggctagtttga 35543990
Score = 531 bits (268), Expect = e-148
Identities = 268/268 (100%)
Strand = Plus / Minus
Query: 4 aacgcgacgacaggaagtgagctcctgggctgctgtgctgcgcggggtcccgagctccta 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35555306 aacgcgacgacaggaagtgagctcctgggctgctgtgctgcgcggggtcccgagctccta 35555247
Query: 64 agccctcgatgtcctttcccctctccttctgaccgcgatggataatgcttgcgagtcgcc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35555246 agccctcgatgtcctttcccctctccttctgaccgcgatggataatgcttgcgagtcgcc 35555187
Query: 124 cgcggaaaaaagtggagaaacaggggaggcagatgagatggctgctgctcccggggctcc 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35555186 cgcggaaaaaagtggagaaacaggggaggcagatgagatggctgctgctcccggggctcc 35555127
Query: 184 cggggttacggacacggacggaatcccggaggaaacggatggagacggagatggggactt 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35555126 cggggttacggacacggacggaatcccggaggaaacggatggagacggagatggggactt 35555067
Query: 244 gaaagaaaccgcggctgaagaaggcgag 271
||||||||||||||||||||||||||||
Sbjct: 35555066 gaaagaaaccgcggctgaagaaggcgag 35555039
Score = 194 bits (98), Expect = 6e-47
Identities = 98/98 (100%)
Strand = Plus / Minus
Query: 508 gctgatccagtctatcactggcacctctgtgtctcagaatgttgttattgcaatgtctgg 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35546325 gctgatccagtctatcactggcacctctgtgtctcagaatgttgttattgcaatgtctgg 35546266
Query: 568 tatttccaaagttttcgtcggggaggtcgtagaagaag 605
||||||||||||||||||||||||||||||||||||||
Sbjct: 35546265 tatttccaaagttttcgtcggggaggtcgtagaagaag 35546228
Score = 170 bits (86), Expect = 9e-40
Identities = 86/86 (100%)
Strand = Plus / Minus
Query: 423 tcctggtttcttctttttctgaggagcagctgaaccgttatgagatgtaccgccggtcag 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35546768 tcctggtttcttctttttctgaggagcagctgaaccgttatgagatgtaccgccggtcag 35546709
Query: 483 ccttccccaaggcagccattaaaagg 508
||||||||||||||||||||||||||
Sbjct: 35546708 ccttccccaaggcagccattaaaagg 35546683
Score = 147 bits (74), Expect = 1e-32
Identities = 74/74 (100%)
Strand = Plus / Minus
Query: 270 agctcaagagtcaggatatctcagatttaacagcagttgaaagagaagactcatcgttac 329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35549901 agctcaagagtcaggatatctcagatttaacagcagttgaaagagaagactcatcgttac 35549842
Query: 330 ttgctcctgcagcc 343
||||||||||||||
Sbjct: 35549841 ttgctcctgcagcc 35549828
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 25,101,040
Number of extensions: 148
Number of successful extensions: 148
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 147
Number of HSP's successfully gapped: 5
Length of query: 974
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 953
Effective length of database: 2,808,413,156
Effective search space: 2676417737668
Effective search space used: 2676417737668
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)