Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003151
(1117 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001103552.1| RNA binding motif protein 34 [Bos taurus]. 381 e-107
>ref|NP_001103552.1| RNA binding motif protein 34 [Bos taurus].
Length = 272
Score = 381 bits (979), Expect(2) = e-107
Identities = 201/264 (76%), Positives = 220/264 (83%), Gaps = 4/264 (1%)
Frame = +3
Query: 72 MAPEGKNKRKKKQSAQEGENVDGGSRGNLAGGYLIGQVANSLSQGKRPSGGSAGRLASLF 251
MA EGKNKR+KKQSAQEG+N D G+ GNL G Y +GQVANSL +GK+PS GS GRLASLF
Sbjct: 1 MALEGKNKREKKQSAQEGQNPDDGACGNLEGDYEVGQVANSLFRGKQPSRGSTGRLASLF 60
Query: 252 SSLEPQLQPLYVPLPKETTKKRKQDEEEARSSQIQRPLLQEPAKTXXXXXXXXXXXXXXX 431
S+ PQLQP+YVP+P+E KKRK+DEEE S QIQRPLLQEPAK
Sbjct: 61 GSVNPQLQPVYVPVPEEAIKKRKRDEEEESSPQIQRPLLQEPAKKMKVKKKLSDAEKKLA 120
Query: 432 NRENALASADLEEEIRQKQGQKRKNSQSGVTIA----LDDVDQTVVNPRRKIQTNKEEER 599
NRE+ALASADLEEEI QKQGQKRKNSQ GVT+A LDDV++TVVN R+KIQ N+EEER
Sbjct: 121 NREDALASADLEEEIHQKQGQKRKNSQPGVTVADKELLDDVEETVVNQRKKIQINQEEER 180
Query: 600 LKNERTVFVGNLPVTCNKKKLKSFFKEYGQIESVRFRSLIPAEGTLSKKLAAIKRKIHPD 779
LKNERTVFVGNLPVTCNKKKLKSFFKEYGQIESVRFRSLIPAEGTLSKKLAAIKRKIHPD
Sbjct: 181 LKNERTVFVGNLPVTCNKKKLKSFFKEYGQIESVRFRSLIPAEGTLSKKLAAIKRKIHPD 240
Query: 780 QKNINAYVVFKDESAAAKALERNG 851
QKNINAYVVFKDESAA KA ++ G
Sbjct: 241 QKNINAYVVFKDESAATKAGKKWG 264
Score = 26.2 bits (56), Expect(2) = e-107
Identities = 10/12 (83%), Positives = 10/12 (83%)
Frame = +2
Query: 839 GKKWGPNCRWIS 874
GKKWGP CR IS
Sbjct: 260 GKKWGPICRRIS 271
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 35,038,967
Number of extensions: 825707
Number of successful extensions: 3664
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3647
Number of HSP's successfully gapped: 2
Length of query: 372
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 268
Effective length of database: 14,240,222
Effective search space: 3816379496
Effective search space used: 3816379496
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003151
(1117 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_536341.2| PREDICTED: similar to RNA binding motif protein... 433 e-137
>ref|XP_536341.2| PREDICTED: similar to RNA binding motif protein 34 [Canis
familiaris].
Length = 531
Score = 433 bits (1113), Expect(3) = e-137
Identities = 229/314 (72%), Positives = 256/314 (81%), Gaps = 3/314 (0%)
Frame = +3
Query: 66 VRMAPEGKNKRKKKQSAQEGENVDGGSRGNLAGGYLIGQVANSLSQGKRPSGGSAGRLAS 245
+RM EGKNKRKKK A+EGE D RG L G Y++GQVA SL QG+RPSG SA RLAS
Sbjct: 106 MRMLVEGKNKRKKKGGAEEGERPDDDVRGTLTGDYVVGQVARSLFQGRRPSGDSAARLAS 165
Query: 246 LFSSLEPQLQPLYVPLPKETTKKRKQDEEEARSSQIQRPLLQEPAKTXXXXXXXXXXXXX 425
LFSS EPQLQP+YVP+P+ETT KRK+DEEE +SQIQRPLLQEP+K+
Sbjct: 166 LFSSSEPQLQPVYVPVPRETTTKRKRDEEEESTSQIQRPLLQEPSKSVKAKKKLSDAH-- 223
Query: 426 XXNRENALASADLEEEIRQKQGQKRKNSQSGVTIA---LDDVDQTVVNPRRKIQTNKEEE 596
R+N LAS DLEEEI QKQ QKR N QSG+ +A + DVD V+N R+KI+ N+EEE
Sbjct: 224 --KRKNTLASRDLEEEIHQKQEQKRNNFQSGINVADKKVLDVDHIVLNQRKKIEINQEEE 281
Query: 597 RLKNERTVFVGNLPVTCNKKKLKSFFKEYGQIESVRFRSLIPAEGTLSKKLAAIKRKIHP 776
+LKNERTVFVGNLPVTCNKKKLKSFF+EYGQI+SVRFRSLIPAEGTLSKKLAAIKRKIHP
Sbjct: 282 KLKNERTVFVGNLPVTCNKKKLKSFFREYGQIDSVRFRSLIPAEGTLSKKLAAIKRKIHP 341
Query: 777 DQKNINAYVVFKDESAAAKALERNGAQIADGFRIRVDLASETSSRDKRSVFVGNLPYKVE 956
DQK INAYVVFKDES+A KAL+RNGAQIADGFRIRVDLASETSSRDKRSVFVGNLPYKVE
Sbjct: 342 DQKYINAYVVFKDESSATKALKRNGAQIADGFRIRVDLASETSSRDKRSVFVGNLPYKVE 401
Query: 957 ESAVENTFWTVGAL 998
ESAVE F G++
Sbjct: 402 ESAVEEHFLDCGSI 415
Score = 62.0 bits (149), Expect(3) = e-137
Identities = 27/32 (84%), Positives = 31/32 (96%)
Frame = +2
Query: 971 KHFLDCGSVVAVRIVRDPVTGVGKGFGYLLFE 1066
+HFLDCGS+VAVRIVRD VTGVG+GFGY+LFE
Sbjct: 407 EHFLDCGSIVAVRIVRDRVTGVGRGFGYVLFE 438
Score = 34.3 bits (77), Expect(3) = e-137
Identities = 15/17 (88%), Positives = 17/17 (100%)
Frame = +1
Query: 1066 DTDAVHLALKINNSELM 1116
+TDAVHLALK+NNSELM
Sbjct: 439 NTDAVHLALKLNNSELM 455
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 36,750,266
Number of extensions: 861863
Number of successful extensions: 4691
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4611
Number of HSP's successfully gapped: 3
Length of query: 372
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 268
Effective length of database: 15,407,560
Effective search space: 4129226080
Effective search space used: 4129226080
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003151
(1117 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_055829.2| RNA-binding protein 34 isoform 1 [Homo sapiens]. 434 e-137
Alignment gi|NP_001155005.1| RNA-binding protein 34 isoform 2 [Homo sapie... 278 6e-75
>ref|NP_055829.2| RNA-binding protein 34 isoform 1 [Homo sapiens].
Length = 430
Score = 434 bits (1117), Expect(3) = e-137
Identities = 229/313 (73%), Positives = 258/313 (82%), Gaps = 4/313 (1%)
Frame = +3
Query: 72 MAPEGKNKRKKKQSAQEGENVDGGSRGNLAGGYLIGQVANSLSQGKRPSGGSAGRLASLF 251
MA EG +KRK+K+S QEGEN D G RG+ Y +GQVA+SL +G+ S G GRLASLF
Sbjct: 1 MALEGMSKRKRKRSVQEGENPDDGVRGSPPEDYRLGQVASSLFRGEHHSRGGTGRLASLF 60
Query: 252 SSLEPQLQPLYVPLPKETTKKRKQDEEEARSSQIQRPLLQEPAKTXXXXXXXXXXXXXXX 431
SSLEPQ+QP+YVP+PK+T KK K++EEE +SQI+RPL QEPAK
Sbjct: 61 SSLEPQIQPVYVPVPKQTIKKTKRNEEEESTSQIERPLSQEPAKKVKAKKKHTNAEKKLA 120
Query: 432 NRENALASADLEEEIRQKQGQKRKNSQSGVTIA----LDDVDQTVVNPRRKIQTNKEEER 599
+RE+ALASADLEEEI QKQGQKRKNSQ GV +A LDD + TVV+ R+KIQ N+EEER
Sbjct: 121 DRESALASADLEEEIHQKQGQKRKNSQPGVKVADRKILDDTEDTVVSQRKKIQINQEEER 180
Query: 600 LKNERTVFVGNLPVTCNKKKLKSFFKEYGQIESVRFRSLIPAEGTLSKKLAAIKRKIHPD 779
LKNERTVFVGNLPVTCNKKKLKSFFKEYGQIESVRFRSLIPAEGTLSKKLAAIKRKIHPD
Sbjct: 181 LKNERTVFVGNLPVTCNKKKLKSFFKEYGQIESVRFRSLIPAEGTLSKKLAAIKRKIHPD 240
Query: 780 QKNINAYVVFKDESAAAKALERNGAQIADGFRIRVDLASETSSRDKRSVFVGNLPYKVEE 959
QKNINAYVVFK+ESAA +AL+RNGAQIADGFRIRVDLASETSSRDKRSVFVGNLPYKVEE
Sbjct: 241 QKNINAYVVFKEESAATQALKRNGAQIADGFRIRVDLASETSSRDKRSVFVGNLPYKVEE 300
Query: 960 SAVENTFWTVGAL 998
SA+E F G++
Sbjct: 301 SAIEKHFLDCGSI 313
Score = 62.4 bits (150), Expect(3) = e-137
Identities = 26/32 (81%), Positives = 31/32 (96%)
Frame = +2
Query: 971 KHFLDCGSVVAVRIVRDPVTGVGKGFGYLLFE 1066
KHFLDCGS++AVRIVRD +TG+GKGFGY+LFE
Sbjct: 305 KHFLDCGSIMAVRIVRDKMTGIGKGFGYVLFE 336
Score = 33.1 bits (74), Expect(3) = e-137
Identities = 14/17 (82%), Positives = 17/17 (100%)
Frame = +1
Query: 1066 DTDAVHLALKINNSELM 1116
+TD+VHLALK+NNSELM
Sbjct: 337 NTDSVHLALKLNNSELM 353
>ref|NP_001155005.1| RNA-binding protein 34 isoform 2 [Homo sapiens].
Length = 225
Score = 278 bits (711), Expect = 6e-75
Identities = 147/220 (66%), Positives = 171/220 (77%), Gaps = 4/220 (1%)
Frame = +3
Query: 72 MAPEGKNKRKKKQSAQEGENVDGGSRGNLAGGYLIGQVANSLSQGKRPSGGSAGRLASLF 251
MA EG +KRK+K+S QEGEN D G RG+ Y +GQVA+SL +G+ S G GRLASLF
Sbjct: 1 MALEGMSKRKRKRSVQEGENPDDGVRGSPPEDYRLGQVASSLFRGEHHSRGGTGRLASLF 60
Query: 252 SSLEPQLQPLYVPLPKETTKKRKQDEEEARSSQIQRPLLQEPAKTXXXXXXXXXXXXXXX 431
SSLEPQ+QP+YVP+PK+T KK K++EEE +SQI+RPL QEPAK
Sbjct: 61 SSLEPQIQPVYVPVPKQTIKKTKRNEEEESTSQIERPLSQEPAKKVKAKKKHTNAEKKLA 120
Query: 432 NRENALASADLEEEIRQKQGQKRKNSQSGVTIA----LDDVDQTVVNPRRKIQTNKEEER 599
+RE+ALASADLEEEI QKQGQKRKNSQ GV +A LDD + TVV+ R+KIQ N+EEER
Sbjct: 121 DRESALASADLEEEIHQKQGQKRKNSQPGVKVADRKILDDTEDTVVSQRKKIQINQEEER 180
Query: 600 LKNERTVFVGNLPVTCNKKKLKSFFKEYGQIESVRFRSLI 719
LKNERTVFVGNLPVTCNKKKLKSFFKEYGQIESVRFRSL+
Sbjct: 181 LKNERTVFVGNLPVTCNKKKLKSFFKEYGQIESVRFRSLV 220
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 36,066,466
Number of extensions: 845150
Number of successful extensions: 3798
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3768
Number of HSP's successfully gapped: 4
Length of query: 372
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 268
Effective length of database: 14,868,908
Effective search space: 3984867344
Effective search space used: 3984867344
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003151
(1117 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_766350.2| RNA-binding protein 34 [Mus musculus]. 354 e-113
>ref|NP_766350.2| RNA-binding protein 34 [Mus musculus].
Length = 442
Score = 354 bits (909), Expect(3) = e-113
Identities = 195/320 (60%), Positives = 238/320 (74%), Gaps = 11/320 (3%)
Frame = +3
Query: 72 MAPEGKNKRKKKQSAQEGENVDGGSRGNLAGGYLIGQVANSLSQGKRPSGGSAGRLASLF 251
MA G+ ++++K S + + DG S A YL+GQVA+SL G RP GG GRLA+LF
Sbjct: 1 MALGGEERKRRKGSERRQSSGDGVSCA--ASDYLVGQVADSLRGGPRPPGGGTGRLAALF 58
Query: 252 SSLEPQLQPLYVPLPKETTKKRK----QDEEEARSSQIQRPLLQEPAKTXXXXXXXXXXX 419
S+ EP P++VP+P+ET+KKRK D+EE SQ ++P+LQEP++
Sbjct: 59 STAEPSAPPVFVPVPQETSKKRKLDDDDDDEEESVSQTKKPVLQEPSRKVKVKKLSDADK 118
Query: 420 XXXXNRENALASADLEEEIRQKQGQ-KRKNSQSGVTIALDDVDQTVVN------PRRKIQ 578
NRE+ALASADLEEE+ Q QGQ +R+ SQS +A + ++ R KI
Sbjct: 119 RLA-NRESALASADLEEELHQDQGQGRRRRSQSRGKVADGEALDVALSLAKDGGQRTKIP 177
Query: 579 TNKEEERLKNERTVFVGNLPVTCNKKKLKSFFKEYGQIESVRFRSLIPAEGTLSKKLAAI 758
N EEERLKNERTVFVGNLPVTCNKKKLKSFFKEYGQ+ESVRFRS++PAEGTL+KKLAAI
Sbjct: 178 VNPEEERLKNERTVFVGNLPVTCNKKKLKSFFKEYGQVESVRFRSVMPAEGTLTKKLAAI 237
Query: 759 KRKIHPDQKNINAYVVFKDESAAAKALERNGAQIADGFRIRVDLASETSSRDKRSVFVGN 938
KRK HPDQK+INAYVVFKDESAAAKAL+RNGAQIA+GFRIRVDLASET+SRDKRSVFVGN
Sbjct: 238 KRKFHPDQKSINAYVVFKDESAAAKALQRNGAQIAEGFRIRVDLASETASRDKRSVFVGN 297
Query: 939 LPYKVEESAVENTFWTVGAL 998
LPYK+E+SA+E F G++
Sbjct: 298 LPYKIEDSALEEHFLDCGSI 317
Score = 62.4 bits (150), Expect(3) = e-113
Identities = 26/32 (81%), Positives = 32/32 (100%)
Frame = +2
Query: 971 KHFLDCGSVVAVRIVRDPVTGVGKGFGYLLFE 1066
+HFLDCGS+VAVRIVR+P+TGVG+GFGY+LFE
Sbjct: 309 EHFLDCGSIVAVRIVRNPLTGVGRGFGYVLFE 340
Score = 34.3 bits (77), Expect(3) = e-113
Identities = 15/17 (88%), Positives = 17/17 (100%)
Frame = +1
Query: 1066 DTDAVHLALKINNSELM 1116
+TDAVHLALK+NNSELM
Sbjct: 341 NTDAVHLALKLNNSELM 357
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 30,761,268
Number of extensions: 715502
Number of successful extensions: 3113
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3090
Number of HSP's successfully gapped: 3
Length of query: 372
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 269
Effective length of database: 12,523,851
Effective search space: 3368915919
Effective search space used: 3368915919
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003151
(1117 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001925470.1| PREDICTED: RNA-binding protein 34 [Sus scrof... 549 e-173
>ref|XP_001925470.1| PREDICTED: RNA-binding protein 34 [Sus scrofa].
Length = 424
Score = 549 bits (1415), Expect(3) = e-173
Identities = 287/309 (92%), Positives = 289/309 (93%)
Frame = +3
Query: 72 MAPEGKNKRKKKQSAQEGENVDGGSRGNLAGGYLIGQVANSLSQGKRPSGGSAGRLASLF 251
MAPEGKNKRKKKQSAQEGENVDGGSRGNLAGGYLIGQVANSLSQGKRPSGGSAGRLASLF
Sbjct: 1 MAPEGKNKRKKKQSAQEGENVDGGSRGNLAGGYLIGQVANSLSQGKRPSGGSAGRLASLF 60
Query: 252 SSLEPQLQPLYVPLPKETTKKRKQDEEEARSSQIQRPLLQEPAKTXXXXXXXXXXXXXXX 431
SSLEPQLQPLYVPLPKETTKKRKQDEEEARSSQIQRPLLQEPAKT
Sbjct: 61 SSLEPQLQPLYVPLPKETTKKRKQDEEEARSSQIQRPLLQEPAKTVKVKKKLSDADKKLA 120
Query: 432 NRENALASADLEEEIRQKQGQKRKNSQSGVTIALDDVDQTVVNPRRKIQTNKEEERLKNE 611
NRENALASADLEEEIRQKQGQKRKNSQSGVTIALDDVDQTVVNPRRKIQTNKEEERLKNE
Sbjct: 121 NRENALASADLEEEIRQKQGQKRKNSQSGVTIALDDVDQTVVNPRRKIQTNKEEERLKNE 180
Query: 612 RTVFVGNLPVTCNKKKLKSFFKEYGQIESVRFRSLIPAEGTLSKKLAAIKRKIHPDQKNI 791
RTVFVGNLPVTCNKKKLKSFFKEYGQIESVRFRSLIPAEGTLSKKLAAIKRKIHPDQKNI
Sbjct: 181 RTVFVGNLPVTCNKKKLKSFFKEYGQIESVRFRSLIPAEGTLSKKLAAIKRKIHPDQKNI 240
Query: 792 NAYVVFKDESAAAKALERNGAQIADGFRIRVDLASETSSRDKRSVFVGNLPYKVEESAVE 971
NAYVVFKDESAAAKALERNGAQIADGFRIRVDLASETSSRDKRSVFVGNLPYKVEESAVE
Sbjct: 241 NAYVVFKDESAAAKALERNGAQIADGFRIRVDLASETSSRDKRSVFVGNLPYKVEESAVE 300
Query: 972 NTFWTVGAL 998
F G++
Sbjct: 301 KHFLDCGSV 309
Score = 67.4 bits (163), Expect(3) = e-173
Identities = 30/32 (93%), Positives = 32/32 (100%)
Frame = +2
Query: 971 KHFLDCGSVVAVRIVRDPVTGVGKGFGYLLFE 1066
KHFLDCGSVVAVRIVRDPVTGVG+GFGY+LFE
Sbjct: 301 KHFLDCGSVVAVRIVRDPVTGVGRGFGYVLFE 332
Score = 34.3 bits (77), Expect(3) = e-173
Identities = 15/17 (88%), Positives = 17/17 (100%)
Frame = +1
Query: 1066 DTDAVHLALKINNSELM 1116
+TDAVHLALK+NNSELM
Sbjct: 333 NTDAVHLALKLNNSELM 349
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 22,518,653
Number of extensions: 528562
Number of successful extensions: 2453
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2428
Number of HSP's successfully gapped: 3
Length of query: 372
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 272
Effective length of database: 8,854,232
Effective search space: 2408351104
Effective search space used: 2408351104
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003151
(1117 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr14 440 e-121
Sscrofa_Chr03 438 e-120
>Sscrofa_Chr14
|| Length = 153851969
Score = 440 bits (222), Expect = e-121
Identities = 222/222 (100%)
Strand = Plus / Plus
Query: 435 agagaaaatgctttagcaagtgctgatttagaagaagaaattcgccagaaacaaggacag 494
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60200332 agagaaaatgctttagcaagtgctgatttagaagaagaaattcgccagaaacaaggacag 60200391
Query: 495 aaaaggaaaaattctcaatctggtgttacaatagcacttgatgatgtagatcagacagtt 554
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60200392 aaaaggaaaaattctcaatctggtgttacaatagcacttgatgatgtagatcagacagtt 60200451
Query: 555 gtaaatccaagaaggaaaatccaaaccaacaaagaagaagagagattaaagaatgagaga 614
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60200452 gtaaatccaagaaggaaaatccaaaccaacaaagaagaagagagattaaagaatgagaga 60200511
Query: 615 actgtgtttgttgggaatttgccagtcacctgtaataagaag 656
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60200512 actgtgtttgttgggaatttgccagtcacctgtaataagaag 60200553
Score = 351 bits (177), Expect = 5e-94
Identities = 177/177 (100%)
Strand = Plus / Plus
Query: 124 gagagaacgtggacggcggcagtcgtgggaatctggccggaggctatctgattggacaag 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60193511 gagagaacgtggacggcggcagtcgtgggaatctggccggaggctatctgattggacaag 60193570
Query: 184 tcgccaacagtttatcccaaggcaagaggccctccggaggcagcgccggccggctggctt 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60193571 tcgccaacagtttatcccaaggcaagaggccctccggaggcagcgccggccggctggctt 60193630
Query: 244 ccctcttcagctctttggagcctcagcttcaacccctgtacgtgcctctgcctaaag 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60193631 ccctcttcagctctttggagcctcagcttcaacccctgtacgtgcctctgcctaaag 60193687
Score = 246 bits (124), Expect = 2e-62
Identities = 124/124 (100%)
Strand = Plus / Plus
Query: 1 gagtgcgcaggggcagggacccggaagtgcggcctagcctgttgcagcggtctgggagct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60193278 gagtgcgcaggggcagggacccggaagtgcggcctagcctgttgcagcggtctgggagct 60193337
Query: 61 ttcgggtaagaatggcgccggaagggaagaacaagcggaagaaaaagcagagcgcgcagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60193338 ttcgggtaagaatggcgccggaagggaagaacaagcggaagaaaaagcagagcgcgcagg 60193397
Query: 121 aggg 124
||||
Sbjct: 60193398 aggg 60193401
Score = 240 bits (121), Expect = 1e-60
Identities = 121/121 (100%)
Strand = Plus / Plus
Query: 316 ggaaacaggatgaggaggaagcacgttcatcccaaattcaaagaccacttttacaagaac 375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60193902 ggaaacaggatgaggaggaagcacgttcatcccaaattcaaagaccacttttacaagaac 60193961
Query: 376 ctgcaaaaacagtgaaagtgaagaagaaactttctgatgcagacaaaaagttggcaaaca 435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60193962 ctgcaaaaacagtgaaagtgaagaagaaactttctgatgcagacaaaaagttggcaaaca 60194021
Query: 436 g 436
|
Sbjct: 60194022 g 60194022
Score = 204 bits (103), Expect = 7e-50
Identities = 116/119 (97%), Gaps = 1/119 (0%)
Strand = Plus / Plus
Query: 949 aagttgaagaatctgctgttga-aaacactttctggactgtgggagcgttgtggctgtaa 1007
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 60211238 aagttgaagaatctgctgttgagaaacactttctggactgtgggagcgttgtggctgtaa 60211297
Query: 1008 ggatcgtgcgagatccagtgacaggagttggcaaagggtttggctacctgctctttgag 1066
||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct: 60211298 ggatcgtgcgagatccagtgacaggagttggcagagggtttggctacgtgctctttgag 60211356
Score = 167 bits (84), Expect = 2e-38
Identities = 84/84 (100%)
Strand = Plus / Plus
Query: 761 acgtaaaattcatccagatcagaaaaatattaatgcttacgttgtgtttaaggatgagag 820
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60208119 acgtaaaattcatccagatcagaaaaatattaatgcttacgttgtgtttaaggatgagag 60208178
Query: 821 tgctgctgcaaaagcattggaaag 844
||||||||||||||||||||||||
Sbjct: 60208179 tgctgctgcaaaagcattggaaag 60208202
Score = 131 bits (66), Expect = 9e-28
Identities = 66/66 (100%)
Strand = Plus / Plus
Query: 843 agaaatggggcccaaattgcagatggatttcgtattagagtggatcttgcatctgagacc 902
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60208348 agaaatggggcccaaattgcagatggatttcgtattagagtggatcttgcatctgagacc 60208407
Query: 903 tcatct 908
||||||
Sbjct: 60208408 tcatct 60208413
Score = 123 bits (62), Expect = 2e-25
Identities = 62/62 (100%)
Strand = Plus / Plus
Query: 655 agaaactgaagtcattttttaaagagtatggacaaatagaatctgtacgatttcgttctc 714
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60202376 agaaactgaagtcattttttaaagagtatggacaaatagaatctgtacgatttcgttctc 60202435
Query: 715 tg 716
||
Sbjct: 60202436 tg 60202437
Score = 89.7 bits (45), Expect = 3e-15
Identities = 45/45 (100%)
Strand = Plus / Plus
Query: 716 gattccagcagaaggaactttatccaaaaagctggcagcaataaa 760
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60206126 gattccagcagaaggaactttatccaaaaagctggcagcaataaa 60206170
Score = 85.7 bits (43), Expect = 5e-14
Identities = 49/51 (96%)
Strand = Plus / Plus
Query: 1067 atacagatgctgttcatcttgctctgaaaattaataattctgaactgatgg 1117
||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct: 60213370 atacagatgctgttcatcttgctctgaaattaaataattctgaactgatgg 60213420
Score = 79.8 bits (40), Expect = 3e-12
Identities = 40/40 (100%)
Strand = Plus / Plus
Query: 909 agggacaagagatcagtgttcgtggggaatctcccataca 948
||||||||||||||||||||||||||||||||||||||||
Sbjct: 60210976 agggacaagagatcagtgttcgtggggaatctcccataca 60211015
>Sscrofa_Chr03
|| Length = 144787322
Score = 438 bits (221), Expect = e-120
Identities = 389/441 (88%), Gaps = 3/441 (0%)
Strand = Plus / Plus
Query: 678 gagtatggacaaatagaatctgtacgatttcgttctctgattccagcagaaggaacttta 737
|||| ||||||||||||||||||| |||||| |||||| ||||||||||| |||||||
Sbjct: 98274888 gagtgtggacaaatagaatctgtatgatttcattctctaattccagcagatggaacttcg 98274947
Query: 738 tccaaaaagctggcagcaataaaacgtaaaattcatccagatcagaaaaatattaatgct 797
||||||||||||||||||||||||| |||| || |||| ||||||| || |||||||||
Sbjct: 98274948 tccaaaaagctggcagcaataaaacataaagtttatcctgatcagagaac-attaatgct 98275006
Query: 798 tacgttgtgtttaaggatgagagtgctgctgcaaaagcattggaaagaaatggggcccaa 857
|| |||||||||||||| |||||| ||||||||||||||||||||||||| |||||||
Sbjct: 98275007 tatgttgtgtttaaggacaagagtgtggctgcaaaagcattggaaagaaatgtggcccaa 98275066
Query: 858 attgcagatggatttcgtattagagtggatcttgcatctgagacctcatctagggacaag 917
||||||||||||||| |||||||||||||||| |||||| |||||||||||||| |||||
Sbjct: 98275067 attgcagatggattttgtattagagtggatctcgcatctaagacctcatctaggaacaag 98275126
Query: 918 agatcagtgttcgtggggaatctcccatacaaagttgaagaatctgctgtt-gaaaacac 976
|||| ||||| ||||||||||||||| || |||||||||||| ||| ||| ||||| ||
Sbjct: 98275127 agattggtgtttgtggggaatctcccaaaccaagttgaagaatttgcagttggaaaagac 98275186
Query: 977 tttctggactgtgggagcgttgtggctgtaaggatcgtgcgagatccagtgacaggagtt 1036
||| ||||||||||||| |||||||| |||||||| ||| |||||| ||| |||||||||
Sbjct: 98275187 tttttggactgtgggagtgttgtggcagtaaggattgtgtgagatcgagttacaggagtt 98275246
Query: 1037 ggcaaagggtttggctacctgctctttgagatacagatgctgttcatcttgctctgaaaa 1096
|||| ||||||| ||| | |||| || |||||||||||||||||||||||||||||
Sbjct: 98275247 ggcagagggttt-gctccatgctgttcagaatacagatgctgttcatcttgctctgaaat 98275305
Query: 1097 ttaataattctgaactgatgg 1117
| ||||||||| |||||||||
Sbjct: 98275306 taaataattcttaactgatgg 98275326
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 39,744,097
Number of extensions: 297
Number of successful extensions: 297
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 294
Number of HSP's successfully gapped: 13
Length of query: 1117
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1096
Effective length of database: 2,808,413,156
Effective search space: 3078020818976
Effective search space used: 3078020818976
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)