Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003102
(1052 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001039668.1| suppressor of G2 allele of SKP1 homolog [Bos... 503 e-142
Alignment gi|NP_001030569.1| stress-induced-phosphoprotein 1 [Bos taurus]. 52 7e-07
Alignment gi|NP_001033119.1| small glutamine-rich tetratricopeptide repea... 50 3e-06
Alignment gi|NP_001179720.1| small glutamine-rich tetratricopeptide repea... 50 4e-06
Alignment gi|XP_002696339.1| PREDICTED: small glutamine-rich tetratricope... 50 4e-06
Alignment gi|NP_001192905.1| dnaJ homolog subfamily C member 7 [Bos tauru... 49 6e-06
Alignment gi|NP_001192789.1| tetratricopeptide repeat protein 13 [Bos tau... 49 6e-06
Alignment gi|XP_002698832.1| PREDICTED: tetratricopeptide repeat domain 1... 49 6e-06
Alignment gi|XP_002698831.1| PREDICTED: tetratricopeptide repeat domain 1... 49 6e-06
Alignment gi|XP_002696071.1| PREDICTED: DnaJ (Hsp40) homolog, subfamily C... 49 6e-06
>ref|NP_001039668.1| suppressor of G2 allele of SKP1 homolog [Bos taurus].
Length = 338
Score = 503 bits (1294), Expect = e-142
Identities = 251/278 (90%), Positives = 260/278 (93%), Gaps = 4/278 (1%)
Frame = +2
Query: 182 RFFRSFSDALIEEDPQAALEELSKALEQKPDDAQYYCQRAYCHILLGNYHDAVADAKKSL 361
R FRSFSDALIE+DPQAALEEL+KALEQKPDDA YYCQRAYCHILLGNY DAVADAKKSL
Sbjct: 14 RLFRSFSDALIEQDPQAALEELTKALEQKPDDAPYYCQRAYCHILLGNYSDAVADAKKSL 73
Query: 362 ELNPNGSTAMLRKGICEYHEKNYAAALETFTEGQKLDSADTDFIVWIKRCEEAQNGSQSE 541
ELNPN STA+LRKGICEYHEKNYAAALETFTEGQKL+SAD D WIKRC+EAQNGSQ E
Sbjct: 74 ELNPNSSTALLRKGICEYHEKNYAAALETFTEGQKLNSADADLTAWIKRCQEAQNGSQPE 133
Query: 542 VSASQRTHQSKIKYDWYQTESQVIITLMIKNVQKNDVNVEFSEKELSALVKLPSGDDYNL 721
VSASQRTHQSKIKYDWYQTESQVIITLMIKNVQKNDVNVEFSEKELSALVKLPSGDDY+L
Sbjct: 134 VSASQRTHQSKIKYDWYQTESQVIITLMIKNVQKNDVNVEFSEKELSALVKLPSGDDYSL 193
Query: 722 KLRLLHPIIPEQSTFKVLSTKIEIKMKKPEAVRWEKLEGQGDVPNPKQFIADVKNLYPSS 901
KLRLLHPIIPEQSTFKVLSTKIEIKMKKPEAVRWEKLEGQGDVPNPK FIADVKNLYPSS
Sbjct: 194 KLRLLHPIIPEQSTFKVLSTKIEIKMKKPEAVRWEKLEGQGDVPNPKPFIADVKNLYPSS 253
Query: 902 SHYTRNWDKLVGEIKEEEKNEKVGGRCS----FKQIIS 1003
SHYTRNWDKLVGEIKEEEKNEK+ G + F+QI S
Sbjct: 254 SHYTRNWDKLVGEIKEEEKNEKLEGDAALNKLFQQIYS 291
Score = 63.5 bits (153), Expect = 3e-10
Identities = 30/36 (83%), Positives = 34/36 (94%)
Frame = +3
Query: 945 KKKKRMRKLEGDAALNKLFQQIYSDGSDEVKRAMNK 1052
K++++ KLEGDAALNKLFQQIYSDGSDEVKRAMNK
Sbjct: 268 KEEEKNEKLEGDAALNKLFQQIYSDGSDEVKRAMNK 303
>ref|NP_001030569.1| stress-induced-phosphoprotein 1 [Bos taurus].
Length = 543
Score = 52.4 bits (124), Expect = 7e-07
Identities = 32/117 (27%), Positives = 54/117 (46%)
Frame = +2
Query: 221 DPQAALEELSKALEQKPDDAQYYCQRAYCHILLGNYHDAVADAKKSLELNPNGSTAMLRK 400
D A++ ++A+++ P DA+ Y RA C+ L + A+ D ++ ++L P RK
Sbjct: 375 DYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRK 434
Query: 401 GICEYHEKNYAAALETFTEGQKLDSADTDFIVWIKRCEEAQNGSQSEVSASQRTHQS 571
K+Y A++ + + LDS C+EA +G Q V A H S
Sbjct: 435 AAALEAMKDYTKAMDVYQKALDLDS----------NCKEAADGYQRCVMAQYNRHDS 481
>ref|NP_001033119.1| small glutamine-rich tetratricopeptide repeat-containing protein
alpha [Bos taurus].
Length = 313
Score = 50.1 bits (118), Expect = 3e-06
Identities = 27/85 (31%), Positives = 47/85 (55%)
Frame = +2
Query: 218 EDPQAALEELSKALEQKPDDAQYYCQRAYCHILLGNYHDAVADAKKSLELNPNGSTAMLR 397
E+ +AA+ KA+E P +A Y+C RA + LGNY AV D ++++ ++P+ S A R
Sbjct: 105 ENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPSYSKAYGR 164
Query: 398 KGICEYHEKNYAAALETFTEGQKLD 472
G+ + A+ + + +LD
Sbjct: 165 MGLALSSLNKHTEAVAYYRKALELD 189
>ref|NP_001179720.1| small glutamine-rich tetratricopeptide repeat-containing protein
beta [Bos taurus].
Length = 304
Score = 49.7 bits (117), Expect = 4e-06
Identities = 28/101 (27%), Positives = 53/101 (52%)
Frame = +2
Query: 215 EEDPQAALEELSKALEQKPDDAQYYCQRAYCHILLGNYHDAVADAKKSLELNPNGSTAML 394
EE+ AA++ ++A+E ++A YYC RA LG+Y DA+ D +K++ ++ S A
Sbjct: 98 EENYAAAVDCYTQAIELDSNNAVYYCNRAAAQSKLGHYTDAIKDCEKAIAIDSKYSKAYG 157
Query: 395 RKGICEYHEKNYAAALETFTEGQKLDSADTDFIVWIKRCEE 517
R G+ + A+ ++ + LD + + +K E+
Sbjct: 158 RMGLALTAMNKFQEAVTSYQKALDLDPENDSYKSNLKIAEQ 198
>ref|XP_002696339.1| PREDICTED: small glutamine-rich tetratricopeptide repeat
(TPR)-containing, beta-like [Bos taurus].
Length = 304
Score = 49.7 bits (117), Expect = 4e-06
Identities = 28/101 (27%), Positives = 53/101 (52%)
Frame = +2
Query: 215 EEDPQAALEELSKALEQKPDDAQYYCQRAYCHILLGNYHDAVADAKKSLELNPNGSTAML 394
EE+ AA++ ++A+E ++A YYC RA LG+Y DA+ D +K++ ++ S A
Sbjct: 98 EENYAAAVDCYTQAIELDSNNAVYYCNRAAAQSKLGHYTDAIKDCEKAIAIDSKYSKAYG 157
Query: 395 RKGICEYHEKNYAAALETFTEGQKLDSADTDFIVWIKRCEE 517
R G+ + A+ ++ + LD + + +K E+
Sbjct: 158 RMGLALTAMNKFQEAVTSYQKALDLDPENDSYKSNLKIAEQ 198
>ref|NP_001192905.1| dnaJ homolog subfamily C member 7 [Bos taurus].
Length = 494
Score = 49.3 bits (116), Expect = 6e-06
Identities = 27/86 (31%), Positives = 45/86 (52%)
Frame = +2
Query: 215 EEDPQAALEELSKALEQKPDDAQYYCQRAYCHILLGNYHDAVADAKKSLELNPNGSTAML 394
++D A +KA++ P +A YY RA ++LG + +A+ DA++S+ L+ L
Sbjct: 41 KKDYNEAYNYYTKAIDMCPKNASYYGNRAATLMMLGKFREALGDAQQSVRLDDTFVRGHL 100
Query: 395 RKGICEYHEKNYAAALETFTEGQKLD 472
R+G C N AA +F +LD
Sbjct: 101 REGKCHLSLGNAMAACRSFQRALELD 126
>ref|NP_001192789.1| tetratricopeptide repeat protein 13 [Bos taurus].
Length = 858
Score = 49.3 bits (116), Expect = 6e-06
Identities = 31/85 (36%), Positives = 48/85 (56%), Gaps = 2/85 (2%)
Frame = +2
Query: 233 ALEELSKALEQKPDDAQYYCQRAYCHILLGNYHDAVADAKKSLELNPNGSTAMLRKGICE 412
A+ +L+KA++ +P A+ Y R + + +Y A D ++SLELN N AML KG+
Sbjct: 233 AVNDLTKAIQLQPS-ARLYRHRGTLYFISEDYATAHEDFQQSLELNKNQPIAMLYKGLTF 291
Query: 413 YHEKNYAAALETFTEG--QKLDSAD 481
+H A+E+F E QK+D D
Sbjct: 292 FHRGLLKEAIESFKEALKQKVDFID 316
>ref|XP_002698832.1| PREDICTED: tetratricopeptide repeat domain 13 isoform 2 [Bos
taurus].
Length = 805
Score = 49.3 bits (116), Expect = 6e-06
Identities = 31/85 (36%), Positives = 48/85 (56%), Gaps = 2/85 (2%)
Frame = +2
Query: 233 ALEELSKALEQKPDDAQYYCQRAYCHILLGNYHDAVADAKKSLELNPNGSTAMLRKGICE 412
A+ +L+KA++ +P A+ Y R + + +Y A D ++SLELN N AML KG+
Sbjct: 180 AVNDLTKAIQLQPS-ARLYRHRGTLYFISEDYATAHEDFQQSLELNKNQPIAMLYKGLTF 238
Query: 413 YHEKNYAAALETFTEG--QKLDSAD 481
+H A+E+F E QK+D D
Sbjct: 239 FHRGLLKEAIESFKEALKQKVDFID 263
>ref|XP_002698831.1| PREDICTED: tetratricopeptide repeat domain 13 isoform 1 [Bos
taurus].
Length = 858
Score = 49.3 bits (116), Expect = 6e-06
Identities = 31/85 (36%), Positives = 48/85 (56%), Gaps = 2/85 (2%)
Frame = +2
Query: 233 ALEELSKALEQKPDDAQYYCQRAYCHILLGNYHDAVADAKKSLELNPNGSTAMLRKGICE 412
A+ +L+KA++ +P A+ Y R + + +Y A D ++SLELN N AML KG+
Sbjct: 233 AVNDLTKAIQLQPS-ARLYRHRGTLYFISEDYATAHEDFQQSLELNKNQPIAMLYKGLTF 291
Query: 413 YHEKNYAAALETFTEG--QKLDSAD 481
+H A+E+F E QK+D D
Sbjct: 292 FHRGLLKEAIESFKEALKQKVDFID 316
>ref|XP_002696071.1| PREDICTED: DnaJ (Hsp40) homolog, subfamily C, member 7 [Bos
taurus].
Length = 403
Score = 49.3 bits (116), Expect = 6e-06
Identities = 27/86 (31%), Positives = 45/86 (52%)
Frame = +2
Query: 215 EEDPQAALEELSKALEQKPDDAQYYCQRAYCHILLGNYHDAVADAKKSLELNPNGSTAML 394
++D A +KA++ P +A YY RA ++LG + +A+ DA++S+ L+ L
Sbjct: 41 KKDYNEAYNYYTKAIDMCPKNASYYGNRAATLMMLGKFREALGDAQQSVRLDDTFVRGHL 100
Query: 395 RKGICEYHEKNYAAALETFTEGQKLD 472
R+G C N AA +F +LD
Sbjct: 101 REGKCHLSLGNAMAACRSFQRALELD 126
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 32,873,537
Number of extensions: 730186
Number of successful extensions: 3548
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 3521
Number of HSP's successfully gapped: 14
Length of query: 350
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 247
Effective length of database: 14,273,310
Effective search space: 3525507570
Effective search space used: 3525507570
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003102
(1052 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_851986.1| PREDICTED: similar to suppressor of G2 allele o... 497 e-141
Alignment gi|XP_535139.2| PREDICTED: similar to suppressor of G2 allele o... 268 2e-83
Alignment gi|XP_535258.1| PREDICTED: similar to small glutamine-rich tetr... 52 7e-07
Alignment gi|XP_853176.1| PREDICTED: similar to Tetratricopeptide repeat ... 51 2e-06
Alignment gi|XP_854960.1| PREDICTED: similar to Stress-induced-phosphopro... 50 3e-06
Alignment gi|XP_542185.2| PREDICTED: similar to small glutamine-rich tetr... 50 4e-06
Alignment gi|XP_537639.2| PREDICTED: similar to DnaJ (Hsp40) homolog, sub... 50 5e-06
Alignment gi|XP_860857.1| PREDICTED: similar to DnaJ (Hsp40) homolog, sub... 50 5e-06
Alignment gi|XP_860799.1| PREDICTED: similar to DnaJ (Hsp40) homolog, sub... 50 5e-06
Alignment gi|XP_860765.1| PREDICTED: similar to DnaJ (Hsp40) homolog, sub... 50 5e-06
>ref|XP_851986.1| PREDICTED: similar to suppressor of G2 allele of SKP1 [Canis
familiaris].
Length = 493
Score = 497 bits (1280), Expect = e-141
Identities = 251/292 (85%), Positives = 263/292 (90%), Gaps = 4/292 (1%)
Frame = +2
Query: 140 VGMXXXXXXXXXXQRFFRSFSDALIEEDPQAALEELSKALEQKPDDAQYYCQRAYCHILL 319
+GM +F RSFSDAL+EEDP+AALEEL+KALEQKPDDAQYYCQRAYCHILL
Sbjct: 155 LGMAAAAAGPATASKFSRSFSDALMEEDPRAALEELTKALEQKPDDAQYYCQRAYCHILL 214
Query: 320 GNYHDAVADAKKSLELNPNGSTAMLRKGICEYHEKNYAAALETFTEGQKLDSADTDFIVW 499
GNY DAVADAKKSLELNPN S AMLRKGICEYHEKNYAAALETF EGQKLDSAD DF VW
Sbjct: 215 GNYCDAVADAKKSLELNPNNSIAMLRKGICEYHEKNYAAALETFIEGQKLDSADPDFTVW 274
Query: 500 IKRCEEAQNGSQSEVSASQRTHQSKIKYDWYQTESQVIITLMIKNVQKNDVNVEFSEKEL 679
IK+C+EAQNGSQSEVS SQRTHQSKIKYDWYQTESQVIITLMIKNVQKN+VNVEFSEKEL
Sbjct: 275 IKKCQEAQNGSQSEVSDSQRTHQSKIKYDWYQTESQVIITLMIKNVQKNNVNVEFSEKEL 334
Query: 680 SALVKLPSGDDYNLKLRLLHPIIPEQSTFKVLSTKIEIKMKKPEAVRWEKLEGQGDVPNP 859
SALVKLPSG+DYNLKLRLLHPIIPEQSTFKVLSTKIEIKMKK EAVRWEKLEGQGDVP P
Sbjct: 335 SALVKLPSGEDYNLKLRLLHPIIPEQSTFKVLSTKIEIKMKKTEAVRWEKLEGQGDVPKP 394
Query: 860 KQFIADVKNLYPSSSHYTRNWDKLVGEIKEEEKNEKVGGRCS----FKQIIS 1003
KQFIADVKNLYPSSSHYTRNWDKLVGEIKEEEKNEK+ G + F+QI S
Sbjct: 395 KQFIADVKNLYPSSSHYTRNWDKLVGEIKEEEKNEKLEGDAALNKLFQQIYS 446
Score = 63.5 bits (153), Expect = 3e-10
Identities = 30/36 (83%), Positives = 34/36 (94%)
Frame = +3
Query: 945 KKKKRMRKLEGDAALNKLFQQIYSDGSDEVKRAMNK 1052
K++++ KLEGDAALNKLFQQIYSDGSDEVKRAMNK
Sbjct: 423 KEEEKNEKLEGDAALNKLFQQIYSDGSDEVKRAMNK 458
>ref|XP_535139.2| PREDICTED: similar to suppressor of G2 allele of SKP1 [Canis
familiaris].
Length = 223
Score = 268 bits (686), Expect(2) = 2e-83
Identities = 132/137 (96%), Positives = 135/137 (98%)
Frame = +2
Query: 560 THQSKIKYDWYQTESQVIITLMIKNVQKNDVNVEFSEKELSALVKLPSGDDYNLKLRLLH 739
THQSKIKYDWYQTESQVIITLMIKNVQKN+VNVEFSEKELSALVKLPSG+DYNLKLRLLH
Sbjct: 25 THQSKIKYDWYQTESQVIITLMIKNVQKNNVNVEFSEKELSALVKLPSGEDYNLKLRLLH 84
Query: 740 PIIPEQSTFKVLSTKIEIKMKKPEAVRWEKLEGQGDVPNPKQFIADVKNLYPSSSHYTRN 919
PIIPEQSTFKVLSTKIEIKMKK EAVRWEKLEGQGDVP PKQFIADVKNLYPSSSHYTRN
Sbjct: 85 PIIPEQSTFKVLSTKIEIKMKKTEAVRWEKLEGQGDVPKPKQFIADVKNLYPSSSHYTRN 144
Query: 920 WDKLVGEIKEEEKNEKV 970
WDKLVGEIKEEEKNEK+
Sbjct: 145 WDKLVGEIKEEEKNEKL 161
Score = 60.1 bits (144), Expect(2) = 2e-83
Identities = 29/36 (80%), Positives = 33/36 (91%)
Frame = +3
Query: 945 KKKKRMRKLEGDAALNKLFQQIYSDGSDEVKRAMNK 1052
K++++ KLE DAALNKLFQQIYSDGSDEVKRAMNK
Sbjct: 153 KEEEKNEKLEVDAALNKLFQQIYSDGSDEVKRAMNK 188
>ref|XP_535258.1| PREDICTED: similar to small glutamine-rich tetratricopeptide repeat
(TPR)-containing, beta [Canis familiaris].
Length = 304
Score = 52.4 bits (124), Expect = 7e-07
Identities = 29/101 (28%), Positives = 54/101 (53%)
Frame = +2
Query: 215 EEDPQAALEELSKALEQKPDDAQYYCQRAYCHILLGNYHDAVADAKKSLELNPNGSTAML 394
EE+ AA++ ++A+E P++A YYC RA LG+Y DA+ D +K++ ++ S A
Sbjct: 98 EENYAAAVDCYTQAIELDPNNAVYYCNRAAAQSKLGHYTDAIKDCEKAIAIDSKYSKAYG 157
Query: 395 RKGICEYHEKNYAAALETFTEGQKLDSADTDFIVWIKRCEE 517
R G+ + A+ ++ + LD + + +K E+
Sbjct: 158 RMGLALTAINKFEEAVTSYQKALDLDPENDSYKSNLKIAEQ 198
>ref|XP_853176.1| PREDICTED: similar to Tetratricopeptide repeat protein 4 (TPR
repeat protein 4) [Canis familiaris].
Length = 358
Score = 50.8 bits (120), Expect = 2e-06
Identities = 33/143 (23%), Positives = 69/143 (48%), Gaps = 4/143 (2%)
Frame = +2
Query: 200 SDALIEEDPQAALEELSKALEQKPDD----AQYYCQRAYCHILLGNYHDAVADAKKSLEL 367
+D E++ + A+ ++ L++K D A Y RA LGN+ A+ D K + +L
Sbjct: 57 NDYFKEKEYKKAVISYTEGLKKKCSDPDMNAVLYTNRAAAQYYLGNFRSALNDVKAARKL 116
Query: 368 NPNGSTAMLRKGICEYHEKNYAAALETFTEGQKLDSADTDFIVWIKRCEEAQNGSQSEVS 547
P A++R +C KN+A A+ EG ++D+ + + + ++ + Q ++
Sbjct: 117 KPCHLKAIVRGALCHLELKNFAEAVNWCDEGLQIDAREKKLLEMRAKADKLKRTEQRDI- 175
Query: 548 ASQRTHQSKIKYDWYQTESQVII 616
++K+K Q E++ ++
Sbjct: 176 -----RKAKLKEKKEQNENEALL 193
>ref|XP_854960.1| PREDICTED: similar to Stress-induced-phosphoprotein 1 (STI1)
(Hsc70/Hsp90-organizing protein) (Hop)
(Transformation-sensitive protein IEF SSP 3521) [Canis
familiaris].
Length = 543
Score = 50.4 bits (119), Expect = 3e-06
Identities = 31/117 (26%), Positives = 54/117 (46%)
Frame = +2
Query: 221 DPQAALEELSKALEQKPDDAQYYCQRAYCHILLGNYHDAVADAKKSLELNPNGSTAMLRK 400
D A++ ++A+++ P DA+ Y RA C+ L + A+ D ++ ++L P RK
Sbjct: 375 DYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPAFIKGYTRK 434
Query: 401 GICEYHEKNYAAALETFTEGQKLDSADTDFIVWIKRCEEAQNGSQSEVSASQRTHQS 571
K+Y A++ + + LDS C+EA +G Q + A H S
Sbjct: 435 AAALEAMKDYTKAMDVYQKALDLDS----------NCKEAADGYQRCMMAQYNRHDS 481
>ref|XP_542185.2| PREDICTED: similar to small glutamine-rich tetratricopeptide [Canis
familiaris].
Length = 313
Score = 50.1 bits (118), Expect = 4e-06
Identities = 27/85 (31%), Positives = 47/85 (55%)
Frame = +2
Query: 218 EDPQAALEELSKALEQKPDDAQYYCQRAYCHILLGNYHDAVADAKKSLELNPNGSTAMLR 397
E+ +AA+ KA+E P +A Y+C RA + LGNY AV D ++++ ++P+ S A R
Sbjct: 105 ENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYTGAVQDCERAICIDPSYSKAYGR 164
Query: 398 KGICEYHEKNYAAALETFTEGQKLD 472
G+ + A+ + + +LD
Sbjct: 165 MGLALSSLNKHTEAVAYYKKALELD 189
>ref|XP_537639.2| PREDICTED: similar to DnaJ (Hsp40) homolog, subfamily C, member 7
isoform 2 [Canis familiaris].
Length = 494
Score = 49.7 bits (117), Expect = 5e-06
Identities = 27/86 (31%), Positives = 46/86 (53%)
Frame = +2
Query: 215 EEDPQAALEELSKALEQKPDDAQYYCQRAYCHILLGNYHDAVADAKKSLELNPNGSTAML 394
++D A +KA++ P +A YY RA ++LG + +A+ DA++S+ L+ + L
Sbjct: 41 KKDYNEAYNYYTKAIDMCPKNASYYGNRAATLMMLGKFREALGDAQQSVRLDDSFVRGHL 100
Query: 395 RKGICEYHEKNYAAALETFTEGQKLD 472
R+G C N AA +F +LD
Sbjct: 101 REGKCHLSLGNAMAACRSFQRALELD 126
>ref|XP_860857.1| PREDICTED: similar to DnaJ (Hsp40) homolog, subfamily C, member 7
isoform 11 [Canis familiaris].
Length = 485
Score = 49.7 bits (117), Expect = 5e-06
Identities = 27/86 (31%), Positives = 46/86 (53%)
Frame = +2
Query: 215 EEDPQAALEELSKALEQKPDDAQYYCQRAYCHILLGNYHDAVADAKKSLELNPNGSTAML 394
++D A +KA++ P +A YY RA ++LG + +A+ DA++S+ L+ + L
Sbjct: 41 KKDYNEAYNYYTKAIDMCPKNASYYGNRAATLMMLGKFREALGDAQQSVRLDDSFVRGHL 100
Query: 395 RKGICEYHEKNYAAALETFTEGQKLD 472
R+G C N AA +F +LD
Sbjct: 101 REGKCHLSLGNAMAACRSFQRALELD 126
>ref|XP_860799.1| PREDICTED: similar to DnaJ (Hsp40) homolog, subfamily C, member 7
isoform 9 [Canis familiaris].
Length = 347
Score = 49.7 bits (117), Expect = 5e-06
Identities = 27/86 (31%), Positives = 46/86 (53%)
Frame = +2
Query: 215 EEDPQAALEELSKALEQKPDDAQYYCQRAYCHILLGNYHDAVADAKKSLELNPNGSTAML 394
++D A +KA++ P +A YY RA ++LG + +A+ DA++S+ L+ + L
Sbjct: 41 KKDYNEAYNYYTKAIDMCPKNASYYGNRAATLMMLGKFREALGDAQQSVRLDDSFVRGHL 100
Query: 395 RKGICEYHEKNYAAALETFTEGQKLD 472
R+G C N AA +F +LD
Sbjct: 101 REGKCHLSLGNAMAACRSFQRALELD 126
>ref|XP_860765.1| PREDICTED: similar to DnaJ (Hsp40) homolog, subfamily C, member 7
isoform 8 [Canis familiaris].
Length = 383
Score = 49.7 bits (117), Expect = 5e-06
Identities = 27/86 (31%), Positives = 46/86 (53%)
Frame = +2
Query: 215 EEDPQAALEELSKALEQKPDDAQYYCQRAYCHILLGNYHDAVADAKKSLELNPNGSTAML 394
++D A +KA++ P +A YY RA ++LG + +A+ DA++S+ L+ + L
Sbjct: 41 KKDYNEAYNYYTKAIDMCPKNASYYGNRAATLMMLGKFREALGDAQQSVRLDDSFVRGHL 100
Query: 395 RKGICEYHEKNYAAALETFTEGQKLD 472
R+G C N AA +F +LD
Sbjct: 101 REGKCHLSLGNAMAACRSFQRALELD 126
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 34,480,022
Number of extensions: 756362
Number of successful extensions: 3829
Number of sequences better than 1.0e-05: 15
Number of HSP's gapped: 3803
Number of HSP's successfully gapped: 18
Length of query: 350
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 246
Effective length of database: 15,407,560
Effective search space: 3790259760
Effective search space used: 3790259760
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003102
(1052 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_006695.1| suppressor of G2 allele of SKP1 homolog isoform... 486 e-137
Alignment gi|NP_001124384.1| suppressor of G2 allele of SKP1 homolog isof... 468 e-132
Alignment gi|NP_061945.1| small glutamine-rich tetratricopeptide repeat-c... 52 7e-07
Alignment gi|NP_006810.1| stress-induced-phosphoprotein 1 [Homo sapiens]. 52 1e-06
Alignment gi|NP_003306.3| dnaJ homolog subfamily C member 7 isoform 1 [Ho... 50 5e-06
Alignment gi|NP_001116307.2| tetratricopeptide repeat protein 13 isoform ... 49 6e-06
Alignment gi|NP_078801.3| tetratricopeptide repeat protein 13 isoform a [... 49 6e-06
Alignment gi|NP_055227.1| calcyclin-binding protein isoform 1 [Homo sapie... 41 7e-06
Alignment gi|NP_001007215.1| calcyclin-binding protein isoform 2 [Homo sa... 41 7e-06
Alignment gi|NP_003012.1| small glutamine-rich tetratricopeptide repeat-c... 49 8e-06
>ref|NP_006695.1| suppressor of G2 allele of SKP1 homolog isoform SGT1A [Homo sapiens].
Length = 333
Score = 486 bits (1251), Expect = e-137
Identities = 245/279 (87%), Positives = 258/279 (92%), Gaps = 4/279 (1%)
Frame = +2
Query: 179 QRFFRSFSDALIEEDPQAALEELSKALEQKPDDAQYYCQRAYCHILLGNYHDAVADAKKS 358
QRFF+SFSDALI+EDPQAALEEL+KALEQKPDDAQYYCQRAYCHILLGNY AVADAKKS
Sbjct: 12 QRFFQSFSDALIDEDPQAALEELTKALEQKPDDAQYYCQRAYCHILLGNYCVAVADAKKS 71
Query: 359 LELNPNGSTAMLRKGICEYHEKNYAAALETFTEGQKLDSADTDFIVWIKRCEEAQNGSQS 538
LELNPN STAMLRKGICEYHEKNYAAALETFTEGQKLDSAD +F VWIKRC+EAQNGS+S
Sbjct: 72 LELNPNNSTAMLRKGICEYHEKNYAAALETFTEGQKLDSADANFSVWIKRCQEAQNGSES 131
Query: 539 EVSASQRTHQSKIKYDWYQTESQVIITLMIKNVQKNDVNVEFSEKELSALVKLPSGDDYN 718
EV THQSKIKYDWYQTESQV+ITLMIKNVQKNDVNVEFSEKELSALVKLPSG+DYN
Sbjct: 132 EVW----THQSKIKYDWYQTESQVVITLMIKNVQKNDVNVEFSEKELSALVKLPSGEDYN 187
Query: 719 LKLRLLHPIIPEQSTFKVLSTKIEIKMKKPEAVRWEKLEGQGDVPNPKQFIADVKNLYPS 898
LKL LLHPIIPEQSTFKVLSTKIEIK+KKPEAVRWEKLEGQGDVP PKQF+ADVKNLYPS
Sbjct: 188 LKLELLHPIIPEQSTFKVLSTKIEIKLKKPEAVRWEKLEGQGDVPTPKQFVADVKNLYPS 247
Query: 899 SSHYTRNWDKLVGEIKEEEKNEKVGGRCS----FKQIIS 1003
SS YTRNWDKLVGEIKEEEKNEK+ G + F+QI S
Sbjct: 248 SSPYTRNWDKLVGEIKEEEKNEKLEGDAALNRLFQQIYS 286
Score = 62.4 bits (150), Expect = 7e-10
Identities = 29/36 (80%), Positives = 34/36 (94%)
Frame = +3
Query: 945 KKKKRMRKLEGDAALNKLFQQIYSDGSDEVKRAMNK 1052
K++++ KLEGDAALN+LFQQIYSDGSDEVKRAMNK
Sbjct: 263 KEEEKNEKLEGDAALNRLFQQIYSDGSDEVKRAMNK 298
>ref|NP_001124384.1| suppressor of G2 allele of SKP1 homolog isoform SGT1B [Homo sapiens].
Length = 365
Score = 468 bits (1204), Expect = e-132
Identities = 244/311 (78%), Positives = 257/311 (82%), Gaps = 36/311 (11%)
Frame = +2
Query: 179 QRFFRSFSDALIEEDPQAALEELSKALEQKPDDAQYYCQRAYCHILLGNYHDAVADAKKS 358
QRFF+SFSDALI+EDPQAALEEL+KALEQKPDDAQYYCQRAYCHILLGNY AVADAKKS
Sbjct: 12 QRFFQSFSDALIDEDPQAALEELTKALEQKPDDAQYYCQRAYCHILLGNYCVAVADAKKS 71
Query: 359 LELNPNGSTAMLRKGICEYHEKNYAAALETFTEGQKLD---------------------- 472
LELNPN STAMLRKGICEYHEKNYAAALETFTEGQKLD
Sbjct: 72 LELNPNNSTAMLRKGICEYHEKNYAAALETFTEGQKLDIETGFHRVGQAGLQLLTSSDPP 131
Query: 473 ----------SADTDFIVWIKRCEEAQNGSQSEVSASQRTHQSKIKYDWYQTESQVIITL 622
AD +F VWIKRC+EAQNGS+SEV THQSKIKYDWYQTESQV+ITL
Sbjct: 132 ALDSQSAGITGADANFSVWIKRCQEAQNGSESEVW----THQSKIKYDWYQTESQVVITL 187
Query: 623 MIKNVQKNDVNVEFSEKELSALVKLPSGDDYNLKLRLLHPIIPEQSTFKVLSTKIEIKMK 802
MIKNVQKNDVNVEFSEKELSALVKLPSG+DYNLKL LLHPIIPEQSTFKVLSTKIEIK+K
Sbjct: 188 MIKNVQKNDVNVEFSEKELSALVKLPSGEDYNLKLELLHPIIPEQSTFKVLSTKIEIKLK 247
Query: 803 KPEAVRWEKLEGQGDVPNPKQFIADVKNLYPSSSHYTRNWDKLVGEIKEEEKNEKVGGRC 982
KPEAVRWEKLEGQGDVP PKQF+ADVKNLYPSSS YTRNWDKLVGEIKEEEKNEK+ G
Sbjct: 248 KPEAVRWEKLEGQGDVPTPKQFVADVKNLYPSSSPYTRNWDKLVGEIKEEEKNEKLEGDA 307
Query: 983 S----FKQIIS 1003
+ F+QI S
Sbjct: 308 ALNRLFQQIYS 318
Score = 62.4 bits (150), Expect = 7e-10
Identities = 29/36 (80%), Positives = 34/36 (94%)
Frame = +3
Query: 945 KKKKRMRKLEGDAALNKLFQQIYSDGSDEVKRAMNK 1052
K++++ KLEGDAALN+LFQQIYSDGSDEVKRAMNK
Sbjct: 295 KEEEKNEKLEGDAALNRLFQQIYSDGSDEVKRAMNK 330
>ref|NP_061945.1| small glutamine-rich tetratricopeptide repeat-containing protein
beta [Homo sapiens].
Length = 304
Score = 52.4 bits (124), Expect = 7e-07
Identities = 29/101 (28%), Positives = 54/101 (53%)
Frame = +2
Query: 215 EEDPQAALEELSKALEQKPDDAQYYCQRAYCHILLGNYHDAVADAKKSLELNPNGSTAML 394
EE+ AA++ ++A+E P++A YYC RA LG+Y DA+ D +K++ ++ S A
Sbjct: 98 EENYAAAVDCYTQAIELDPNNAVYYCNRAAAQSKLGHYTDAIKDCEKAIAIDSKYSKAYG 157
Query: 395 RKGICEYHEKNYAAALETFTEGQKLDSADTDFIVWIKRCEE 517
R G+ + A+ ++ + LD + + +K E+
Sbjct: 158 RMGLALTALNKFEEAVTSYQKALDLDPENDSYKSNLKIAEQ 198
>ref|NP_006810.1| stress-induced-phosphoprotein 1 [Homo sapiens].
Length = 543
Score = 51.6 bits (122), Expect = 1e-06
Identities = 31/117 (26%), Positives = 55/117 (47%)
Frame = +2
Query: 221 DPQAALEELSKALEQKPDDAQYYCQRAYCHILLGNYHDAVADAKKSLELNPNGSTAMLRK 400
D A++ ++A+++ P DA+ Y RA C+ L + A+ D ++ ++L P RK
Sbjct: 375 DYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRK 434
Query: 401 GICEYHEKNYAAALETFTEGQKLDSADTDFIVWIKRCEEAQNGSQSEVSASQRTHQS 571
K+Y A++ + + LDS+ C+EA +G Q + A H S
Sbjct: 435 AAALEAMKDYTKAMDVYQKALDLDSS----------CKEAADGYQRCMMAQYNRHDS 481
>ref|NP_003306.3| dnaJ homolog subfamily C member 7 isoform 1 [Homo sapiens].
Length = 494
Score = 49.7 bits (117), Expect = 5e-06
Identities = 27/86 (31%), Positives = 46/86 (53%)
Frame = +2
Query: 215 EEDPQAALEELSKALEQKPDDAQYYCQRAYCHILLGNYHDAVADAKKSLELNPNGSTAML 394
++D A +KA++ P +A YY RA ++LG + +A+ DA++S+ L+ + L
Sbjct: 41 KKDYNEAYNYYTKAIDMCPKNASYYGNRAATLMMLGRFREALGDAQQSVRLDDSFVRGHL 100
Query: 395 RKGICEYHEKNYAAALETFTEGQKLD 472
R+G C N AA +F +LD
Sbjct: 101 REGKCHLSLGNAMAACRSFQRALELD 126
>ref|NP_001116307.2| tetratricopeptide repeat protein 13 isoform b [Homo sapiens].
Length = 806
Score = 49.3 bits (116), Expect = 6e-06
Identities = 31/85 (36%), Positives = 48/85 (56%), Gaps = 2/85 (2%)
Frame = +2
Query: 233 ALEELSKALEQKPDDAQYYCQRAYCHILLGNYHDAVADAKKSLELNPNGSTAMLRKGICE 412
A+ +L+KA++ +P A+ Y R + + +Y A D ++SLELN N AML KG+
Sbjct: 182 AVNDLTKAIQLQPS-ARLYRHRGTLYFISEDYATAHEDFQQSLELNKNQPIAMLYKGLTF 240
Query: 413 YHEKNYAAALETFTEG--QKLDSAD 481
+H A+E+F E QK+D D
Sbjct: 241 FHRGLLKEAIESFKEALKQKVDFID 265
>ref|NP_078801.3| tetratricopeptide repeat protein 13 isoform a [Homo sapiens].
Length = 860
Score = 49.3 bits (116), Expect = 6e-06
Identities = 31/85 (36%), Positives = 48/85 (56%), Gaps = 2/85 (2%)
Frame = +2
Query: 233 ALEELSKALEQKPDDAQYYCQRAYCHILLGNYHDAVADAKKSLELNPNGSTAMLRKGICE 412
A+ +L+KA++ +P A+ Y R + + +Y A D ++SLELN N AML KG+
Sbjct: 235 AVNDLTKAIQLQPS-ARLYRHRGTLYFISEDYATAHEDFQQSLELNKNQPIAMLYKGLTF 293
Query: 413 YHEKNYAAALETFTEG--QKLDSAD 481
+H A+E+F E QK+D D
Sbjct: 294 FHRGLLKEAIESFKEALKQKVDFID 318
>ref|NP_055227.1| calcyclin-binding protein isoform 1 [Homo sapiens].
Length = 228
Score = 40.8 bits (94), Expect(2) = 7e-06
Identities = 39/117 (33%), Positives = 58/117 (49%), Gaps = 7/117 (5%)
Frame = +2
Query: 503 KRCEEAQNGSQSEVSASQRT-HQSKIK-YDWYQTES--QVIITLM-IKNVQKNDVNVEFS 667
K+ E N + V A T + KI Y W Q++ ++ ITL + V +V V F+
Sbjct: 50 KKAELLDNEKPAAVVAPITTGYTVKISNYGWDQSDKFVKIYITLTGVHQVPTENVQVHFT 109
Query: 668 EKELSALVKLPSGDDYNLKL-RLLHPIIPEQSTFKV-LSTKIEIKMKKPEAVRWEKL 832
E+ LVK +G Y++ + LL PI E S+ KV T + + KK E RW+ L
Sbjct: 110 ERSFDLLVKNLNGKSYSMIVNNLLKPISVEGSSKKVKTDTVLILCRKKVENTRWDYL 166
Score = 27.7 bits (60), Expect(2) = 7e-06
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Frame = +3
Query: 945 KKKKRMRKLEGDAA--LNKLFQQIYSDGSDEVKRAMNK 1052
+K+K E D + L + ++IY DG D++KR +NK
Sbjct: 175 EKEKPSYDTETDPSEGLMNVLKKIYEDGDDDMKRTINK 212
>ref|NP_001007215.1| calcyclin-binding protein isoform 2 [Homo sapiens].
Length = 185
Score = 40.8 bits (94), Expect(2) = 7e-06
Identities = 39/117 (33%), Positives = 58/117 (49%), Gaps = 7/117 (5%)
Frame = +2
Query: 503 KRCEEAQNGSQSEVSASQRT-HQSKIK-YDWYQTES--QVIITLM-IKNVQKNDVNVEFS 667
K+ E N + V A T + KI Y W Q++ ++ ITL + V +V V F+
Sbjct: 7 KKAELLDNEKPAAVVAPITTGYTVKISNYGWDQSDKFVKIYITLTGVHQVPTENVQVHFT 66
Query: 668 EKELSALVKLPSGDDYNLKL-RLLHPIIPEQSTFKV-LSTKIEIKMKKPEAVRWEKL 832
E+ LVK +G Y++ + LL PI E S+ KV T + + KK E RW+ L
Sbjct: 67 ERSFDLLVKNLNGKSYSMIVNNLLKPISVEGSSKKVKTDTVLILCRKKVENTRWDYL 123
Score = 27.7 bits (60), Expect(2) = 7e-06
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Frame = +3
Query: 945 KKKKRMRKLEGDAA--LNKLFQQIYSDGSDEVKRAMNK 1052
+K+K E D + L + ++IY DG D++KR +NK
Sbjct: 132 EKEKPSYDTETDPSEGLMNVLKKIYEDGDDDMKRTINK 169
>ref|NP_003012.1| small glutamine-rich tetratricopeptide repeat-containing protein
alpha [Homo sapiens].
Length = 313
Score = 48.9 bits (115), Expect = 8e-06
Identities = 27/85 (31%), Positives = 46/85 (54%)
Frame = +2
Query: 218 EDPQAALEELSKALEQKPDDAQYYCQRAYCHILLGNYHDAVADAKKSLELNPNGSTAMLR 397
E+ +AA+ KA+E P +A Y+C RA + LGNY AV D ++++ ++P S A R
Sbjct: 105 ENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGR 164
Query: 398 KGICEYHEKNYAAALETFTEGQKLD 472
G+ + A+ + + +LD
Sbjct: 165 MGLALSSLNKHVEAVAYYKKALELD 189
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 33,959,897
Number of extensions: 755913
Number of successful extensions: 3966
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 3926
Number of HSP's successfully gapped: 14
Length of query: 350
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 247
Effective length of database: 14,901,872
Effective search space: 3680762384
Effective search space used: 3680762384
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003102
(1052 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_080750.1| suppressor of G2 allele of SKP1 homolog [Mus mu... 463 e-130
Alignment gi|NP_033916.1| calcyclin-binding protein [Mus musculus]. 43 1e-06
Alignment gi|NP_078775.1| small glutamine-rich tetratricopeptide repeat-c... 52 1e-06
Alignment gi|NP_058017.1| stress-induced-phosphoprotein 1 [Mus musculus]. 51 1e-06
Alignment gi|NP_062769.2| dnaJ homolog subfamily C member 7 [Mus musculus]. 50 2e-06
Alignment gi|NP_659087.1| small glutamine-rich tetratricopeptide repeat-c... 50 2e-06
>ref|NP_080750.1| suppressor of G2 allele of SKP1 homolog [Mus musculus].
Length = 336
Score = 463 bits (1191), Expect = e-130
Identities = 230/279 (82%), Positives = 250/279 (89%), Gaps = 4/279 (1%)
Frame = +2
Query: 179 QRFFRSFSDALIEEDPQAALEELSKALEQKPDDAQYYCQRAYCHILLGNYHDAVADAKKS 358
QR F+SFSDALI+ DPQAALEEL+KALEQ PDDAQYYCQRAYCHILLG Y D +AD KKS
Sbjct: 12 QRLFQSFSDALIDGDPQAALEELTKALEQNPDDAQYYCQRAYCHILLGKYRDGIADVKKS 71
Query: 359 LELNPNGSTAMLRKGICEYHEKNYAAALETFTEGQKLDSADTDFIVWIKRCEEAQNGSQS 538
LELNPN TA+LRKGICEYHEK+YA+ALETF EGQKLDS DT+F WIKRC+E QNGS+S
Sbjct: 72 LELNPNNCTALLRKGICEYHEKDYASALETFAEGQKLDSTDTNFDTWIKRCQEIQNGSES 131
Query: 539 EVSASQRTHQSKIKYDWYQTESQVIITLMIKNVQKNDVNVEFSEKELSALVKLPSGDDYN 718
EVSASQRT QSKIKYDWYQTES VIITLMIK+VQKNDV V FSE+ELSALVK+P+G+DY+
Sbjct: 132 EVSASQRT-QSKIKYDWYQTESHVIITLMIKSVQKNDVRVGFSERELSALVKIPAGEDYS 190
Query: 719 LKLRLLHPIIPEQSTFKVLSTKIEIKMKKPEAVRWEKLEGQGDVPNPKQFIADVKNLYPS 898
LKLRLLHPIIPEQSTFKVLSTKIEIKMKKPEAVRWEKLEGQGD P PKQF ADVKN+YPS
Sbjct: 191 LKLRLLHPIIPEQSTFKVLSTKIEIKMKKPEAVRWEKLEGQGDEPTPKQFTADVKNMYPS 250
Query: 899 SSHYTRNWDKLVGEIKEEEKNEKVGGRCS----FKQIIS 1003
SSHYTRNWDKLVGEIKEEEKNEK+ G + F+QI S
Sbjct: 251 SSHYTRNWDKLVGEIKEEEKNEKLEGDAALNKLFQQIYS 289
Score = 63.5 bits (153), Expect = 3e-10
Identities = 30/36 (83%), Positives = 34/36 (94%)
Frame = +3
Query: 945 KKKKRMRKLEGDAALNKLFQQIYSDGSDEVKRAMNK 1052
K++++ KLEGDAALNKLFQQIYSDGSDEVKRAMNK
Sbjct: 266 KEEEKNEKLEGDAALNKLFQQIYSDGSDEVKRAMNK 301
>ref|NP_033916.1| calcyclin-binding protein [Mus musculus].
Length = 229
Score = 42.7 bits (99), Expect(2) = 1e-06
Identities = 32/89 (35%), Positives = 48/89 (53%), Gaps = 5/89 (5%)
Frame = +2
Query: 581 YDWYQTES--QVIITLM-IKNVQKNDVNVEFSEKELSALVKLPSGDDYNLKL-RLLHPII 748
Y W Q++ ++ ITL + V +V V F+E+ LVK +G +Y++ + LL PI
Sbjct: 79 YGWDQSDKFVKIYITLTGVHQVPTENVQVHFTERSFDLLVKNLNGKNYSMIVNNLLKPIS 138
Query: 749 PEQSTFKV-LSTKIEIKMKKPEAVRWEKL 832
E S+ KV T I + KK E RW+ L
Sbjct: 139 VESSSKKVKTDTVIILCRKKAENTRWDYL 167
Score = 28.5 bits (62), Expect(2) = 1e-06
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Frame = +3
Query: 945 KKKKRMRKLEGDAA--LNKLFQQIYSDGSDEVKRAMNK 1052
+K+K E D + L + ++IY DG D++KR +NK
Sbjct: 176 EKEKPSYDTEADPSEGLMNVLKKIYEDGDDDMKRTINK 213
>ref|NP_078775.1| small glutamine-rich tetratricopeptide repeat-containing protein
alpha [Mus musculus].
Length = 315
Score = 51.6 bits (122), Expect = 1e-06
Identities = 28/85 (32%), Positives = 47/85 (55%)
Frame = +2
Query: 218 EDPQAALEELSKALEQKPDDAQYYCQRAYCHILLGNYHDAVADAKKSLELNPNGSTAMLR 397
E+ +AA+ KA+E P +A Y+C RA + LGNY AV D ++++ ++P S A R
Sbjct: 106 ENFEAAVHLYGKAIELNPANAVYFCNRAAAYSKLGNYVGAVQDCERAIGIDPGYSKAYGR 165
Query: 398 KGICEYHEKNYAAALETFTEGQKLD 472
G+ +A A+ + + +LD
Sbjct: 166 MGLALSSLNKHAEAVAYYKKALELD 190
>ref|NP_058017.1| stress-induced-phosphoprotein 1 [Mus musculus].
Length = 543
Score = 51.2 bits (121), Expect = 1e-06
Identities = 31/117 (26%), Positives = 55/117 (47%)
Frame = +2
Query: 221 DPQAALEELSKALEQKPDDAQYYCQRAYCHILLGNYHDAVADAKKSLELNPNGSTAMLRK 400
D A++ ++A+++ P DA+ Y RA C+ L + A+ D ++ ++L P RK
Sbjct: 375 DYPQAMKHYTEAIKRNPRDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRK 434
Query: 401 GICEYHEKNYAAALETFTEGQKLDSADTDFIVWIKRCEEAQNGSQSEVSASQRTHQS 571
K+Y A++ + + LDS+ C+EA +G Q + A H S
Sbjct: 435 AAALEAMKDYTKAMDVYQKALDLDSS----------CKEAADGYQRCMMAQYNRHDS 481
>ref|NP_062769.2| dnaJ homolog subfamily C member 7 [Mus musculus].
Length = 494
Score = 50.4 bits (119), Expect = 2e-06
Identities = 27/86 (31%), Positives = 47/86 (54%)
Frame = +2
Query: 215 EEDPQAALEELSKALEQKPDDAQYYCQRAYCHILLGNYHDAVADAKKSLELNPNGSTAML 394
++D A +KA++ P++A YY RA ++LG + +A+ DA++S+ L+ + L
Sbjct: 41 KKDYNEAYNYYTKAIDMCPNNASYYGNRAATLMMLGRFREALGDAQQSVRLDDSFVRGHL 100
Query: 395 RKGICEYHEKNYAAALETFTEGQKLD 472
R+G C N AA +F +LD
Sbjct: 101 REGKCHLSLGNAMAACRSFQRALELD 126
>ref|NP_659087.1| small glutamine-rich tetratricopeptide repeat-containing protein
beta [Mus musculus].
Length = 304
Score = 50.4 bits (119), Expect = 2e-06
Identities = 28/101 (27%), Positives = 53/101 (52%)
Frame = +2
Query: 215 EEDPQAALEELSKALEQKPDDAQYYCQRAYCHILLGNYHDAVADAKKSLELNPNGSTAML 394
EE+ AA++ ++A+E P++A YYC RA L +Y DA+ D +K++ ++ S A
Sbjct: 98 EENYAAAVDCYTQAIELDPNNAVYYCNRAAAQSKLSHYTDAIKDCEKAIAIDSKYSKAYG 157
Query: 395 RKGICEYHEKNYAAALETFTEGQKLDSADTDFIVWIKRCEE 517
R G+ + A+ ++ + LD + + +K E+
Sbjct: 158 RMGLALTAMNKFEEAVTSYQKALDLDPENDSYKSNLKIAEQ 198
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 29,022,784
Number of extensions: 644110
Number of successful extensions: 3097
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 3062
Number of HSP's successfully gapped: 8
Length of query: 350
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 248
Effective length of database: 12,553,887
Effective search space: 3113363976
Effective search space used: 3113363976
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003102
(1052 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003134059.1| PREDICTED: small glutamine-rich tetratricope... 53 3e-07
Alignment gi|XP_003353842.1| PREDICTED: stress-induced-phosphoprotein 1-l... 51 9e-07
Alignment gi|XP_003123075.1| PREDICTED: small glutamine-rich tetratricope... 51 1e-06
Alignment gi|XP_003131457.1| PREDICTED: dnaJ homolog subfamily C member 7... 50 3e-06
Alignment gi|XP_001926679.2| PREDICTED: tetratricopeptide repeat protein ... 49 4e-06
Alignment gi|XP_001926697.1| PREDICTED: tetratricopeptide repeat protein ... 49 4e-06
Alignment gi|XP_003128021.1| PREDICTED: tetratricopeptide repeat protein ... 49 5e-06
>ref|XP_003134059.1| PREDICTED: small glutamine-rich tetratricopeptide repeat-containing
protein beta-like [Sus scrofa].
Length = 304
Score = 52.8 bits (125), Expect = 3e-07
Identities = 29/101 (28%), Positives = 54/101 (53%)
Frame = +2
Query: 215 EEDPQAALEELSKALEQKPDDAQYYCQRAYCHILLGNYHDAVADAKKSLELNPNGSTAML 394
EE+ AA++ ++A+E P++A YYC RA LG+Y DA+ D +K++ ++ S A
Sbjct: 98 EENYAAAVDCYTQAIELDPNNAVYYCNRAAAQSKLGHYTDAIKDCEKAIAIDSKYSKAYG 157
Query: 395 RKGICEYHEKNYAAALETFTEGQKLDSADTDFIVWIKRCEE 517
R G+ + A+ ++ + LD + + +K E+
Sbjct: 158 RMGLALTAMNKFEEAVTSYQKALDLDPENDSYKSNLKIAEQ 198
>ref|XP_003353842.1| PREDICTED: stress-induced-phosphoprotein 1-like [Sus scrofa].
Length = 543
Score = 51.2 bits (121), Expect = 9e-07
Identities = 31/117 (26%), Positives = 54/117 (46%)
Frame = +2
Query: 221 DPQAALEELSKALEQKPDDAQYYCQRAYCHILLGNYHDAVADAKKSLELNPNGSTAMLRK 400
D A++ ++A+++ P DA+ Y RA C+ L + A+ D ++ ++L P RK
Sbjct: 375 DYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRK 434
Query: 401 GICEYHEKNYAAALETFTEGQKLDSADTDFIVWIKRCEEAQNGSQSEVSASQRTHQS 571
K+Y A++ + + LD+ C+EA +G Q V A H S
Sbjct: 435 AAALEAMKDYTKAMDVYQKALDLDA----------NCKEAADGYQRCVMAQYNRHDS 481
>ref|XP_003123075.1| PREDICTED: small glutamine-rich tetratricopeptide repeat-containing
protein alpha-like [Sus scrofa].
Length = 313
Score = 50.8 bits (120), Expect = 1e-06
Identities = 27/85 (31%), Positives = 47/85 (55%)
Frame = +2
Query: 218 EDPQAALEELSKALEQKPDDAQYYCQRAYCHILLGNYHDAVADAKKSLELNPNGSTAMLR 397
E+ +AA+ KA+E P +A Y+C RA + LGNY AV D ++++ ++P+ S A R
Sbjct: 105 ENFEAAVHFYGKAIELNPSNAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPSYSKAYGR 164
Query: 398 KGICEYHEKNYAAALETFTEGQKLD 472
G+ + A+ + + +LD
Sbjct: 165 MGLALSSLNKHTEAVAYYRKALELD 189
>ref|XP_003131457.1| PREDICTED: dnaJ homolog subfamily C member 7 isoform 1 [Sus
scrofa].
Length = 494
Score = 49.7 bits (117), Expect = 3e-06
Identities = 27/86 (31%), Positives = 46/86 (53%)
Frame = +2
Query: 215 EEDPQAALEELSKALEQKPDDAQYYCQRAYCHILLGNYHDAVADAKKSLELNPNGSTAML 394
++D A +KA++ P +A YY RA ++LG + +A+ DA++S+ L+ + L
Sbjct: 41 KKDYNEAYNYYTKAIDMCPKNASYYGNRAATLMMLGRFREALGDAQQSVRLDDSFVRGHL 100
Query: 395 RKGICEYHEKNYAAALETFTEGQKLD 472
R+G C N AA +F +LD
Sbjct: 101 REGKCHLSLGNAMAACRSFQRALELD 126
>ref|XP_001926679.2| PREDICTED: tetratricopeptide repeat protein 13 isoform 1 [Sus
scrofa].
Length = 804
Score = 49.3 bits (116), Expect = 4e-06
Identities = 31/85 (36%), Positives = 48/85 (56%), Gaps = 2/85 (2%)
Frame = +2
Query: 233 ALEELSKALEQKPDDAQYYCQRAYCHILLGNYHDAVADAKKSLELNPNGSTAMLRKGICE 412
A+ +L+KA++ +P A+ Y R + + +Y A D ++SLELN N AML KG+
Sbjct: 180 AVNDLTKAIQLQPS-ARLYRHRGTLYFISEDYATAHEDFQQSLELNKNQPIAMLYKGLTF 238
Query: 413 YHEKNYAAALETFTEG--QKLDSAD 481
+H A+E+F E QK+D D
Sbjct: 239 FHRGLLKEAIESFKEALKQKVDFID 263
>ref|XP_001926697.1| PREDICTED: tetratricopeptide repeat protein 13 isoform 2 [Sus
scrofa].
Length = 858
Score = 49.3 bits (116), Expect = 4e-06
Identities = 31/85 (36%), Positives = 48/85 (56%), Gaps = 2/85 (2%)
Frame = +2
Query: 233 ALEELSKALEQKPDDAQYYCQRAYCHILLGNYHDAVADAKKSLELNPNGSTAMLRKGICE 412
A+ +L+KA++ +P A+ Y R + + +Y A D ++SLELN N AML KG+
Sbjct: 233 AVNDLTKAIQLQPS-ARLYRHRGTLYFISEDYATAHEDFQQSLELNKNQPIAMLYKGLTF 291
Query: 413 YHEKNYAAALETFTEG--QKLDSAD 481
+H A+E+F E QK+D D
Sbjct: 292 FHRGLLKEAIESFKEALKQKVDFID 316
>ref|XP_003128021.1| PREDICTED: tetratricopeptide repeat protein 4 [Sus scrofa].
Length = 388
Score = 48.9 bits (115), Expect = 5e-06
Identities = 33/143 (23%), Positives = 69/143 (48%), Gaps = 4/143 (2%)
Frame = +2
Query: 200 SDALIEEDPQAALEELSKALEQK---PD-DAQYYCQRAYCHILLGNYHDAVADAKKSLEL 367
+D E+D + A+ ++ L++K PD +A Y RA LGN+ A+ D + +L
Sbjct: 87 NDYFKEKDYKKAVISYTEGLKKKCADPDLNAVLYTNRAAAQYYLGNFRSALNDVTAARKL 146
Query: 368 NPNGSTAMLRKGICEYHEKNYAAALETFTEGQKLDSADTDFIVWIKRCEEAQNGSQSEVS 547
P A++R +C KNY A+ EG ++D+ + + + ++ + Q ++
Sbjct: 147 KPCHLKAIVRGALCHLELKNYGEAVTWCDEGLQIDATEKKLLEMRAKADKLKRTEQRDI- 205
Query: 548 ASQRTHQSKIKYDWYQTESQVII 616
++K+K Q +++ ++
Sbjct: 206 -----RKAKLKEKKEQNQNEALL 223
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 21,072,590
Number of extensions: 462243
Number of successful extensions: 2212
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 2193
Number of HSP's successfully gapped: 7
Length of query: 350
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 250
Effective length of database: 8,854,232
Effective search space: 2213558000
Effective search space used: 2213558000
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003102
(1052 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr11 339 2e-90
>Sscrofa_Chr11
|| Length = 87690581
Score = 339 bits (171), Expect = 2e-90
Identities = 178/179 (99%), Gaps = 1/179 (0%)
Strand = Plus / Plus
Query: 874 agatgtaaaaaacctatatccatcatcatctcattacacaagaaattgggataaattggt 933
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26430023 agatgtaaaaaacctatatccatcatcatctcattacacaagaaattgggataaattggt 26430082
Query: 934 tggtgagatcaaagaagaagaaaagaatgagaaagttggagggagatgcagctttaaaca 993
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 26430083 tggtgagatcaaagaagaagaaaagaatgag-aagttggagggagatgcagctttaaaca 26430141
Query: 994 aattatttcagcagatctattcagatggttctgatgaagtgaaacgtgccatgaacaaa 1052
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26430142 aattatttcagcagatctattcagatggttctgatgaagtgaaacgtgccatgaacaaa 26430200
Score = 335 bits (169), Expect = 3e-89
Identities = 169/169 (100%)
Strand = Plus / Plus
Query: 17 gtggctgctcgttggctccttaggacggaagctcggttggtgtttctccagaagtttccc 76
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26394054 gtggctgctcgttggctccttaggacggaagctcggttggtgtttctccagaagtttccc 26394113
Query: 77 ccttgggcggcggcggactggtaacctcggtaggagcggctccagcagcggtaacagtga 136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26394114 ccttgggcggcggcggactggtaacctcggtaggagcggctccagcagcggtaacagtga 26394173
Query: 137 ccagtagggatggcggcggctgcagcgggacctgcaacggcccaaaggt 185
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26394174 ccagtagggatggcggcggctgcagcgggacctgcaacggcccaaaggt 26394222
Score = 218 bits (110), Expect = 5e-54
Identities = 110/110 (100%)
Strand = Plus / Plus
Query: 675 agttgtctgctttggtgaaacttccttctggagatgattacaatttgaagctgagacttc 734
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26412629 agttgtctgctttggtgaaacttccttctggagatgattacaatttgaagctgagacttc 26412688
Query: 735 ttcatcccataataccagaacagagcacatttaaagtactttcaacaaag 784
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26412689 ttcatcccataataccagaacagagcacatttaaagtactttcaacaaag 26412738
Score = 192 bits (97), Expect = 3e-46
Identities = 97/97 (100%)
Strand = Plus / Plus
Query: 580 gtatgactggtatcaaacagaatctcaagtaatcattacacttatgatcaagaatgttca 639
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26411733 gtatgactggtatcaaacagaatctcaagtaatcattacacttatgatcaagaatgttca 26411792
Query: 640 gaagaatgatgtaaatgtggaattttcagaaaaagag 676
|||||||||||||||||||||||||||||||||||||
Sbjct: 26411793 gaagaatgatgtaaatgtggaattttcagaaaaagag 26411829
Score = 184 bits (93), Expect = 7e-44
Identities = 93/93 (100%)
Strand = Plus / Plus
Query: 240 aggagctgtctaaggctttggagcagaaaccagatgatgcacagtattactgtcagagag 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26400868 aggagctgtctaaggctttggagcagaaaccagatgatgcacagtattactgtcagagag 26400927
Query: 300 cttattgtcacattcttcttgggaattaccatg 332
|||||||||||||||||||||||||||||||||
Sbjct: 26400928 cttattgtcacattcttcttgggaattaccatg 26400960
Score = 184 bits (93), Expect = 7e-44
Identities = 93/93 (100%)
Strand = Plus / Plus
Query: 783 agatcgaaattaaaatgaaaaagccagaagctgtgagatgggaaaagctggagggacaag 842
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26425713 agatcgaaattaaaatgaaaaagccagaagctgtgagatgggaaaagctggagggacaag 26425772
Query: 843 gagatgtgcctaaccccaaacagttcatagcag 875
|||||||||||||||||||||||||||||||||
Sbjct: 26425773 gagatgtgcctaaccccaaacagttcatagcag 26425805
Score = 143 bits (72), Expect = 2e-31
Identities = 72/72 (100%)
Strand = Plus / Plus
Query: 332 gatgctgttgctgatgcaaagaaatctcttgaacttaatccaaatggttccactgcgatg 391
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26402169 gatgctgttgctgatgcaaagaaatctcttgaacttaatccaaatggttccactgcgatg 26402228
Query: 392 ctgagaaagggg 403
||||||||||||
Sbjct: 26402229 ctgagaaagggg 26402240
Score = 121 bits (61), Expect = 8e-25
Identities = 61/61 (100%)
Strand = Plus / Plus
Query: 182 aggtttttccggagcttctcagatgctctgatcgaagaggacccccaggcggcgttagag 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26394316 aggtttttccggagcttctcagatgctctgatcgaagaggacccccaggcggcgttagag 26394375
Query: 242 g 242
|
Sbjct: 26394376 g 26394376
Score = 109 bits (55), Expect = 3e-21
Identities = 55/55 (100%)
Strand = Plus / Plus
Query: 474 gtgcagatactgatttcattgtctggattaaaaggtgtgaagaagctcagaatgg 528
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26407847 gtgcagatactgatttcattgtctggattaaaaggtgtgaagaagctcagaatgg 26407901
Score = 105 bits (53), Expect = 5e-20
Identities = 67/74 (90%)
Strand = Plus / Plus
Query: 402 ggatatgcgaataccatgnnnnnnnctatgctgctgctctagaaacttttacagaaggac 461
|||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 26405051 ggatatgcgaataccatgaaaaaaactatgctgctgctctagaaacttttacagaaggac 26405110
Query: 462 agaaactagatagt 475
||||||||||||||
Sbjct: 26405111 agaaactagatagt 26405124
Score = 77.8 bits (39), Expect = 1e-11
Identities = 39/39 (100%)
Strand = Plus / Plus
Query: 544 gtctgcatcccagaggactcatcagtcaaaaatcaagta 582
|||||||||||||||||||||||||||||||||||||||
Sbjct: 26409861 gtctgcatcccagaggactcatcagtcaaaaatcaagta 26409899
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 34,919,033
Number of extensions: 325
Number of successful extensions: 325
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 323
Number of HSP's successfully gapped: 11
Length of query: 1052
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1031
Effective length of database: 2,808,413,156
Effective search space: 2895473963836
Effective search space used: 2895473963836
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)