Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003078
(1471 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_848667.1| carbonic anhydrase 2 [Bos taurus]. 445 e-125
Alignment gi|XP_002692875.1| PREDICTED: carbonic anhydrase XIII [Bos taur... 330 2e-90
Alignment gi|NP_001179451.1| carbonic anhydrase 7 [Bos taurus]. 325 6e-89
Alignment gi|XP_002694851.1| PREDICTED: carbonic anhydrase VII-like [Bos ... 325 6e-89
Alignment gi|NP_001068934.1| carbonic anhydrase 1 [Bos taurus]. 315 7e-86
Alignment gi|NP_001029609.1| carbonic anhydrase 3 [Bos taurus]. 314 1e-85
Alignment gi|XP_002692874.1| PREDICTED: carbonic anhydrase 1-like [Bos ta... 313 2e-85
Alignment gi|XP_001250684.1| PREDICTED: carbonic anhydrase 1-like [Bos ta... 313 2e-85
Alignment gi|NP_001074377.2| carbonic anhydrase 5B, mitochondrial [Bos ta... 281 1e-75
Alignment gi|NP_001179338.1| carbonic anhydrase 5A, mitochondrial [Bos ta... 250 3e-66
>ref|NP_848667.1| carbonic anhydrase 2 [Bos taurus].
Length = 260
Score = 445 bits (1144), Expect = e-125
Identities = 205/256 (80%), Positives = 225/256 (87%)
Frame = +2
Query: 230 MSHHWGYDKHNGPEHWHKDFPIAKGDRQSPVDINTSTAVHDPALKPLSLCYEQATSQRIV 409
MSHHWGY KHNGPEHWHKDFPIA G+RQSPVDI+T V DPALKPL+L Y +ATS+R+V
Sbjct: 1 MSHHWGYGKHNGPEHWHKDFPIANGERQSPVDIDTKAVVQDPALKPLALVYGEATSRRMV 60
Query: 410 NNGHSFNVEFDSSQDKGVLEGGPLAGTYRLIQFHFHWGSSDGQGSEHTVDKKKYAAELHL 589
NNGHSFNVE+D SQDK VL+ GPL GTYRL+QFHFHWGSSD QGSEHTVD+KKYAAELHL
Sbjct: 61 NNGHSFNVEYDDSQDKAVLKDGPLTGTYRLVQFHFHWGSSDDQGSEHTVDRKKYAAELHL 120
Query: 590 VHWNTKYKDFGEAAQQPDGLAVLGVFLKIGNAQPGLQKIVDVLDSIKTKGKSVEFTGFDP 769
VHWNTKY DFG AAQQPDGLAV+GVFLK+G+A P LQK++D LDSIKTKGKS +F FDP
Sbjct: 121 VHWNTKYGDFGTAAQQPDGLAVVGVFLKVGDANPALQKVLDALDSIKTKGKSTDFPNFDP 180
Query: 770 RDLLPGSLDYWTYPGSLTTPPLLESVTWIVLREPISVSSGQMMKFRTLNFNKEGEPEHPM 949
LLP LDYWTYPGSLTTPPLLESVTWIVL+EPISVSS QM+KFRTLNFN EGEPE M
Sbjct: 181 GSLLPNVLDYWTYPGSLTTPPLLESVTWIVLKEPISVSSQQMLKFRTLNFNAEGEPELLM 240
Query: 950 VDNWRPTQPLKNRQIR 997
+ NWRP QPLKNRQ+R
Sbjct: 241 LANWRPAQPLKNRQVR 256
>ref|XP_002692875.1| PREDICTED: carbonic anhydrase XIII [Bos taurus].
Length = 262
Score = 330 bits (846), Expect = 2e-90
Identities = 154/257 (59%), Positives = 195/257 (75%), Gaps = 1/257 (0%)
Frame = +2
Query: 242 WGYDKHNGPEHWHKDFPIAKGDRQSPVDINTSTAVHDPALKPLSLCYEQATSQRIVNNGH 421
WGY + +GP HW++ FPIA GD+QSP++I T +D +L+PL + Y+ ++++ I N+GH
Sbjct: 6 WGYGERDGPVHWNEFFPIADGDQQSPIEIKTKEVRYDSSLRPLGIKYDASSAKIISNSGH 65
Query: 422 SFNVEFDSSQDKGVLEGGPLAGTYRLIQFHFHWGSSDGQGSEHTVDKKKYAAELHLVHWN 601
SFNV+FD + DK VL GGPL G+YRL QFH HWGS+D GSEH VD +YAAELH+VHWN
Sbjct: 66 SFNVDFDDTDDKSVLRGGPLTGSYRLRQFHLHWGSTDDHGSEHVVDGVRYAAELHVVHWN 125
Query: 602 T-KYKDFGEAAQQPDGLAVLGVFLKIGNAQPGLQKIVDVLDSIKTKGKSVEFTGFDPRDL 778
+ KY F EAA +PDGLAVLG+FL+IG P LQKI D+LDSIK KGK FT FDP L
Sbjct: 126 SDKYPSFVEAAHEPDGLAVLGIFLQIGEHNPQLQKITDILDSIKEKGKQTRFTNFDPVCL 185
Query: 779 LPGSLDYWTYPGSLTTPPLLESVTWIVLREPISVSSGQMMKFRTLNFNKEGEPEHPMVDN 958
LP DYWTYPGSLT PPLLESVTWI+L++PI++SS Q+ FRTL ++EGE ++ N
Sbjct: 186 LPPCRDYWTYPGSLTVPPLLESVTWIILKQPINISSQQLAAFRTLLCSREGETAAFLLSN 245
Query: 959 WRPTQPLKNRQIRASFQ 1009
RP QPLK R++RASF+
Sbjct: 246 HRPPQPLKGRKVRASFR 262
>ref|NP_001179451.1| carbonic anhydrase 7 [Bos taurus].
Length = 264
Score = 325 bits (833), Expect = 6e-89
Identities = 153/262 (58%), Positives = 190/262 (72%), Gaps = 1/262 (0%)
Frame = +2
Query: 227 TMSHHWGYDKHNGPEHWHKDFPIAKGDRQSPVDINTSTAVHDPALKPLSLCYEQATSQRI 406
T H WGY +++GP HWHK +PIA+GDRQSP++I +S AV+ P+LKPL + YE TS I
Sbjct: 2 TGHHGWGYGQNDGPSHWHKLYPIAQGDRQSPINIVSSQAVYSPSLKPLEISYESCTSLSI 61
Query: 407 VNNGHSFNVEFDSSQDKGVLEGGPLAGTYRLIQFHFHWGSSDGQGSEHTVDKKKYAAELH 586
NNGHS V+F+ S D+ V+ GGPL G YRL QFHFHWG G GSEHTVD K + +ELH
Sbjct: 62 ANNGHSVQVDFNDSDDRTVVSGGPLDGPYRLKQFHFHWGKKHGVGSEHTVDGKSFPSELH 121
Query: 587 LVHWNT-KYKDFGEAAQQPDGLAVLGVFLKIGNAQPGLQKIVDVLDSIKTKGKSVEFTGF 763
LVHWN KY FGEAA PDGLAV+GVFL+ G+ P + ++ D L ++ KG +F+ F
Sbjct: 122 LVHWNAKKYSTFGEAASAPDGLAVVGVFLETGDEHPSMNRLTDALYMVRFKGTKAQFSCF 181
Query: 764 DPRDLLPGSLDYWTYPGSLTTPPLLESVTWIVLREPISVSSGQMMKFRTLNFNKEGEPEH 943
+P+ LLP S YWTYPGSLTTPPL ESVTWIVLREPI +S QM KFR+L F E +
Sbjct: 182 NPKCLLPASRHYWTYPGSLTTPPLSESVTWIVLREPIRISERQMEKFRSLLFTSEEDERI 241
Query: 944 PMVDNWRPTQPLKNRQIRASFQ 1009
MV+N+RP QPLK R ++ASF+
Sbjct: 242 HMVNNFRPPQPLKGRVVKASFR 263
>ref|XP_002694851.1| PREDICTED: carbonic anhydrase VII-like [Bos taurus].
Length = 264
Score = 325 bits (833), Expect = 6e-89
Identities = 153/262 (58%), Positives = 190/262 (72%), Gaps = 1/262 (0%)
Frame = +2
Query: 227 TMSHHWGYDKHNGPEHWHKDFPIAKGDRQSPVDINTSTAVHDPALKPLSLCYEQATSQRI 406
T H WGY +++GP HWHK +PIA+GDRQSP++I +S AV+ P+LKPL + YE TS I
Sbjct: 2 TGHHGWGYGQNDGPSHWHKLYPIAQGDRQSPINIVSSQAVYSPSLKPLEISYESCTSLSI 61
Query: 407 VNNGHSFNVEFDSSQDKGVLEGGPLAGTYRLIQFHFHWGSSDGQGSEHTVDKKKYAAELH 586
NNGHS V+F+ S D+ V+ GGPL G YRL QFHFHWG G GSEHTVD K + +ELH
Sbjct: 62 ANNGHSVQVDFNDSDDRTVVSGGPLDGPYRLKQFHFHWGKKHGVGSEHTVDGKSFPSELH 121
Query: 587 LVHWNT-KYKDFGEAAQQPDGLAVLGVFLKIGNAQPGLQKIVDVLDSIKTKGKSVEFTGF 763
LVHWN KY FGEAA PDGLAV+GVFL+ G+ P + ++ D L ++ KG +F+ F
Sbjct: 122 LVHWNAKKYSTFGEAASAPDGLAVVGVFLETGDEHPSMNRLTDALYMVRFKGTKAQFSCF 181
Query: 764 DPRDLLPGSLDYWTYPGSLTTPPLLESVTWIVLREPISVSSGQMMKFRTLNFNKEGEPEH 943
+P+ LLP S YWTYPGSLTTPPL ESVTWIVLREPI +S QM KFR+L F E +
Sbjct: 182 NPKCLLPASRHYWTYPGSLTTPPLSESVTWIVLREPIRISERQMEKFRSLLFTSEEDERI 241
Query: 944 PMVDNWRPTQPLKNRQIRASFQ 1009
MV+N+RP QPLK R ++ASF+
Sbjct: 242 HMVNNFRPPQPLKGRVVKASFR 263
>ref|NP_001068934.1| carbonic anhydrase 1 [Bos taurus].
Length = 261
Score = 315 bits (807), Expect = 7e-86
Identities = 151/259 (58%), Positives = 187/259 (72%), Gaps = 1/259 (0%)
Frame = +2
Query: 233 SHHWGYDKHNGPEHWHKDFPIAKGDRQSPVDINTSTAVHDPALKPLSLCYEQATSQRIVN 412
S WGYD NGPEHW K +PIA G+ QSP+DI TS DP+LKPLS+ Y AT++ IVN
Sbjct: 3 SPDWGYDGENGPEHWGKLYPIANGNNQSPIDIKTSETKRDPSLKPLSVSYNPATAKEIVN 62
Query: 413 NGHSFNVEFDSSQDKGVLEGGPLAGTYRLIQFHFHWGSSDGQGSEHTVDKKKYAAELHLV 592
GHSF+V F+ S ++ VL+GGPL+ +YRL QFHFHWG +D GSEH VD K++AELHLV
Sbjct: 63 VGHSFHVNFEDSDNRSVLKGGPLSESYRLRQFHFHWGITDDCGSEHLVDGAKFSAELHLV 122
Query: 593 HWNT-KYKDFGEAAQQPDGLAVLGVFLKIGNAQPGLQKIVDVLDSIKTKGKSVEFTGFDP 769
HWN+ KY F +AA Q DGLA++GV +K+G A P LQK++D L ++K K K FT FDP
Sbjct: 123 HWNSAKYPSFADAASQADGLALIGVLVKVGQANPNLQKVLDALKAVKNKNKKAPFTNFDP 182
Query: 770 RDLLPGSLDYWTYPGSLTTPPLLESVTWIVLREPISVSSGQMMKFRTLNFNKEGEPEHPM 949
LLP SLDYW Y GSLT PPL ESVTWI+ +E ISVSS Q+ +FR+L N EG+ E +
Sbjct: 183 SVLLPPSLDYWAYSGSLTHPPLHESVTWIIFKETISVSSEQLAQFRSLLANAEGDREVHI 242
Query: 950 VDNWRPTQPLKNRQIRASF 1006
N RP QPL R ++ASF
Sbjct: 243 KQNNRPPQPLNGRTVKASF 261
>ref|NP_001029609.1| carbonic anhydrase 3 [Bos taurus].
Length = 260
Score = 314 bits (804), Expect = 1e-85
Identities = 142/260 (54%), Positives = 182/260 (70%)
Frame = +2
Query: 230 MSHHWGYDKHNGPEHWHKDFPIAKGDRQSPVDINTSTAVHDPALKPLSLCYEQATSQRIV 409
M+ WGY HNGP+HWH+ FP AKG+ QSP+++NT HDP+LKP + Y+ +++ I+
Sbjct: 1 MAKEWGYADHNGPDHWHELFPNAKGENQSPIELNTKEISHDPSLKPWTASYDPGSAKTIL 60
Query: 410 NNGHSFNVEFDSSQDKGVLEGGPLAGTYRLIQFHFHWGSSDGQGSEHTVDKKKYAAELHL 589
NNG + V FD + D+ +L GGPLA YRL QFH HWGSSD GSEH+VD KYAAELHL
Sbjct: 61 NNGKTCRVVFDDTYDRSMLRGGPLAAPYRLRQFHLHWGSSDDHGSEHSVDGVKYAAELHL 120
Query: 590 VHWNTKYKDFGEAAQQPDGLAVLGVFLKIGNAQPGLQKIVDVLDSIKTKGKSVEFTGFDP 769
VHWN+KY + A + DG+AV+GVFLKIG + Q ++D LD IKTKGK F F+P
Sbjct: 121 VHWNSKYNSYATALKHADGIAVVGVFLKIGREKGEFQLLLDALDKIKTKGKEAPFNNFNP 180
Query: 770 RDLLPGSLDYWTYPGSLTTPPLLESVTWIVLREPISVSSGQMMKFRTLNFNKEGEPEHPM 949
L P DYWTY GS TTPP E + W++L+EPI+VSS Q+ K RTL + E EP P+
Sbjct: 181 SCLFPACRDYWTYHGSFTTPPCEECIVWLLLKEPITVSSDQIAKLRTLYSSAENEPPVPL 240
Query: 950 VDNWRPTQPLKNRQIRASFQ 1009
V NWRP QP+K R ++ASF+
Sbjct: 241 VRNWRPPQPIKGRIVKASFK 260
>ref|XP_002692874.1| PREDICTED: carbonic anhydrase 1-like [Bos taurus].
Length = 261
Score = 313 bits (803), Expect = 2e-85
Identities = 150/259 (57%), Positives = 186/259 (71%), Gaps = 1/259 (0%)
Frame = +2
Query: 233 SHHWGYDKHNGPEHWHKDFPIAKGDRQSPVDINTSTAVHDPALKPLSLCYEQATSQRIVN 412
S WGYD NGPEHW K +PIA G+ QSP+DI TS DP+LKPLS+ Y AT++ IVN
Sbjct: 3 SPDWGYDGENGPEHWGKLYPIANGNNQSPIDIKTSETKRDPSLKPLSVSYNPATAKEIVN 62
Query: 413 NGHSFNVEFDSSQDKGVLEGGPLAGTYRLIQFHFHWGSSDGQGSEHTVDKKKYAAELHLV 592
GHSF+V F+ S ++ VL+GGPL+ +YRL QFHFHWG +D GSEH VD K++AELHLV
Sbjct: 63 VGHSFHVNFEDSDNRSVLKGGPLSESYRLRQFHFHWGITDDCGSEHLVDGAKFSAELHLV 122
Query: 593 HWNT-KYKDFGEAAQQPDGLAVLGVFLKIGNAQPGLQKIVDVLDSIKTKGKSVEFTGFDP 769
HWN+ KY F +AA + DGLA++GV +K+G A P LQK++D L ++K K K FT FDP
Sbjct: 123 HWNSAKYPSFADAASKADGLALIGVLVKVGQANPNLQKVLDALKAVKNKNKKAPFTNFDP 182
Query: 770 RDLLPGSLDYWTYPGSLTTPPLLESVTWIVLREPISVSSGQMMKFRTLNFNKEGEPEHPM 949
LLP SLDYW Y GSLT PPL ESVTWI+ +E IS SS Q+ +FR L N EG+ E +
Sbjct: 183 SVLLPPSLDYWAYSGSLTHPPLHESVTWIIFKETISASSEQLAQFRCLLANAEGDGELCI 242
Query: 950 VDNWRPTQPLKNRQIRASF 1006
N RP QPLK R ++ASF
Sbjct: 243 KQNHRPPQPLKGRTVKASF 261
>ref|XP_001250684.1| PREDICTED: carbonic anhydrase 1-like [Bos taurus].
Length = 261
Score = 313 bits (803), Expect = 2e-85
Identities = 150/259 (57%), Positives = 186/259 (71%), Gaps = 1/259 (0%)
Frame = +2
Query: 233 SHHWGYDKHNGPEHWHKDFPIAKGDRQSPVDINTSTAVHDPALKPLSLCYEQATSQRIVN 412
S WGYD NGPEHW K +PIA G+ QSP+DI TS DP+LKPLS+ Y AT++ IVN
Sbjct: 3 SPDWGYDGENGPEHWGKLYPIANGNNQSPIDIKTSETKRDPSLKPLSVSYNPATAKEIVN 62
Query: 413 NGHSFNVEFDSSQDKGVLEGGPLAGTYRLIQFHFHWGSSDGQGSEHTVDKKKYAAELHLV 592
GHSF+V F+ S ++ VL+GGPL+ +YRL QFHFHWG +D GSEH VD K++AELHLV
Sbjct: 63 VGHSFHVNFEDSDNRSVLKGGPLSESYRLRQFHFHWGITDDCGSEHLVDGAKFSAELHLV 122
Query: 593 HWNT-KYKDFGEAAQQPDGLAVLGVFLKIGNAQPGLQKIVDVLDSIKTKGKSVEFTGFDP 769
HWN+ KY F +AA + DGLA++GV +K+G A P LQK++D L ++K K K FT FDP
Sbjct: 123 HWNSAKYPSFADAASKADGLALIGVLVKVGQANPNLQKVLDALKAVKNKNKKAPFTNFDP 182
Query: 770 RDLLPGSLDYWTYPGSLTTPPLLESVTWIVLREPISVSSGQMMKFRTLNFNKEGEPEHPM 949
LLP SLDYW Y GSLT PPL ESVTWI+ +E IS SS Q+ +FR L N EG+ E +
Sbjct: 183 SVLLPPSLDYWAYSGSLTHPPLHESVTWIIFKETISASSEQLAQFRCLLANAEGDGELCI 242
Query: 950 VDNWRPTQPLKNRQIRASF 1006
N RP QPLK R ++ASF
Sbjct: 243 KQNHRPPQPLKGRTVKASF 261
>ref|NP_001074377.2| carbonic anhydrase 5B, mitochondrial [Bos taurus].
Length = 317
Score = 281 bits (719), Expect = 1e-75
Identities = 138/248 (55%), Positives = 172/248 (69%), Gaps = 1/248 (0%)
Frame = +2
Query: 275 WHKDFPIAKGDRQSPVDINTSTAVHDPALKPLSLCYEQATSQRIVNNGHSFNVEFDSSQD 454
W K G+RQSP++I +V+DP L+PL++ Y+ T + NNG+SF VEF+ S D
Sbjct: 52 WEKVDLAPAGERQSPINIRWKDSVYDPGLQPLTISYDPTTCLHVWNNGYSFLVEFEDSAD 111
Query: 455 KGVLEGGPLAGTYRLIQFHFHWGSSDGQGSEHTVDKKKYAAELHLVHWNT-KYKDFGEAA 631
K V+EGGPL YRL QFHFHWG+ D GSEHTVD K Y AELHLVHWN K++ F +AA
Sbjct: 112 KSVIEGGPLEHNYRLKQFHFHWGAIDAWGSEHTVDSKCYPAELHLVHWNAVKFEHFEDAA 171
Query: 632 QQPDGLAVLGVFLKIGNAQPGLQKIVDVLDSIKTKGKSVEFTGFDPRDLLPGSLDYWTYP 811
+ +GLAV+GVFLK+G LQK+V++L SIK K EF FDP L+P DYWTY
Sbjct: 172 LEENGLAVIGVFLKLGKHHKELQKLVNILPSIKHKDTLAEFGSFDPSCLMPTCPDYWTYS 231
Query: 812 GSLTTPPLLESVTWIVLREPISVSSGQMMKFRTLNFNKEGEPEHPMVDNWRPTQPLKNRQ 991
GSLTTPPL ESVTWI+ ++P+ V Q+ +FRTL F EGE E MVDN+RP QPL NR
Sbjct: 232 GSLTTPPLSESVTWIIKKQPVEVDHDQLEQFRTLLFTSEGEKEKRMVDNFRPLQPLMNRT 291
Query: 992 IRASFQ*D 1015
+R+SF D
Sbjct: 292 VRSSFHHD 299
>ref|NP_001179338.1| carbonic anhydrase 5A, mitochondrial [Bos taurus].
Length = 310
Score = 250 bits (638), Expect = 3e-66
Identities = 125/246 (50%), Positives = 159/246 (64%), Gaps = 1/246 (0%)
Frame = +2
Query: 275 WHKDFPIAKGDRQSPVDINTSTAVHDPALKPLSLCYEQATSQRIVNNGHSFNVEFDSSQD 454
W + G RQSP++I +V+DP L+PL + Y + N G+ F VEFD S +
Sbjct: 57 WKGPASVPGGTRQSPINIRWRDSVYDPQLQPLGVSYNAEACLYVWNTGYLFQVEFDDSTE 116
Query: 455 KGVLEGGPLAGTYRLIQFHFHWGSSDGQGSEHTVDKKKYAAELHLVHWNT-KYKDFGEAA 631
+ GGPL YRL QFHFHWG+ + GSEHTVD + Y AELHLVHWN KY+++ +A
Sbjct: 117 GSGISGGPLENHYRLKQFHFHWGAVNEWGSEHTVDDRVYPAELHLVHWNAVKYQNYTDAV 176
Query: 632 QQPDGLAVLGVFLKIGNAQPGLQKIVDVLDSIKTKGKSVEFTGFDPRDLLPGSLDYWTYP 811
DGLAV+GVFLK+G LQ++V VL IK K F P LLP DYWTYP
Sbjct: 177 TGADGLAVVGVFLKLGARHEELQELVAVLPDIKHKDARAALGPFQPSCLLPACQDYWTYP 236
Query: 812 GSLTTPPLLESVTWIVLREPISVSSGQMMKFRTLNFNKEGEPEHPMVDNWRPTQPLKNRQ 991
GSLTTPPL ESVTWI+ ++PI V+ Q+ FR+L F+ GE E MV+N+RP QPL NR+
Sbjct: 237 GSLTTPPLSESVTWIIHKKPIEVAQDQLAAFRSLLFSVPGEEEKTMVNNYRPLQPLMNRK 296
Query: 992 IRASFQ 1009
+R+SFQ
Sbjct: 297 VRSSFQ 302
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 52,994,951
Number of extensions: 1405799
Number of successful extensions: 4394
Number of sequences better than 1.0e-05: 27
Number of HSP's gapped: 4317
Number of HSP's successfully gapped: 27
Length of query: 490
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 384
Effective length of database: 14,174,046
Effective search space: 5442833664
Effective search space used: 5442833664
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003078
(1471 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001138642.1| carbonic anhydrase 2 [Canis lupus familiaris]. 467 e-131
Alignment gi|XP_544159.1| PREDICTED: similar to Carbonic anhydrase XIII (... 324 2e-88
Alignment gi|NP_001138644.1| carbonic anhydrase 3 [Canis lupus familiaris]. 324 2e-88
Alignment gi|NP_001138643.1| carbonic anhydrase 1 [Canis lupus familiaris]. 310 2e-84
Alignment gi|XP_546892.2| PREDICTED: similar to Carbonic anhydrase VII (C... 305 7e-83
Alignment gi|XP_543579.2| PREDICTED: similar to carbonic anhydrase VB, mi... 284 1e-76
Alignment gi|XP_851479.1| PREDICTED: similar to carbonic anhydrase VA, mi... 257 2e-68
Alignment gi|XP_861083.1| PREDICTED: similar to Carbonic anhydrase II (Ca... 246 3e-65
Alignment gi|XP_544094.2| PREDICTED: similar to carbonic anhydrase VIII [... 196 4e-50
Alignment gi|XP_540298.2| PREDICTED: similar to carbonic anhydrase XIV pr... 163 3e-40
>ref|NP_001138642.1| carbonic anhydrase 2 [Canis lupus familiaris].
Length = 260
Score = 467 bits (1202), Expect = e-131
Identities = 217/260 (83%), Positives = 233/260 (89%)
Frame = +2
Query: 230 MSHHWGYDKHNGPEHWHKDFPIAKGDRQSPVDINTSTAVHDPALKPLSLCYEQATSQRIV 409
M+HHWGY KHNGPEHWHKDFPIAKG+RQSPVDI+T AVHDPALK L CY+QA SQRI+
Sbjct: 1 MAHHWGYAKHNGPEHWHKDFPIAKGERQSPVDIDTKAAVHDPALKSLCPCYDQAVSQRII 60
Query: 410 NNGHSFNVEFDSSQDKGVLEGGPLAGTYRLIQFHFHWGSSDGQGSEHTVDKKKYAAELHL 589
NNGHSFNVEFD SQDK VL+GGPL GTYRLIQFHFHWGSSDGQGSEHTVDKKKYAAELHL
Sbjct: 61 NNGHSFNVEFDDSQDKTVLKGGPLTGTYRLIQFHFHWGSSDGQGSEHTVDKKKYAAELHL 120
Query: 590 VHWNTKYKDFGEAAQQPDGLAVLGVFLKIGNAQPGLQKIVDVLDSIKTKGKSVEFTGFDP 769
VHWNTKY +FG+A QQPDGLAVLG+FLKIG A PGLQKI+D LDSIKTKGKS +FT FDP
Sbjct: 121 VHWNTKYGEFGKAVQQPDGLAVLGIFLKIGGANPGLQKILDALDSIKTKGKSADFTNFDP 180
Query: 770 RDLLPGSLDYWTYPGSLTTPPLLESVTWIVLREPISVSSGQMMKFRTLNFNKEGEPEHPM 949
R LLP SLDYWTYPGSLTTPPLLE VTWIVL+EPISVSS QM+KFR LNFNKEGEPE M
Sbjct: 181 RGLLPESLDYWTYPGSLTTPPLLECVTWIVLKEPISVSSEQMLKFRKLNFNKEGEPEELM 240
Query: 950 VDNWRPTQPLKNRQIRASFQ 1009
+DNWRP QPL +RQI ASF+
Sbjct: 241 MDNWRPAQPLHSRQINASFK 260
>ref|XP_544159.1| PREDICTED: similar to Carbonic anhydrase XIII (Carbonate dehydratase
XIII) (CA-XIII) [Canis familiaris].
Length = 279
Score = 324 bits (830), Expect = 2e-88
Identities = 155/256 (60%), Positives = 192/256 (75%), Gaps = 1/256 (0%)
Frame = +2
Query: 242 WGYDKHNGPEHWHKDFPIAKGDRQSPVDINTSTAVHDPALKPLSLCYEQATSQRIVNNGH 421
W ++ +GP HW+K FPIA GD+QSP++I T +D +L+PLS+ Y+ +++ I N+GH
Sbjct: 23 WTKNQKSGPIHWNKFFPIADGDQQSPIEIKTKEVKYDSSLRPLSIKYDANSAKIISNSGH 82
Query: 422 SFNVEFDSSQDKGVLEGGPLAGTYRLIQFHFHWGSSDGQGSEHTVDKKKYAAELHLVHWN 601
SF+V+FD ++DK VL GGPL G+YRL QFH HWGS+D GSEH VD +YAAELH+VHWN
Sbjct: 83 SFSVDFDDTEDKSVLRGGPLTGSYRLRQFHLHWGSADDHGSEHVVDGVRYAAELHVVHWN 142
Query: 602 T-KYKDFGEAAQQPDGLAVLGVFLKIGNAQPGLQKIVDVLDSIKTKGKSVEFTGFDPRDL 778
+ KY F EAA +PDGLAVLGVFL+IG LQKI D+LDSIK KGK FT FDP L
Sbjct: 143 SDKYPSFVEAAHEPDGLAVLGVFLQIGEHNSQLQKITDILDSIKEKGKQTRFTNFDPLSL 202
Query: 779 LPGSLDYWTYPGSLTTPPLLESVTWIVLREPISVSSGQMMKFRTLNFNKEGEPEHPMVDN 958
LP S DYWTYPGSLT PPLLESVTWIVL++PI++SS Q+ FRTL EGE ++ N
Sbjct: 203 LPPSWDYWTYPGSLTVPPLLESVTWIVLKQPINISSQQLATFRTLLCTAEGEAAAFLLSN 262
Query: 959 WRPTQPLKNRQIRASF 1006
RP QPLK R++RASF
Sbjct: 263 HRPPQPLKGRKVRASF 278
>ref|NP_001138644.1| carbonic anhydrase 3 [Canis lupus familiaris].
Length = 260
Score = 324 bits (830), Expect = 2e-88
Identities = 146/260 (56%), Positives = 184/260 (70%)
Frame = +2
Query: 230 MSHHWGYDKHNGPEHWHKDFPIAKGDRQSPVDINTSTAVHDPALKPLSLCYEQATSQRIV 409
M+ WGY HNGP+HWH+ +PIAKGD QSP++++T HDP+L P S Y+ + + I+
Sbjct: 1 MAKEWGYASHNGPDHWHELYPIAKGDNQSPIELHTKDIRHDPSLLPWSASYDPGSCKTIL 60
Query: 410 NNGHSFNVEFDSSQDKGVLEGGPLAGTYRLIQFHFHWGSSDGQGSEHTVDKKKYAAELHL 589
NNG + V FD + D+ +L GGPL G YRL QFH HWG+SD GSEHTVD KYAAELHL
Sbjct: 61 NNGKTCRVVFDDTYDRSMLRGGPLTGPYRLRQFHLHWGASDDHGSEHTVDGVKYAAELHL 120
Query: 590 VHWNTKYKDFGEAAQQPDGLAVLGVFLKIGNAQPGLQKIVDVLDSIKTKGKSVEFTGFDP 769
VHWN KY +GEA +QPDG+AV+G+FLKIG + Q +D LD +KTKGK FT FDP
Sbjct: 121 VHWNPKYNTYGEALKQPDGIAVVGIFLKIGREKGEFQLFLDALDKVKTKGKEAPFTKFDP 180
Query: 770 RDLLPGSLDYWTYPGSLTTPPLLESVTWIVLREPISVSSGQMMKFRTLNFNKEGEPEHPM 949
L P DYWTY GS TTPP E + WI+L+EP++VSS QM K R+L + E EP P+
Sbjct: 181 SCLFPACRDYWTYHGSFTTPPCEECIVWILLKEPMTVSSDQMAKLRSLFSSAENEPPVPL 240
Query: 950 VDNWRPTQPLKNRQIRASFQ 1009
V NWRP QP+K R ++ASF+
Sbjct: 241 VGNWRPPQPIKGRVVKASFK 260
>ref|NP_001138643.1| carbonic anhydrase 1 [Canis lupus familiaris].
Length = 261
Score = 310 bits (795), Expect = 2e-84
Identities = 144/259 (55%), Positives = 186/259 (71%), Gaps = 1/259 (0%)
Frame = +2
Query: 233 SHHWGYDKHNGPEHWHKDFPIAKGDRQSPVDINTSTAVHDPALKPLSLCYEQATSQRIVN 412
S +WGYD NGPE W K +PIA G+ QSP+DI TS HD +LKP+S+ Y AT++ I+N
Sbjct: 3 SSNWGYDDKNGPEQWGKLYPIANGNNQSPIDIKTSETKHDTSLKPISVSYNPATAKEIIN 62
Query: 413 NGHSFNVEFDSSQDKGVLEGGPLAGTYRLIQFHFHWGSSDGQGSEHTVDKKKYAAELHLV 592
GHSF+V ++ D+ VL+GGPL+ +YRL QFHFHWGS++ GSEHTVD KY+ ELH+V
Sbjct: 63 VGHSFHVNYEDHDDRSVLKGGPLSASYRLSQFHFHWGSTNDYGSEHTVDGVKYSGELHIV 122
Query: 593 HWN-TKYKDFGEAAQQPDGLAVLGVFLKIGNAQPGLQKIVDVLDSIKTKGKSVEFTGFDP 769
HWN +KY F EA Q DGLA++ V +KI A P LQK++D L+++KTK K FT FDP
Sbjct: 123 HWNSSKYSSFAEAVSQADGLAIIAVLMKIDQANPKLQKVLDALNAVKTKNKRAPFTNFDP 182
Query: 770 RDLLPGSLDYWTYPGSLTTPPLLESVTWIVLREPISVSSGQMMKFRTLNFNKEGEPEHPM 949
LLP SLDYWTY GSLT PPL ESV+WI+ ++ I +S Q+ +FR+L N EG+ P+
Sbjct: 183 SILLPSSLDYWTYNGSLTHPPLYESVSWIICKDSIGISPEQLAQFRSLLSNVEGDQAVPI 242
Query: 950 VDNWRPTQPLKNRQIRASF 1006
N RP QPLK R ++ASF
Sbjct: 243 QHNNRPPQPLKGRIVKASF 261
>ref|XP_546892.2| PREDICTED: similar to Carbonic anhydrase VII (Carbonate dehydratase
VII) (CA-VII) [Canis familiaris].
Length = 278
Score = 305 bits (781), Expect = 7e-83
Identities = 149/276 (53%), Positives = 186/276 (67%), Gaps = 15/276 (5%)
Frame = +2
Query: 227 TMSHHWGYDKHN--------------GPEHWHKDFPIAKGDRQSPVDINTSTAVHDPALK 364
T H WGY +++ GP WHK +PIA+GDRQSP++I +S AV+ P+LK
Sbjct: 2 TGHHCWGYGQNDEIQASLSPSLSTPAGPSQWHKLYPIAQGDRQSPINIVSSQAVYSPSLK 61
Query: 365 PLSLCYEQATSQRIVNNGHSFNVEFDSSQDKGVLEGGPLAGTYRLIQFHFHWGSSDGQGS 544
PL L YE S I NNGHS V+F+ S D+ + GGPL G YRL Q HFHWG GS
Sbjct: 62 PLELSYEACISLSITNNGHSVQVDFNDSDDRTAVTGGPLDGPYRLKQLHFHWGKKHSVGS 121
Query: 545 EHTVDKKKYAAELHLVHWNTK-YKDFGEAAQQPDGLAVLGVFLKIGNAQPGLQKIVDVLD 721
EHTVD K + +ELHLVHWN K Y FGEAA PDGLAV+G+FL+ G+ P + ++ D L
Sbjct: 122 EHTVDGKSFPSELHLVHWNAKKYSTFGEAASAPDGLAVVGIFLETGDEHPSMNRLTDALY 181
Query: 722 SIKTKGKSVEFTGFDPRDLLPGSLDYWTYPGSLTTPPLLESVTWIVLREPISVSSGQMMK 901
++ KG +F+ F+P+ LLP S YWTYPGSLTTPPL ESVTWIVLREPIS+S QM K
Sbjct: 182 MVRFKGTKAQFSCFNPKCLLPASRHYWTYPGSLTTPPLSESVTWIVLREPISISERQMEK 241
Query: 902 FRTLNFNKEGEPEHPMVDNWRPTQPLKNRQIRASFQ 1009
FR+L F E + MV+N+RP QPLK R ++ASF+
Sbjct: 242 FRSLLFTSEEDERIHMVNNFRPPQPLKGRVVKASFR 277
>ref|XP_543579.2| PREDICTED: similar to carbonic anhydrase VB, mitochondrial precursor
[Canis familiaris].
Length = 317
Score = 284 bits (727), Expect = 1e-76
Identities = 140/248 (56%), Positives = 173/248 (69%), Gaps = 1/248 (0%)
Frame = +2
Query: 275 WHKDFPIAKGDRQSPVDINTSTAVHDPALKPLSLCYEQATSQRIVNNGHSFNVEFDSSQD 454
W + G+RQSP++I +V DPALKPL++ Y+ T + NNG+SF VEF+ S D
Sbjct: 52 WESVDLVPVGERQSPINIRWRDSVFDPALKPLTISYDPTTCLHVWNNGYSFLVEFEDSTD 111
Query: 455 KGVLEGGPLAGTYRLIQFHFHWGSSDGQGSEHTVDKKKYAAELHLVHWNT-KYKDFGEAA 631
K V++GGPL YRL QFHFHWG+ D GSEHTVD K Y AELHLVHWN K+++F +AA
Sbjct: 112 KSVIKGGPLEDNYRLKQFHFHWGAIDAWGSEHTVDSKCYPAELHLVHWNAVKFENFEDAA 171
Query: 632 QQPDGLAVLGVFLKIGNAQPGLQKIVDVLDSIKTKGKSVEFTGFDPRDLLPGSLDYWTYP 811
+ GLAV+GVFLK+G LQK+VD L SIK K VEF FDP L+P DYWTY
Sbjct: 172 LEEHGLAVIGVFLKLGKHHQELQKLVDTLPSIKHKDTLVEFGSFDPSCLMPACPDYWTYS 231
Query: 812 GSLTTPPLLESVTWIVLREPISVSSGQMMKFRTLNFNKEGEPEHPMVDNWRPTQPLKNRQ 991
GSLTTPPL ESVTWI+ ++P+ V Q+ +FRTL F EGE E MVDN+RP QPL NR
Sbjct: 232 GSLTTPPLSESVTWIIKKQPVEVDHDQLEQFRTLLFTSEGEKEKRMVDNFRPLQPLMNRT 291
Query: 992 IRASFQ*D 1015
+R+SF+ D
Sbjct: 292 VRSSFRHD 299
>ref|XP_851479.1| PREDICTED: similar to carbonic anhydrase VA, mitochondrial precursor
[Canis familiaris].
Length = 295
Score = 257 bits (656), Expect = 2e-68
Identities = 128/246 (52%), Positives = 163/246 (66%), Gaps = 1/246 (0%)
Frame = +2
Query: 275 WHKDFPIAKGDRQSPVDINTSTAVHDPALKPLSLCYEQATSQRIVNNGHSFNVEFDSSQD 454
W + G RQSP++I +V+DP LK L + Y + + N G+ F VEFD S +
Sbjct: 38 WKGLASVPGGTRQSPINIRWRDSVYDPRLKSLQVSYAATSCLHVWNTGYFFQVEFDDSTE 97
Query: 455 KGVLEGGPLAGTYRLIQFHFHWGSSDGQGSEHTVDKKKYAAELHLVHWNT-KYKDFGEAA 631
+ GGPL YRL QFHFHWG+++ GSEHTVD + Y AELHLVHWN+ KY+++ EA
Sbjct: 98 GSGISGGPLENHYRLKQFHFHWGAANAWGSEHTVDDRAYPAELHLVHWNSVKYQNYKEAI 157
Query: 632 QQPDGLAVLGVFLKIGNAQPGLQKIVDVLDSIKTKGKSVEFTGFDPRDLLPGSLDYWTYP 811
+G+AV+GVFL++G GLQK+V+VL IK KG F P LLP DYWTYP
Sbjct: 158 MGENGVAVIGVFLQLGAHHEGLQKLVEVLPEIKHKGARATMGPFQPSCLLPTCRDYWTYP 217
Query: 812 GSLTTPPLLESVTWIVLREPISVSSGQMMKFRTLNFNKEGEPEHPMVDNWRPTQPLKNRQ 991
GSLTTPPL ESVTWI+ ++PI V+ Q+ FRTL F+ GE E MV+N RP QPL NR+
Sbjct: 218 GSLTTPPLTESVTWIIQKQPIEVAPNQLAAFRTLLFSALGEEEQMMVNNNRPVQPLMNRE 277
Query: 992 IRASFQ 1009
IR+SFQ
Sbjct: 278 IRSSFQ 283
>ref|XP_861083.1| PREDICTED: similar to Carbonic anhydrase II (Carbonate dehydratase
II) (CA-II) (Carbonic anhydrase C) isoform 2 [Canis
familiaris].
Length = 150
Score = 246 bits (629), Expect = 3e-65
Identities = 116/144 (80%), Positives = 127/144 (88%)
Frame = +2
Query: 578 ELHLVHWNTKYKDFGEAAQQPDGLAVLGVFLKIGNAQPGLQKIVDVLDSIKTKGKSVEFT 757
+LHLVHWNTKY +FG+A QQPDGLAVLG+FLKIG A PGLQKI+D LDSIKTKGKS +FT
Sbjct: 7 QLHLVHWNTKYGEFGKAVQQPDGLAVLGIFLKIGGANPGLQKILDALDSIKTKGKSADFT 66
Query: 758 GFDPRDLLPGSLDYWTYPGSLTTPPLLESVTWIVLREPISVSSGQMMKFRTLNFNKEGEP 937
FDPR LLP SLDYWTYPGSLTTPPLLE VTWIVL+EPISVSS QM+KFR LNFNKEGEP
Sbjct: 67 NFDPRGLLPESLDYWTYPGSLTTPPLLECVTWIVLKEPISVSSEQMLKFRKLNFNKEGEP 126
Query: 938 EHPMVDNWRPTQPLKNRQIRASFQ 1009
E M+DNWRP QPL +RQI ASF+
Sbjct: 127 EELMMDNWRPAQPLHSRQINASFK 150
>ref|XP_544094.2| PREDICTED: similar to carbonic anhydrase VIII [Canis familiaris].
Length = 290
Score = 196 bits (499), Expect = 4e-50
Identities = 111/268 (41%), Positives = 158/268 (58%), Gaps = 12/268 (4%)
Frame = +2
Query: 242 WGYDKHNGPEHWHKDFPIAKGDRQSPVDINTSTAVHDPALKPLSLC--YEQATSQRIVNN 415
WGY++ G E W FP A G+ QSP+++N+ A +DP+L + L Y + N+
Sbjct: 29 WGYEE--GVE-WGLVFPDANGEYQSPINLNSREARYDPSLLDVRLSPNYVVCRDCEVTND 85
Query: 416 GHSFNVEFDSSQDKGVLEGGPL--AGTYRLIQFHFHWGSSDGQGSEHTVDKKKYAAELHL 589
GH+ V S K VL GGPL + L + FHWG + +GSEHTV+ K + ELHL
Sbjct: 86 GHTIQVILKS---KSVLSGGPLPQGHEFELYEVRFHWGRENQRGSEHTVNFKAFPMELHL 142
Query: 590 VHWN-TKYKDFGEAAQQPDGLAVLGVFLKIGNAQPGLQKIVDVLDSIKTKGKSVEFTGFD 766
+HWN T + EA +P G+A++ +F++IG GL+ + ++L I+ KGKS F+
Sbjct: 143 IHWNSTLFGSIDEAVGKPHGIAIIALFVQIGKEHVGLKAVTEILQDIQYKGKSKTIPCFN 202
Query: 767 PRDLLPGSL--DYWTYPGSLTTPPLLESVTWIVLREPISVSSGQMMKFRTLNFNKEGEP- 937
P LLP L DYW Y GSLT PP E VTWI+ R P+++S Q+ +FR L + +G
Sbjct: 203 PNTLLPDPLLRDYWVYEGSLTIPPCSEGVTWILFRYPLTISQLQIEEFRRLRTHVKGAEL 262
Query: 938 ----EHPMVDNWRPTQPLKNRQIRASFQ 1009
+ + DN+RPTQPL +R IRA+FQ
Sbjct: 263 VEGCDGILGDNFRPTQPLSDRVIRAAFQ 290
>ref|XP_540298.2| PREDICTED: similar to carbonic anhydrase XIV precursor [Canis
familiaris].
Length = 337
Score = 163 bits (413), Expect = 3e-40
Identities = 98/263 (37%), Positives = 143/263 (54%), Gaps = 7/263 (2%)
Frame = +2
Query: 239 HWGYDKHNGPEHWHKDFPIAKGDRQSPVDINTSTAVHDPALKPLSLC-YEQATSQRIV-- 409
HW Y +G +HW P + QSP+DI T + DP L L L Y+Q ++ +
Sbjct: 22 HWTYVGPHGQDHWPASHPECGSNAQSPIDIQTDSVTFDPELPALQLQGYDQPGTEPLDLH 81
Query: 410 NNGHSFNVEFDSSQDKGVLEGGPLAGTYRLIQFHFHWGSSDG-QGSEHTVDKKKYAAELH 586
NNGH+ + + LEG P Y Q H HWG + +GSEH ++ + AAELH
Sbjct: 82 NNGHTVQLSLPPTM---YLEGLPRK--YVAAQLHLHWGETGSLRGSEHQINGEATAAELH 136
Query: 587 LVHWNT-KYKDFGEAAQQPDGLAVLGVFLKIGNAQ-PGLQKIVDVLDSIKTKGKSVEFTG 760
+VH+++ Y GEAA +P GLAVLG+ +++G A+ P + I+ L I+ K +
Sbjct: 137 IVHYDSDSYDSLGEAAPKPQGLAVLGILIEVGEAKNPVYEHILSHLHEIRHKDQKTSVPP 196
Query: 761 FDPRDLLPGSLD-YWTYPGSLTTPPLLESVTWIVLREPISVSSGQMMKFRTLNFNKEGEP 937
F+ +LLP L+ ++ Y GSLTTPP +SV W V +S GQ+ + + F+ E EP
Sbjct: 197 FNVGELLPPQLNQFFRYNGSLTTPPCYQSVLWTVFNRRAQISMGQLEELQETLFSTEEEP 256
Query: 938 EHPMVDNWRPTQPLKNRQIRASF 1006
+V N+R QPL R + ASF
Sbjct: 257 SKLLVRNYRAPQPLNQRTVFASF 279
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 55,267,920
Number of extensions: 1448392
Number of successful extensions: 4540
Number of sequences better than 1.0e-05: 22
Number of HSP's gapped: 4489
Number of HSP's successfully gapped: 22
Length of query: 490
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 383
Effective length of database: 15,307,552
Effective search space: 5862792416
Effective search space used: 5862792416
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003078
(1471 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_000058.1| carbonic anhydrase 2 [Homo sapiens]. 468 e-132
Alignment gi|NP_001158302.1| carbonic anhydrase 1 [Homo sapiens]. 328 8e-90
Alignment gi|NP_001122303.1| carbonic anhydrase 1 [Homo sapiens]. 328 8e-90
Alignment gi|NP_001122302.1| carbonic anhydrase 1 [Homo sapiens]. 328 8e-90
Alignment gi|NP_001122301.1| carbonic anhydrase 1 [Homo sapiens]. 328 8e-90
Alignment gi|NP_001729.1| carbonic anhydrase 1 [Homo sapiens]. 328 8e-90
Alignment gi|NP_940986.1| carbonic anhydrase 13 [Homo sapiens]. 327 2e-89
Alignment gi|NP_005172.1| carbonic anhydrase 3 [Homo sapiens]. 321 1e-87
Alignment gi|NP_005173.1| carbonic anhydrase 7 isoform 1 [Homo sapiens]. 318 8e-87
Alignment gi|NP_009151.1| carbonic anhydrase 5B, mitochondrial precursor ... 284 2e-76
>ref|NP_000058.1| carbonic anhydrase 2 [Homo sapiens].
Length = 260
Score = 468 bits (1205), Expect = e-132
Identities = 217/260 (83%), Positives = 238/260 (91%)
Frame = +2
Query: 230 MSHHWGYDKHNGPEHWHKDFPIAKGDRQSPVDINTSTAVHDPALKPLSLCYEQATSQRIV 409
MSHHWGY KHNGPEHWHKDFPIAKG+RQSPVDI+T TA +DP+LKPLS+ Y+QATS RI+
Sbjct: 1 MSHHWGYGKHNGPEHWHKDFPIAKGERQSPVDIDTHTAKYDPSLKPLSVSYDQATSLRIL 60
Query: 410 NNGHSFNVEFDSSQDKGVLEGGPLAGTYRLIQFHFHWGSSDGQGSEHTVDKKKYAAELHL 589
NNGH+FNVEFD SQDK VL+GGPL GTYRLIQFHFHWGS DGQGSEHTVDKKKYAAELHL
Sbjct: 61 NNGHAFNVEFDDSQDKAVLKGGPLDGTYRLIQFHFHWGSLDGQGSEHTVDKKKYAAELHL 120
Query: 590 VHWNTKYKDFGEAAQQPDGLAVLGVFLKIGNAQPGLQKIVDVLDSIKTKGKSVEFTGFDP 769
VHWNTKY DFG+A QQPDGLAVLG+FLK+G+A+PGLQK+VDVLDSIKTKGKS +FT FDP
Sbjct: 121 VHWNTKYGDFGKAVQQPDGLAVLGIFLKVGSAKPGLQKVVDVLDSIKTKGKSADFTNFDP 180
Query: 770 RDLLPGSLDYWTYPGSLTTPPLLESVTWIVLREPISVSSGQMMKFRTLNFNKEGEPEHPM 949
R LLP SLDYWTYPGSLTTPPLLE VTWIVL+EPISVSS Q++KFR LNFN EGEPE M
Sbjct: 181 RGLLPESLDYWTYPGSLTTPPLLECVTWIVLKEPISVSSEQVLKFRKLNFNGEGEPEELM 240
Query: 950 VDNWRPTQPLKNRQIRASFQ 1009
VDNWRP QPLKNRQI+ASF+
Sbjct: 241 VDNWRPAQPLKNRQIKASFK 260
>ref|NP_001158302.1| carbonic anhydrase 1 [Homo sapiens].
Length = 261
Score = 328 bits (841), Expect = 8e-90
Identities = 155/259 (59%), Positives = 191/259 (73%), Gaps = 1/259 (0%)
Frame = +2
Query: 233 SHHWGYDKHNGPEHWHKDFPIAKGDRQSPVDINTSTAVHDPALKPLSLCYEQATSQRIVN 412
S WGYD NGPE W K +PIA G+ QSPVDI TS HD +LKP+S+ Y AT++ I+N
Sbjct: 3 SPDWGYDDKNGPEQWSKLYPIANGNNQSPVDIKTSETKHDTSLKPISVSYNPATAKEIIN 62
Query: 413 NGHSFNVEFDSSQDKGVLEGGPLAGTYRLIQFHFHWGSSDGQGSEHTVDKKKYAAELHLV 592
GHSF+V F+ + ++ VL+GGP + +YRL QFHFHWGS++ GSEHTVD KY+AELH+
Sbjct: 63 VGHSFHVNFEDNDNRSVLKGGPFSDSYRLFQFHFHWGSTNEHGSEHTVDGVKYSAELHVA 122
Query: 593 HWNT-KYKDFGEAAQQPDGLAVLGVFLKIGNAQPGLQKIVDVLDSIKTKGKSVEFTGFDP 769
HWN+ KY EAA + DGLAV+GV +K+G A P LQK++D L +IKTKGK FT FDP
Sbjct: 123 HWNSAKYSSLAEAASKADGLAVIGVLMKVGEANPKLQKVLDALQAIKTKGKRAPFTNFDP 182
Query: 770 RDLLPGSLDYWTYPGSLTTPPLLESVTWIVLREPISVSSGQMMKFRTLNFNKEGEPEHPM 949
LLP SLD+WTYPGSLT PPL ESVTWI+ +E ISVSS Q+ +FR+L N EG+ PM
Sbjct: 183 STLLPSSLDFWTYPGSLTHPPLYESVTWIICKESISVSSEQLAQFRSLLSNVEGDNAVPM 242
Query: 950 VDNWRPTQPLKNRQIRASF 1006
N RPTQPLK R +RASF
Sbjct: 243 QHNNRPTQPLKGRTVRASF 261
>ref|NP_001122303.1| carbonic anhydrase 1 [Homo sapiens].
Length = 261
Score = 328 bits (841), Expect = 8e-90
Identities = 155/259 (59%), Positives = 191/259 (73%), Gaps = 1/259 (0%)
Frame = +2
Query: 233 SHHWGYDKHNGPEHWHKDFPIAKGDRQSPVDINTSTAVHDPALKPLSLCYEQATSQRIVN 412
S WGYD NGPE W K +PIA G+ QSPVDI TS HD +LKP+S+ Y AT++ I+N
Sbjct: 3 SPDWGYDDKNGPEQWSKLYPIANGNNQSPVDIKTSETKHDTSLKPISVSYNPATAKEIIN 62
Query: 413 NGHSFNVEFDSSQDKGVLEGGPLAGTYRLIQFHFHWGSSDGQGSEHTVDKKKYAAELHLV 592
GHSF+V F+ + ++ VL+GGP + +YRL QFHFHWGS++ GSEHTVD KY+AELH+
Sbjct: 63 VGHSFHVNFEDNDNRSVLKGGPFSDSYRLFQFHFHWGSTNEHGSEHTVDGVKYSAELHVA 122
Query: 593 HWNT-KYKDFGEAAQQPDGLAVLGVFLKIGNAQPGLQKIVDVLDSIKTKGKSVEFTGFDP 769
HWN+ KY EAA + DGLAV+GV +K+G A P LQK++D L +IKTKGK FT FDP
Sbjct: 123 HWNSAKYSSLAEAASKADGLAVIGVLMKVGEANPKLQKVLDALQAIKTKGKRAPFTNFDP 182
Query: 770 RDLLPGSLDYWTYPGSLTTPPLLESVTWIVLREPISVSSGQMMKFRTLNFNKEGEPEHPM 949
LLP SLD+WTYPGSLT PPL ESVTWI+ +E ISVSS Q+ +FR+L N EG+ PM
Sbjct: 183 STLLPSSLDFWTYPGSLTHPPLYESVTWIICKESISVSSEQLAQFRSLLSNVEGDNAVPM 242
Query: 950 VDNWRPTQPLKNRQIRASF 1006
N RPTQPLK R +RASF
Sbjct: 243 QHNNRPTQPLKGRTVRASF 261
>ref|NP_001122302.1| carbonic anhydrase 1 [Homo sapiens].
Length = 261
Score = 328 bits (841), Expect = 8e-90
Identities = 155/259 (59%), Positives = 191/259 (73%), Gaps = 1/259 (0%)
Frame = +2
Query: 233 SHHWGYDKHNGPEHWHKDFPIAKGDRQSPVDINTSTAVHDPALKPLSLCYEQATSQRIVN 412
S WGYD NGPE W K +PIA G+ QSPVDI TS HD +LKP+S+ Y AT++ I+N
Sbjct: 3 SPDWGYDDKNGPEQWSKLYPIANGNNQSPVDIKTSETKHDTSLKPISVSYNPATAKEIIN 62
Query: 413 NGHSFNVEFDSSQDKGVLEGGPLAGTYRLIQFHFHWGSSDGQGSEHTVDKKKYAAELHLV 592
GHSF+V F+ + ++ VL+GGP + +YRL QFHFHWGS++ GSEHTVD KY+AELH+
Sbjct: 63 VGHSFHVNFEDNDNRSVLKGGPFSDSYRLFQFHFHWGSTNEHGSEHTVDGVKYSAELHVA 122
Query: 593 HWNT-KYKDFGEAAQQPDGLAVLGVFLKIGNAQPGLQKIVDVLDSIKTKGKSVEFTGFDP 769
HWN+ KY EAA + DGLAV+GV +K+G A P LQK++D L +IKTKGK FT FDP
Sbjct: 123 HWNSAKYSSLAEAASKADGLAVIGVLMKVGEANPKLQKVLDALQAIKTKGKRAPFTNFDP 182
Query: 770 RDLLPGSLDYWTYPGSLTTPPLLESVTWIVLREPISVSSGQMMKFRTLNFNKEGEPEHPM 949
LLP SLD+WTYPGSLT PPL ESVTWI+ +E ISVSS Q+ +FR+L N EG+ PM
Sbjct: 183 STLLPSSLDFWTYPGSLTHPPLYESVTWIICKESISVSSEQLAQFRSLLSNVEGDNAVPM 242
Query: 950 VDNWRPTQPLKNRQIRASF 1006
N RPTQPLK R +RASF
Sbjct: 243 QHNNRPTQPLKGRTVRASF 261
>ref|NP_001122301.1| carbonic anhydrase 1 [Homo sapiens].
Length = 261
Score = 328 bits (841), Expect = 8e-90
Identities = 155/259 (59%), Positives = 191/259 (73%), Gaps = 1/259 (0%)
Frame = +2
Query: 233 SHHWGYDKHNGPEHWHKDFPIAKGDRQSPVDINTSTAVHDPALKPLSLCYEQATSQRIVN 412
S WGYD NGPE W K +PIA G+ QSPVDI TS HD +LKP+S+ Y AT++ I+N
Sbjct: 3 SPDWGYDDKNGPEQWSKLYPIANGNNQSPVDIKTSETKHDTSLKPISVSYNPATAKEIIN 62
Query: 413 NGHSFNVEFDSSQDKGVLEGGPLAGTYRLIQFHFHWGSSDGQGSEHTVDKKKYAAELHLV 592
GHSF+V F+ + ++ VL+GGP + +YRL QFHFHWGS++ GSEHTVD KY+AELH+
Sbjct: 63 VGHSFHVNFEDNDNRSVLKGGPFSDSYRLFQFHFHWGSTNEHGSEHTVDGVKYSAELHVA 122
Query: 593 HWNT-KYKDFGEAAQQPDGLAVLGVFLKIGNAQPGLQKIVDVLDSIKTKGKSVEFTGFDP 769
HWN+ KY EAA + DGLAV+GV +K+G A P LQK++D L +IKTKGK FT FDP
Sbjct: 123 HWNSAKYSSLAEAASKADGLAVIGVLMKVGEANPKLQKVLDALQAIKTKGKRAPFTNFDP 182
Query: 770 RDLLPGSLDYWTYPGSLTTPPLLESVTWIVLREPISVSSGQMMKFRTLNFNKEGEPEHPM 949
LLP SLD+WTYPGSLT PPL ESVTWI+ +E ISVSS Q+ +FR+L N EG+ PM
Sbjct: 183 STLLPSSLDFWTYPGSLTHPPLYESVTWIICKESISVSSEQLAQFRSLLSNVEGDNAVPM 242
Query: 950 VDNWRPTQPLKNRQIRASF 1006
N RPTQPLK R +RASF
Sbjct: 243 QHNNRPTQPLKGRTVRASF 261
>ref|NP_001729.1| carbonic anhydrase 1 [Homo sapiens].
Length = 261
Score = 328 bits (841), Expect = 8e-90
Identities = 155/259 (59%), Positives = 191/259 (73%), Gaps = 1/259 (0%)
Frame = +2
Query: 233 SHHWGYDKHNGPEHWHKDFPIAKGDRQSPVDINTSTAVHDPALKPLSLCYEQATSQRIVN 412
S WGYD NGPE W K +PIA G+ QSPVDI TS HD +LKP+S+ Y AT++ I+N
Sbjct: 3 SPDWGYDDKNGPEQWSKLYPIANGNNQSPVDIKTSETKHDTSLKPISVSYNPATAKEIIN 62
Query: 413 NGHSFNVEFDSSQDKGVLEGGPLAGTYRLIQFHFHWGSSDGQGSEHTVDKKKYAAELHLV 592
GHSF+V F+ + ++ VL+GGP + +YRL QFHFHWGS++ GSEHTVD KY+AELH+
Sbjct: 63 VGHSFHVNFEDNDNRSVLKGGPFSDSYRLFQFHFHWGSTNEHGSEHTVDGVKYSAELHVA 122
Query: 593 HWNT-KYKDFGEAAQQPDGLAVLGVFLKIGNAQPGLQKIVDVLDSIKTKGKSVEFTGFDP 769
HWN+ KY EAA + DGLAV+GV +K+G A P LQK++D L +IKTKGK FT FDP
Sbjct: 123 HWNSAKYSSLAEAASKADGLAVIGVLMKVGEANPKLQKVLDALQAIKTKGKRAPFTNFDP 182
Query: 770 RDLLPGSLDYWTYPGSLTTPPLLESVTWIVLREPISVSSGQMMKFRTLNFNKEGEPEHPM 949
LLP SLD+WTYPGSLT PPL ESVTWI+ +E ISVSS Q+ +FR+L N EG+ PM
Sbjct: 183 STLLPSSLDFWTYPGSLTHPPLYESVTWIICKESISVSSEQLAQFRSLLSNVEGDNAVPM 242
Query: 950 VDNWRPTQPLKNRQIRASF 1006
N RPTQPLK R +RASF
Sbjct: 243 QHNNRPTQPLKGRTVRASF 261
>ref|NP_940986.1| carbonic anhydrase 13 [Homo sapiens].
Length = 262
Score = 327 bits (838), Expect = 2e-89
Identities = 157/256 (61%), Positives = 191/256 (74%), Gaps = 1/256 (0%)
Frame = +2
Query: 242 WGYDKHNGPEHWHKDFPIAKGDRQSPVDINTSTAVHDPALKPLSLCYEQATSQRIVNNGH 421
WGY +HNGP HW + FPIA GD+QSP++I T +D +L+PLS+ Y+ ++++ I N+GH
Sbjct: 6 WGYREHNGPIHWKEFFPIADGDQQSPIEIKTKEVKYDSSLRPLSIKYDPSSAKIISNSGH 65
Query: 422 SFNVEFDSSQDKGVLEGGPLAGTYRLIQFHFHWGSSDGQGSEHTVDKKKYAAELHLVHWN 601
SFNV+FD +++K VL GGPL G+YRL Q H HWGS+D GSEH VD YAAELH+VHWN
Sbjct: 66 SFNVDFDDTENKSVLRGGPLTGSYRLRQVHLHWGSADDHGSEHIVDGVSYAAELHVVHWN 125
Query: 602 T-KYKDFGEAAQQPDGLAVLGVFLKIGNAQPGLQKIVDVLDSIKTKGKSVEFTGFDPRDL 778
+ KY F EAA +PDGLAVLGVFL+IG LQKI D LDSIK KGK FT FD L
Sbjct: 126 SDKYPSFVEAAHEPDGLAVLGVFLQIGEPNSQLQKITDTLDSIKEKGKQTRFTNFDLLSL 185
Query: 779 LPGSLDYWTYPGSLTTPPLLESVTWIVLREPISVSSGQMMKFRTLNFNKEGEPEHPMVDN 958
LP S DYWTYPGSLT PPLLESVTWIVL++PI++SS Q+ KFR+L EGE +V N
Sbjct: 186 LPPSWDYWTYPGSLTVPPLLESVTWIVLKQPINISSQQLAKFRSLLCTAEGEAAAFLVSN 245
Query: 959 WRPTQPLKNRQIRASF 1006
RP QPLK R++RASF
Sbjct: 246 HRPPQPLKGRKVRASF 261
>ref|NP_005172.1| carbonic anhydrase 3 [Homo sapiens].
Length = 260
Score = 321 bits (822), Expect = 1e-87
Identities = 147/260 (56%), Positives = 184/260 (70%)
Frame = +2
Query: 230 MSHHWGYDKHNGPEHWHKDFPIAKGDRQSPVDINTSTAVHDPALKPLSLCYEQATSQRIV 409
M+ WGY HNGP+HWH+ FP AKG+ QSPV+++T HDP+L+P S+ Y+ +++ I+
Sbjct: 1 MAKEWGYASHNGPDHWHELFPNAKGENQSPVELHTKDIRHDPSLQPWSVSYDGGSAKTIL 60
Query: 410 NNGHSFNVEFDSSQDKGVLEGGPLAGTYRLIQFHFHWGSSDGQGSEHTVDKKKYAAELHL 589
NNG + V FD + D+ +L GGPL G YRL QFH HWGSSD GSEHTVD KYAAELHL
Sbjct: 61 NNGKTCRVVFDDTYDRSMLRGGPLPGPYRLRQFHLHWGSSDDHGSEHTVDGVKYAAELHL 120
Query: 590 VHWNTKYKDFGEAAQQPDGLAVLGVFLKIGNAQPGLQKIVDVLDSIKTKGKSVEFTGFDP 769
VHWN KY F EA +Q DG+AV+G+FLKIG+ Q +D LD IKTKGK FT FDP
Sbjct: 121 VHWNPKYNTFKEALKQRDGIAVIGIFLKIGHENGEFQIFLDALDKIKTKGKEAPFTKFDP 180
Query: 770 RDLLPGSLDYWTYPGSLTTPPLLESVTWIVLREPISVSSGQMMKFRTLNFNKEGEPEHPM 949
L P DYWTY GS TTPP E + W++L+EP++VSS QM K R+L + E EP P+
Sbjct: 181 SCLFPACRDYWTYQGSFTTPPCEECIVWLLLKEPMTVSSDQMAKLRSLLSSAENEPPVPL 240
Query: 950 VDNWRPTQPLKNRQIRASFQ 1009
V NWRP QP+ NR +RASF+
Sbjct: 241 VSNWRPPQPINNRVVRASFK 260
>ref|NP_005173.1| carbonic anhydrase 7 isoform 1 [Homo sapiens].
Length = 264
Score = 318 bits (815), Expect = 8e-87
Identities = 151/262 (57%), Positives = 187/262 (71%), Gaps = 1/262 (0%)
Frame = +2
Query: 227 TMSHHWGYDKHNGPEHWHKDFPIAKGDRQSPVDINTSTAVHDPALKPLSLCYEQATSQRI 406
T H WGY + +GP HWHK +PIA+GDRQSP++I +S AV+ P+L+PL L YE S I
Sbjct: 2 TGHHGWGYGQDDGPSHWHKLYPIAQGDRQSPINIISSQAVYSPSLQPLELSYEACMSLSI 61
Query: 407 VNNGHSFNVEFDSSQDKGVLEGGPLAGTYRLIQFHFHWGSSDGQGSEHTVDKKKYAAELH 586
NNGHS V+F+ S D+ V+ GGPL G YRL QFHFHWG GSEHTVD K + +ELH
Sbjct: 62 TNNGHSVQVDFNDSDDRTVVTGGPLEGPYRLKQFHFHWGKKHDVGSEHTVDGKSFPSELH 121
Query: 587 LVHWNT-KYKDFGEAAQQPDGLAVLGVFLKIGNAQPGLQKIVDVLDSIKTKGKSVEFTGF 763
LVHWN KY FGEAA PDGLAV+GVFL+ G+ P + ++ D L ++ KG +F+ F
Sbjct: 122 LVHWNAKKYSTFGEAASAPDGLAVVGVFLETGDEHPSMNRLTDALYMVRFKGTKAQFSCF 181
Query: 764 DPRDLLPGSLDYWTYPGSLTTPPLLESVTWIVLREPISVSSGQMMKFRTLNFNKEGEPEH 943
+P+ LLP S YWTYPGSLTTPPL ESVTWIVLREPI +S QM KFR+L F E +
Sbjct: 182 NPKCLLPASRHYWTYPGSLTTPPLSESVTWIVLREPICISERQMGKFRSLLFTSEDDERI 241
Query: 944 PMVDNWRPTQPLKNRQIRASFQ 1009
MV+N+RP QPLK R ++ASF+
Sbjct: 242 HMVNNFRPPQPLKGRVVKASFR 263
>ref|NP_009151.1| carbonic anhydrase 5B, mitochondrial precursor [Homo sapiens].
Length = 317
Score = 284 bits (726), Expect = 2e-76
Identities = 139/248 (56%), Positives = 175/248 (70%), Gaps = 1/248 (0%)
Frame = +2
Query: 275 WHKDFPIAKGDRQSPVDINTSTAVHDPALKPLSLCYEQATSQRIVNNGHSFNVEFDSSQD 454
W + GDRQSP++I +V+DP LKPL++ Y+ AT + NNG+SF VEF+ S D
Sbjct: 52 WESVDLVPGGDRQSPINIRWRDSVYDPGLKPLTISYDPATCLHVWNNGYSFLVEFEDSTD 111
Query: 455 KGVLEGGPLAGTYRLIQFHFHWGSSDGQGSEHTVDKKKYAAELHLVHWNT-KYKDFGEAA 631
K V++GGPL YRL QFHFHWG+ D GSEHTVD K + AELHLVHWN ++++F +AA
Sbjct: 112 KSVIKGGPLEHNYRLKQFHFHWGAIDAWGSEHTVDSKCFPAELHLVHWNAVRFENFEDAA 171
Query: 632 QQPDGLAVLGVFLKIGNAQPGLQKIVDVLDSIKTKGKSVEFTGFDPRDLLPGSLDYWTYP 811
+ +GLAV+GVFLK+G LQK+VD L SIK K VEF FDP L+P DYWTY
Sbjct: 172 LEENGLAVIGVFLKLGKHHKELQKLVDTLPSIKHKDALVEFGSFDPSCLMPTCPDYWTYS 231
Query: 812 GSLTTPPLLESVTWIVLREPISVSSGQMMKFRTLNFNKEGEPEHPMVDNWRPTQPLKNRQ 991
GSLTTPPL ESVTWI+ ++P+ V Q+ +FRTL F EGE E MVDN+RP QPL NR
Sbjct: 232 GSLTTPPLSESVTWIIKKQPVEVDHDQLEQFRTLLFTSEGEKEKRMVDNFRPLQPLMNRT 291
Query: 992 IRASFQ*D 1015
+R+SF+ D
Sbjct: 292 VRSSFRHD 299
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 54,385,291
Number of extensions: 1432490
Number of successful extensions: 4484
Number of sequences better than 1.0e-05: 27
Number of HSP's gapped: 4413
Number of HSP's successfully gapped: 27
Length of query: 490
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 383
Effective length of database: 14,770,016
Effective search space: 5656916128
Effective search space used: 5656916128
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003078
(1471 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_033931.4| carbonic anhydrase 2 [Mus musculus]. 439 e-123
Alignment gi|NP_078771.1| carbonic anhydrase 13 [Mus musculus]. 337 1e-92
Alignment gi|NP_031632.2| carbonic anhydrase 3 [Mus musculus]. 330 2e-90
Alignment gi|NP_001077426.1| carbonic anhydrase 1 [Mus musculus]. 321 1e-87
Alignment gi|NP_033929.2| carbonic anhydrase 1 [Mus musculus]. 321 1e-87
Alignment gi|NP_444300.1| carbonic anhydrase 7 [Mus musculus]. 313 2e-85
Alignment gi|NP_851832.2| carbonic anhydrase 5B, mitochondrial precursor ... 289 4e-78
Alignment gi|NP_031634.2| carbonic anhydrase 5A, mitochondrial precursor ... 263 3e-70
Alignment gi|NP_031618.2| carbonic anhydrase-related protein [Mus musculu... 197 2e-50
Alignment gi|NP_035927.1| carbonic anhydrase 14 precursor [Mus musculus]. 175 7e-44
>ref|NP_033931.4| carbonic anhydrase 2 [Mus musculus].
Length = 260
Score = 439 bits (1129), Expect = e-123
Identities = 203/260 (78%), Positives = 227/260 (87%)
Frame = +2
Query: 230 MSHHWGYDKHNGPEHWHKDFPIAKGDRQSPVDINTSTAVHDPALKPLSLCYEQATSQRIV 409
MSHHWGY KHNGPE+WHKDFPIA GDRQSPVDI+T+TA HDPAL+PL + Y++A S+ IV
Sbjct: 1 MSHHWGYSKHNGPENWHKDFPIANGDRQSPVDIDTATAQHDPALQPLLISYDKAASKSIV 60
Query: 410 NNGHSFNVEFDSSQDKGVLEGGPLAGTYRLIQFHFHWGSSDGQGSEHTVDKKKYAAELHL 589
NNGHSFNVEFD SQD VL+GGPL+ +YRLIQFHFHWGSSDGQGSEHTV+KKKYAAELHL
Sbjct: 61 NNGHSFNVEFDDSQDNAVLKGGPLSDSYRLIQFHFHWGSSDGQGSEHTVNKKKYAAELHL 120
Query: 590 VHWNTKYKDFGEAAQQPDGLAVLGVFLKIGNAQPGLQKIVDVLDSIKTKGKSVEFTGFDP 769
VHWNTKY DFG+A QQPDGLAVLG+FLKIG A GLQK+++ L SIKTKGK F FDP
Sbjct: 121 VHWNTKYGDFGKAVQQPDGLAVLGIFLKIGPASQGLQKVLEALHSIKTKGKRAAFANFDP 180
Query: 770 RDLLPGSLDYWTYPGSLTTPPLLESVTWIVLREPISVSSGQMMKFRTLNFNKEGEPEHPM 949
LLPG+LDYWTYPGSLTTPPLLE VTWIVLREPI+VSS QM FRTLNFN+EG+ E M
Sbjct: 181 CSLLPGNLDYWTYPGSLTTPPLLECVTWIVLREPITVSSEQMSHFRTLNFNEEGDAEEAM 240
Query: 950 VDNWRPTQPLKNRQIRASFQ 1009
VDNWRP QPLKNR+I+ASF+
Sbjct: 241 VDNWRPAQPLKNRKIKASFK 260
>ref|NP_078771.1| carbonic anhydrase 13 [Mus musculus].
Length = 262
Score = 337 bits (865), Expect = 1e-92
Identities = 160/256 (62%), Positives = 195/256 (76%), Gaps = 1/256 (0%)
Frame = +2
Query: 242 WGYDKHNGPEHWHKDFPIAKGDRQSPVDINTSTAVHDPALKPLSLCYEQATSQRIVNNGH 421
WGY +HNGP HW++ FPIA GD+QSP++I T +D +L+PLS+ Y+ A+++ I N+GH
Sbjct: 6 WGYGEHNGPIHWNELFPIADGDQQSPIEIKTKEVKYDSSLRPLSIKYDPASAKIISNSGH 65
Query: 422 SFNVEFDSSQDKGVLEGGPLAGTYRLIQFHFHWGSSDGQGSEHTVDKKKYAAELHLVHWN 601
SFNV+FD ++DK VL GGPL G YRL QFH HWGS+D GSEH VD +YAAELH+VHWN
Sbjct: 66 SFNVDFDDTEDKSVLRGGPLTGNYRLRQFHLHWGSADDHGSEHVVDGVRYAAELHVVHWN 125
Query: 602 T-KYKDFGEAAQQPDGLAVLGVFLKIGNAQPGLQKIVDVLDSIKTKGKSVEFTGFDPRDL 778
+ KY F EAA + DGLAVLGVFL+IG P LQKI D+LDSIK KGK FT FDP L
Sbjct: 126 SDKYPSFVEAAHESDGLAVLGVFLQIGEHNPQLQKITDILDSIKEKGKQTRFTNFDPLCL 185
Query: 779 LPGSLDYWTYPGSLTTPPLLESVTWIVLREPISVSSGQMMKFRTLNFNKEGEPEHPMVDN 958
LP S DYWTYPGSLT PPLLESVTWIVL++PIS+SS Q+ +FR+L EGE ++ N
Sbjct: 186 LPSSWDYWTYPGSLTVPPLLESVTWIVLKQPISISSQQLARFRSLLCTAEGESAAFLLSN 245
Query: 959 WRPTQPLKNRQIRASF 1006
RP QPLK R++RASF
Sbjct: 246 HRPPQPLKGRRVRASF 261
>ref|NP_031632.2| carbonic anhydrase 3 [Mus musculus].
Length = 260
Score = 330 bits (845), Expect = 2e-90
Identities = 149/260 (57%), Positives = 188/260 (72%)
Frame = +2
Query: 230 MSHHWGYDKHNGPEHWHKDFPIAKGDRQSPVDINTSTAVHDPALKPLSLCYEQATSQRIV 409
M+ WGY HNGP+HWH+ +PIAKGD QSP++++T HDP+L+P S Y+ +++ I+
Sbjct: 1 MAKEWGYASHNGPDHWHELYPIAKGDNQSPIELHTKDIKHDPSLQPWSASYDPGSAKTIL 60
Query: 410 NNGHSFNVEFDSSQDKGVLEGGPLAGTYRLIQFHFHWGSSDGQGSEHTVDKKKYAAELHL 589
NNG + V FD + D+ +L GGPL+G YRL QFH HWGSSD GSEHTVD KYAAELHL
Sbjct: 61 NNGKTCRVVFDDTYDRSMLRGGPLSGPYRLRQFHLHWGSSDDHGSEHTVDGVKYAAELHL 120
Query: 590 VHWNTKYKDFGEAAQQPDGLAVLGVFLKIGNAQPGLQKIVDVLDSIKTKGKSVEFTGFDP 769
VHWN KY FGEA +QPDG+AV+G+FLKIG + Q ++D LD IKTKGK FT FDP
Sbjct: 121 VHWNPKYNTFGEALKQPDGIAVVGIFLKIGREKGEFQILLDALDKIKTKGKEAPFTHFDP 180
Query: 770 RDLLPGSLDYWTYPGSLTTPPLLESVTWIVLREPISVSSGQMMKFRTLNFNKEGEPEHPM 949
L P DYWTY GS TTPP E + W++L+EP++VSS QM K R+L + E EP P+
Sbjct: 181 SCLFPACRDYWTYHGSFTTPPCEECIVWLLLKEPMTVSSDQMAKLRSLFSSAENEPPVPL 240
Query: 950 VDNWRPTQPLKNRQIRASFQ 1009
V NWRP QP+K R +RASF+
Sbjct: 241 VGNWRPPQPVKGRVVRASFK 260
>ref|NP_001077426.1| carbonic anhydrase 1 [Mus musculus].
Length = 261
Score = 321 bits (822), Expect = 1e-87
Identities = 152/259 (58%), Positives = 189/259 (72%), Gaps = 1/259 (0%)
Frame = +2
Query: 233 SHHWGYDKHNGPEHWHKDFPIAKGDRQSPVDINTSTAVHDPALKPLSLCYEQATSQRIVN 412
S WGY NGP+ W K +PIA G+ QSP+DI TS A HD +LKPLS+ Y AT++ IVN
Sbjct: 3 SADWGYGSENGPDQWSKLYPIANGNNQSPIDIKTSEANHDSSLKPLSISYNPATAKEIVN 62
Query: 413 NGHSFNVEFDSSQDKGVLEGGPLAGTYRLIQFHFHWGSSDGQGSEHTVDKKKYAAELHLV 592
GHSF+V FD S ++ VL+GGPLA +YRL QFHFHWG+S+ GSEHTVD +Y+ ELHLV
Sbjct: 63 VGHSFHVIFDDSSNQSVLKGGPLADSYRLTQFHFHWGNSNDHGSEHTVDGTRYSGELHLV 122
Query: 593 HWNT-KYKDFGEAAQQPDGLAVLGVFLKIGNAQPGLQKIVDVLDSIKTKGKSVEFTGFDP 769
HWN+ KY EA + DGLA+LGV +K+G A P LQK++D L+S+KTKGK FT FDP
Sbjct: 123 HWNSAKYSSASEAISKADGLAILGVLMKVGPANPSLQKVLDALNSVKTKGKRAPFTNFDP 182
Query: 770 RDLLPGSLDYWTYPGSLTTPPLLESVTWIVLREPISVSSGQMMKFRTLNFNKEGEPEHPM 949
LLP SLDYWTY GSLT PPL ESVTW++ ++ IS+S Q+ + R L + EGEP P+
Sbjct: 183 SSLLPSSLDYWTYFGSLTHPPLHESVTWVICKDSISLSPEQLAQLRGLLSSAEGEPAVPV 242
Query: 950 VDNWRPTQPLKNRQIRASF 1006
+ N RP QPLK R +RASF
Sbjct: 243 LSNHRPPQPLKGRTVRASF 261
>ref|NP_033929.2| carbonic anhydrase 1 [Mus musculus].
Length = 261
Score = 321 bits (822), Expect = 1e-87
Identities = 152/259 (58%), Positives = 189/259 (72%), Gaps = 1/259 (0%)
Frame = +2
Query: 233 SHHWGYDKHNGPEHWHKDFPIAKGDRQSPVDINTSTAVHDPALKPLSLCYEQATSQRIVN 412
S WGY NGP+ W K +PIA G+ QSP+DI TS A HD +LKPLS+ Y AT++ IVN
Sbjct: 3 SADWGYGSENGPDQWSKLYPIANGNNQSPIDIKTSEANHDSSLKPLSISYNPATAKEIVN 62
Query: 413 NGHSFNVEFDSSQDKGVLEGGPLAGTYRLIQFHFHWGSSDGQGSEHTVDKKKYAAELHLV 592
GHSF+V FD S ++ VL+GGPLA +YRL QFHFHWG+S+ GSEHTVD +Y+ ELHLV
Sbjct: 63 VGHSFHVIFDDSSNQSVLKGGPLADSYRLTQFHFHWGNSNDHGSEHTVDGTRYSGELHLV 122
Query: 593 HWNT-KYKDFGEAAQQPDGLAVLGVFLKIGNAQPGLQKIVDVLDSIKTKGKSVEFTGFDP 769
HWN+ KY EA + DGLA+LGV +K+G A P LQK++D L+S+KTKGK FT FDP
Sbjct: 123 HWNSAKYSSASEAISKADGLAILGVLMKVGPANPSLQKVLDALNSVKTKGKRAPFTNFDP 182
Query: 770 RDLLPGSLDYWTYPGSLTTPPLLESVTWIVLREPISVSSGQMMKFRTLNFNKEGEPEHPM 949
LLP SLDYWTY GSLT PPL ESVTW++ ++ IS+S Q+ + R L + EGEP P+
Sbjct: 183 SSLLPSSLDYWTYFGSLTHPPLHESVTWVICKDSISLSPEQLAQLRGLLSSAEGEPAVPV 242
Query: 950 VDNWRPTQPLKNRQIRASF 1006
+ N RP QPLK R +RASF
Sbjct: 243 LSNHRPPQPLKGRTVRASF 261
>ref|NP_444300.1| carbonic anhydrase 7 [Mus musculus].
Length = 264
Score = 313 bits (802), Expect = 2e-85
Identities = 150/262 (57%), Positives = 185/262 (70%), Gaps = 1/262 (0%)
Frame = +2
Query: 227 TMSHHWGYDKHNGPEHWHKDFPIAKGDRQSPVDINTSTAVHDPALKPLSLCYEQATSQRI 406
T H WGY + +GP +WHK +PIA+GDRQSP++I +S AV+ P+L+PL L YE S I
Sbjct: 2 TGHHCWGYGQDDGPSNWHKLYPIAQGDRQSPINIISSQAVYSPSLQPLELFYEACMSLSI 61
Query: 407 VNNGHSFNVEFDSSQDKGVLEGGPLAGTYRLIQFHFHWGSSDGQGSEHTVDKKKYAAELH 586
NNGHS V+F+ S D+ V+ GGPL G YRL Q HFHWG GSEHTVD K + +ELH
Sbjct: 62 TNNGHSVQVDFNDSDDRTVVSGGPLEGPYRLKQLHFHWGKKRDMGSEHTVDGKSFPSELH 121
Query: 587 LVHWNT-KYKDFGEAAQQPDGLAVLGVFLKIGNAQPGLQKIVDVLDSIKTKGKSVEFTGF 763
LVHWN KY FGEAA PDGLAV+GVFL+ G+ P + ++ D L ++ K +F+ F
Sbjct: 122 LVHWNAKKYSTFGEAAAAPDGLAVVGVFLETGDEHPSMNRLTDALYMVRFKDTKAQFSCF 181
Query: 764 DPRDLLPGSLDYWTYPGSLTTPPLLESVTWIVLREPISVSSGQMMKFRTLNFNKEGEPEH 943
+P+ LLP S YWTYPGSLTTPPL ESVTWIVLREPI +S QM KFR+L F E +
Sbjct: 182 NPKCLLPTSRHYWTYPGSLTTPPLSESVTWIVLREPIRISERQMEKFRSLLFTSEDDERI 241
Query: 944 PMVDNWRPTQPLKNRQIRASFQ 1009
MVDN+RP QPLK R ++ASFQ
Sbjct: 242 HMVDNFRPPQPLKGRVVKASFQ 263
>ref|NP_851832.2| carbonic anhydrase 5B, mitochondrial precursor [Mus musculus].
Length = 317
Score = 289 bits (739), Expect = 4e-78
Identities = 144/251 (57%), Positives = 175/251 (69%), Gaps = 1/251 (0%)
Frame = +2
Query: 266 PEHWHKDFPIAKGDRQSPVDINTSTAVHDPALKPLSLCYEQATSQRIVNNGHSFNVEFDS 445
P W + GDRQSP++I +V+DP LKPL++ Y+ AT I NNG+SF VEF+
Sbjct: 49 PPLWENLDLVPAGDRQSPINIRWRDSVYDPGLKPLTISYDPATCLHIWNNGYSFLVEFED 108
Query: 446 SQDKGVLEGGPLAGTYRLIQFHFHWGSSDGQGSEHTVDKKKYAAELHLVHWNT-KYKDFG 622
S DK V+EGGPL YRL QFHFHWG+ D GSEHTVD K Y AELHLVHWN K++ F
Sbjct: 109 STDKSVVEGGPLEHNYRLKQFHFHWGAIDAWGSEHTVDSKCYPAELHLVHWNAVKFESFE 168
Query: 623 EAAQQPDGLAVLGVFLKIGNAQPGLQKIVDVLDSIKTKGKSVEFTGFDPRDLLPGSLDYW 802
+AA + +GLAV+GVFLK+G LQK+VD L SIK K VEF FDP L+P DYW
Sbjct: 169 DAALEENGLAVIGVFLKLGKHHKELQKLVDTLPSIKHKDTLVEFGSFDPSCLMPTCPDYW 228
Query: 803 TYPGSLTTPPLLESVTWIVLREPISVSSGQMMKFRTLNFNKEGEPEHPMVDNWRPTQPLK 982
TY GSLTTPPL ESVTWI+ ++P+ V Q+ +FRTL F EGE E MVDN+RP QPL
Sbjct: 229 TYSGSLTTPPLSESVTWIIKKQPVEVDRDQLEQFRTLLFTSEGEKEKRMVDNFRPLQPLM 288
Query: 983 NRQIRASFQ*D 1015
NR +R+SF+ D
Sbjct: 289 NRTVRSSFRHD 299
>ref|NP_031634.2| carbonic anhydrase 5A, mitochondrial precursor [Mus musculus].
Length = 299
Score = 263 bits (672), Expect = 3e-70
Identities = 134/272 (49%), Positives = 173/272 (63%), Gaps = 9/272 (3%)
Frame = +2
Query: 227 TMSHHWGYDKHNGPEH--------WHKDFPIAKGDRQSPVDINTSTAVHDPALKPLSLCY 382
T W + EH W A+G RQSP++I +V+DP L PL + Y
Sbjct: 22 TGPQRWRFQHSCAEEHSNCARHPLWTGPVSSAEGTRQSPINIQWKDSVYDPQLAPLRVSY 81
Query: 383 EQATSQRIVNNGHSFNVEFDSSQDKGVLEGGPLAGTYRLIQFHFHWGSSDGQGSEHTVDK 562
+ A+ + + N G+ F VEFD S + + GGPL YRL QFHFHWG++D GSEH VD
Sbjct: 82 DAASCRYLWNTGYFFQVEFDDSCEDSGISGGPLGNHYRLKQFHFHWGATDEWGSEHAVDG 141
Query: 563 KKYAAELHLVHWN-TKYKDFGEAAQQPDGLAVLGVFLKIGNAQPGLQKIVDVLDSIKTKG 739
Y AELHLVHWN TKY+++ +A+ +GLAV+GVFLK+G LQK+VDVL ++ K
Sbjct: 142 HTYPAELHLVHWNSTKYENYKKASVGENGLAVIGVFLKLGAHHQALQKLVDVLPEVRHKD 201
Query: 740 KSVEFTGFDPRDLLPGSLDYWTYPGSLTTPPLLESVTWIVLREPISVSSGQMMKFRTLNF 919
V FDP LLP DYWTYPGSLTTPPL ESVTWIV + P+ VS Q+ FRTL F
Sbjct: 202 TQVAMGPFDPSCLLPACRDYWTYPGSLTTPPLAESVTWIVQKTPVEVSPSQLSTFRTLLF 261
Query: 920 NKEGEPEHPMVDNWRPTQPLKNRQIRASFQ*D 1015
+ GE E MV+N+RP QPL++R++R+SF+ D
Sbjct: 262 SGRGEEEDVMVNNYRPLQPLRDRKLRSSFRLD 293
>ref|NP_031618.2| carbonic anhydrase-related protein [Mus musculus].
Length = 291
Score = 197 bits (500), Expect = 2e-50
Identities = 111/268 (41%), Positives = 158/268 (58%), Gaps = 12/268 (4%)
Frame = +2
Query: 242 WGYDKHNGPEHWHKDFPIAKGDRQSPVDINTSTAVHDPALKPLSLC--YEQATSQRIVNN 415
WGY++ G E W FP A G+ QSP+++N+ A +DP+L + L Y + N+
Sbjct: 30 WGYEE--GVE-WGLVFPDANGEYQSPINLNSREARYDPSLLDVRLSPNYVVCRDCEVTND 86
Query: 416 GHSFNVEFDSSQDKGVLEGGPL--AGTYRLIQFHFHWGSSDGQGSEHTVDKKKYAAELHL 589
GH+ V S K VL GGPL + L + FHWG + +GSEHTV+ K + ELHL
Sbjct: 87 GHTIQVILKS---KSVLSGGPLPQGQEFELYEVRFHWGRENQRGSEHTVNFKAFPMELHL 143
Query: 590 VHWN-TKYKDFGEAAQQPDGLAVLGVFLKIGNAQPGLQKIVDVLDSIKTKGKSVEFTGFD 766
+HWN T + EA +P G+A++ +F++IG GL+ + ++L I+ KGKS F+
Sbjct: 144 IHWNSTLFGSIDEAVGKPHGIAIIALFVQIGKEHVGLKAVTEILQDIQYKGKSKTIPCFN 203
Query: 767 PRDLLPGSL--DYWTYPGSLTTPPLLESVTWIVLREPISVSSGQMMKFRTLNFNKEGEP- 937
P LLP L DYW Y GSLT PP E VTWI+ R P+++S Q+ +FR L + +G
Sbjct: 204 PNTLLPDPLLRDYWVYEGSLTIPPCSEGVTWILFRYPLTISQMQIEEFRRLRTHVKGAEL 263
Query: 938 ----EHPMVDNWRPTQPLKNRQIRASFQ 1009
+ + DN+RPTQPL +R IRA+FQ
Sbjct: 264 VEGCDGILGDNFRPTQPLSDRVIRAAFQ 291
>ref|NP_035927.1| carbonic anhydrase 14 precursor [Mus musculus].
Length = 337
Score = 175 bits (444), Expect = 7e-44
Identities = 99/269 (36%), Positives = 145/269 (53%), Gaps = 7/269 (2%)
Frame = +2
Query: 236 HHWGYDKHNGPEHWHKDFPIAKGDRQSPVDINTSTAVHDPALKPLSLC-YEQATSQRIV- 409
HHW Y+ +G +HW +P GD QSP++I T + + DP L + Y+Q ++ +
Sbjct: 20 HHWTYEGPHGQDHWPTSYPECGGDAQSPINIQTDSVIFDPDLPAVQPHGYDQLGTEPLDL 79
Query: 410 -NNGHSFNVEFDSSQDKGVLEGGPLAGTYRLIQFHFHWGSSDG-QGSEHTVDKKKYAAEL 583
NNGH+ + + L G L Y Q H HWG +GSEH ++ + AAEL
Sbjct: 80 HNNGHTVQLSLPPT-----LHLGGLPRKYTAAQLHLHWGQRGSLEGSEHQINSEATAAEL 134
Query: 584 HLVHWNTK-YKDFGEAAQQPDGLAVLGVFLKIGNAQ-PGLQKIVDVLDSIKTKGKSVEFT 757
H+VH++++ Y EAAQ+P GLAVLG+ +++G + P I+ L I+ K +
Sbjct: 135 HVVHYDSQSYSSLSEAAQKPQGLAVLGILIEVGETENPAYDHILSRLHEIRYKDQKTSVP 194
Query: 758 GFDPRDLLPGSLD-YWTYPGSLTTPPLLESVTWIVLREPISVSSGQMMKFRTLNFNKEGE 934
F R+L P L+ ++ Y GSLTTPP +SV W V +S GQ+ K + + E +
Sbjct: 195 PFSVRELFPQQLEQFFRYNGSLTTPPCYQSVLWTVFNRRAQISMGQLEKLQETLSSTEED 254
Query: 935 PEHPMVDNWRPTQPLKNRQIRASFQ*DGP 1021
P P+V N+R QPL R I ASF GP
Sbjct: 255 PSEPLVQNYRVPQPLNQRTIFASFIQAGP 283
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 46,308,034
Number of extensions: 1210450
Number of successful extensions: 3798
Number of sequences better than 1.0e-05: 19
Number of HSP's gapped: 3752
Number of HSP's successfully gapped: 19
Length of query: 490
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 385
Effective length of database: 12,463,779
Effective search space: 4798554915
Effective search space used: 4798554915
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003078
(1471 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001927840.1| PREDICTED: carbonic anhydrase 2 [Sus scrofa]. 550 e-157
Alignment gi|XP_003355077.1| PREDICTED: carbonic anhydrase 3-like [Sus sc... 402 e-112
Alignment gi|NP_001008688.1| carbonic anhydrase 3 [Sus scrofa]. 318 4e-87
Alignment gi|XP_001924218.1| PREDICTED: carbonic anhydrase 1 [Sus scrofa]. 315 5e-86
Alignment gi|XP_001924497.2| PREDICTED: carbonic anhydrase 13 [Sus scrofa]. 302 4e-82
Alignment gi|XP_001926850.1| PREDICTED: carbonic anhydrase 5B, mitochondr... 286 2e-77
Alignment gi|XP_001924916.3| PREDICTED: carbonic anhydrase 14-like [Sus s... 166 3e-41
Alignment gi|NP_001137588.1| carbonic anhydrase 6 [Sus scrofa]. 163 2e-40
Alignment gi|XP_003131649.2| PREDICTED: carbonic anhydrase-related protei... 148 7e-36
Alignment gi|XP_001925555.2| PREDICTED: carbonic anhydrase 9 [Sus scrofa]. 147 1e-35
>ref|XP_001927840.1| PREDICTED: carbonic anhydrase 2 [Sus scrofa].
Length = 260
Score = 550 bits (1417), Expect = e-157
Identities = 260/260 (100%), Positives = 260/260 (100%)
Frame = +2
Query: 230 MSHHWGYDKHNGPEHWHKDFPIAKGDRQSPVDINTSTAVHDPALKPLSLCYEQATSQRIV 409
MSHHWGYDKHNGPEHWHKDFPIAKGDRQSPVDINTSTAVHDPALKPLSLCYEQATSQRIV
Sbjct: 1 MSHHWGYDKHNGPEHWHKDFPIAKGDRQSPVDINTSTAVHDPALKPLSLCYEQATSQRIV 60
Query: 410 NNGHSFNVEFDSSQDKGVLEGGPLAGTYRLIQFHFHWGSSDGQGSEHTVDKKKYAAELHL 589
NNGHSFNVEFDSSQDKGVLEGGPLAGTYRLIQFHFHWGSSDGQGSEHTVDKKKYAAELHL
Sbjct: 61 NNGHSFNVEFDSSQDKGVLEGGPLAGTYRLIQFHFHWGSSDGQGSEHTVDKKKYAAELHL 120
Query: 590 VHWNTKYKDFGEAAQQPDGLAVLGVFLKIGNAQPGLQKIVDVLDSIKTKGKSVEFTGFDP 769
VHWNTKYKDFGEAAQQPDGLAVLGVFLKIGNAQPGLQKIVDVLDSIKTKGKSVEFTGFDP
Sbjct: 121 VHWNTKYKDFGEAAQQPDGLAVLGVFLKIGNAQPGLQKIVDVLDSIKTKGKSVEFTGFDP 180
Query: 770 RDLLPGSLDYWTYPGSLTTPPLLESVTWIVLREPISVSSGQMMKFRTLNFNKEGEPEHPM 949
RDLLPGSLDYWTYPGSLTTPPLLESVTWIVLREPISVSSGQMMKFRTLNFNKEGEPEHPM
Sbjct: 181 RDLLPGSLDYWTYPGSLTTPPLLESVTWIVLREPISVSSGQMMKFRTLNFNKEGEPEHPM 240
Query: 950 VDNWRPTQPLKNRQIRASFQ 1009
VDNWRPTQPLKNRQIRASFQ
Sbjct: 241 VDNWRPTQPLKNRQIRASFQ 260
>ref|XP_003355077.1| PREDICTED: carbonic anhydrase 3-like [Sus scrofa].
Length = 260
Score = 402 bits (1033), Expect = e-112
Identities = 186/260 (71%), Positives = 207/260 (79%)
Frame = +2
Query: 230 MSHHWGYDKHNGPEHWHKDFPIAKGDRQSPVDINTSTAVHDPALKPLSLCYEQATSQRIV 409
MSHHWGYDKHNGPEHWHKDFPIAKGDRQSPVDINTSTAVHDPALKPLSLCYEQATSQRIV
Sbjct: 1 MSHHWGYDKHNGPEHWHKDFPIAKGDRQSPVDINTSTAVHDPALKPLSLCYEQATSQRIV 60
Query: 410 NNGHSFNVEFDSSQDKGVLEGGPLAGTYRLIQFHFHWGSSDGQGSEHTVDKKKYAAELHL 589
NNGHSFNVEFDSSQDKGVL GGPL YRL QFH HWGSSD GSEHTVD KYAAELHL
Sbjct: 61 NNGHSFNVEFDSSQDKGVLRGGPLTAAYRLRQFHLHWGSSDDHGSEHTVDGVKYAAELHL 120
Query: 590 VHWNTKYKDFGEAAQQPDGLAVLGVFLKIGNAQPGLQKIVDVLDSIKTKGKSVEFTGFDP 769
VHWN+KY F A + PDG+AV+G+FLKIG + Q ++D LD IKTKGK FT F+P
Sbjct: 121 VHWNSKYNSFATALKHPDGVAVVGIFLKIGREKGEFQLVLDALDKIKTKGKEAPFTNFNP 180
Query: 770 RDLLPGSLDYWTYPGSLTTPPLLESVTWIVLREPISVSSGQMMKFRTLNFNKEGEPEHPM 949
L P DYWTY GS TTPP E + W++L+EPI+VSS QM K R+L + E EP P+
Sbjct: 181 SCLFPACRDYWTYHGSFTTPPCEECIVWLLLKEPITVSSDQMAKLRSLYSSAENEPPVPL 240
Query: 950 VDNWRPTQPLKNRQIRASFQ 1009
V NWRP QP+K R ++ASF+
Sbjct: 241 VRNWRPPQPIKGRIVKASFK 260
>ref|NP_001008688.1| carbonic anhydrase 3 [Sus scrofa].
Length = 260
Score = 318 bits (816), Expect = 4e-87
Identities = 143/260 (55%), Positives = 183/260 (70%)
Frame = +2
Query: 230 MSHHWGYDKHNGPEHWHKDFPIAKGDRQSPVDINTSTAVHDPALKPLSLCYEQATSQRIV 409
M+ WGY HNGP+HWH+ +PIAKGD QSP++++T HDP+L P + Y+ +++ I+
Sbjct: 1 MAKEWGYADHNGPDHWHELYPIAKGDNQSPIELHTKDIKHDPSLLPWTASYDPGSAKTIL 60
Query: 410 NNGHSFNVEFDSSQDKGVLEGGPLAGTYRLIQFHFHWGSSDGQGSEHTVDKKKYAAELHL 589
NNG + V FD + D+ +L GGPL YRL QFH HWGSSD GSEHTVD KYAAELHL
Sbjct: 61 NNGKTCRVVFDDTYDRSMLRGGPLTAAYRLRQFHLHWGSSDDHGSEHTVDGVKYAAELHL 120
Query: 590 VHWNTKYKDFGEAAQQPDGLAVLGVFLKIGNAQPGLQKIVDVLDSIKTKGKSVEFTGFDP 769
VHWN+KY F A + PDG+AV+G+FLKIG + Q ++D LD IKTKGK FT F+P
Sbjct: 121 VHWNSKYNSFATALKHPDGVAVVGIFLKIGREKGEFQLVLDALDKIKTKGKEAPFTNFNP 180
Query: 770 RDLLPGSLDYWTYPGSLTTPPLLESVTWIVLREPISVSSGQMMKFRTLNFNKEGEPEHPM 949
L P DYWTY GS TTPP E + W++L+EPI+VSS QM K R+L + E EP P+
Sbjct: 181 SCLFPACRDYWTYHGSFTTPPCEECIVWLLLKEPITVSSDQMAKLRSLYSSAENEPPVPL 240
Query: 950 VDNWRPTQPLKNRQIRASFQ 1009
V NWRP QP+K R ++ASF+
Sbjct: 241 VRNWRPPQPIKGRIVKASFK 260
>ref|XP_001924218.1| PREDICTED: carbonic anhydrase 1 [Sus scrofa].
Length = 261
Score = 315 bits (806), Expect = 5e-86
Identities = 147/256 (57%), Positives = 186/256 (72%), Gaps = 1/256 (0%)
Frame = +2
Query: 242 WGYDKHNGPEHWHKDFPIAKGDRQSPVDINTSTAVHDPALKPLSLCYEQATSQRIVNNGH 421
WGYD GPEHW K +PIA G+ QSP+DI TS HD +LKP+S+ Y AT++ I+N GH
Sbjct: 6 WGYDGEYGPEHWSKVYPIANGNNQSPIDIKTSETKHDTSLKPISVSYNPATAKEIINVGH 65
Query: 422 SFNVEFDSSQDKGVLEGGPLAGTYRLIQFHFHWGSSDGQGSEHTVDKKKYAAELHLVHWN 601
SF+V F+ + ++ VL+ GPL+ +YRL+QFHFHWG +D GSEH VD KY+AELH+VHWN
Sbjct: 66 SFHVNFEDNDNRSVLKDGPLSESYRLLQFHFHWGKTDDYGSEHLVDGAKYSAELHIVHWN 125
Query: 602 T-KYKDFGEAAQQPDGLAVLGVFLKIGNAQPGLQKIVDVLDSIKTKGKSVEFTGFDPRDL 778
+ KY EAA DGLA++GV +K+G A P LQK++D L IK KGK FT FDP L
Sbjct: 126 SAKYSSAAEAASHADGLAIIGVLVKVGQANPNLQKVLDALKGIKYKGKKAPFTNFDPSVL 185
Query: 779 LPGSLDYWTYPGSLTTPPLLESVTWIVLREPISVSSGQMMKFRTLNFNKEGEPEHPMVDN 958
LP SLDYWTY GSLT PPL ESV WI+L+E IS+SS Q+ +FR+L N EG+ + P+ N
Sbjct: 186 LPSSLDYWTYFGSLTHPPLHESVNWIILKENISISSDQLAQFRSLLSNAEGDKDVPIKHN 245
Query: 959 WRPTQPLKNRQIRASF 1006
RP QPLK R ++ASF
Sbjct: 246 NRPPQPLKGRIVKASF 261
>ref|XP_001924497.2| PREDICTED: carbonic anhydrase 13 [Sus scrofa].
Length = 243
Score = 302 bits (773), Expect = 4e-82
Identities = 139/219 (63%), Positives = 172/219 (78%), Gaps = 1/219 (0%)
Frame = +2
Query: 242 WGYDKHNGPEHWHKDFPIAKGDRQSPVDINTSTAVHDPALKPLSLCYEQATSQRIVNNGH 421
WGY +HNGP HW++ FPIA GD+QSP++I T +D +L+PLS+ Y+ ++++ I N+GH
Sbjct: 6 WGYGEHNGPVHWNEFFPIADGDQQSPIEIKTKEVKYDSSLRPLSIKYDPSSAKIISNSGH 65
Query: 422 SFNVEFDSSQDKGVLEGGPLAGTYRLIQFHFHWGSSDGQGSEHTVDKKKYAAELHLVHWN 601
SF+V+FD ++DK VL GGPL G+YRL QFH HWGS+D GSEH VD KYAAELH+VHWN
Sbjct: 66 SFSVDFDDTEDKSVLRGGPLTGSYRLRQFHLHWGSADDHGSEHVVDGVKYAAELHVVHWN 125
Query: 602 T-KYKDFGEAAQQPDGLAVLGVFLKIGNAQPGLQKIVDVLDSIKTKGKSVEFTGFDPRDL 778
+ KY F EAA +PDGLAVLGVFL+IG LQKI D+LDSIK KGK FT FDP L
Sbjct: 126 SDKYPSFVEAAHEPDGLAVLGVFLQIGEHNSQLQKITDILDSIKEKGKQTRFTNFDPLSL 185
Query: 779 LPGSLDYWTYPGSLTTPPLLESVTWIVLREPISVSSGQM 895
LP S DYWTYPGSLT PPLLESVTWI+L++PI++SS Q+
Sbjct: 186 LPPSWDYWTYPGSLTVPPLLESVTWIILKQPINISSQQV 224
>ref|XP_001926850.1| PREDICTED: carbonic anhydrase 5B, mitochondrial-like [Sus scrofa].
Length = 317
Score = 286 bits (732), Expect = 2e-77
Identities = 140/248 (56%), Positives = 175/248 (70%), Gaps = 1/248 (0%)
Frame = +2
Query: 275 WHKDFPIAKGDRQSPVDINTSTAVHDPALKPLSLCYEQATSQRIVNNGHSFNVEFDSSQD 454
W + G+RQSP++I +V+DP LKPL++ Y+ T + NNG+SF VEF+ S D
Sbjct: 52 WESADLVPAGERQSPINIRWRDSVYDPGLKPLTISYDPTTCLHVWNNGYSFLVEFEDSTD 111
Query: 455 KGVLEGGPLAGTYRLIQFHFHWGSSDGQGSEHTVDKKKYAAELHLVHWNT-KYKDFGEAA 631
K V+EGGPL YRL QFHFHWG+ D GSEHTVD K Y AELHLVHWN K+++F +AA
Sbjct: 112 KSVIEGGPLEHNYRLKQFHFHWGAIDAWGSEHTVDSKCYPAELHLVHWNAVKFENFEDAA 171
Query: 632 QQPDGLAVLGVFLKIGNAQPGLQKIVDVLDSIKTKGKSVEFTGFDPRDLLPGSLDYWTYP 811
Q+ +GLAV+GVFLK+G +QK+VD L SIK K VEF FDP L+P DYWTY
Sbjct: 172 QEENGLAVIGVFLKLGKHHKEVQKLVDTLPSIKHKDTLVEFGSFDPSCLMPTCPDYWTYS 231
Query: 812 GSLTTPPLLESVTWIVLREPISVSSGQMMKFRTLNFNKEGEPEHPMVDNWRPTQPLKNRQ 991
GSLTTPPL ESVTWI+ ++PI V+ Q+ +FRTL F +GE E MVDN+RP QPL NR
Sbjct: 232 GSLTTPPLSESVTWIIKKQPIEVAHDQLEQFRTLLFTSKGETEKRMVDNFRPLQPLMNRT 291
Query: 992 IRASFQ*D 1015
+R+SF D
Sbjct: 292 VRSSFHHD 299
>ref|XP_001924916.3| PREDICTED: carbonic anhydrase 14-like [Sus scrofa].
Length = 340
Score = 166 bits (420), Expect = 3e-41
Identities = 101/264 (38%), Positives = 142/264 (53%), Gaps = 8/264 (3%)
Frame = +2
Query: 239 HWGYDKHNGPEHWHKDFPIAKGDRQSPVDINTSTAVHDPALKPLSLC-YEQATSQRIV-- 409
HW Y+ +G +HW +P + QSP++I T + DP L PL YEQ ++ +
Sbjct: 21 HWTYEGPHGQDHWPASYPECGSNAQSPINIQTDSVTFDPELLPLQPHGYEQPGTEPLDLH 80
Query: 410 NNGHSFNVEFDSSQDKGV-LEGGPLAGTYRLIQFHFHWGSSDGQG-SEHTVDKKKYAAEL 583
NNGH+ S + LEG P Y Q H HWG G SEH ++ + AAEL
Sbjct: 81 NNGHTGKNAXQLSLPPTLHLEGLPRK--YVAAQLHLHWGQKGSPGGSEHKINGEATAAEL 138
Query: 584 HLVHWNTK-YKDFGEAAQQPDGLAVLGVFLKIGNAQ-PGLQKIVDVLDSIKTKGKSVEFT 757
H+VH++++ Y EAAQQP GLAVLG+ +++G + P + I+ L I+ K +
Sbjct: 139 HIVHYDSESYASLSEAAQQPQGLAVLGILVEVGETENPAYEHILSHLHEIRHKDQRTSVP 198
Query: 758 GFDPRDLLPGSL-DYWTYPGSLTTPPLLESVTWIVLREPISVSSGQMMKFRTLNFNKEGE 934
F+ R LLP L ++ Y GSLTTPP +SV W V +S GQ+ K + F+ E E
Sbjct: 199 PFNVRGLLPPLLAQFFRYNGSLTTPPCYQSVLWTVFNRRAQISMGQLEKLQEALFSTEEE 258
Query: 935 PEHPMVDNWRPTQPLKNRQIRASF 1006
P +V N+R QPL R + ASF
Sbjct: 259 PSQLLVQNYRAPQPLNQRIVLASF 282
>ref|NP_001137588.1| carbonic anhydrase 6 [Sus scrofa].
Length = 317
Score = 163 bits (413), Expect = 2e-40
Identities = 93/264 (35%), Positives = 146/264 (55%), Gaps = 8/264 (3%)
Frame = +2
Query: 242 WGY-DKHNGPEHWHKDFPIAKGDRQSPVDINTSTAVHDPALKPLSLC-YEQATSQ-RIVN 412
W Y D HW +++P G RQSP+D+ + ++PAL+ LSL YE + ++N
Sbjct: 23 WTYSDGELDEAHWSREYPDCDGRRQSPIDVQRKSVQYNPALRALSLTGYEAQEGEFSMIN 82
Query: 413 NGHSFNVEFDSSQDKGVLEGGPLAGTYRLIQFHFHWGS--SDGQGSEHTVDKKKYAAELH 586
NGH+ + S+ +G Y Q HFHWG S+ GSEHT+D +Y E+H
Sbjct: 83 NGHTVQISLPSTMRLTAPDGTQ----YIAKQMHFHWGGAFSEISGSEHTIDGIRYVTEVH 138
Query: 587 LVHWNTKYKDFGEAAQQPDGLAVLGVFLKIGNAQPG--LQKIVDVLDSIKTKGKSVEFTG 760
+VH+N+KYK + EA PDGLAVL +I + + L +I+ G++ +
Sbjct: 139 VVHYNSKYKSYDEAQTAPDGLAVLAALFEIKDYAENTYYSDFISHLKNIRIPGQTTVLSS 198
Query: 761 FDPRDLLPGSL-DYWTYPGSLTTPPLLESVTWIVLREPISVSSGQMMKFRTLNFNKEGEP 937
+ +D+LP +L Y++Y GSLTTPP E+V W VL + + +S Q+ K + N + +
Sbjct: 199 LNLQDMLPENLHSYYSYQGSLTTPPCTENVHWFVLADTVKLSRTQVWKLQNSLLNDQNKT 258
Query: 938 EHPMVDNWRPTQPLKNRQIRASFQ 1009
H +++R TQPL +R + A+F+
Sbjct: 259 IH---NDYRRTQPLNHRVVEANFK 279
>ref|XP_003131649.2| PREDICTED: carbonic anhydrase-related protein 10-like [Sus scrofa].
Length = 328
Score = 148 bits (374), Expect = 7e-36
Identities = 82/239 (34%), Positives = 136/239 (56%), Gaps = 5/239 (2%)
Frame = +2
Query: 302 GDRQSPVDINTSTAVHDPALKPLSL-CYEQATSQRIVNNGHSFNVEFDSSQDKGVLEGGP 478
G RQSPV+I TS + DP L PL + + S + N G ++ D + GGP
Sbjct: 63 GKRQSPVNIETSHMIFDPFLTPLRINTGGRKVSGTMYNTGRHVSLRLDKEHLVNI-SGGP 121
Query: 479 LAGTYRLIQFHFHWGSSDGQGSEHTVDKKKYAAELHLVHWNTK-YKDFGEAAQQPDGLAV 655
+ ++RL + H+GS D QGSEH ++ + ++ E+ L+H+N + Y + EAA+ P+GL V
Sbjct: 122 MTYSHRLEEIRLHFGSEDSQGSEHLLNGQAFSGEVQLIHYNHELYTNVTEAAKSPNGLVV 181
Query: 656 LGVFLKIGNAQ-PGLQKIV--DVLDSIKTKGKSVEFTGFDPRDLLPGSLDYWTYPGSLTT 826
+ +F+K+ ++ P L +++ D + I K + G + +L P + + TY GS+T
Sbjct: 182 VSIFIKVSDSSNPFLNRMLNRDTITRITYKNDAYLLQGLNIEELYPETSSFITYDGSMTI 241
Query: 827 PPLLESVTWIVLREPISVSSGQMMKFRTLNFNKEGEPEHPMVDNWRPTQPLKNRQIRAS 1003
PP E+ +WI++ +P+ ++ QM R L+ N+ + M DN+RP QPL NR IR +
Sbjct: 242 PPCYETASWIIMNKPVYITRMQMHSLRLLSQNQPSQIFLSMSDNFRPVQPLNNRCIRTN 300
>ref|XP_001925555.2| PREDICTED: carbonic anhydrase 9 [Sus scrofa].
Length = 442
Score = 147 bits (372), Expect = 1e-35
Identities = 96/261 (36%), Positives = 130/261 (49%), Gaps = 5/261 (1%)
Frame = +2
Query: 239 HWGYDKHNGPEHWHKDFPIAKGDRQSPVDINTSTAVHDPALKPLSLCYEQATSQ---RIV 409
HW Y G W + P G QSPVDI PAL+PL L + Q R+
Sbjct: 121 HWRY---GGAPPWPQVSPACAGRFQSPVDIRPQLTAFCPALRPLELLGYELPPQPELRLR 177
Query: 410 NNGHSFNVEFDSSQDKGVLEGGPLAGTYRLIQFHFHWGSSDGQGSEHTVDKKKYAAELHL 589
NNGH+ + + L GP YR +Q H HWGS+ GSEHTV ++ AE+H+
Sbjct: 178 NNGHTVQLSLPPGLE---LSLGP-GQEYRALQLHLHWGSAGRPGSEHTVGGYRFPAEIHV 233
Query: 590 VHWNTKYKDFGEAAQQPDGLAVLGVFLKIG-NAQPGLQKIVDVLDSIKTKGKSVEFTGFD 766
VH +T + EA +P GLAVL FL+ G ++++ L I + G D
Sbjct: 234 VHLSTAFAKIDEALGRPRGLAVLAAFLQEGPEENSAYEQLLSHLGEIADEDSETWVPGLD 293
Query: 767 PRDLLPGSLD-YWTYPGSLTTPPLLESVTWIVLREPISVSSGQMMKFRTLNFNKEGEPEH 943
LLP L+ Y+ Y GSLTTPP + V W V E + +S+ Q+ TL+ + G +
Sbjct: 294 VSALLPSDLNRYFRYEGSLTTPPCAQGVVWTVFNETVKLSAKQL---HTLSDSLWGPDDS 350
Query: 944 PMVDNWRPTQPLKNRQIRASF 1006
+ N+R TQPL R I ASF
Sbjct: 351 RLQLNFRATQPLNGRIIEASF 371
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 34,087,328
Number of extensions: 904274
Number of successful extensions: 2776
Number of sequences better than 1.0e-05: 17
Number of HSP's gapped: 2738
Number of HSP's successfully gapped: 17
Length of query: 490
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 387
Effective length of database: 8,779,541
Effective search space: 3397682367
Effective search space used: 3397682367
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003078
(1471 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr04 1104 0.0
>Sscrofa_Chr04
|| Length = 143465943
Score = 1104 bits (557), Expect = 0.0
Identities = 575/581 (98%)
Strand = Plus / Minus
Query: 891 agatgatgaaattccgcaccctgaacttcaacaaggagggtgaacctgaacacccgatgg 950
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56158407 agatgatgaaattccgcaccctgaacttcaacaaggagggtgaacctgaacacccgatgg 56158348
Query: 951 tggacaactggcgcccaactcagccactgaaaaatagacaaatcagagcttccttccaat 1010
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56158347 tggacaactggcgcccaactcagccactgaaaaatagacaaatcagagcttccttccaat 56158288
Query: 1011 aagatggtcctagagacagcgtccagcgaagaatctttggctttcccttagcacaaatcc 1070
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56158287 aagatggtcctagagacagcgtccagcgaagaatctttggctttcccttagcacaaatcc 56158228
Query: 1071 accttggtgaactggtctctggctgccatgcatctggttttctagatccttcatctctca 1130
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56158227 accttggtgaactggtctctggctgccatgcatctggttttctagatccttcatctctca 56158168
Query: 1131 cctgacatgcttactactgaaatgtgaaaacctagaccaattgttatgcttggcagaatt 1190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56158167 cctgacatgcttactactgaaatgtgaaaacctagaccaattgttatgcttggcagaatt 56158108
Query: 1191 gctgtgatttgtgctttgcttatggtagtagcttttctctaatggagaatataatatatg 1250
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56158107 gctgtgatttgtgctttgcttatggtagtagcttttctctaatggagaatataatatatg 56158048
Query: 1251 gagtaggagagaagtaccttgatgttgttcatagcacgtgggataatgagcactcacaat 1310
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56158047 gagtaggagagaagtaccttgatgttgttcatagcacgtgggataatgagcactcacaat 56157988
Query: 1311 tgttcactgaaatgccatttttaaacagtgagaaagtaggatgagtacaaatctatatta 1370
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 56157987 tgttcactgaaatgccatttttaaacagtgagaaagtaggatgagtacaaatctatataa 56157928
Query: 1371 tgagataaactgagctgtggtatataaatcaggtaaagtcatcatgatcctatgtaatgt 1430
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 56157927 tgagataaactgagctgtgtaatataaatcaggtaaagtcatcatgatcctatgtaatgt 56157868
Query: 1431 atatcagagaaaaataatgtttgtgattcccaaatgatata 1471
||||||||||||| ||||||||||||||||| ||||||||
Sbjct: 56157867 atatcagagaaaataaatgtttgtgattcccagatgatata 56157827
Score = 394 bits (199), Expect = e-107
Identities = 199/199 (100%)
Strand = Plus / Minus
Query: 263 ggacctgagcactggcataaggacttccccatcgccaagggagatcgccagtcccctgtt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56172961 ggacctgagcactggcataaggacttccccatcgccaagggagatcgccagtcccctgtt 56172902
Query: 323 gacatcaacaccagcacagctgttcacgaccctgccctgaagcctctgtccctttgctat 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56172901 gacatcaacaccagcacagctgttcacgaccctgccctgaagcctctgtccctttgctat 56172842
Query: 383 gagcaagcgacttctcagagaattgtcaacaacggccactctttcaacgtggagtttgat 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56172841 gagcaagcgacttctcagagaattgtcaacaacggccactctttcaacgtggagtttgat 56172782
Query: 443 agctcccaggacaaaggcg 461
|||||||||||||||||||
Sbjct: 56172781 agctcccaggacaaaggcg 56172763
Score = 317 bits (160), Expect = 1e-83
Identities = 163/164 (99%)
Strand = Plus / Minus
Query: 101 gagcacgaagttggcgggagcctataaataccagcgacggcgcgacccgcggagatacgg 160
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 56174231 gagcacgaagttggcgggagcctataaataccagcgacggcgcgacccgcggacatacgg 56174172
Query: 161 tgcaggcgctccagcagccgccgctagaccggcgccaactcctgccctgcccctaccagc 220
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56174171 tgcaggcgctccagcagccgccgctagaccggcgccaactcctgccctgcccctaccagc 56174112
Query: 221 ggcacgaccatgtcccatcactggggatacgacaagcacaacgg 264
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56174111 ggcacgaccatgtcccatcactggggatacgacaagcacaacgg 56174068
Score = 272 bits (137), Expect = 5e-70
Identities = 151/158 (95%)
Strand = Plus / Minus
Query: 735 agggtaagagtgtggaattcactggctttgaccctcgtgacctcctccccggaagcttgg 794
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56160398 agggtaagagtgtggaattcactggctttgaccctcgtgacctcctccccggaagcttgg 56160339
Query: 795 actactggacctacccagggtccctgaccannnnnnntctcctggaaagtgtgacgtgga 854
|||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 56160338 actactggacctacccagggtccctgaccaccccccctctcctggaaagtgtgacgtgga 56160279
Query: 855 ttgtgctcagagaacccatctctgttagcagtgggcag 892
||||||||||||||||||||||||||||||||||||||
Sbjct: 56160278 ttgtgctcagagaacccatctctgttagcagtgggcag 56160241
Score = 238 bits (120), Expect = 7e-60
Identities = 120/120 (100%)
Strand = Plus / Minus
Query: 461 gtgctggaaggtggacctcttgctggcacttacagattgattcagtttcactttcactgg 520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56164891 gtgctggaaggtggacctcttgctggcacttacagattgattcagtttcactttcactgg 56164832
Query: 521 ggttcatctgatgggcaaggttctgagcatactgtggataaaaagaaatatgctgcagag 580
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56164831 ggttcatctgatgggcaaggttctgagcatactgtggataaaaagaaatatgctgcagag 56164772
Score = 167 bits (84), Expect = 2e-38
Identities = 84/84 (100%)
Strand = Plus / Minus
Query: 579 agctacacttggttcattggaacaccaaatacaaggactttggagaagctgcacaacagc 638
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56164299 agctacacttggttcattggaacaccaaatacaaggactttggagaagctgcacaacagc 56164240
Query: 639 ctgatggactggctgttttgggtg 662
||||||||||||||||||||||||
Sbjct: 56164239 ctgatggactggctgttttgggtg 56164216
Score = 131 bits (66), Expect = 1e-27
Identities = 66/66 (100%)
Strand = Plus / Minus
Query: 672 agattggcaatgctcagccaggcctccagaaaatcgttgatgttctggattccattaaaa 731
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56162594 agattggcaatgctcagccaggcctccagaaaatcgttgatgttctggattccattaaaa 56162535
Query: 732 caaagg 737
||||||
Sbjct: 56162534 caaagg 56162529
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 42,186,695
Number of extensions: 217
Number of successful extensions: 217
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 216
Number of HSP's successfully gapped: 7
Length of query: 1471
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1450
Effective length of database: 2,808,413,156
Effective search space: 4072199076200
Effective search space used: 4072199076200
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)