Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003183
(979 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001030270.1| N-myc-interactor [Bos taurus]. 298 4e-81
Alignment gi|XP_002703673.1| PREDICTED: N-myc-interactor-like isoform 2 [... 298 4e-81
Alignment gi|XP_002703672.1| PREDICTED: N-myc-interactor-like isoform 1 [... 298 4e-81
Alignment gi|NP_001068930.1| interferon-induced protein 35 [Bos taurus]. 70 4e-12
>ref|NP_001030270.1| N-myc-interactor [Bos taurus].
Length = 309
Score = 298 bits (764), Expect = 4e-81
Identities = 158/229 (68%), Positives = 174/229 (75%)
Frame = +3
Query: 291 AEEVMKDEQNQKLIDELEKENIXXXXXXXXXXXXXXXXXXNSQIHEDIPETKIKFTSLEN 470
AEE+MKD+QNQKLI E+ KENI SQI+EDIPETKIKFTS+EN
Sbjct: 18 AEEIMKDKQNQKLISEITKENIQLKEEIKKLEAELQETTRTSQINEDIPETKIKFTSVEN 77
Query: 471 PESDRQFSNISYSCQVSSKVPYELQKGQALITFEKEEVAQNVIRMESHHVQMQGVKVKVM 650
PESD +FS+ISYSCQVSSKVPYELQKGQALITFEKEEVAQNVIRME HHVQ+Q V +
Sbjct: 78 PESDSEFSDISYSCQVSSKVPYELQKGQALITFEKEEVAQNVIRMEYHHVQVQNENVMLT 137
Query: 651 AKPVSLKSGVRFQVHVEVSKMKINVTEIPDVLPESQMRDKLELSFSKSRYGGGEMESVEY 830
A PVSL SGV+FQVHV VSKMKINVT+IPD LPESQMRDKLELSFSKSR GGGE+E VEY
Sbjct: 138 ANPVSLNSGVKFQVHVGVSKMKINVTDIPDELPESQMRDKLELSFSKSRNGGGEVEYVEY 197
Query: 831 DRQAGERCRHICGSGVADRILKMKDYAPLKNENCHRVMVGSIMETHFGK 977
++Q SGVAD+ILKMKDY N+NCHRV V ETH K
Sbjct: 198 NKQTRSALITFVESGVADKILKMKDYPLYINQNCHRVTVYPYTETHLKK 246
Score = 49.3 bits (116), Expect = 5e-06
Identities = 41/147 (27%), Positives = 69/147 (46%), Gaps = 10/147 (6%)
Frame = +3
Query: 417 QIHEDIPETKIKFTSL--ENPESD-RQFSNISYSCQVSSK-----VPYELQKGQALITFE 572
Q+H + + KI T + E PES R +S+S + V Y Q ALITF
Sbjct: 150 QVHVGVSKMKINVTDIPDELPESQMRDKLELSFSKSRNGGGEVEYVEYNKQTRSALITFV 209
Query: 573 KEEVAQNVIRMESHHVQMQGVKVKVMAKPVSLKSGVRFQVHVEVSKMKINVTEIP--DVL 746
+ VA +++M+ + + + +V P + +FQV VSK + +T +
Sbjct: 210 ESGVADKILKMKDYPLYINQNCHRVTVYPYTETHLKKFQVFSGVSKRTVLLTGLKHLQTT 269
Query: 747 PESQMRDKLELSFSKSRYGGGEMESVE 827
E + D + + F + + GGGE+E V+
Sbjct: 270 DEEVVEDFISIHFQREKNGGGEVEVVK 296
>ref|XP_002703673.1| PREDICTED: N-myc-interactor-like isoform 2 [Bos taurus].
Length = 309
Score = 298 bits (764), Expect = 4e-81
Identities = 158/229 (68%), Positives = 174/229 (75%)
Frame = +3
Query: 291 AEEVMKDEQNQKLIDELEKENIXXXXXXXXXXXXXXXXXXNSQIHEDIPETKIKFTSLEN 470
AEE+MKD+QNQKLI E+ KENI SQI+EDIPETKIKFTS+EN
Sbjct: 18 AEEIMKDKQNQKLISEITKENIQLKEEIKKLEAELQETTRTSQINEDIPETKIKFTSVEN 77
Query: 471 PESDRQFSNISYSCQVSSKVPYELQKGQALITFEKEEVAQNVIRMESHHVQMQGVKVKVM 650
PESD +FS+ISYSCQVSSKVPYELQKGQALITFEKEEVAQNVIRME HHVQ+Q V +
Sbjct: 78 PESDSEFSDISYSCQVSSKVPYELQKGQALITFEKEEVAQNVIRMEYHHVQVQNENVMLT 137
Query: 651 AKPVSLKSGVRFQVHVEVSKMKINVTEIPDVLPESQMRDKLELSFSKSRYGGGEMESVEY 830
A PVSL SGV+FQVHV VSKMKINVT+IPD LPESQMRDKLELSFSKSR GGGE+E VEY
Sbjct: 138 ANPVSLNSGVKFQVHVGVSKMKINVTDIPDELPESQMRDKLELSFSKSRNGGGEVEYVEY 197
Query: 831 DRQAGERCRHICGSGVADRILKMKDYAPLKNENCHRVMVGSIMETHFGK 977
++Q SGVAD+ILKMKDY N+NCHRV V ETH K
Sbjct: 198 NKQTRSALITFVESGVADKILKMKDYPLYINQNCHRVTVYPYTETHLKK 246
Score = 49.3 bits (116), Expect = 5e-06
Identities = 41/147 (27%), Positives = 69/147 (46%), Gaps = 10/147 (6%)
Frame = +3
Query: 417 QIHEDIPETKIKFTSL--ENPESD-RQFSNISYSCQVSSK-----VPYELQKGQALITFE 572
Q+H + + KI T + E PES R +S+S + V Y Q ALITF
Sbjct: 150 QVHVGVSKMKINVTDIPDELPESQMRDKLELSFSKSRNGGGEVEYVEYNKQTRSALITFV 209
Query: 573 KEEVAQNVIRMESHHVQMQGVKVKVMAKPVSLKSGVRFQVHVEVSKMKINVTEIP--DVL 746
+ VA +++M+ + + + +V P + +FQV VSK + +T +
Sbjct: 210 ESGVADKILKMKDYPLYINQNCHRVTVYPYTETHLKKFQVFSGVSKRTVLLTGLKHLQTT 269
Query: 747 PESQMRDKLELSFSKSRYGGGEMESVE 827
E + D + + F + + GGGE+E V+
Sbjct: 270 DEEVVEDFISIHFQREKNGGGEVEVVK 296
>ref|XP_002703672.1| PREDICTED: N-myc-interactor-like isoform 1 [Bos taurus].
Length = 309
Score = 298 bits (764), Expect = 4e-81
Identities = 158/229 (68%), Positives = 174/229 (75%)
Frame = +3
Query: 291 AEEVMKDEQNQKLIDELEKENIXXXXXXXXXXXXXXXXXXNSQIHEDIPETKIKFTSLEN 470
AEE+MKD+QNQKLI E+ KENI SQI+EDIPETKIKFTS+EN
Sbjct: 18 AEEIMKDKQNQKLISEITKENIQLKEEIKKLEAELQETTRTSQINEDIPETKIKFTSVEN 77
Query: 471 PESDRQFSNISYSCQVSSKVPYELQKGQALITFEKEEVAQNVIRMESHHVQMQGVKVKVM 650
PESD +FS+ISYSCQVSSKVPYELQKGQALITFEKEEVAQNVIRME HHVQ+Q V +
Sbjct: 78 PESDSEFSDISYSCQVSSKVPYELQKGQALITFEKEEVAQNVIRMEYHHVQVQNENVMLT 137
Query: 651 AKPVSLKSGVRFQVHVEVSKMKINVTEIPDVLPESQMRDKLELSFSKSRYGGGEMESVEY 830
A PVSL SGV+FQVHV VSKMKINVT+IPD LPESQMRDKLELSFSKSR GGGE+E VEY
Sbjct: 138 ANPVSLNSGVKFQVHVGVSKMKINVTDIPDELPESQMRDKLELSFSKSRNGGGEVEYVEY 197
Query: 831 DRQAGERCRHICGSGVADRILKMKDYAPLKNENCHRVMVGSIMETHFGK 977
++Q SGVAD+ILKMKDY N+NCHRV V ETH K
Sbjct: 198 NKQTRSALITFVESGVADKILKMKDYPLYINQNCHRVTVYPYTETHLKK 246
Score = 49.3 bits (116), Expect = 5e-06
Identities = 41/147 (27%), Positives = 69/147 (46%), Gaps = 10/147 (6%)
Frame = +3
Query: 417 QIHEDIPETKIKFTSL--ENPESD-RQFSNISYSCQVSSK-----VPYELQKGQALITFE 572
Q+H + + KI T + E PES R +S+S + V Y Q ALITF
Sbjct: 150 QVHVGVSKMKINVTDIPDELPESQMRDKLELSFSKSRNGGGEVEYVEYNKQTRSALITFV 209
Query: 573 KEEVAQNVIRMESHHVQMQGVKVKVMAKPVSLKSGVRFQVHVEVSKMKINVTEIP--DVL 746
+ VA +++M+ + + + +V P + +FQV VSK + +T +
Sbjct: 210 ESGVADKILKMKDYPLYINQNCHRVTVYPYTETHLKKFQVFSGVSKRTVLLTGLKHLQTT 269
Query: 747 PESQMRDKLELSFSKSRYGGGEMESVE 827
E + D + + F + + GGGE+E V+
Sbjct: 270 DEEVVEDFISIHFQREKNGGGEVEVVK 296
>ref|NP_001068930.1| interferon-induced protein 35 [Bos taurus].
Length = 263
Score = 69.7 bits (169), Expect = 4e-12
Identities = 40/139 (28%), Positives = 75/139 (53%), Gaps = 6/139 (4%)
Frame = +3
Query: 429 DIPETKIKFTSLENPESDR----QFSNISYSCQVSSKVPYELQKGQALITFEKEEVAQNV 596
D P+ K+ F E+P R + ++ S ++ Y L G AL+TF+ VA+ V
Sbjct: 12 DCPQDKVPFPVPESPLVFRGHFEEGKAMAKSVVSHVRICYPLPGGSALVTFDDPNVAKQV 71
Query: 597 IRMESHHVQMQGVKVKVMAKPVSLKSGVRFQVHVEVSKMKINVTEIPD--VLPESQMRDK 770
++ + H + ++G +++V +P+ L QV +++ ++ V+ P L E ++ DK
Sbjct: 72 LQQKEHQINVEGFRLRVQVQPLELPMLTTIQVSSQMNDQRVLVSGFPAGLKLSEEELLDK 131
Query: 771 LELSFSKSRYGGGEMESVE 827
LE+ F K++ GGG++E E
Sbjct: 132 LEIFFGKTKNGGGDVEMRE 150
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 28,596,742
Number of extensions: 596743
Number of successful extensions: 1998
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 1995
Number of HSP's successfully gapped: 7
Length of query: 326
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 224
Effective length of database: 14,306,398
Effective search space: 3204633152
Effective search space used: 3204633152
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003183
(979 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_533353.2| PREDICTED: similar to N-myc-interactor (Nmi) (N... 257 1e-68
Alignment gi|XP_548077.2| PREDICTED: similar to Interferon-induced 35 kDa... 67 2e-11
>ref|XP_533353.2| PREDICTED: similar to N-myc-interactor (Nmi) (N-myc and STAT
interactor) [Canis familiaris].
Length = 308
Score = 257 bits (657), Expect = 1e-68
Identities = 138/228 (60%), Positives = 159/228 (69%)
Frame = +3
Query: 285 WPAEEVMKDEQNQKLIDELEKENIXXXXXXXXXXXXXXXXXXNSQIHEDIPETKIKFTSL 464
W EEV K+E ++L D KENI NSQI EDIPETK+KFTSL
Sbjct: 15 WSNEEVTKNELRKRLTDRFTKENIQLKEEIQRLEAELQEATRNSQIKEDIPETKVKFTSL 74
Query: 465 ENPESDRQFSNISYSCQVSSKVPYELQKGQALITFEKEEVAQNVIRMESHHVQMQGVKVK 644
ENPE+D QF NIS S QVSS + YELQKGQALITFE+EEVAQNVIRM H + ++ V V+
Sbjct: 75 ENPETDSQFLNISCSFQVSSPIFYELQKGQALITFEREEVAQNVIRMGKHRIHIEDVDVE 134
Query: 645 VMAKPVSLKSGVRFQVHVEVSKMKINVTEIPDVLPESQMRDKLELSFSKSRYGGGEMESV 824
V+AKPV L SGVRFQVH EVSK+KINV+EIPD LPE QMRDKLELSFSKSR GGGE+ V
Sbjct: 135 VVAKPVPLNSGVRFQVHEEVSKVKINVSEIPDALPEDQMRDKLELSFSKSRNGGGEVLCV 194
Query: 825 EYDRQAGERCRHICGSGVADRILKMKDYAPLKNENCHRVMVGSIMETH 968
+Y R + +GVAD+ILK KDY NENC+ V+V ETH
Sbjct: 195 QYHRPSHSAVVTFMEAGVADKILKKKDYPLYINENCYNVIVSPYTETH 242
>ref|XP_548077.2| PREDICTED: similar to Interferon-induced 35 kDa protein (IFP 35)
[Canis familiaris].
Length = 286
Score = 67.4 bits (163), Expect = 2e-11
Identities = 43/145 (29%), Positives = 74/145 (51%), Gaps = 6/145 (4%)
Frame = +3
Query: 429 DIPETKIKFTSLENP---ESDRQFSNISYSCQVSS-KVPYELQKGQALITFEKEEVAQNV 596
DIP ++ F+ P Q +C VS ++ Y L G AL+ F+ +VA+ V
Sbjct: 34 DIPPDQVPFSVPALPLVFRGHTQQGKEVPTCLVSKLRICYPLPGGSALVNFDDPKVAERV 93
Query: 597 IRMESHHVQMQGVKVKVMAKPVSLKSGVRFQVHVEVSKMKINVTEIPDVL--PESQMRDK 770
++ + H + ++ +++V + + L QV ++S+ + V+ P L E ++ DK
Sbjct: 94 VQQKEHKIDIEECRLRVQVEALELPMVTTIQVSTQISRWSVLVSGFPAGLRLSEEELLDK 153
Query: 771 LELSFSKSRYGGGEMESVEYDRQAG 845
LE+ F K R GGGE+E+ E Q G
Sbjct: 154 LEIFFGKIRNGGGEVETRELLLQGG 178
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 30,026,126
Number of extensions: 621298
Number of successful extensions: 2241
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2237
Number of HSP's successfully gapped: 2
Length of query: 326
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 223
Effective length of database: 15,440,896
Effective search space: 3443319808
Effective search space used: 3443319808
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003183
(979 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_004679.2| N-myc-interactor [Homo sapiens]. 264 1e-70
Alignment gi|NP_005524.2| interferon-induced 35 kDa protein [Homo sapiens]. 63 4e-10
>ref|NP_004679.2| N-myc-interactor [Homo sapiens].
Length = 307
Score = 264 bits (674), Expect = 1e-70
Identities = 140/228 (61%), Positives = 162/228 (71%)
Frame = +3
Query: 294 EEVMKDEQNQKLIDELEKENIXXXXXXXXXXXXXXXXXXNSQIHEDIPETKIKFTSLENP 473
+E +KDEQN+ LIDE+ K+NI QI EDIPETK+KF S+E P
Sbjct: 18 DEFIKDEQNKGLIDEITKKNIQLKKEIQKLETELQEATKEFQIKEDIPETKMKFLSVETP 77
Query: 474 ESDRQFSNISYSCQVSSKVPYELQKGQALITFEKEEVAQNVIRMESHHVQMQGVKVKVMA 653
E+D Q SNIS S QVSSKVPYE+QKGQALITFEKEEVAQNV+ M HHVQ++ V ++V A
Sbjct: 78 ENDSQLSNISCSFQVSSKVPYEIQKGQALITFEKEEVAQNVVSMSKHHVQIKDVNLEVTA 137
Query: 654 KPVSLKSGVRFQVHVEVSKMKINVTEIPDVLPESQMRDKLELSFSKSRYGGGEMESVEYD 833
KPV L SGVRFQV+VEVSKMKINVTEIPD L E QMRDKLELSFSKSR GGGE++ V+YD
Sbjct: 138 KPVPLNSGVRFQVYVEVSKMKINVTEIPDTLREDQMRDKLELSFSKSRNGGGEVDRVDYD 197
Query: 834 RQAGERCRHICGSGVADRILKMKDYAPLKNENCHRVMVGSIMETHFGK 977
RQ+G GVAD+ILK K+Y N+ CHRV V E H K
Sbjct: 198 RQSGSAVITFVEIGVADKILKKKEYPLYINQTCHRVTVSPYTEIHLKK 245
>ref|NP_005524.2| interferon-induced 35 kDa protein [Homo sapiens].
Length = 288
Score = 63.2 bits (152), Expect = 4e-10
Identities = 47/168 (27%), Positives = 84/168 (50%), Gaps = 8/168 (4%)
Frame = +3
Query: 429 DIPETKIKFTSLENPESDR----QFSNISYSCQVSSKVPYELQKGQALITFEKEEVAQNV 596
D P+ K+ F+ + P R Q + S + ++ L G ALITF+ +VA+ V
Sbjct: 35 DSPKDKVPFSVPKIPLVFRGHTQQDPEVPKSLVSNLRIHCPLLAGSALITFDDPKVAEQV 94
Query: 597 IRMESHHVQMQGVKVKVMAKPVSLKSGVRFQVHV--EVSKMKINVTEIPDV--LPESQMR 764
++ + H + M+ +++V +P+ L QV + ++S ++ VT P L E ++
Sbjct: 95 LQQKEHTINMEECRLRVQVQPLELPMVTTIQVMMSSQLSGRRVLVTGFPASLRLSEEELL 154
Query: 765 DKLELSFSKSRYGGGEMESVEYDRQAGERCRHICGSGVADRILKMKDY 908
DKLE+ F K+R GGG+++ E G GVA R+ ++ +
Sbjct: 155 DKLEIFFGKTRNGGGDVDVREL--LPGSVMLGFARDGVAQRLCQIGQF 200
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 29,456,848
Number of extensions: 612063
Number of successful extensions: 2001
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1999
Number of HSP's successfully gapped: 2
Length of query: 326
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 223
Effective length of database: 14,901,872
Effective search space: 3323117456
Effective search space used: 3323117456
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003183
(979 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001135421.1| N-myc-interactor [Mus musculus]. 216 2e-56
Alignment gi|NP_001135420.1| N-myc-interactor [Mus musculus]. 216 2e-56
Alignment gi|NP_062274.1| N-myc-interactor [Mus musculus]. 216 2e-56
Alignment gi|NP_081596.1| interferon-induced 35 kDa protein homolog [Mus ... 62 9e-10
>ref|NP_001135421.1| N-myc-interactor [Mus musculus].
Length = 314
Score = 216 bits (550), Expect = 2e-56
Identities = 118/220 (53%), Positives = 144/220 (65%)
Frame = +3
Query: 303 MKDEQNQKLIDELEKENIXXXXXXXXXXXXXXXXXXNSQIHEDIPETKIKFTSLENPESD 482
M+ EQ+ L+ E+ EN QI E++PE K+K TS+E+P+
Sbjct: 22 MRGEQSMGLVHEIMSENKELDEEIKKLEAELQSDAREFQIKENVPEKKLKLTSVESPKDG 81
Query: 483 RQFSNISYSCQVSSKVPYELQKGQALITFEKEEVAQNVIRMESHHVQMQGVKVKVMAKPV 662
FSN S S QVSS++ YELQ+GQALITFEKEEVAQNVI M +H VQM+G VKV A PV
Sbjct: 82 CHFSNSSCSFQVSSQILYELQEGQALITFEKEEVAQNVISMGNHVVQMEGTPVKVSAHPV 141
Query: 663 SLKSGVRFQVHVEVSKMKINVTEIPDVLPESQMRDKLELSFSKSRYGGGEMESVEYDRQA 842
L +GVRFQVHV++SKMKINVT IPD L E Q RDKLELSF KSR GGGE+ESV+YDR++
Sbjct: 142 PLNTGVRFQVHVDISKMKINVTGIPDELSEEQTRDKLELSFCKSRNGGGEVESVDYDRKS 201
Query: 843 GERCRHICGSGVADRILKMKDYAPLKNENCHRVMVGSIME 962
+GV D+ILK K Y N+ CH V V +E
Sbjct: 202 RSAVITFVETGVVDKILKKKTYPLYMNQKCHSVAVSPCIE 241
>ref|NP_001135420.1| N-myc-interactor [Mus musculus].
Length = 314
Score = 216 bits (550), Expect = 2e-56
Identities = 118/220 (53%), Positives = 144/220 (65%)
Frame = +3
Query: 303 MKDEQNQKLIDELEKENIXXXXXXXXXXXXXXXXXXNSQIHEDIPETKIKFTSLENPESD 482
M+ EQ+ L+ E+ EN QI E++PE K+K TS+E+P+
Sbjct: 22 MRGEQSMGLVHEIMSENKELDEEIKKLEAELQSDAREFQIKENVPEKKLKLTSVESPKDG 81
Query: 483 RQFSNISYSCQVSSKVPYELQKGQALITFEKEEVAQNVIRMESHHVQMQGVKVKVMAKPV 662
FSN S S QVSS++ YELQ+GQALITFEKEEVAQNVI M +H VQM+G VKV A PV
Sbjct: 82 CHFSNSSCSFQVSSQILYELQEGQALITFEKEEVAQNVISMGNHVVQMEGTPVKVSAHPV 141
Query: 663 SLKSGVRFQVHVEVSKMKINVTEIPDVLPESQMRDKLELSFSKSRYGGGEMESVEYDRQA 842
L +GVRFQVHV++SKMKINVT IPD L E Q RDKLELSF KSR GGGE+ESV+YDR++
Sbjct: 142 PLNTGVRFQVHVDISKMKINVTGIPDELSEEQTRDKLELSFCKSRNGGGEVESVDYDRKS 201
Query: 843 GERCRHICGSGVADRILKMKDYAPLKNENCHRVMVGSIME 962
+GV D+ILK K Y N+ CH V V +E
Sbjct: 202 RSAVITFVETGVVDKILKKKTYPLYMNQKCHSVAVSPCIE 241
>ref|NP_062274.1| N-myc-interactor [Mus musculus].
Length = 314
Score = 216 bits (550), Expect = 2e-56
Identities = 118/220 (53%), Positives = 144/220 (65%)
Frame = +3
Query: 303 MKDEQNQKLIDELEKENIXXXXXXXXXXXXXXXXXXNSQIHEDIPETKIKFTSLENPESD 482
M+ EQ+ L+ E+ EN QI E++PE K+K TS+E+P+
Sbjct: 22 MRGEQSMGLVHEIMSENKELDEEIKKLEAELQSDAREFQIKENVPEKKLKLTSVESPKDG 81
Query: 483 RQFSNISYSCQVSSKVPYELQKGQALITFEKEEVAQNVIRMESHHVQMQGVKVKVMAKPV 662
FSN S S QVSS++ YELQ+GQALITFEKEEVAQNVI M +H VQM+G VKV A PV
Sbjct: 82 CHFSNSSCSFQVSSQILYELQEGQALITFEKEEVAQNVISMGNHVVQMEGTPVKVSAHPV 141
Query: 663 SLKSGVRFQVHVEVSKMKINVTEIPDVLPESQMRDKLELSFSKSRYGGGEMESVEYDRQA 842
L +GVRFQVHV++SKMKINVT IPD L E Q RDKLELSF KSR GGGE+ESV+YDR++
Sbjct: 142 PLNTGVRFQVHVDISKMKINVTGIPDELSEEQTRDKLELSFCKSRNGGGEVESVDYDRKS 201
Query: 843 GERCRHICGSGVADRILKMKDYAPLKNENCHRVMVGSIME 962
+GV D+ILK K Y N+ CH V V +E
Sbjct: 202 RSAVITFVETGVVDKILKKKTYPLYMNQKCHSVAVSPCIE 241
>ref|NP_081596.1| interferon-induced 35 kDa protein homolog [Mus musculus].
Length = 286
Score = 61.6 bits (148), Expect = 9e-10
Identities = 39/137 (28%), Positives = 69/137 (50%), Gaps = 6/137 (4%)
Frame = +3
Query: 435 PETKIKFTSLENP----ESDRQFSNISYSCQVSSKVPYELQKGQALITFEKEEVAQNVIR 602
P KI F+ E P +Q + + KV L +G AL+TFE +V +++
Sbjct: 37 PGAKIPFSVPEVPLVFQGQTKQGRQVPKFVVSNLKVCCPLPEGSALVTFEDPKVVDRLLQ 96
Query: 603 MESHHVQMQGVKVKVMAKPVSLKSGVRFQVHVEVSKMKINVTEIPD--VLPESQMRDKLE 776
+ H V ++ +++V +P+ L QV + ++ V+ P L E ++ DKLE
Sbjct: 97 QKEHRVNLEDCRLRVQVQPLELPVVTNIQVSSQPDNHRVLVSGFPAGLRLSEEELLDKLE 156
Query: 777 LSFSKSRYGGGEMESVE 827
+ F K++ GGG++E+ E
Sbjct: 157 IFFGKAKNGGGDVETRE 173
Score = 52.4 bits (124), Expect = 5e-07
Identities = 27/96 (28%), Positives = 51/96 (53%)
Frame = +3
Query: 537 ELQKGQALITFEKEEVAQNVIRMESHHVQMQGVKVKVMAKPVSLKSGVRFQVHVEVSKMK 716
E+ +G ++ F EEVAQ++ ++ V + +V + P + ++ + +
Sbjct: 173 EMLQGTVMLGFADEEVAQHLCQIGQFRVPLDRQQVLLRVSPYVSGEIQKAEIKFQQAPHS 232
Query: 717 INVTEIPDVLPESQMRDKLELSFSKSRYGGGEMESV 824
+ VT IPDV+ ++ D LE+ F K GGGE+E++
Sbjct: 233 VLVTNIPDVMDAQELHDILEIHFQKPTRGGGEVEAL 268
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 25,040,667
Number of extensions: 516770
Number of successful extensions: 1690
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 1688
Number of HSP's successfully gapped: 5
Length of query: 326
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 224
Effective length of database: 12,553,887
Effective search space: 2812070688
Effective search space used: 2812070688
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003183
(979 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003359462.1| PREDICTED: n-myc-interactor-like [Sus scrofa]. 371 e-103
Alignment gi|XP_003358072.1| PREDICTED: interferon-induced 35 kDa protein... 71 1e-12
>ref|XP_003359462.1| PREDICTED: n-myc-interactor-like [Sus scrofa].
Length = 309
Score = 371 bits (952), Expect = e-103
Identities = 197/246 (80%), Positives = 198/246 (80%)
Frame = +3
Query: 240 MATXXXXXXXXXXXXWPAEEVMKDEQNQKLIDELEKENIXXXXXXXXXXXXXXXXXXNSQ 419
MAT WPAEEVMKDEQNQKLIDELEKENI NSQ
Sbjct: 1 MATDEKEKKQDLKEEWPAEEVMKDEQNQKLIDELEKENIQLKEELQKLEAELQETTTNSQ 60
Query: 420 IHEDIPETKIKFTSLENPESDRQFSNISYSCQVSSKVPYELQKGQALITFEKEEVAQNVI 599
IHEDIPETKIKFTSLENPESDRQFSNISYSCQVSSKVPYELQKGQALITFEKEEVAQNVI
Sbjct: 61 IHEDIPETKIKFTSLENPESDRQFSNISYSCQVSSKVPYELQKGQALITFEKEEVAQNVI 120
Query: 600 RMESHHVQMQGVKVKVMAKPVSLKSGVRFQVHVEVSKMKINVTEIPDVLPESQMRDKLEL 779
RMESHHVQMQGVKVKVMAKPVSLKSGVRFQVHVEVSKMKINVTEIPD LPESQMRDKLEL
Sbjct: 121 RMESHHVQMQGVKVKVMAKPVSLKSGVRFQVHVEVSKMKINVTEIPDELPESQMRDKLEL 180
Query: 780 SFSKSRYGGGEMESVEYDRQAGERCRHICGSGVADRILKMKDYAPLKNENCHRVMVGSIM 959
SFSKSRYGGGE+ESVEYDRQA SGVADRILKMKDYA NENCHRVMV M
Sbjct: 181 SFSKSRYGGGEVESVEYDRQARSAVVTFVESGVADRILKMKDYALYINENCHRVMVAPFM 240
Query: 960 ETHFGK 977
ETH K
Sbjct: 241 ETHLEK 246
Score = 57.4 bits (137), Expect = 1e-08
Identities = 40/146 (27%), Positives = 70/146 (47%), Gaps = 10/146 (6%)
Frame = +3
Query: 417 QIHEDIPETKIKFTSL--ENPESDRQ------FSNISYSCQVSSKVPYELQKGQALITFE 572
Q+H ++ + KI T + E PES + FS Y V Y+ Q A++TF
Sbjct: 150 QVHVEVSKMKINVTEIPDELPESQMRDKLELSFSKSRYGGGEVESVEYDRQARSAVVTFV 209
Query: 573 KEEVAQNVIRMESHHVQMQGVKVKVMAKPVSLKSGVRFQVHVEVSKMKINVTEIPD--VL 746
+ VA +++M+ + + + +VM P +FQV VSK + ++ + D +
Sbjct: 210 ESGVADRILKMKDYALYINENCHRVMVAPFMETHLEKFQVFSGVSKKTVLLSGLEDLQIT 269
Query: 747 PESQMRDKLELSFSKSRYGGGEMESV 824
E + D + + F + + GGGE+E V
Sbjct: 270 DEETVEDFISIHFQREKNGGGEVEVV 295
>ref|XP_003358072.1| PREDICTED: interferon-induced 35 kDa protein-like [Sus scrofa].
Length = 284
Score = 70.9 bits (172), Expect = 1e-12
Identities = 44/140 (31%), Positives = 75/140 (53%), Gaps = 6/140 (4%)
Frame = +3
Query: 426 EDIPETKIKFTSLENPESDR----QFSNISYSCQVSSKVPYELQKGQALITFEKEEVAQN 593
E P K+ F E P R Q ++ S + ++ Y L G AL+TF+ VA+
Sbjct: 32 ESFPPDKVPFPMPEVPLVFRGHIQQGREMAKSVVSNLQICYPLPGGSALVTFDDPNVAKQ 91
Query: 594 VIRMESHHVQMQGVKVKVMAKPVSLKSGVRFQVHVEVSKMKINVTEIPD--VLPESQMRD 767
V++ + H + M+ +++V +P+ L QV ++S K+ V+ IP L E ++ D
Sbjct: 92 VLQQKEHTIDMEEFRLRVQVQPLELPMLTTIQVASQMSDKKVFVSGIPAGLKLSEEELLD 151
Query: 768 KLELSFSKSRYGGGEMESVE 827
KLE+ F K++ GGG++E+ E
Sbjct: 152 KLEIFFGKTKNGGGDVETRE 171
Score = 49.3 bits (116), Expect = 3e-06
Identities = 29/96 (30%), Positives = 48/96 (50%)
Frame = +3
Query: 537 ELQKGQALITFEKEEVAQNVIRMESHHVQMQGVKVKVMAKPVSLKSGVRFQVHVEVSKMK 716
EL +G ++ F K+EVAQ + + V + + + P + +V +
Sbjct: 171 ELLQGGVVLGFTKDEVAQQLCQKGQFSVPLGKQQFPLTVSPYVSGEIQKAEVRSQPVPQS 230
Query: 717 INVTEIPDVLPESQMRDKLELSFSKSRYGGGEMESV 824
+ V IPDVL +++D LE+ F K GGGE+E+V
Sbjct: 231 VLVLNIPDVLDGPELQDVLEIHFQKPTRGGGEVEAV 266
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 18,395,400
Number of extensions: 383530
Number of successful extensions: 1326
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1325
Number of HSP's successfully gapped: 4
Length of query: 326
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 227
Effective length of database: 8,879,129
Effective search space: 2015562283
Effective search space used: 2015562283
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003183
(979 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr15 383 e-103
>Sscrofa_Chr15
|| Length = 157681621
Score = 383 bits (193), Expect = e-103
Identities = 222/234 (94%), Gaps = 1/234 (0%)
Strand = Plus / Minus
Query: 2 attggagaca-caggtttggcattcgagcagtggctagattgaaaggcattatttgagta 60
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29039 attggagacaacaggtttggcattcgagcagtggctagattgaaaggcattatttgagta 28980
Query: 61 gtttacttctcttttaattcattctttcttacnnnnnnnnnnnaaagcatcaaattgttg 120
|||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 28979 gtttacttctcttttaattcattctttcttactttttttttttaaagcatcaaattgttg 28920
Query: 121 agcccgaggacacccacttgaaaaaggtacaaggtacttccgaccaggcagccccagcgc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28919 agcccgaggacacccacttgaaaaaggtacaaggtacttccgaccaggcagccccagcgc 28860
Query: 181 gcagccagggagtgttccggaagcgggtcgccgcgcttggccgcccgaggcggg 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28859 gcagccagggagtgttccggaagcgggtcgccgcgcttggccgcccgaggcggg 28806
Score = 383 bits (193), Expect = e-103
Identities = 222/234 (94%), Gaps = 1/234 (0%)
Strand = Plus / Plus
Query: 2 attggagaca-caggtttggcattcgagcagtggctagattgaaaggcattatttgagta 60
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157212148 attggagacaacaggtttggcattcgagcagtggctagattgaaaggcattatttgagta 157212207
Query: 61 gtttacttctcttttaattcattctttcttacnnnnnnnnnnnaaagcatcaaattgttg 120
|||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 157212208 gtttacttctcttttaattcattctttcttactttttttttttaaagcatcaaattgttg 157212267
Query: 121 agcccgaggacacccacttgaaaaaggtacaaggtacttccgaccaggcagccccagcgc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157212268 agcccgaggacacccacttgaaaaaggtacaaggtacttccgaccaggcagccccagcgc 157212327
Query: 181 gcagccagggagtgttccggaagcgggtcgccgcgcttggccgcccgaggcggg 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157212328 gcagccagggagtgttccggaagcgggtcgccgcgcttggccgcccgaggcggg 157212381
Score = 327 bits (165), Expect = 7e-87
Identities = 165/165 (100%)
Strand = Plus / Minus
Query: 418 agattcacgaggatattcctgaaacaaagataaagttcacatccttagagaatcctgaga 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17889 agattcacgaggatattcctgaaacaaagataaagttcacatccttagagaatcctgaga 17830
Query: 478 gtgacagacagttttcaaatatctcctattcatgtcaagtgagctcaaaagtcccttatg 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17829 gtgacagacagttttcaaatatctcctattcatgtcaagtgagctcaaaagtcccttatg 17770
Query: 538 agctacaaaaaggacaagcacttatcacctttgaaaaagaagaag 582
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17769 agctacaaaaaggacaagcacttatcacctttgaaaaagaagaag 17725
Score = 319 bits (161), Expect = 2e-84
Identities = 180/185 (97%), Gaps = 1/185 (0%)
Strand = Plus / Minus
Query: 686 ccaggttcacgtagaagtgtctaaaatgaagatcaacgttactgaaattcctgatgtact 745
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 14632 ccaggttcacgtagaagtgtctaaaatgaagatcaacgttactgaaattcctgatgaact 14573
Query: 746 gcctgaaagtcagatgagagataagctagaactgagtttttctaagtcccgctacggagg 805
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14572 gcctgaaagtcagatgagagataagctagaactgagtttttctaagtcccgctacggagg 14513
Query: 806 tggagaaatggaaagcgtggagtatgacaggcaggccggggagcgctgtcgtcacatttg 865
||||||| |||| |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 14512 tggagaagtggagagcgtggagtatgacaggcaggcc-cggagcgctgtcgtcacatttg 14454
Query: 866 tggaa 870
|||||
Sbjct: 14453 tggaa 14449
Score = 212 bits (107), Expect = 3e-52
Identities = 110/111 (99%)
Strand = Plus / Minus
Query: 581 agttgcccaaaacgtgatcagaatggagagccatcacgtgcagatgcagggtgtcaaggt 640
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14824 agttgcccaaaatgtgatcagaatggagagccatcacgtgcagatgcagggtgtcaaggt 14765
Query: 641 gaaggttatggccaagccggtttcattaaagtctggagtcagattccaggt 691
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14764 gaaggttatggccaagccggtttcattaaagtctggagtcagattccaggt 14714
Score = 186 bits (94), Expect = 2e-44
Identities = 97/98 (98%)
Strand = Plus / Minus
Query: 322 agaaattaattgatgaacttgaaaaggaaaatattcagttaacggaagagctccaaaaac 381
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 20265 agaaattaattgatgaacttgaaaaggaaaatattcagttaaaggaagagctccaaaaac 20206
Query: 382 ttgaagctgagttacaagagaccaccacaaactcccag 419
||||||||||||||||||||||||||||||||||||||
Sbjct: 20205 ttgaagctgagttacaagagaccaccacaaactcccag 20168
Score = 137 bits (69), Expect = 1e-29
Identities = 96/105 (91%)
Strand = Plus / Minus
Query: 875 agttgctgacagaattttgaaaatgaaagactatgctcctttaaaaaatgaaaactgcca 934
|||||||||||||||||||||||||||||||||||||| || | |||||||||||||||
Sbjct: 12037 agttgctgacagaattttgaaaatgaaagactatgctctttatataaatgaaaactgcca 11978
Query: 935 tagagttatggtgggttcaatcatggaaacacattttggaaaatt 979
|||||||||||||| | || |||||||||||||||| | ||||||
Sbjct: 11977 tagagttatggtggctccattcatggaaacacatttggaaaaatt 11933
Score = 133 bits (67), Expect = 2e-28
Identities = 83/91 (91%)
Strand = Plus / Minus
Query: 233 gggaatcatggcaacggatgaaaaggnnnnnnnncaagatcttaaggaggaatggccagc 292
|||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 21600 gggaatcatggcaacggatgaaaaggaaaaaaaacaagatcttaaggaggaatggccagc 21541
Query: 293 tgaagaagttatgaaagatgaacaaaaccag 323
|||||||||||||||||||||||||||||||
Sbjct: 21540 tgaagaagttatgaaagatgaacaaaaccag 21510
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 33,009,515
Number of extensions: 258
Number of successful extensions: 258
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 257
Number of HSP's successfully gapped: 10
Length of query: 979
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 958
Effective length of database: 2,808,413,156
Effective search space: 2690459803448
Effective search space used: 2690459803448
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)