Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003192
(1065 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001094777.1| estradiol 17-beta-dehydrogenase 12 [Bos taur... 469 e-132
Alignment gi|NP_001092341.1| inactive hydroxysteroid dehydrogenase-like p... 228 5e-60
Alignment gi|XP_002695214.1| PREDICTED: hypothetical protein [Bos taurus]. 192 4e-49
Alignment gi|XP_585231.3| PREDICTED: hypothetical protein [Bos taurus]. 192 4e-49
Alignment gi|NP_001069907.1| testosterone 17-beta-dehydrogenase 3 [Bos ta... 186 3e-47
Alignment gi|XP_002702202.1| PREDICTED: dehydrogenase/reductase SDR famil... 85 1e-16
Alignment gi|NP_001039627.1| dehydrogenase/reductase SDR family member 7 ... 84 2e-16
Alignment gi|NP_001030420.1| dehydrogenase/reductase SDR family member 7B... 82 6e-16
Alignment gi|NP_001039751.1| estradiol 17-beta-dehydrogenase 11 [Bos taur... 80 3e-15
Alignment gi|NP_777247.1| dehydrogenase/reductase SDR family member 4 [Bo... 80 3e-15
>ref|NP_001094777.1| estradiol 17-beta-dehydrogenase 12 [Bos taurus].
Length = 312
Score = 469 bits (1206), Expect = e-132
Identities = 234/272 (86%), Positives = 252/272 (92%)
Frame = +3
Query: 117 METALPAAGFLYWVGASTVAYLALRISCWFFTALRVWGLGHEAGVGPWLGEWAVVTGGTD 296
ME+ LPA GFLYWVG TVAYLALRISC+ FTA+RVWGLG+E+GVGP LGEWAVVTG TD
Sbjct: 1 MESFLPATGFLYWVGVGTVAYLALRISCFLFTAVRVWGLGNESGVGPRLGEWAVVTGSTD 60
Query: 297 GIGKSYAEELAKRGMKIVLISRSQDKLDQVSSEISEKFKVETKTIAVDFTSEDIYDKIKA 476
GIGKSYAE+LA+RGMKIVLISRSQDKL+QVSSEI EKFKVETKTIAVDFT EDIYDKIK
Sbjct: 61 GIGKSYAEKLAERGMKIVLISRSQDKLNQVSSEIREKFKVETKTIAVDFTLEDIYDKIKT 120
Query: 477 SLAGLNIGVLVNNVGMSYEYPEYFLDVPDLDNTIKKLITVNALSVCKMTRLVLPGMVERS 656
SLAGL IGVLVNNVGMSYEYPEYFLD+PDLDNTIKKLI+VN LSVCKMT+LVLPGMVERS
Sbjct: 121 SLAGLEIGVLVNNVGMSYEYPEYFLDIPDLDNTIKKLISVNVLSVCKMTQLVLPGMVERS 180
Query: 657 KGAILNISSASGMYPVPLLTIYSATKAFVDFFSQCLHEEYKSKGVIVQSVLPYYVATKLA 836
KG ILNISSA+G YPVPLLTIYSATKAFVDFFSQCLHEEYKSKG+ VQSVLP++VATKLA
Sbjct: 181 KGVILNISSATGRYPVPLLTIYSATKAFVDFFSQCLHEEYKSKGIFVQSVLPFFVATKLA 240
Query: 837 KIKRPTWDKPSPETFVKSAMKTIGVQSRTHGY 932
KI++PT DKPS E FVK A+KTIGVQSRT GY
Sbjct: 241 KIRKPTLDKPSSENFVKCAIKTIGVQSRTSGY 272
>ref|NP_001092341.1| inactive hydroxysteroid dehydrogenase-like protein 1 [Bos taurus].
Length = 330
Score = 228 bits (582), Expect = 5e-60
Identities = 125/271 (46%), Positives = 176/271 (64%), Gaps = 8/271 (2%)
Frame = +3
Query: 156 VGASTVAYLALRISCWFFTALRVW---GLGHEAGVGPWLGEWAVVTGGTDGIGKSYAEEL 326
VGA A ++ + C F++ +R+ L A + G WAVV+G TDGIG++YAEEL
Sbjct: 28 VGAWYTARKSITVVCDFYSLIRLHFIPRLVSRADLIKQYGRWAVVSGATDGIGRAYAEEL 87
Query: 327 AKRGMKIVLISRSQDKLDQVSSEISEKFKVETKTIAVDFTS-EDIYDKIKASLAGLNIGV 503
A RG+ IVLISRSQ+KL V+ +I++ +KVET I DF+S +IYD I+ +L +IG+
Sbjct: 88 ASRGLNIVLISRSQEKLQMVAKDIADTYKVETDIIVADFSSGREIYDMIREALQDRDIGI 147
Query: 504 LVNNVGMSYEYPEYFLDVPDLDNTIKKLITVNALSVCKMTRLVLPGMVERSKGAILNISS 683
LVNNVG+ Y YP+YF V + +T+ ++ VN + M +VLPGMVER KGAI+ ISS
Sbjct: 148 LVNNVGVFYPYPQYFTQVSE--DTLWDIVNVNIAAASLMVHIVLPGMVERKKGAIVTISS 205
Query: 684 ASGMYPVPLLTIYSATKAFVDFFSQCLHEEYKSKGVIVQSVLPYYVATKLAK----IKRP 851
S P P L +SA+KA++D FS+ L EY SKG+ VQS++P+YVAT +A + +
Sbjct: 206 GSCCKPTPQLAAFSASKAYLDHFSRALQYEYASKGIFVQSLIPFYVATNVATPGSFLHKC 265
Query: 852 TWDKPSPETFVKSAMKTIGVQSRTHGYRSIS 944
W PSP+ + A+ T+G+ RT GY S S
Sbjct: 266 PWLVPSPKVYAHHAVSTLGISKRTTGYWSHS 296
>ref|XP_002695214.1| PREDICTED: hypothetical protein [Bos taurus].
Length = 379
Score = 192 bits (488), Expect = 4e-49
Identities = 114/263 (43%), Positives = 153/263 (58%), Gaps = 5/263 (1%)
Frame = +3
Query: 156 VGASTVAYLALRISCWFFTALRVWGLGHEAGVGPWL---GEWAVVTGGTDGIGKSYAEEL 326
+GA T +L L + + + ++ L WL G WAVVTG T GIGK+YA EL
Sbjct: 75 LGAVTALFLLLWATWAVGSTVYIYLLPQARRSNHWLRAHGAWAVVTGATSGIGKAYAHEL 134
Query: 327 AKRGMKIVLISRSQDKLDQVSSEISEKFKVETKTIAVDFTSE-DIYDKIKASLAGLNIGV 503
A+RG+ +VLISR KL + EI + T+ I VDFT +IY+ I+A L GL +GV
Sbjct: 135 ARRGLNVVLISRDLSKLKHEAKEIEGLYGKRTRVIQVDFTGGLEIYETIEAGLKGLEVGV 194
Query: 504 LVNNVGMSYEYP-EYFLDVPDLDNTIKKLITVNALSVCKMTRLVLPGMVERSKGAILNIS 680
LVNNVG Y LD D ++ +I N +SV +MTR++LPGMV R KG I+NIS
Sbjct: 195 LVNNVGQKYTPRLSKLLDCEDTAKKLQDIINCNMVSVAQMTRILLPGMVSRGKGIIINIS 254
Query: 681 SASGMYPVPLLTIYSATKAFVDFFSQCLHEEYKSKGVIVQSVLPYYVATKLAKIKRPTWD 860
S + P P L +Y+ATKAFV FS + EY+SKGV VQ+V P+ V T + +
Sbjct: 255 SVADRRPYPYLAVYAATKAFVRSFSVAVGVEYRSKGVTVQTVSPFLVETNMTYPMKKGLL 314
Query: 861 KPSPETFVKSAMKTIGVQSRTHG 929
S E F + A+ T+G+ S T G
Sbjct: 315 VVSSEDFARQALDTLGLTSETTG 337
>ref|XP_585231.3| PREDICTED: hypothetical protein [Bos taurus].
Length = 367
Score = 192 bits (488), Expect = 4e-49
Identities = 114/263 (43%), Positives = 153/263 (58%), Gaps = 5/263 (1%)
Frame = +3
Query: 156 VGASTVAYLALRISCWFFTALRVWGLGHEAGVGPWL---GEWAVVTGGTDGIGKSYAEEL 326
+GA T +L L + + + ++ L WL G WAVVTG T GIGK+YA EL
Sbjct: 63 LGAVTALFLLLWATWAVGSTVYIYLLPQARRSNHWLRAHGAWAVVTGATSGIGKAYAHEL 122
Query: 327 AKRGMKIVLISRSQDKLDQVSSEISEKFKVETKTIAVDFTSE-DIYDKIKASLAGLNIGV 503
A+RG+ +VLISR KL + EI + T+ I VDFT +IY+ I+A L GL +GV
Sbjct: 123 ARRGLNVVLISRDLSKLKHEAKEIEGLYGKRTRVIQVDFTGGLEIYETIEAGLKGLEVGV 182
Query: 504 LVNNVGMSYEYP-EYFLDVPDLDNTIKKLITVNALSVCKMTRLVLPGMVERSKGAILNIS 680
LVNNVG Y LD D ++ +I N +SV +MTR++LPGMV R KG I+NIS
Sbjct: 183 LVNNVGQKYTPRLSKLLDCEDTAKKLQDIINCNMVSVAQMTRILLPGMVSRGKGIIINIS 242
Query: 681 SASGMYPVPLLTIYSATKAFVDFFSQCLHEEYKSKGVIVQSVLPYYVATKLAKIKRPTWD 860
S + P P L +Y+ATKAFV FS + EY+SKGV VQ+V P+ V T + +
Sbjct: 243 SVADRRPYPYLAVYAATKAFVRSFSVAVGVEYRSKGVTVQTVSPFLVETNMTYPMKKGLL 302
Query: 861 KPSPETFVKSAMKTIGVQSRTHG 929
S E F + A+ T+G+ S T G
Sbjct: 303 VVSSEDFARQALDTLGLTSETTG 325
>ref|NP_001069907.1| testosterone 17-beta-dehydrogenase 3 [Bos taurus].
Length = 310
Score = 186 bits (472), Expect = 3e-47
Identities = 106/257 (41%), Positives = 149/257 (57%), Gaps = 1/257 (0%)
Frame = +3
Query: 261 LGEWAVVTGGTDGIGKSYAEELAKRGMKIVLISRSQDKLDQVSSEISEKFKVETKTIAVD 440
+GEWAV+TG DGIGK+Y+ ELA++G +VLISR+ +KL +++EI K I D
Sbjct: 47 VGEWAVITGAGDGIGKAYSFELARQGFNVVLISRTLEKLQAIAAEIELTIGSTVKIIQAD 106
Query: 441 FTSEDIYDKIKASLAGLNIGVLVNNVGMSYE-YPEYFLDVPDLDNTIKKLITVNALSVCK 617
F +DIYD IK L GL IG+LVNNVGM P +FL+ D I+ LI N SV K
Sbjct: 107 FAKDDIYDYIKEKLKGLEIGILVNNVGMLPNLLPSHFLNTSD---DIQSLIHCNITSVVK 163
Query: 618 MTRLVLPGMVERSKGAILNISSASGMYPVPLLTIYSATKAFVDFFSQCLHEEYKSKGVIV 797
MT+L+L M R KG ILNISS ++P PL ++YSA+KAFV FS+ L EYK KG+I+
Sbjct: 164 MTQLILKHMESRQKGLILNISSGVALFPWPLYSMYSASKAFVCTFSKALQAEYKDKGIII 223
Query: 798 QSVLPYYVATKLAKIKRPTWDKPSPETFVKSAMKTIGVQSRTHGYRSISCGSVSAACLLA 977
Q + PY ++T + K + + FVK ++ + + CG ++ L
Sbjct: 224 QVLTPYAISTPMTKYLSTNMITKTADEFVKESLNYVTIGDEI-------CGCLTHEILAV 276
Query: 978 VFKIACIRHSYGSLSEK 1028
+ + Y S+ +K
Sbjct: 277 ILSLIPSWAFYSSVFQK 293
>ref|XP_002702202.1| PREDICTED: dehydrogenase/reductase SDR family member 7B-like [Bos
taurus].
Length = 325
Score = 85.1 bits (209), Expect = 1e-16
Identities = 56/197 (28%), Positives = 98/197 (49%), Gaps = 10/197 (5%)
Frame = +3
Query: 276 VVTGGTDGIGKSYAEELAKRGMKIVLISRSQDKLDQVSSEISEKFKVETKTIAVDFTSED 455
V+TG T G+G+ A G ++VL R+ + L+++S E++ E +T + D
Sbjct: 56 VITGATSGLGRECARVFHAAGARLVLCGRNAEALEELSQELAASRAPEVQTHKPCTVTFD 115
Query: 456 IYDKIKASLAGL---------NIGVLVNNVGMSYEYPEYFLDV-PDLDNTIKKLITVNAL 605
+ D ++AG ++ VL+NN G+SY +D PD+D K+++ N
Sbjct: 116 LADP--GAIAGAASEILQCFGHVDVLINNAGISYRGA--IVDTSPDVD---KRVMETNYF 168
Query: 606 SVCKMTRLVLPGMVERSKGAILNISSASGMYPVPLLTIYSATKAFVDFFSQCLHEEYKSK 785
+T+ +LP M+ R +G ++ ISS G +P + Y+A+K F CL E +
Sbjct: 169 GPVALTKALLPAMIRRRQGHVVAISSIQGKISLPFRSAYAASKHATQAFFDCLRAEVEQH 228
Query: 786 GVIVQSVLPYYVATKLA 836
+ V + P Y+ T L+
Sbjct: 229 DIEVTVISPGYIHTNLS 245
>ref|NP_001039627.1| dehydrogenase/reductase SDR family member 7 [Bos taurus].
Length = 339
Score = 84.0 bits (206), Expect = 2e-16
Identities = 61/194 (31%), Positives = 100/194 (51%), Gaps = 7/194 (3%)
Frame = +3
Query: 279 VTGGTDGIGKSYAEELAKRGMKIVLISRSQDKLDQVSSEISEKFKVETKTIAV------D 440
VTG + GIG+ A +L+K G+ +VL +R +L++V + E ++ K I + D
Sbjct: 55 VTGASSGIGEELAYQLSKLGVSLVLSARRMHELERVKRKCLENGNLKEKDILILPLDLTD 114
Query: 441 FTSEDIYDKIKASLAGLNIGVLVNNVGMSYEYPEYFLDVPDLDNTIKKLITVNALSVCKM 620
+S ++ K G I +LVNN G+S + L V + K+LI +N L +
Sbjct: 115 RSSHEMATKAVLQEFG-RIDILVNNGGVS----QRALCVDTSLDVFKELIELNYLGTVSL 169
Query: 621 TRLVLPGMVERSKGAILNISSASGMYPVPLLTIYSATK-AFVDFFSQCLHEEYKSKGVIV 797
T+ VLP M+ER +G I+ ++S G+ PL T Y A+K A FF+ E G+ +
Sbjct: 170 TKCVLPHMIERKQGKIVTVNSMVGIIAAPLSTGYCASKHALRGFFNTLRSELATYPGITI 229
Query: 798 QSVLPYYVATKLAK 839
++ P V + + K
Sbjct: 230 SNICPGPVQSNIVK 243
>ref|NP_001030420.1| dehydrogenase/reductase SDR family member 7B [Bos taurus].
Length = 325
Score = 82.4 bits (202), Expect = 6e-16
Identities = 55/197 (27%), Positives = 97/197 (49%), Gaps = 10/197 (5%)
Frame = +3
Query: 276 VVTGGTDGIGKSYAEELAKRGMKIVLISRSQDKLDQVSSEISEKFKVETKTIAVDFTSED 455
V+TG T G+G+ A G ++VL R+ + L+++S E++ +T + D
Sbjct: 56 VITGATSGLGRECARVFHAAGARLVLCGRNAEALEELSQELAASRAPGVQTHKPCTVTFD 115
Query: 456 IYDKIKASLAGL---------NIGVLVNNVGMSYEYPEYFLDV-PDLDNTIKKLITVNAL 605
+ D ++AG ++ VL+NN G+SY +D PD+D K+++ N
Sbjct: 116 LADP--GAIAGAASEILQCFGHVDVLINNAGISYRGA--IVDTSPDVD---KRVMETNYF 168
Query: 606 SVCKMTRLVLPGMVERSKGAILNISSASGMYPVPLLTIYSATKAFVDFFSQCLHEEYKSK 785
+T+ +LP M+ R +G ++ ISS G +P + Y+A+K F CL E +
Sbjct: 169 GPVALTKALLPAMIRRRQGHVVAISSIQGKISLPFRSAYAASKHATQAFFDCLRAEVEQH 228
Query: 786 GVIVQSVLPYYVATKLA 836
+ V + P Y+ T L+
Sbjct: 229 DIEVTVISPGYIHTNLS 245
>ref|NP_001039751.1| estradiol 17-beta-dehydrogenase 11 [Bos taurus].
Length = 316
Score = 80.1 bits (196), Expect = 3e-15
Identities = 61/199 (30%), Positives = 101/199 (50%), Gaps = 7/199 (3%)
Frame = +3
Query: 264 GEWAVVTGGTDGIGKSYAEELAKRGMKIVLISRSQDKLDQVSSEISEKFKVETKTIAVDF 443
GE ++TG GIG+ A E AK K+VL ++ L++ ++E ++ + T VD
Sbjct: 52 GEIVLITGAGHGIGRQTAYEFAKLKCKLVLWDINKHGLEETATE-CKRLGAKAHTFVVDC 110
Query: 444 TS-EDIYD---KIKASLAGLNIGVLVNNVGMSYEYPEYFLDVPDLDNTIKKLITVNALSV 611
++ EDIY K+KA + ++ +LVNN G+ Y + P ++ T + VN L+
Sbjct: 111 SNREDIYSSAKKVKAEVG--DVSILVNNAGVVYTSDLFATQDPQIEKTFE----VNILAH 164
Query: 612 CKMTRLVLPGMVERSKGAILNISSASGMYPVPLLTIYSATKAFVDFFSQCLHEE---YKS 782
T+ LP M++ + G I+ ++SA+G VP L Y ++K F + L EE K
Sbjct: 165 FWTTKAFLPEMMKNNHGHIVTVASAAGHTGVPFLLAYCSSKFAAVGFHKALTEELSALKR 224
Query: 783 KGVIVQSVLPYYVATKLAK 839
GV + P ++ T K
Sbjct: 225 TGVKTTCLCPNFINTGFIK 243
>ref|NP_777247.1| dehydrogenase/reductase SDR family member 4 [Bos taurus].
Length = 260
Score = 80.1 bits (196), Expect = 3e-15
Identities = 63/229 (27%), Positives = 113/229 (49%), Gaps = 4/229 (1%)
Frame = +3
Query: 273 AVVTGGTDGIGKSYAEELAKRGMKIVLISRSQDKLDQVSSEISEKFKVETKTIAVDFTSE 452
A+VT TDGIG + A LA+ G +V+ SR Q +D+ + + + T T+ +E
Sbjct: 17 ALVTASTDGIGFAIARRLAQDGAHVVVSSRKQQNVDRAVATLKGEGLSVTGTVCHVGKAE 76
Query: 453 DIYDKIKASLAGLNIGV--LVNNVGMSYEYPEYFLDVPDLDNTIKKLITVNALSVCKMTR 626
D +++ A+ L+ GV L++N +S + +DVP+ K++ VN + +T+
Sbjct: 77 D-RERLVATAVKLHGGVDILISNAAVSPFFGS-LMDVPE--EVWDKILDVNVKATALLTK 132
Query: 627 LVLPGMVERSKGAILNISSASGMYPVPLLTIYSATKAFVDFFSQCLHEEYKSKGVIVQSV 806
V+P M +R G+I+ +SS + P P L Y+ +K + ++ L E V V +
Sbjct: 133 AVVPEMAKRGGGSIVIVSSIAAYSPFPSLGPYNVSKTALLGLTKNLALELAESNVRVNCL 192
Query: 807 LPYYVATKLAKIKRPTWDKPSPETFVKSA--MKTIGVQSRTHGYRSISC 947
P + T +++ W+ P+ + +K+ +K IG G S C
Sbjct: 193 APGLIRTSFSRV---LWEDPARQESIKATFQIKRIGKPEECAGIVSFLC 238
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 40,206,520
Number of extensions: 1065562
Number of successful extensions: 4172
Number of sequences better than 1.0e-05: 37
Number of HSP's gapped: 4121
Number of HSP's successfully gapped: 37
Length of query: 355
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 252
Effective length of database: 14,273,310
Effective search space: 3596874120
Effective search space used: 3596874120
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003192
(1065 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_848504.1| PREDICTED: similar to steroid dehydrogenase hom... 471 e-133
Alignment gi|XP_533148.2| PREDICTED: similar to steroid dehydrogenase hom... 343 2e-94
Alignment gi|XP_536765.2| PREDICTED: similar to hydroxysteroid dehydrogen... 227 2e-59
Alignment gi|XP_848540.1| PREDICTED: similar to Estradiol 17-beta-dehydro... 179 4e-45
Alignment gi|XP_536670.2| PREDICTED: similar to CG7601-PA [Canis familiar... 85 1e-16
Alignment gi|XP_537465.2| PREDICTED: similar to Dehydrogenase/reductase S... 79 6e-15
Alignment gi|NP_001041699.1| dehydrogenase/reductase SDR family member 4 ... 76 6e-14
Alignment gi|XP_544970.2| PREDICTED: similar to dehydrogenase/reductase (... 74 3e-13
Alignment gi|XP_535646.2| PREDICTED: similar to alcohol dehydrogenase PAN... 72 9e-13
Alignment gi|XP_850000.1| PREDICTED: similar to hydroxysteroid (17-beta) ... 72 9e-13
>ref|XP_848504.1| PREDICTED: similar to steroid dehydrogenase homolog isoform 2
[Canis familiaris].
Length = 312
Score = 471 bits (1211), Expect = e-133
Identities = 238/293 (81%), Positives = 260/293 (88%), Gaps = 2/293 (0%)
Frame = +3
Query: 117 METALPAAGFLYWVGASTVAYLALRISCWFFTALRVWGLGHEAGVGPWLGEWAVVTGGTD 296
ME+ALPAAG LYWVGA TVAY+ALR+SC FTALR+WGL HEAGVGP LGEWAVVTG TD
Sbjct: 1 MESALPAAGLLYWVGAGTVAYVALRLSCSLFTALRLWGLSHEAGVGPQLGEWAVVTGSTD 60
Query: 297 GIGKSYAEELAKRGMKIVLISRSQDKLDQVSSEISEKFKVETKTIAVDFTSEDIYDKIKA 476
GIGKSYAEELAK GMK+VLISRSQDKL+QVSSEI EKFKVET+T+AVDF SEDIYDKIK
Sbjct: 61 GIGKSYAEELAKHGMKVVLISRSQDKLNQVSSEIREKFKVETRTVAVDFASEDIYDKIKT 120
Query: 477 SLAGLNIGVLVNNVGMSYEYPEYFLDVPDLDNTIKKLITVNALSVCKMTRLVLPGMVERS 656
SLAGL IGVLVNNVGMSYEYPEYFLDVPDLDNTIKKLI +N LSVCKMTRLVLPGMVERS
Sbjct: 121 SLAGLKIGVLVNNVGMSYEYPEYFLDVPDLDNTIKKLININVLSVCKMTRLVLPGMVERS 180
Query: 657 KGAILNISSASGMYPVPLLTIYSATKAFVDFFSQCLHEEYKSKGVIVQSVLPYYVATKLA 836
KGAILNISSASGM PVPLL IYSATKAFVDFFS+CLHEEY+SKG+ VQSVLPYYVATKL+
Sbjct: 181 KGAILNISSASGMAPVPLLAIYSATKAFVDFFSRCLHEEYRSKGIFVQSVLPYYVATKLS 240
Query: 837 KIKRPTWDKPSPETFVKSAMKTIGVQSRTHGY--RSISCGSVSAACLLAVFKI 989
KI++PT DKPS ET+VKSA++T+G+QSRT GY S+ +SA FKI
Sbjct: 241 KIRKPTLDKPSAETYVKSAIQTVGLQSRTTGYLIHSLMDSIISAMPTWLYFKI 293
>ref|XP_533148.2| PREDICTED: similar to steroid dehydrogenase homolog isoform 1
[Canis familiaris].
Length = 238
Score = 343 bits (880), Expect = 2e-94
Identities = 176/219 (80%), Positives = 194/219 (88%), Gaps = 2/219 (0%)
Frame = +3
Query: 339 MKIVLISRSQDKLDQVSSEISEKFKVETKTIAVDFTSEDIYDKIKASLAGLNIGVLVNNV 518
MK+VLISRSQDKL+QVSSEI EKFKVET+T+AVDF SEDIYDKIK SLAGL IGVLVNNV
Sbjct: 1 MKVVLISRSQDKLNQVSSEIREKFKVETRTVAVDFASEDIYDKIKTSLAGLKIGVLVNNV 60
Query: 519 GMSYEYPEYFLDVPDLDNTIKKLITVNALSVCKMTRLVLPGMVERSKGAILNISSASGMY 698
GMSYEYPEYFLDVPDLDNTIKKLI +N LSVCKMTRLVLPGMVERSKGAILNISSASGM
Sbjct: 61 GMSYEYPEYFLDVPDLDNTIKKLININVLSVCKMTRLVLPGMVERSKGAILNISSASGMA 120
Query: 699 PVPLLTIYSATKAFVDFFSQCLHEEYKSKGVIVQSVLPYYVATKLAKIKRPTWDKPSPET 878
PVPLL IYSATKAFVDFFS+CLHEEY+SKG+ VQSVLPYYVATKL+KI++PT DKPS ET
Sbjct: 121 PVPLLAIYSATKAFVDFFSRCLHEEYRSKGIFVQSVLPYYVATKLSKIRKPTLDKPSAET 180
Query: 879 FVKSAMKTIGVQSRTHGY--RSISCGSVSAACLLAVFKI 989
+VKSA++T+G+QSRT GY S+ +SA FKI
Sbjct: 181 YVKSAIQTVGLQSRTTGYLIHSLMDSIISAMPTWLYFKI 219
>ref|XP_536765.2| PREDICTED: similar to hydroxysteroid dehydrogenase like 1 [Canis
familiaris].
Length = 330
Score = 227 bits (578), Expect = 2e-59
Identities = 122/271 (45%), Positives = 175/271 (64%), Gaps = 8/271 (2%)
Frame = +3
Query: 156 VGASTVAYLALRISCWFFTALRVW---GLGHEAGVGPWLGEWAVVTGGTDGIGKSYAEEL 326
VGA A ++ + C F++ +R+ L A + G WAVV+G TDGIG++YAEEL
Sbjct: 28 VGAWYTARKSITVICDFYSLIRLHFIPRLVSRADLIKQYGRWAVVSGATDGIGRAYAEEL 87
Query: 327 AKRGMKIVLISRSQDKLDQVSSEISEKFKVETKTIAVDFTS-EDIYDKIKASLAGLNIGV 503
A RG+ I+LISR+QDKL V+ +I++ +KVET+ I DF++ +IYD I+ +L +IG+
Sbjct: 88 ASRGLSIILISRNQDKLQMVAKDIADTYKVETEVIVADFSNGREIYDPIREALKDKDIGI 147
Query: 504 LVNNVGMSYEYPEYFLDVPDLDNTIKKLITVNALSVCKMTRLVLPGMVERSKGAILNISS 683
LVNNVG+ Y YP+YF V + + + +I VN + M +VLPGMVER KGA++ ISS
Sbjct: 148 LVNNVGVFYPYPQYFTQVSE--DKLWDIINVNIAAASLMVHIVLPGMVERKKGAVVTISS 205
Query: 684 ASGMYPVPLLTIYSATKAFVDFFSQCLHEEYKSKGVIVQSVLPYYVATKLAK----IKRP 851
S P P L YSA+KA++D FS+ L EY SKG+ VQS++P+YVAT + + +
Sbjct: 206 GSCCKPTPQLAAYSASKAYLDHFSRALQYEYASKGIFVQSLIPFYVATNMTSPGSFLHKC 265
Query: 852 TWDKPSPETFVKSAMKTIGVQSRTHGYRSIS 944
W PSP+ + A+ T+G+ RT GY S S
Sbjct: 266 PWLVPSPKVYAHHAVSTLGISKRTTGYWSHS 296
>ref|XP_848540.1| PREDICTED: similar to Estradiol 17-beta-dehydrogenase 3
(17-beta-HSD 3) (Testicular 17-beta-hydroxysteroid
dehydrogenase) [Canis familiaris].
Length = 520
Score = 179 bits (454), Expect = 4e-45
Identities = 97/224 (43%), Positives = 138/224 (61%), Gaps = 1/224 (0%)
Frame = +3
Query: 261 LGEWAVVTGGTDGIGKSYAEELAKRGMKIVLISRSQDKLDQVSSEISEKFKVETKTIAVD 440
+G+WAV+TG DGIGK+Y+ ELA++G+ +VLISR+ KL ++EI K I D
Sbjct: 47 MGQWAVITGAGDGIGKAYSFELARQGLNVVLISRTLKKLQATAAEIECATGSSVKIIQAD 106
Query: 441 FTSEDIYDKIKASLAGLNIGVLVNNVGMSYEY-PEYFLDVPDLDNTIKKLITVNALSVCK 617
FT ++IY+ I L GL IG+L+NNVGM P +FLD D I+ +I N SV K
Sbjct: 107 FTKDNIYEYIGEKLKGLEIGILINNVGMLPNLLPSHFLDTAD---DIQSVIHCNITSVVK 163
Query: 618 MTRLVLPGMVERSKGAILNISSASGMYPVPLLTIYSATKAFVDFFSQCLHEEYKSKGVIV 797
MT+L+L M R KG ILNISS ++P PL ++YSA+KAFV FS+ L EYK KG+I+
Sbjct: 164 MTQLILKHMESRQKGLILNISSGVALFPWPLYSMYSASKAFVCTFSKALQAEYKRKGIII 223
Query: 798 QSVLPYYVATKLAKIKRPTWDKPSPETFVKSAMKTIGVQSRTHG 929
Q + PY ++T + + + + FVK ++ + + T G
Sbjct: 224 QVLTPYAISTPMTRYLNTNMITKTADEFVKESLNYVTIGDETCG 267
>ref|XP_536670.2| PREDICTED: similar to CG7601-PA [Canis familiaris].
Length = 325
Score = 85.1 bits (209), Expect = 1e-16
Identities = 61/194 (31%), Positives = 95/194 (48%), Gaps = 7/194 (3%)
Frame = +3
Query: 276 VVTGGTDGIGKSYAEELAKRGMKIVLISRSQDKLDQVSSEI--SEKFKVET-KTIAVDFT 446
V+TG T G+G+ A G K+VL R+Q L++++ E+ S KV+T K V F
Sbjct: 56 VITGATSGLGRECARVFYTAGAKLVLCGRNQKALEELTKELTASPATKVQTHKPYMVTFD 115
Query: 447 SEDIYDKIKASLAGLN----IGVLVNNVGMSYEYPEYFLDVPDLDNTIKKLITVNALSVC 614
D I A+ L + VL+NN G+SY V + KK++ N
Sbjct: 116 LADPGAIIAATAEILQCFGYVDVLINNAGISYRGAI----VDTTTDVDKKVMETNYFGPV 171
Query: 615 KMTRLVLPGMVERSKGAILNISSASGMYPVPLLTIYSATKAFVDFFSQCLHEEYKSKGVI 794
+T+ +LP M++R +G I+ ISS G +P + Y+A+K F CL E + +
Sbjct: 172 ALTKALLPSMIKRRQGHIVVISSIQGKISIPFRSAYAASKHATQAFFDCLRAEMEQYEIE 231
Query: 795 VQSVLPYYVATKLA 836
V + P Y+ T L+
Sbjct: 232 VTVISPGYIHTNLS 245
>ref|XP_537465.2| PREDICTED: similar to Dehydrogenase/reductase SDR family member 7
precursor (Retinal short-chain dehydrogenase/reductase
4) (retSDR4) [Canis familiaris].
Length = 437
Score = 79.3 bits (194), Expect = 6e-15
Identities = 60/193 (31%), Positives = 98/193 (50%), Gaps = 6/193 (3%)
Frame = +3
Query: 279 VTGGTDGIGKSYAEELAKRGMKIVLISRSQDKLDQVSSEISEKFKVETKTIAV---DFTS 449
VTG + GIG+ +L+K G+ +VL +R +L++V E ++ K I V D T
Sbjct: 153 VTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKEKDIFVLPLDLTD 212
Query: 450 EDIYDKI-KASLAGLN-IGVLVNNVGMSYEYPEYFLDVPDLDNTIKKLITVNALSVCKMT 623
++ KA L I +LVNN G S + L V + K+L+ +N L +T
Sbjct: 213 RSSHEAATKAVLQEFGKIDILVNNGGQS----QRSLCVDTNLDVFKELMELNYLGTVSLT 268
Query: 624 RLVLPGMVERSKGAILNISSASGMYPVPLLTIYSATKAFVDFFSQCLHEEY-KSKGVIVQ 800
VLP M+ER +G I+ ++S G+ PL + Y A+K + F CL E + G+++
Sbjct: 269 MCVLPHMIERKQGKIVTVNSLLGIISAPLSSGYCASKHALRGFFNCLRVELAEYPGIVIS 328
Query: 801 SVLPYYVATKLAK 839
++ P V + + K
Sbjct: 329 NICPGPVQSNIVK 341
>ref|NP_001041699.1| dehydrogenase/reductase SDR family member 4 [Canis lupus
familiaris].
Length = 255
Score = 75.9 bits (185), Expect = 6e-14
Identities = 61/241 (25%), Positives = 114/241 (47%), Gaps = 3/241 (1%)
Frame = +3
Query: 255 PWLGEWAVVTGGTDGIGKSYAEELAKRGMKIVLISRSQDKLDQVSSEISEKFKVETKTIA 434
P + A+VT TDGIG + A LA+ G +V+ SR Q +D+ + + + T T+
Sbjct: 6 PLANKVALVTASTDGIGFAIARRLARDGAHVVVSSRKQHNVDRAVAALQGEGLSVTGTVC 65
Query: 435 VDFTSEDIYDKIKASLAGLN--IGVLVNNVGMSYEYPEYFLDVPDLDNTI-KKLITVNAL 605
+ED +++ A+ L+ I +L++N ++ +F ++ D+ + K++ +N
Sbjct: 66 HVGKAED-RERLVATAVNLHGGIDILISNAAVN----PFFGNLMDVTEEVWDKILDINVK 120
Query: 606 SVCKMTRLVLPGMVERSKGAILNISSASGMYPVPLLTIYSATKAFVDFFSQCLHEEYKSK 785
+ MT+ V+P M +R G+++ ++S P P L Y+ +K + ++ L E +
Sbjct: 121 ATALMTKAVVPEMEKRGGGSVVIVASIGAYLPFPGLGPYNVSKTALLGLTKNLARELDQR 180
Query: 786 GVIVQSVLPYYVATKLAKIKRPTWDKPSPETFVKSAMKTIGVQSRTHGYRSISCGSVSAA 965
+ V + P + T +K+ W + E +K M Q R G G VS
Sbjct: 181 NIRVNCLAPGLIKTSFSKV---LWMDKAREESIKKVM-----QIRRMGKPDDCAGIVSFL 232
Query: 966 C 968
C
Sbjct: 233 C 233
>ref|XP_544970.2| PREDICTED: similar to dehydrogenase/reductase (SDR family) member 8
[Canis familiaris].
Length = 300
Score = 73.6 bits (179), Expect = 3e-13
Identities = 58/199 (29%), Positives = 98/199 (49%), Gaps = 7/199 (3%)
Frame = +3
Query: 264 GEWAVVTGGTDGIGKSYAEELAKRGMKIVLISRSQDKLDQVSSEISEKFKVETKTIAVDF 443
GE ++TG GIG+ A E AK K+VL ++ ++ ++E + + VD
Sbjct: 36 GEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGIEDTAAE-CRRLGAKVHAFVVDC 94
Query: 444 TS-EDIY---DKIKASLAGLNIGVLVNNVGMSYEYPEYFLDVPDLDNTIKKLITVNALSV 611
++ EDIY K+KA + ++ +LVNN G+ Y + P ++ T + VN L+
Sbjct: 95 SNREDIYGSATKVKAEVG--DVSILVNNAGVVYTSDLFATQDPQIEKTFE----VNVLAH 148
Query: 612 CKMTRLVLPGMVERSKGAILNISSASGMYPVPLLTIYSATKAFVDFFSQCLHEE---YKS 782
T+ LP M++ + G I+ ++SA+G VP L Y ++K F + L EE +
Sbjct: 149 FWTTKAFLPVMMKNNHGHIVTVASAAGHTGVPFLLAYCSSKFAAVGFHKALTEELAALER 208
Query: 783 KGVIVQSVLPYYVATKLAK 839
GV + P ++ T K
Sbjct: 209 TGVKTTCLCPNFINTGFIK 227
>ref|XP_535646.2| PREDICTED: similar to alcohol dehydrogenase PAN1B-like isoform 1
[Canis familiaris].
Length = 271
Score = 72.0 bits (175), Expect = 9e-13
Identities = 57/197 (28%), Positives = 95/197 (48%), Gaps = 5/197 (2%)
Frame = +3
Query: 264 GEWAVVTGGTDGIGKSYAEELAKRGMKIVLISRSQDKLDQVSSEISEKFKVETKTIAVDF 443
GE ++TG GIG+ A E AK+ ++VL ++ +++ ++E K T VD
Sbjct: 36 GEIVLITGAGHGIGRWTAYEFAKQKSRLVLWDINKHGVEETAAE-CRKLGATVHTFVVDC 94
Query: 444 -TSEDIYDKIKASLAGL-NIGVLVNNVGMSYEYPEYFLDVPDLDNTIKKLITVNALSVCK 617
EDIY+ +K + ++ +LVNN G YP L D I K +N L
Sbjct: 95 GNREDIYNSVKQVKKEVGDVTILVNNAGT--VYPADLLSTK--DEEITKTFEINILGHFW 150
Query: 618 MTRLVLPGMVERSKGAILNISSASGMYPVPLLTIYSATKAFVDFFSQCLHEEYKSKGVI- 794
+T+ +LP M++R+ G I+ ++S G +P L Y ++K F + L E ++ G+
Sbjct: 151 ITKALLPSMIKRNHGHIVTVASVCGHGVIPYLIPYCSSKFAAVGFHRALTLELQTLGITG 210
Query: 795 --VQSVLPYYVATKLAK 839
+ P +V T K
Sbjct: 211 IKTSCLCPVFVNTGFTK 227
>ref|XP_850000.1| PREDICTED: similar to hydroxysteroid (17-beta) dehydrogenase 13
isoform 2 [Canis familiaris].
Length = 300
Score = 72.0 bits (175), Expect = 9e-13
Identities = 57/197 (28%), Positives = 95/197 (48%), Gaps = 5/197 (2%)
Frame = +3
Query: 264 GEWAVVTGGTDGIGKSYAEELAKRGMKIVLISRSQDKLDQVSSEISEKFKVETKTIAVDF 443
GE ++TG GIG+ A E AK+ ++VL ++ +++ ++E K T VD
Sbjct: 36 GEIVLITGAGHGIGRWTAYEFAKQKSRLVLWDINKHGVEETAAE-CRKLGATVHTFVVDC 94
Query: 444 -TSEDIYDKIKASLAGL-NIGVLVNNVGMSYEYPEYFLDVPDLDNTIKKLITVNALSVCK 617
EDIY+ +K + ++ +LVNN G YP L D I K +N L
Sbjct: 95 GNREDIYNSVKQVKKEVGDVTILVNNAGT--VYPADLLSTK--DEEITKTFEINILGHFW 150
Query: 618 MTRLVLPGMVERSKGAILNISSASGMYPVPLLTIYSATKAFVDFFSQCLHEEYKSKGVI- 794
+T+ +LP M++R+ G I+ ++S G +P L Y ++K F + L E ++ G+
Sbjct: 151 ITKALLPSMIKRNHGHIVTVASVCGHGVIPYLIPYCSSKFAAVGFHRALTLELQTLGITG 210
Query: 795 --VQSVLPYYVATKLAK 839
+ P +V T K
Sbjct: 211 IKTSCLCPVFVNTGFTK 227
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 41,830,191
Number of extensions: 1091135
Number of successful extensions: 4358
Number of sequences better than 1.0e-05: 45
Number of HSP's gapped: 4331
Number of HSP's successfully gapped: 45
Length of query: 355
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 251
Effective length of database: 15,407,560
Effective search space: 3867297560
Effective search space used: 3867297560
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003192
(1065 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_057226.1| estradiol 17-beta-dehydrogenase 12 [Homo sapien... 471 e-133
Alignment gi|NP_113651.4| inactive hydroxysteroid dehydrogenase-like prot... 223 3e-58
Alignment gi|NP_000188.1| testosterone 17-beta-dehydrogenase 3 [Homo sapi... 197 2e-50
Alignment gi|NP_001139523.1| inactive hydroxysteroid dehydrogenase-like p... 153 3e-37
Alignment gi|NP_056325.2| dehydrogenase/reductase SDR family member 7B [H... 83 5e-16
Alignment gi|NP_057113.1| dehydrogenase/reductase SDR family member 7 pre... 82 8e-16
Alignment gi|NP_057329.2| estradiol 17-beta-dehydrogenase 11 [Homo sapien... 75 8e-14
Alignment gi|NP_002026.1| 3-ketodihydrosphingosine reductase precursor [H... 75 8e-14
Alignment gi|NP_066284.2| dehydrogenase/reductase SDR family member 4 [Ho... 71 2e-12
Alignment gi|NP_001193670.1| corticosteroid 11-beta-dehydrogenase isozyme... 70 3e-12
>ref|NP_057226.1| estradiol 17-beta-dehydrogenase 12 [Homo sapiens].
Length = 312
Score = 471 bits (1212), Expect = e-133
Identities = 234/272 (86%), Positives = 252/272 (92%)
Frame = +3
Query: 117 METALPAAGFLYWVGASTVAYLALRISCWFFTALRVWGLGHEAGVGPWLGEWAVVTGGTD 296
ME+ALPAAGFLYWVGA TVAYLALRIS FTALRVWG+G+EAGVGP LGEWAVVTG TD
Sbjct: 1 MESALPAAGFLYWVGAGTVAYLALRISYSLFTALRVWGVGNEAGVGPGLGEWAVVTGSTD 60
Query: 297 GIGKSYAEELAKRGMKIVLISRSQDKLDQVSSEISEKFKVETKTIAVDFTSEDIYDKIKA 476
GIGKSYAEELAK GMK+VLISRS+DKLDQVSSEI EKFKVET+TIAVDF SEDIYDKIK
Sbjct: 61 GIGKSYAEELAKHGMKVVLISRSKDKLDQVSSEIKEKFKVETRTIAVDFASEDIYDKIKT 120
Query: 477 SLAGLNIGVLVNNVGMSYEYPEYFLDVPDLDNTIKKLITVNALSVCKMTRLVLPGMVERS 656
LAGL IG+LVNNVGMSYEYPEYFLDVPDLDN IKK+I +N LSVCKMT+LVLPGMVERS
Sbjct: 121 GLAGLEIGILVNNVGMSYEYPEYFLDVPDLDNVIKKMININILSVCKMTQLVLPGMVERS 180
Query: 657 KGAILNISSASGMYPVPLLTIYSATKAFVDFFSQCLHEEYKSKGVIVQSVLPYYVATKLA 836
KGAILNISS SGM PVPLLTIYSATK FVDFFSQCLHEEY+SKGV VQSVLPY+VATKLA
Sbjct: 181 KGAILNISSGSGMLPVPLLTIYSATKTFVDFFSQCLHEEYRSKGVFVQSVLPYFVATKLA 240
Query: 837 KIKRPTWDKPSPETFVKSAMKTIGVQSRTHGY 932
KI++PT DKPSPETFVKSA+KT+G+QSRT+GY
Sbjct: 241 KIRKPTLDKPSPETFVKSAIKTVGLQSRTNGY 272
>ref|NP_113651.4| inactive hydroxysteroid dehydrogenase-like protein 1 isoform a
[Homo sapiens].
Length = 330
Score = 223 bits (567), Expect = 3e-58
Identities = 121/271 (44%), Positives = 175/271 (64%), Gaps = 8/271 (2%)
Frame = +3
Query: 156 VGASTVAYLALRISCWFFTALRVW---GLGHEAGVGPWLGEWAVVTGGTDGIGKSYAEEL 326
VGA A ++ + C F++ +R+ LG A + G WAVV+G TDGIGK+YAEEL
Sbjct: 28 VGAWYTARKSITVICDFYSLIRLHFIPRLGSRADLIKQYGRWAVVSGATDGIGKAYAEEL 87
Query: 327 AKRGMKIVLISRSQDKLDQVSSEISEKFKVETKTIAVDFTS-EDIYDKIKASLAGLNIGV 503
A RG+ I+LISR+++KL V+ +I++ +KVET I DF+S +IY I+ +L ++G+
Sbjct: 88 ASRGLNIILISRNEEKLQVVAKDIADTYKVETDIIVADFSSGREIYLPIREALKDKDVGI 147
Query: 504 LVNNVGMSYEYPEYFLDVPDLDNTIKKLITVNALSVCKMTRLVLPGMVERSKGAILNISS 683
LVNNVG+ Y YP+YF + + + + +I VN + M +VLPGMVER KGAI+ ISS
Sbjct: 148 LVNNVGVFYPYPQYFTQLSE--DKLWDIINVNIAAASLMVHVVLPGMVERKKGAIVTISS 205
Query: 684 ASGMYPVPLLTIYSATKAFVDFFSQCLHEEYKSKGVIVQSVLPYYVATKLAK----IKRP 851
S P P L +SA+KA++D FS+ L EY SKG+ VQS++P+YVAT + + R
Sbjct: 206 GSCCKPTPQLAAFSASKAYLDHFSRALQYEYASKGIFVQSLIPFYVATSMTAPSNFLHRC 265
Query: 852 TWDKPSPETFVKSAMKTIGVQSRTHGYRSIS 944
+W PSP+ + A+ T+G+ RT GY S S
Sbjct: 266 SWLVPSPKVYAHHAVSTLGISKRTTGYWSHS 296
>ref|NP_000188.1| testosterone 17-beta-dehydrogenase 3 [Homo sapiens].
Length = 310
Score = 197 bits (500), Expect = 2e-50
Identities = 107/224 (47%), Positives = 145/224 (64%), Gaps = 1/224 (0%)
Frame = +3
Query: 261 LGEWAVVTGGTDGIGKSYAEELAKRGMKIVLISRSQDKLDQVSSEISEKFKVETKTIAVD 440
+G+WAV+TG DGIGK+Y+ ELAKRG+ +VLISR+ +KL+ +++EI K I D
Sbjct: 47 MGQWAVITGAGDGIGKAYSFELAKRGLNVVLISRTLEKLEAIATEIERTTGRSVKIIQAD 106
Query: 441 FTSEDIYDKIKASLAGLNIGVLVNNVGMSYE-YPEYFLDVPDLDNTIKKLITVNALSVCK 617
FT +DIY+ IK LAGL IG+LVNNVGM P +FL+ PD I+ LI N SV K
Sbjct: 107 FTKDDIYEHIKEKLAGLEIGILVNNVGMLPNLLPSHFLNAPD---EIQSLIHCNITSVVK 163
Query: 618 MTRLVLPGMVERSKGAILNISSASGMYPVPLLTIYSATKAFVDFFSQCLHEEYKSKGVIV 797
MT+L+L M R KG ILNISS ++P PL ++YSA+KAFV FS+ L EEYK+K VI+
Sbjct: 164 MTQLILKHMESRQKGLILNISSGIALFPWPLYSMYSASKAFVCAFSKALQEEYKAKEVII 223
Query: 798 QSVLPYYVATKLAKIKRPTWDKPSPETFVKSAMKTIGVQSRTHG 929
Q + PY V+T + K + + FVK ++ + + T G
Sbjct: 224 QVLTPYAVSTAMTKYLNTNVITKTADEFVKESLNYVTIGGETCG 267
>ref|NP_001139523.1| inactive hydroxysteroid dehydrogenase-like protein 1 isoform b
[Homo sapiens].
Length = 275
Score = 153 bits (386), Expect = 3e-37
Identities = 98/270 (36%), Positives = 142/270 (52%), Gaps = 7/270 (2%)
Frame = +3
Query: 156 VGASTVAYLALRISCWFFTALRVW---GLGHEAGVGPWLGEWAVVTGGTDGIGKSYAEEL 326
VGA A ++ + C F++ +R+ LG A + G WAVV+G TDGIGK+YAEEL
Sbjct: 28 VGAWYTARKSITVICDFYSLIRLHFIPRLGSRADLIKQYGRWAVVSGATDGIGKAYAEEL 87
Query: 327 AKRGMKIVLISRSQDKLDQVSSEISEKFKVETKTIAVDFTSEDIYDKIKASLAGLNIGVL 506
A RG+ I+LISR+++KL Q +++SE + ++D I ++A ++
Sbjct: 88 ASRGLNIILISRNEEKL-QYFTQLSE---------------DKLWDIINVNIAAASL--- 128
Query: 507 VNNVGMSYEYPEYFLDVPDLDNTIKKLITVNALSVCKMTRLVLPGMVERSKGAILNISSA 686
M +VLPGMVER KGAI+ ISS
Sbjct: 129 -------------------------------------MVHVVLPGMVERKKGAIVTISSG 151
Query: 687 SGMYPVPLLTIYSATKAFVDFFSQCLHEEYKSKGVIVQSVLPYYVATKLAK----IKRPT 854
S P P L +SA+KA++D FS+ L EY SKG+ VQS++P+YVAT + + R +
Sbjct: 152 SCCKPTPQLAAFSASKAYLDHFSRALQYEYASKGIFVQSLIPFYVATSMTAPSNFLHRCS 211
Query: 855 WDKPSPETFVKSAMKTIGVQSRTHGYRSIS 944
W PSP+ + A+ T+G+ RT GY S S
Sbjct: 212 WLVPSPKVYAHHAVSTLGISKRTTGYWSHS 241
>ref|NP_056325.2| dehydrogenase/reductase SDR family member 7B [Homo sapiens].
Length = 325
Score = 82.8 bits (203), Expect = 5e-16
Identities = 57/194 (29%), Positives = 96/194 (49%), Gaps = 7/194 (3%)
Frame = +3
Query: 276 VVTGGTDGIGKSYAEELAKRGMKIVLISRSQDKLDQVSSEISEKFKVETKTIAVDFTSED 455
V+TG T G+GK A+ G K+VL R+ L+++ E++ + +T + D
Sbjct: 56 VITGATSGLGKECAKVFYAAGAKLVLCGRNGGALEELIRELTASHATKVQTHKPYLVTFD 115
Query: 456 IYDK--IKASLAGL-----NIGVLVNNVGMSYEYPEYFLDVPDLDNTIKKLITVNALSVC 614
+ D I A+ A + + +LVNN G+SY V D+D K+++ N
Sbjct: 116 LTDSGAIVAAAAEILQCFGYVDILVNNAGISYRGTIMDTTV-DVD---KRVMETNYFGPV 171
Query: 615 KMTRLVLPGMVERSKGAILNISSASGMYPVPLLTIYSATKAFVDFFSQCLHEEYKSKGVI 794
+T+ +LP M++R +G I+ ISS G +P + Y+A+K F CL E + +
Sbjct: 172 ALTKALLPSMIKRRQGHIVAISSIQGKMSIPFRSAYAASKHATQAFFDCLRAEMEQYEIE 231
Query: 795 VQSVLPYYVATKLA 836
V + P Y+ T L+
Sbjct: 232 VTVISPGYIHTNLS 245
>ref|NP_057113.1| dehydrogenase/reductase SDR family member 7 precursor [Homo
sapiens].
Length = 339
Score = 82.0 bits (201), Expect = 8e-16
Identities = 64/193 (33%), Positives = 100/193 (51%), Gaps = 6/193 (3%)
Frame = +3
Query: 279 VTGGTDGIGKSYAEELAKRGMKIVLISRSQDKLDQVSSEISEKFKVETKTIAV---DFTS 449
VTG + GIG+ A +L+K G+ +VL +R +L++V E ++ K I V D T
Sbjct: 55 VTGASSGIGEELAYQLSKLGVSLVLSARRVHELERVKRRCLENGNLKEKDILVLPLDLTD 114
Query: 450 EDIYDKI-KASLAGLN-IGVLVNNVGMSYEYPEYFLDVPDLDNTIKKLITVNALSVCKMT 623
++ KA L I +LVNN GMS + L + + +KLI +N L +T
Sbjct: 115 TGSHEAATKAVLQEFGRIDILVNNGGMS----QRSLCMDTSLDVYRKLIELNYLGTVSLT 170
Query: 624 RLVLPGMVERSKGAILNISSASGMYPVPLLTIYSATK-AFVDFFSQCLHEEYKSKGVIVQ 800
+ VLP M+ER +G I+ ++S G+ VPL Y A+K A FF+ E G+IV
Sbjct: 171 KCVLPHMIERKQGKIVTVNSILGIISVPLSIGYCASKHALRGFFNGLRTELATYPGIIVS 230
Query: 801 SVLPYYVATKLAK 839
++ P V + + +
Sbjct: 231 NICPGPVQSNIVE 243
>ref|NP_057329.2| estradiol 17-beta-dehydrogenase 11 [Homo sapiens].
Length = 300
Score = 75.5 bits (184), Expect = 8e-14
Identities = 59/199 (29%), Positives = 99/199 (49%), Gaps = 7/199 (3%)
Frame = +3
Query: 264 GEWAVVTGGTDGIGKSYAEELAKRGMKIVLISRSQDKLDQVSSEISEKFKVETKTIAVDF 443
GE ++TG GIG+ A E AK K+VL ++ L++ +++ + + T VD
Sbjct: 36 GEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAK-CKGLGAKVHTFVVDC 94
Query: 444 TS-EDIYD---KIKASLAGLNIGVLVNNVGMSYEYPEYFLDVPDLDNTIKKLITVNALSV 611
++ EDIY K+KA + ++ +LVNN G+ Y + P ++ T + VN L+
Sbjct: 95 SNREDIYSSAKKVKAEIG--DVSILVNNAGVVYTSDLFATQDPQIEKTFE----VNVLAH 148
Query: 612 CKMTRLVLPGMVERSKGAILNISSASGMYPVPLLTIYSATKAFVDFFSQCLHEEYKS--- 782
T+ LP M + + G I+ ++SA+G VP L Y ++K F + L +E +
Sbjct: 149 FWTTKAFLPAMTKNNHGHIVTVASAAGHVSVPFLLAYCSSKFAAVGFHKTLTDELAALQI 208
Query: 783 KGVIVQSVLPYYVATKLAK 839
GV + P +V T K
Sbjct: 209 TGVKTTCLCPNFVNTGFIK 227
>ref|NP_002026.1| 3-ketodihydrosphingosine reductase precursor [Homo sapiens].
Length = 332
Score = 75.5 bits (184), Expect = 8e-14
Identities = 62/189 (32%), Positives = 95/189 (50%), Gaps = 6/189 (3%)
Frame = +3
Query: 264 GEWAVVTGGTDGIGKSYAEELAKRGMKIVLISRSQDKLDQVSSEI---SEKFKVETKTIA 434
G VVTGG+ GIGK A E K+G I L++R++DKL Q EI S K I+
Sbjct: 32 GAHVVVTGGSSGIGKCIAIECYKQGAFITLVARNEDKLLQAKKEIEMHSINDKQVVLCIS 91
Query: 435 VDFTSE--DIYDKIKASLAGLN-IGVLVNNVGMSYEYPEYFLDVPDLDNTIKKLITVNAL 605
VD + + + + IK + L + +LVN GM+ L+V +T ++L+++N L
Sbjct: 92 VDVSQDYNQVENVIKQAQEKLGPVDMLVNCAGMAVSGKFEDLEV----STFERLMSINYL 147
Query: 606 SVCKMTRLVLPGMVERSKGAILNISSASGMYPVPLLTIYSATKAFVDFFSQCLHEEYKSK 785
+R V+ M ER G I+ +SS +G + T YSA+K + ++ L E K
Sbjct: 148 GSVYPSRAVITTMKERRVGRIVFVSSQAGQLGLFGFTAYSASKFAIRGLAEALQMEVKPY 207
Query: 786 GVIVQSVLP 812
V + P
Sbjct: 208 NVYITVAYP 216
>ref|NP_066284.2| dehydrogenase/reductase SDR family member 4 [Homo sapiens].
Length = 278
Score = 70.9 bits (172), Expect = 2e-12
Identities = 59/235 (25%), Positives = 109/235 (46%), Gaps = 8/235 (3%)
Frame = +3
Query: 219 RVWGLGHEAGVG-----PWLGEWAVVTGGTDGIGKSYAEELAKRGMKIVLISRSQDKLDQ 383
R W A G P + A+VT TDGIG + A LA+ G +V+ SR Q +DQ
Sbjct: 12 RAWNSVRMASSGMTRRDPLANKVALVTASTDGIGFAIARRLAQDGAHVVVSSRKQQNVDQ 71
Query: 384 VSSEISEKFKVETKTIAVDFTSEDIYDKIKASLAGLN--IGVLVNNVGMSYEYPEYFLDV 557
+ + + T T+ +ED +++ A+ L+ I +LV+N ++ +F +
Sbjct: 72 AVATLQGEGLSVTGTVCHVGKAED-RERLVATAVKLHGGIDILVSNAAVN----PFFGSI 126
Query: 558 PDLDNTI-KKLITVNALSVCKMTRLVLPGMVERSKGAILNISSASGMYPVPLLTIYSATK 734
D+ + K + +N + MT+ V+P M +R G+++ +SS + P P + Y+ +K
Sbjct: 127 MDVTEEVWDKTLDINVKAPALMTKAVVPEMEKRGGGSVVIVSSIAAFSPSPGFSPYNVSK 186
Query: 735 AFVDFFSQCLHEEYKSKGVIVQSVLPYYVATKLAKIKRPTWDKPSPETFVKSAMK 899
+ ++ L E + + V + P + T + R W E +K ++
Sbjct: 187 TALLGLTKTLAIELAPRNIRVNCLAPGLIKTSFS---RMLWMDKEKEESMKETLR 238
>ref|NP_001193670.1| corticosteroid 11-beta-dehydrogenase isozyme 1 [Homo sapiens].
Length = 292
Score = 70.1 bits (170), Expect = 3e-12
Identities = 55/188 (29%), Positives = 94/188 (50%), Gaps = 6/188 (3%)
Frame = +3
Query: 264 GEWAVVTGGTDGIGKSYAEELAKRGMKIVLISRSQDKLDQVSSEISEKFKVETKTIA--- 434
G+ +VTG + GIG+ A LAK G +V+ +RS++ L +V S E IA
Sbjct: 34 GKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGAASAHYIAGTM 93
Query: 435 VDFT-SEDIYDKIKASLAGLNIGVL--VNNVGMSYEYPEYFLDVPDLDNTIKKLITVNAL 605
D T +E + + GL++ +L + N ++ + + + ++K + VN L
Sbjct: 94 EDMTFAEQFVAQAGKLMGGLDMLILNHITNTSLNLFHDDI--------HHVRKSMEVNFL 145
Query: 606 SVCKMTRLVLPGMVERSKGAILNISSASGMYPVPLLTIYSATKAFVDFFSQCLHEEYKSK 785
S +T LP M+++S G+I+ +SS +G P++ YSA+K +D F + +EY
Sbjct: 146 SYVVLTVAALP-MLKQSNGSIVVVSSLAGKVAYPMVAAYSASKFALDGFFSSIRKEYSVS 204
Query: 786 GVIVQSVL 809
V V L
Sbjct: 205 RVNVSITL 212
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 41,314,788
Number of extensions: 1086955
Number of successful extensions: 4298
Number of sequences better than 1.0e-05: 49
Number of HSP's gapped: 4253
Number of HSP's successfully gapped: 49
Length of query: 355
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 251
Effective length of database: 14,868,908
Effective search space: 3732095908
Effective search space used: 3732095908
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003192
(1065 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_062631.1| estradiol 17-beta-dehydrogenase 12 [Mus musculu... 443 e-125
Alignment gi|NP_780394.1| inactive hydroxysteroid dehydrogenase-like prot... 211 1e-54
Alignment gi|NP_032317.2| testosterone 17-beta-dehydrogenase 3 [Mus muscu... 184 8e-47
Alignment gi|NP_001165583.1| dehydrogenase/reductase SDR family member 7B... 87 2e-17
Alignment gi|NP_663403.1| dehydrogenase/reductase SDR family member 7B is... 87 2e-17
Alignment gi|NP_079798.2| dehydrogenase/reductase SDR family member 7 pre... 79 8e-15
Alignment gi|NP_081810.1| 3-ketodihydrosphingosine reductase precursor [M... 74 1e-13
Alignment gi|NP_082066.2| dehydrogenase/reductase member 2 [Mus musculus]. 74 2e-13
Alignment gi|NP_032316.2| estradiol 17-beta-dehydrogenase 2 [Mus musculus]. 73 4e-13
Alignment gi|NP_444492.1| estradiol 17-beta-dehydrogenase 11 [Mus musculu... 71 1e-12
>ref|NP_062631.1| estradiol 17-beta-dehydrogenase 12 [Mus musculus].
Length = 312
Score = 443 bits (1140), Expect = e-125
Identities = 222/272 (81%), Positives = 245/272 (90%)
Frame = +3
Query: 117 METALPAAGFLYWVGASTVAYLALRISCWFFTALRVWGLGHEAGVGPWLGEWAVVTGGTD 296
ME A PAAGFLYWVGAST+AYLALR S F A +VW +G+EA VGP LGEWAVVTGGTD
Sbjct: 1 MECAPPAAGFLYWVGASTIAYLALRASYSLFRAFQVWCVGNEALVGPRLGEWAVVTGGTD 60
Query: 297 GIGKSYAEELAKRGMKIVLISRSQDKLDQVSSEISEKFKVETKTIAVDFTSEDIYDKIKA 476
GIGK+YAEELAKRGMKIVLISRSQDKL+QVS+ I EKF VET+TIAVDF+ +DIYDKIK
Sbjct: 61 GIGKAYAEELAKRGMKIVLISRSQDKLNQVSNNIKEKFNVETRTIAVDFSLDDIYDKIKT 120
Query: 477 SLAGLNIGVLVNNVGMSYEYPEYFLDVPDLDNTIKKLITVNALSVCKMTRLVLPGMVERS 656
L+GL IGVLVNNVGMSYEYPEYFL++PDLDNTIKKLI +N LSVCK+TRLVLPGMVERS
Sbjct: 121 GLSGLEIGVLVNNVGMSYEYPEYFLEIPDLDNTIKKLININVLSVCKVTRLVLPGMVERS 180
Query: 657 KGAILNISSASGMYPVPLLTIYSATKAFVDFFSQCLHEEYKSKGVIVQSVLPYYVATKLA 836
KG ILNISSASGM PVPLLTIYSATKAFVDFFSQCLHEEYKSKG+ VQSV+PY VATKLA
Sbjct: 181 KGVILNISSASGMLPVPLLTIYSATKAFVDFFSQCLHEEYKSKGIFVQSVMPYLVATKLA 240
Query: 837 KIKRPTWDKPSPETFVKSAMKTIGVQSRTHGY 932
KI++PT DKPS ETFVKSA+KT+G+Q+RT GY
Sbjct: 241 KIQKPTLDKPSAETFVKSAIKTVGLQTRTTGY 272
>ref|NP_780394.1| inactive hydroxysteroid dehydrogenase-like protein 1 [Mus
musculus].
Length = 330
Score = 211 bits (536), Expect = 1e-54
Identities = 112/271 (41%), Positives = 168/271 (61%), Gaps = 8/271 (2%)
Frame = +3
Query: 156 VGASTVAYLALRISCWFFTALRVW---GLGHEAGVGPWLGEWAVVTGGTDGIGKSYAEEL 326
VGA A ++ + C F++ +R+ LG + G WAV++G TDGIGK+YAEEL
Sbjct: 28 VGAWYTARKSITVICDFYSLVRLHFIPRLGSRPDLIKQYGRWAVISGATDGIGKAYAEEL 87
Query: 327 AKRGMKIVLISRSQDKLDQVSSEISEKFKVETKTIAVDFT-SEDIYDKIKASLAGLNIGV 503
A G+ ++LIS+ ++KL + I++ ++VET + DF+ +IY I+ +L +IG+
Sbjct: 88 ASHGLNVILISQEEEKLQAAAKHIADTYRVETLVLVADFSRGREIYAPIREALRDRDIGI 147
Query: 504 LVNNVGMSYEYPEYFLDVPDLDNTIKKLITVNALSVCKMTRLVLPGMVERSKGAILNISS 683
LVN+VG Y YP+YF VP+ +T+ ++ VN + M +VLPGMVER KGAI+ +SS
Sbjct: 148 LVNDVGAFYPYPQYFSQVPE--DTLWDIVNVNIAAASLMVHIVLPGMVERKKGAIVTVSS 205
Query: 684 ASGMYPVPLLTIYSATKAFVDFFSQCLHEEYKSKGVIVQSVLPYYV----ATKLAKIKRP 851
S P P L +SA+KA++D FS+ L EY SKG+ VQS++P+YV A + + R
Sbjct: 206 GSCCKPTPQLAAFSASKAYLDHFSRALQYEYASKGIFVQSLIPFYVTSSGAAPASFLHRC 265
Query: 852 TWDKPSPETFVKSAMKTIGVQSRTHGYRSIS 944
W PSP + + A+ T+G+ RT GY S S
Sbjct: 266 PWLAPSPRVYAQHAVSTLGISKRTTGYWSHS 296
>ref|NP_032317.2| testosterone 17-beta-dehydrogenase 3 [Mus musculus].
Length = 305
Score = 184 bits (468), Expect = 8e-47
Identities = 110/259 (42%), Positives = 152/259 (58%), Gaps = 3/259 (1%)
Frame = +3
Query: 261 LGEWAVVTGGTDGIGKSYAEELAKRGMKIVLISRSQDKLDQVSSEISEKFKVETKTIAVD 440
+G+WAV+TG DGIGK+Y+ ELA+ G+ +VLISR+ +KL ++ EI K + D
Sbjct: 43 MGQWAVITGAGDGIGKAYSFELARHGLNVVLISRTLEKLQTIAEEIERTTGSCVKIVQAD 102
Query: 441 FTSEDIYDKIKASLAGLNIGVLVNNVGMSYE-YPEYFLDVPDLDNTIKKLITVNALSVCK 617
FT EDIYD IK L GL IG+LVNNVGM +P +FL + LI N SV K
Sbjct: 103 FTREDIYDHIKEHLEGLEIGILVNNVGMLPSFFPSHFLST---SGESQNLIHCNITSVVK 159
Query: 618 MTRLVLPGMVERSKGAILNISSASGMYPVPLLTIYSATKAFVDFFSQCLHEEYKSKGVIV 797
MT+LVL M R KG ILNISS + + P PL ++YSA+KAFV FS+ L EY+ KG+I+
Sbjct: 160 MTQLVLKHMESRRKGLILNISSGAALRPWPLYSLYSASKAFVYTFSKALSVEYRDKGIII 219
Query: 798 QSVLPYYVATKLAKIKRPTWDKPSPETFVKSAMK--TIGVQSRTHGYRSISCGSVSAACL 971
Q + PY ++T + K K + E FVK ++K TIG + SCG ++ +
Sbjct: 220 QVLTPYSISTPMTKYLNNKMTKTADE-FVKESLKYVTIGAE---------SCGCLAHEII 269
Query: 972 LAVFKIACIRHSYGSLSEK 1028
+ R Y S +++
Sbjct: 270 AIILNRIPSRIFYSSTAQR 288
>ref|NP_001165583.1| dehydrogenase/reductase SDR family member 7B isoform 1 [Mus
musculus].
Length = 314
Score = 87.0 bits (214), Expect = 2e-17
Identities = 60/194 (30%), Positives = 96/194 (49%), Gaps = 7/194 (3%)
Frame = +3
Query: 276 VVTGGTDGIGKSYAEELAKRGMKIVLISRSQDKLDQVSSEISEKFKVET-KTIAVDFTSE 452
VVTG T G+G+ A+ G K+VL R+ L+++S E++ + +T + V F
Sbjct: 47 VVTGATSGLGRECAKVFHAAGAKLVLCGRNVKALEELSRELAGSSQGQTHQPFVVTFDLA 106
Query: 453 DIYDKIKASLAGLN----IGVLVNNVGMSYE--YPEYFLDVPDLDNTIKKLITVNALSVC 614
D A+ L + VL+NN G+SY + +DV +K++ +N
Sbjct: 107 DPGTIAAAAAEILQCFGYVDVLINNAGISYRGTISDTIVDVD------RKVMEINYFGPV 160
Query: 615 KMTRLVLPGMVERSKGAILNISSASGMYPVPLLTIYSATKAFVDFFSQCLHEEYKSKGVI 794
+T+ +LP MVER +G I+ ISS G +P + YSA+K F CL E + +
Sbjct: 161 ALTKALLPSMVERKQGHIVAISSIQGKISIPFRSAYSASKHATQAFFDCLRAEMEEANIK 220
Query: 795 VQSVLPYYVATKLA 836
V + P Y+ T L+
Sbjct: 221 VTVISPGYIHTNLS 234
>ref|NP_663403.1| dehydrogenase/reductase SDR family member 7B isoform 2 [Mus
musculus].
Length = 323
Score = 87.0 bits (214), Expect = 2e-17
Identities = 60/194 (30%), Positives = 96/194 (49%), Gaps = 7/194 (3%)
Frame = +3
Query: 276 VVTGGTDGIGKSYAEELAKRGMKIVLISRSQDKLDQVSSEISEKFKVET-KTIAVDFTSE 452
VVTG T G+G+ A+ G K+VL R+ L+++S E++ + +T + V F
Sbjct: 56 VVTGATSGLGRECAKVFHAAGAKLVLCGRNVKALEELSRELAGSSQGQTHQPFVVTFDLA 115
Query: 453 DIYDKIKASLAGLN----IGVLVNNVGMSYE--YPEYFLDVPDLDNTIKKLITVNALSVC 614
D A+ L + VL+NN G+SY + +DV +K++ +N
Sbjct: 116 DPGTIAAAAAEILQCFGYVDVLINNAGISYRGTISDTIVDVD------RKVMEINYFGPV 169
Query: 615 KMTRLVLPGMVERSKGAILNISSASGMYPVPLLTIYSATKAFVDFFSQCLHEEYKSKGVI 794
+T+ +LP MVER +G I+ ISS G +P + YSA+K F CL E + +
Sbjct: 170 ALTKALLPSMVERKQGHIVAISSIQGKISIPFRSAYSASKHATQAFFDCLRAEMEEANIK 229
Query: 795 VQSVLPYYVATKLA 836
V + P Y+ T L+
Sbjct: 230 VTVISPGYIHTNLS 243
>ref|NP_079798.2| dehydrogenase/reductase SDR family member 7 precursor [Mus
musculus].
Length = 338
Score = 78.6 bits (192), Expect = 8e-15
Identities = 63/196 (32%), Positives = 98/196 (50%), Gaps = 9/196 (4%)
Frame = +3
Query: 279 VTGGTDGIGKSYAEELAKRGMKIVLISRSQDKLDQVSSEISEKFKVETKTIAV------D 440
VTG + GIG+ A +L+K G+ +VL +R +L++V E ++ K I V D
Sbjct: 55 VTGASSGIGEELAFQLSKLGVSLVLSARRAQELERVKRRCLENGNLKEKDILVLPLDLTD 114
Query: 441 FTSEDIYDKIKASLAGLNIGVLVNNVGMSYE--YPEYFLDVPDLDNTIKKLITVNALSVC 614
+S + K G I +LVNN G S E LDV K+LI +N +
Sbjct: 115 TSSHEAATKAVLQEFG-KIDILVNNGGRSQRSLVLETNLDV------FKELINLNYIGTV 167
Query: 615 KMTRLVLPGMVERSKGAILNISSASGMYPVPLLTIYSATKAFVDFFSQCLHEEY-KSKGV 791
+T+ VLP M+ER +G I+ ++S +G+ V L + Y A+K + F LH E + G+
Sbjct: 168 SLTKCVLPHMIERKQGKIVTVNSIAGIASVSLSSGYCASKHALRGFFNALHSELGQYPGI 227
Query: 792 IVQSVLPYYVATKLAK 839
+V P V + + K
Sbjct: 228 TFCNVYPGPVQSDIVK 243
>ref|NP_081810.1| 3-ketodihydrosphingosine reductase precursor [Mus musculus].
Length = 332
Score = 74.3 bits (181), Expect = 1e-13
Identities = 62/190 (32%), Positives = 96/190 (50%), Gaps = 7/190 (3%)
Frame = +3
Query: 264 GEWAVVTGGTDGIGKSYAEELAKRGMKIVLISRSQDKLDQVSSEISEKFKVETK----TI 431
G VVTGG+ GIGK A E K+G I L++R++DKL Q +I EK + K I
Sbjct: 32 GAHVVVTGGSSGIGKCIAIECYKQGAFITLVARNEDKLLQAKKDI-EKHSINDKQVVLCI 90
Query: 432 AVDFTSE--DIYDKIKASLAGLN-IGVLVNNVGMSYEYPEYFLDVPDLDNTIKKLITVNA 602
+VD + + + + IK + L + +LVN G S L+V ++ +KL+++N
Sbjct: 91 SVDVSQDYNQVENVIKQAQEKLGPVDMLVNCAGTSMSGKFEELEV----SSFEKLMSINY 146
Query: 603 LSVCKMTRLVLPGMVERSKGAILNISSASGMYPVPLLTIYSATKAFVDFFSQCLHEEYKS 782
L +R V+ M ER G I+ +SS +G + T YS++K + ++ L E K
Sbjct: 147 LGSVYPSRAVITTMKERRVGRIVFVSSQAGQLGLFGFTAYSSSKFAIRGLAEALQMEVKP 206
Query: 783 KGVIVQSVLP 812
V V P
Sbjct: 207 YNVYVTVAYP 216
>ref|NP_082066.2| dehydrogenase/reductase member 2 [Mus musculus].
Length = 282
Score = 73.9 bits (180), Expect = 2e-13
Identities = 62/233 (26%), Positives = 104/233 (44%), Gaps = 3/233 (1%)
Frame = +3
Query: 264 GEWAVVTGGTDGIGKSYAEELAKRGMKIVLISRSQDKLDQVSSEISEKFKVETKTIAVDF 443
G+ AV+TG T GIG + A LA+ G +V+ SR Q+ +D+ + + E+ T T+
Sbjct: 37 GKVAVITGSTRGIGFAIARRLAQDGAHVVISSRKQENVDEAVTILKEEGLSVTGTMCHVG 96
Query: 444 TSEDIYDKIKASL---AGLNIGVLVNNVGMSYEYPEYFLDVPDLDNTIKKLITVNALSVC 614
+ED + +L G++ V V V P + + K++ VN S
Sbjct: 97 KAEDRQHLVTTALKHSGGIDFLVCVAGVN-----PLVGSTLGASEQIWDKILDVNVKSPA 151
Query: 615 KMTRLVLPGMVERSKGAILNISSASGMYPVPLLTIYSATKAFVDFFSQCLHEEYKSKGVI 794
+ VLP M R G+++ +SS PVP L +Y+ +K + + L E KG+
Sbjct: 152 LLLSKVLPYMENRRGGSVVLVSSGVAYVPVPKLGVYNTSKTALLGLCKSLAVELAPKGIR 211
Query: 795 VQSVLPYYVATKLAKIKRPTWDKPSPETFVKSAMKTIGVQSRTHGYRSISCGS 953
V ++P + T + ++ T P+ +K +G G S C S
Sbjct: 212 VNCLVPGIIKTDFS-LREKTMPNMLPDMNKIFGVKRLGEPEECAGLVSFLCSS 263
>ref|NP_032316.2| estradiol 17-beta-dehydrogenase 2 [Mus musculus].
Length = 381
Score = 72.8 bits (177), Expect = 4e-13
Identities = 52/203 (25%), Positives = 96/203 (47%), Gaps = 3/203 (1%)
Frame = +3
Query: 276 VVTGGTDGIGKSYAEELAKRGMKIV--LISRSQDKLDQVSSEISEKFKVETKTIAVDFTS 449
+VTG G G A+ L K G + ++ + +++ SE+ V +
Sbjct: 87 LVTGADSGFGHGLAKHLDKLGFTVFAGVLDKEGPGAEELRKHCSERLSVLQMDVTKPEQI 146
Query: 450 EDIYDKIKASLAGLNIGVLVNNVGMSYEYPEYFLDVPDLDNTI-KKLITVNALSVCKMTR 626
+D + K+ + + +VNN G+ + P +D + +I +K + VN ++T+
Sbjct: 147 KDAHSKVTEKIQDKGLWAVVNNAGV-FHLP---IDGELIPMSIYRKCMAVNFFGTVEVTK 202
Query: 627 LVLPGMVERSKGAILNISSASGMYPVPLLTIYSATKAFVDFFSQCLHEEYKSKGVIVQSV 806
LP ++ +SKG ++N+SS G P+ + + Y+ATKA + FS + +E GV V ++
Sbjct: 203 AFLP-LLRKSKGRLVNVSSMGGTVPLQMTSAYAATKAALTMFSTIIRQELDKWGVKVVTI 261
Query: 807 LPYYVATKLAKIKRPTWDKPSPE 875
P T + + WDK E
Sbjct: 262 KPGGFKTNITG-SQDIWDKMEKE 283
>ref|NP_444492.1| estradiol 17-beta-dehydrogenase 11 [Mus musculus].
Length = 298
Score = 71.2 bits (173), Expect = 1e-12
Identities = 55/199 (27%), Positives = 98/199 (49%), Gaps = 7/199 (3%)
Frame = +3
Query: 264 GEWAVVTGGTDGIGKSYAEELAKRGMKIVLISRSQDKLDQVSSEISEKFKVETKTIAVDF 443
GE ++TG GIG+ A E AK K+VL +++ +++ +++ K + VD
Sbjct: 36 GEIVLITGAGHGIGRLTAYEFAKLNTKLVLWDINKNGIEETAAK-CRKLGAQAHPFVVDC 94
Query: 444 TS-EDIYD---KIKASLAGLNIGVLVNNVGMSYEYPEYFLDVPDLDNTIKKLITVNALSV 611
+ E+IY K+K + ++ +LVNN G+ Y + P ++ T + VN L+
Sbjct: 95 SQREEIYSAAKKVKEEVG--DVSILVNNAGVVYTADLFATQDPQIEKTFE----VNVLAH 148
Query: 612 CKMTRLVLPGMVERSKGAILNISSASGMYPVPLLTIYSATKAFVDFFSQCLHEEYKS--- 782
T+ LP M++ + G I+ ++SA+G VP L Y ++K F + L +E +
Sbjct: 149 FWTTKAFLPVMMKNNHGHIVTVASAAGHTVVPFLLAYCSSKFAAVGFHRALTDELAALGR 208
Query: 783 KGVIVQSVLPYYVATKLAK 839
GV + P ++ T K
Sbjct: 209 TGVRTSCLCPNFINTGFIK 227
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 35,332,981
Number of extensions: 930018
Number of successful extensions: 3527
Number of sequences better than 1.0e-05: 47
Number of HSP's gapped: 3485
Number of HSP's successfully gapped: 47
Length of query: 355
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 253
Effective length of database: 12,553,887
Effective search space: 3176133411
Effective search space used: 3176133411
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003192
(1065 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003353940.1| PREDICTED: estradiol 17-beta-dehydrogenase 1... 541 e-154
Alignment gi|XP_003126882.1| PREDICTED: inactive hydroxysteroid dehydroge... 226 2e-59
Alignment gi|XP_003130670.1| PREDICTED: testosterone 17-beta-dehydrogenas... 191 5e-49
Alignment gi|XP_001925948.1| PREDICTED: 3-ketodihydrosphingosine reductas... 79 6e-15
Alignment gi|XP_003129386.2| PREDICTED: estradiol 17-beta-dehydrogenase 1... 76 4e-14
Alignment gi|XP_001928783.1| PREDICTED: dehydrogenase/reductase SDR famil... 75 5e-14
Alignment gi|NP_999184.1| dehydrogenase/reductase SDR family member 4 [Su... 74 1e-13
Alignment gi|NP_001230551.1| hydroxysteroid (17-beta) dehydrogenase 13 [S... 72 5e-13
Alignment gi|NP_001161121.1| estradiol 17-beta-dehydrogenase 2 [Sus scrof... 70 2e-12
Alignment gi|NP_999413.1| corticosteroid 11-beta-dehydrogenase isozyme 1 ... 68 1e-11
>ref|XP_003353940.1| PREDICTED: estradiol 17-beta-dehydrogenase 12 [Sus scrofa].
Length = 312
Score = 541 bits (1394), Expect = e-154
Identities = 276/284 (97%), Positives = 278/284 (97%), Gaps = 1/284 (0%)
Frame = +3
Query: 117 METALPAAGFLYWVGASTVAYLALRISCWFFTALRVWGLGHEAGVGPWLGEWAVVTGGTD 296
METALPAAGFLYWVGASTVAYLALRISCWFFTALRVWGLGHEAGVGPWLGEWAVVTGGTD
Sbjct: 1 METALPAAGFLYWVGASTVAYLALRISCWFFTALRVWGLGHEAGVGPWLGEWAVVTGGTD 60
Query: 297 GIGKSYAEELAKRGMKIVLISRSQDKLDQVSSEISEKFKVETKTIAVDFTSEDIYDKIKA 476
GIGKSYAEELAKRGMKIVLISRSQDKLDQVSSEISEKFKVETKTIAVDFTSEDIYDKIKA
Sbjct: 61 GIGKSYAEELAKRGMKIVLISRSQDKLDQVSSEISEKFKVETKTIAVDFTSEDIYDKIKA 120
Query: 477 SLAGLNIGVLVNNVGMSYEYPEYFLDVPDLDNTIKKLITVNALSVCKMTRLVLPGMVERS 656
SLAGLNIGVLVNNVGMSYEYPEYFLDVPDLDNTIKKLITVNALSVCKMTRLVLPGMVERS
Sbjct: 121 SLAGLNIGVLVNNVGMSYEYPEYFLDVPDLDNTIKKLITVNALSVCKMTRLVLPGMVERS 180
Query: 657 KGAILNISSASGMYPVPLLTIYSATKAFVDFFSQCLHEEYKSKGVIVQSVLPYYVATKLA 836
KGAILNISSASGMYPVPLLTIYSATKAFVDFFSQCLHEEYKSKGVIVQSVLPYYVATKLA
Sbjct: 181 KGAILNISSASGMYPVPLLTIYSATKAFVDFFSQCLHEEYKSKGVIVQSVLPYYVATKLA 240
Query: 837 KIKRPTWDKPSPETFVKSAMKTIGVQSRTHGYRSIS-CGSVSAA 965
KIKRPTWDKPSPETFVKSAMKTIGVQSRT+GY S SVSA+
Sbjct: 241 KIKRPTWDKPSPETFVKSAMKTIGVQSRTNGYPIHSLVASVSAS 284
>ref|XP_003126882.1| PREDICTED: inactive hydroxysteroid dehydrogenase-like protein
1-like [Sus scrofa].
Length = 330
Score = 226 bits (575), Expect = 2e-59
Identities = 121/271 (44%), Positives = 177/271 (65%), Gaps = 8/271 (2%)
Frame = +3
Query: 156 VGASTVAYLALRISCWFFTALRVW---GLGHEAGVGPWLGEWAVVTGGTDGIGKSYAEEL 326
VGA A ++ + C F++ +R+ L A + G WAVV+G TDGIG++YAEEL
Sbjct: 28 VGAWYTARKSITVVCDFYSLIRLHFIPRLVSRADLIKQYGRWAVVSGATDGIGRAYAEEL 87
Query: 327 AKRGMKIVLISRSQDKLDQVSSEISEKFKVETKTIAVDFTS-EDIYDKIKASLAGLNIGV 503
A RG+ IVLISR+Q+KL V+ +I++ ++VET I DF+S +IYD+I+ +L +IG+
Sbjct: 88 ASRGLNIVLISRNQEKLQTVARDIADAYRVETDVIVADFSSGREIYDRIREALKDRDIGI 147
Query: 504 LVNNVGMSYEYPEYFLDVPDLDNTIKKLITVNALSVCKMTRLVLPGMVERSKGAILNISS 683
LVNNVG+ Y YP+YF V + +T+ ++ VN + + R+VLPGMVER KGA++ ISS
Sbjct: 148 LVNNVGVFYPYPQYFTQVSE--DTLWDIVNVNIAAASLLVRIVLPGMVERKKGAVVTISS 205
Query: 684 ASGMYPVPLLTIYSATKAFVDFFSQCLHEEYKSKGVIVQSVLPYYVATKLAK----IKRP 851
S P P L +SA+KA++D FS+ L EY SKG+ VQS++P+YVAT + + +
Sbjct: 206 GSCCKPTPQLAAFSASKAYLDHFSRALQYEYASKGIFVQSLIPFYVATNVTTPGSFLHKC 265
Query: 852 TWDKPSPETFVKSAMKTIGVQSRTHGYRSIS 944
W PSP+ + A+ T+G+ RT GY S S
Sbjct: 266 PWLVPSPKVYAHHAVSTLGISKRTTGYWSHS 296
>ref|XP_003130670.1| PREDICTED: testosterone 17-beta-dehydrogenase 3-like [Sus scrofa].
Length = 310
Score = 191 bits (486), Expect = 5e-49
Identities = 105/257 (40%), Positives = 155/257 (60%), Gaps = 1/257 (0%)
Frame = +3
Query: 261 LGEWAVVTGGTDGIGKSYAEELAKRGMKIVLISRSQDKLDQVSSEISEKFKVETKTIAVD 440
+G+WAV+TG DGIGK+Y+ ELA++G+ +VLISR+ +KL +++EI K I D
Sbjct: 47 MGQWAVITGAGDGIGKAYSFELARQGLNVVLISRTLEKLQTIAAEIEWTIGTSVKIIQAD 106
Query: 441 FTSEDIYDKIKASLAGLNIGVLVNNVGMSYE-YPEYFLDVPDLDNTIKKLITVNALSVCK 617
FT +DIY+ IK L GL IG+LVNNVGM P +FL+ PD I+ +I N SV K
Sbjct: 107 FTKDDIYEDIKEKLKGLEIGILVNNVGMLPNLLPSHFLNTPD---NIQSVIHCNITSVVK 163
Query: 618 MTRLVLPGMVERSKGAILNISSASGMYPVPLLTIYSATKAFVDFFSQCLHEEYKSKGVIV 797
MT+L+L M R KG ILNISS ++P PL ++YS++KAFV FS+ L EY++KG+I+
Sbjct: 164 MTQLILKHMESRQKGLILNISSGVALFPWPLYSMYSSSKAFVCTFSKALQAEYEAKGIII 223
Query: 798 QSVLPYYVATKLAKIKRPTWDKPSPETFVKSAMKTIGVQSRTHGYRSISCGSVSAACLLA 977
Q + P+ V+T++ + + FVK ++K + + T CG ++ L
Sbjct: 224 QVLTPHAVSTQMTNYLNTNMITKTADEFVKESLKYVTIGDET-------CGCLAHEILAI 276
Query: 978 VFKIACIRHSYGSLSEK 1028
+ + R Y S +K
Sbjct: 277 ILSLIPSRVFYSSTFQK 293
>ref|XP_001925948.1| PREDICTED: 3-ketodihydrosphingosine reductase-like [Sus scrofa].
Length = 332
Score = 78.6 bits (192), Expect = 6e-15
Identities = 65/190 (34%), Positives = 97/190 (51%), Gaps = 7/190 (3%)
Frame = +3
Query: 264 GEWAVVTGGTDGIGKSYAEELAKRGMKIVLISRSQDKLDQVSSEISEKFKVETK----TI 431
G VVTGG+ GIGK A E K+G I L++R++DKL Q EI EK + K I
Sbjct: 32 GAHVVVTGGSSGIGKCIAIECYKQGAFITLVARNEDKLLQAKKEI-EKHSINDKQVVLCI 90
Query: 432 AVDFTSE--DIYDKIKASLAGLN-IGVLVNNVGMSYEYPEYFLDVPDLDNTIKKLITVNA 602
+VD + + + + IK + L + +LVN GMS L+V +T ++L++VN
Sbjct: 91 SVDVSQDYSQVENVIKQAQEKLGPVDMLVNCAGMSLSGKFEDLEV----STFERLMSVNY 146
Query: 603 LSVCKMTRLVLPGMVERSKGAILNISSASGMYPVPLLTIYSATKAFVDFFSQCLHEEYKS 782
L +R V+ M ER G I+ +SS +G + T YS++K + ++ L E K
Sbjct: 147 LGSVYPSRAVITTMKERRVGRIVFVSSQAGQLGLFGFTAYSSSKFAIRGLAEALQMEVKP 206
Query: 783 KGVIVQSVLP 812
V V P
Sbjct: 207 YNVYVTVAYP 216
>ref|XP_003129386.2| PREDICTED: estradiol 17-beta-dehydrogenase 11-like [Sus scrofa].
Length = 313
Score = 75.9 bits (185), Expect = 4e-14
Identities = 60/206 (29%), Positives = 100/206 (48%), Gaps = 7/206 (3%)
Frame = +3
Query: 264 GEWAVVTGGTDGIGKSYAEELAKRGMKIVLISRSQDKLDQVSSEISEKFKVETKTIAVDF 443
GE ++TG G+G+ A E AK K+VL ++ L++ + E ++ + VD
Sbjct: 36 GEIVLITGAGHGLGRLTAFEFAKLKCKLVLWDINKHGLEETADE-CKRLGSKAHAFVVDC 94
Query: 444 TS-EDIYD---KIKASLAGLNIGVLVNNVGMSYEYPEYFLDVPDLDNTIKKLITVNALSV 611
+ EDIY K+KA + ++ +LVNN G+ Y + P ++ T + VN L+
Sbjct: 95 SDREDIYSSAKKVKAEVG--DVSILVNNAGVVYTSDLFATQDPQIEKTFE----VNILAH 148
Query: 612 CKMTRLVLPGMVERSKGAILNISSASGMYPVPLLTIYSATKAFVDFFSQCLHEE---YKS 782
T+ LP M++ + G I+ ++SA+G +P L Y ++K F + L EE K
Sbjct: 149 FWTTKAFLPAMMKNNHGHIVTVASAAGHAGIPFLLAYCSSKFAAVGFHKALTEELAALKR 208
Query: 783 KGVIVQSVLPYYVATKLAKIKRPTWD 860
GV + P ++ T K R D
Sbjct: 209 TGVKTTCLCPNFINTGFIKNPRKEID 234
>ref|XP_001928783.1| PREDICTED: dehydrogenase/reductase SDR family member 7 [Sus
scrofa].
Length = 339
Score = 75.5 bits (184), Expect = 5e-14
Identities = 59/194 (30%), Positives = 97/194 (50%), Gaps = 7/194 (3%)
Frame = +3
Query: 279 VTGGTDGIGKSYAEELAKRGMKIVLISRSQDKLDQVSSEISEKFKVETKTIAV------D 440
VTG + GIG+ +L+K G+ +VL +R +L++V E ++ K I + +
Sbjct: 55 VTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKGKDILILPLDLAN 114
Query: 441 FTSEDIYDKIKASLAGLNIGVLVNNVGMSYEYPEYFLDVPDLDNTIKKLITVNALSVCKM 620
+S ++ K G I +LVNN G+S + L V + K+L+ VN L +
Sbjct: 115 RSSHEVATKAVLQEFG-KIDILVNNGGVS----QRSLCVDTSLDVYKELMEVNYLGTVSL 169
Query: 621 TRLVLPGMVERSKGAILNISSASGMYPVPLLTIYSATK-AFVDFFSQCLHEEYKSKGVIV 797
T+ VLP M+E+ +G I+ ++S G+ PL Y A+K A FF+ E G+ V
Sbjct: 170 TKCVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTELATYPGITV 229
Query: 798 QSVLPYYVATKLAK 839
+V P V + + K
Sbjct: 230 SNVCPGPVKSNIVK 243
>ref|NP_999184.1| dehydrogenase/reductase SDR family member 4 [Sus scrofa].
Length = 260
Score = 74.3 bits (181), Expect = 1e-13
Identities = 55/212 (25%), Positives = 108/212 (50%), Gaps = 3/212 (1%)
Frame = +3
Query: 273 AVVTGGTDGIGKSYAEELAKRGMKIVLISRSQDKLDQVSSEISEKFKVETKTIAVDFTSE 452
A+VT TDGIG + A LA+ G +V+ SR Q+ +D+ + + + T T+ +E
Sbjct: 17 ALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDRTVATLQGEGLSVTGTVCHVGKAE 76
Query: 453 DIYDKIKASLAGLNIGV--LVNNVGMSYEYPEYFLDVPDLDNTI-KKLITVNALSVCKMT 623
D +++ A L+ GV LV+N ++ +F ++ D + K++ VN + MT
Sbjct: 77 D-RERLVAMAVNLHGGVDILVSNAAVN----PFFGNIIDATEEVWDKILHVNVKATVLMT 131
Query: 624 RLVLPGMVERSKGAILNISSASGMYPVPLLTIYSATKAFVDFFSQCLHEEYKSKGVIVQS 803
+ V+P M +R G++L +SS +P P L Y+ +K + ++ L E + + V
Sbjct: 132 KAVVPEMEKRGGGSVLIVSSVGAYHPFPNLGPYNVSKTALLGLTKNLAVELAPRNIRVNC 191
Query: 804 VLPYYVATKLAKIKRPTWDKPSPETFVKSAMK 899
+ P + T +++ W + + ++K +++
Sbjct: 192 LAPGLIKTNFSQV---LWMDKARKEYMKESLR 220
>ref|NP_001230551.1| hydroxysteroid (17-beta) dehydrogenase 13 [Sus scrofa].
Length = 300
Score = 72.0 bits (175), Expect = 5e-13
Identities = 58/197 (29%), Positives = 97/197 (49%), Gaps = 5/197 (2%)
Frame = +3
Query: 264 GEWAVVTGGTDGIGKSYAEELAKRGMKIVLISRSQDKLDQVSSEISEKFKVETKTIAVDF 443
GE +VTG GIG+ A E AKR ++VL ++ L++ ++E +K T VD
Sbjct: 36 GEIVLVTGAGHGIGRKIAYEFAKRKSRLVLWDINKHGLEETAAE-CKKLGATTHAFVVDC 94
Query: 444 TS-EDIYDKIKASLAGL-NIGVLVNNVGMSYEYPEYFLDVPDLDNTIKKLITVNALSVCK 617
++ E+IY+ + + +I ++VNN G YP L D + TI VN L
Sbjct: 95 SNREEIYNSVNQVKKEVGDITIVVNNAGTI--YPADLLSTKDEEITI--TFEVNILGHFW 150
Query: 618 MTRLVLPGMVERSKGAILNISSASGMYPVPLLTIYSATKAFVDFFSQCLHEEYKS---KG 788
+T+ +LP M+ R+ G ++ ++S G +P L Y ++K F + L E ++ G
Sbjct: 151 ITKALLPAMMSRNHGHVVTVASLCGHGVIPYLIPYCSSKFAAVGFHRALTAELEAVGKTG 210
Query: 789 VIVQSVLPYYVATKLAK 839
+ + P +V T K
Sbjct: 211 IKTSCLCPVFVNTGFTK 227
>ref|NP_001161121.1| estradiol 17-beta-dehydrogenase 2 [Sus scrofa].
Length = 388
Score = 70.1 bits (170), Expect = 2e-12
Identities = 54/201 (26%), Positives = 96/201 (47%), Gaps = 5/201 (2%)
Frame = +3
Query: 276 VVTGGTDGIGKSYAEELAKRGMKIVLISRSQDKLDQVSSEISEKFKVETKTIAVDFTSE- 452
++TGG GIG + ++ L K G ++ + D+ + E+ + +D T+
Sbjct: 87 LITGGDSGIGHALSKYLDKLGF--IVFAGVLDEKGSGAEELRRTCSKHLSVLQLDITNSQ 144
Query: 453 ---DIYDKIKASLAGLNIGVLVNNVGMSYEYPEYFLDVPDLDNT-IKKLITVNALSVCKM 620
D + K+ + + +VNN G+ +P +D + T K+ + VN ++
Sbjct: 145 QIRDAHSKVMEKVQNRGLWAVVNNAGI-LGFP---IDGELIPMTQYKRCMAVNFFGAVEV 200
Query: 621 TRLVLPGMVERSKGAILNISSASGMYPVPLLTIYSATKAFVDFFSQCLHEEYKSKGVIVQ 800
T+ LP ++ +SKG ++NISS +G P+ + YS+TKA + FS + +E GV V
Sbjct: 201 TKAFLP-LLRKSKGRLVNISSMAGGVPMEKMAAYSSTKAALTMFSAVMRKELSKWGVKVS 259
Query: 801 SVLPYYVATKLAKIKRPTWDK 863
+ P T +A WDK
Sbjct: 260 VIQPGSFQTNIAGTS-DLWDK 279
>ref|NP_999413.1| corticosteroid 11-beta-dehydrogenase isozyme 1 [Sus scrofa].
Length = 292
Score = 67.8 bits (164), Expect = 1e-11
Identities = 55/186 (29%), Positives = 96/186 (51%), Gaps = 4/186 (2%)
Frame = +3
Query: 264 GEWAVVTGGTDGIGKSYAEELAKRGMKIVLISRSQDKLDQVSSEISEKFKVETKTIA--- 434
G+ +VTG + GIG+ A LA+ G +V+ +RS++ L +V S E +A
Sbjct: 34 GKKVIVTGASKGIGREMAYHLARMGAHVVVTARSEETLKKVVSHSLELGASSAHYVAGTM 93
Query: 435 VDFT-SEDIYDKIKASLAGLNIGVLVNNVGMSYEYPEYFLDVPDLDNTIKKLITVNALSV 611
D T +E K L GL++ +++N++ + + V D + +++ + VN LS
Sbjct: 94 EDMTFAEQFVAKAGKLLGGLDM-LILNHITQA-----FMTSVYDDIHLVRRSMEVNFLSY 147
Query: 612 CKMTRLVLPGMVERSKGAILNISSASGMYPVPLLTIYSATKAFVDFFSQCLHEEYKSKGV 791
++ LP M+++S G+I+ +SS +G PL+ YSA+K +D F + +EY V
Sbjct: 148 VVLSVAALP-MLKQSNGSIVVVSSQAGKMANPLVAPYSASKFALDGFFSSITKEYSVTKV 206
Query: 792 IVQSVL 809
V L
Sbjct: 207 NVSITL 212
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 25,817,571
Number of extensions: 681105
Number of successful extensions: 2683
Number of sequences better than 1.0e-05: 33
Number of HSP's gapped: 2653
Number of HSP's successfully gapped: 33
Length of query: 355
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 255
Effective length of database: 8,854,232
Effective search space: 2257829160
Effective search space used: 2257829160
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003192
(1065 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 539 e-150
>Sscrofa_Chr02
|| Length = 162569375
Score = 539 bits (272), Expect = e-150
Identities = 275/276 (99%)
Strand = Plus / Minus
Query: 1 tctttgtaggagcagcgcctattgctgtagtcttcaccgtcacggccggcgcttcttctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20211968 tctttgtaggagcagcgcctattgctgtagtcttcaccgtcacggccggcgcttcttctt 20211909
Query: 61 ggattcattcattcgtctttttcattcgcgaaggtagtgaggcccggttgaaagccatgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20211908 ggattcattcattcgtctttttcattcgcgaaggtagtgaggcccggttgaaagccatgg 20211849
Query: 121 agacagctctgcctgcagcgggcttcctgtactgggtgggcgcgagcaccgtggcctacc 180
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20211848 aaacagctctgcctgcagcgggcttcctgtactgggtgggcgcgagcaccgtggcctacc 20211789
Query: 181 tggctctgcgcatctcgtgctggttcttcacggcccttcgggtctggggtttgggtcacg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20211788 tggctctgcgcatctcgtgctggttcttcacggcccttcgggtctggggtttgggtcacg 20211729
Query: 241 aggcgggggtcggcccgtggctcggtgaatgggcag 276
||||||||||||||||||||||||||||||||||||
Sbjct: 20211728 aggcgggggtcggcccgtggctcggtgaatgggcag 20211693
Score = 264 bits (133), Expect = 9e-68
Identities = 150/153 (98%), Gaps = 2/153 (1%)
Strand = Plus / Minus
Query: 799 agagtgtcctgccctactatgtcgccacaaaactggctaaaattaaaaggccaacttggg 858
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20063026 agagtgtcctgccctactatgtcgccacaaaactggctaaaattaaaaggccaacttggg 20062967
Query: 859 acaagccctctccagagacgtttgtgaagtctgcaatgaaaaccatcggcgtgcaatctc 918
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20062966 acaagccctctccagagacgtttgtgaagtctgcaatgaaaaccatcggcgtgcaatctc 20062907
Query: 919 gaacccacggata-ccgatcca-tctcttgtgg 949
||||| ||||||| |||||||| ||||||||||
Sbjct: 20062906 gaaccaacggatacccgatccattctcttgtgg 20062874
Score = 214 bits (108), Expect = 7e-53
Identities = 108/108 (100%)
Strand = Plus / Minus
Query: 400 gtgaaaaattcaaagtggaaacaaagaccattgctgttgactttacatcagaagatattt 459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20116135 gtgaaaaattcaaagtggaaacaaagaccattgctgttgactttacatcagaagatattt 20116076
Query: 460 atgataaaattaaagcaagcttggcaggtcttaatattggtgttttag 507
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20116075 atgataaaattaaagcaagcttggcaggtcttaatattggtgttttag 20116028
Score = 168 bits (85), Expect = 4e-39
Identities = 85/85 (100%)
Strand = Plus / Minus
Query: 651 agatctaaaggggcaattctgaacatctcctctgccagtggcatgtacccagttccactg 710
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20073240 agatctaaaggggcaattctgaacatctcctctgccagtggcatgtacccagttccactg 20073181
Query: 711 ctgaccatctactctgcaaccaagg 735
|||||||||||||||||||||||||
Sbjct: 20073180 ctgaccatctactctgcaaccaagg 20073156
Score = 159 bits (80), Expect = 4e-36
Identities = 80/80 (100%)
Strand = Plus / Minus
Query: 322 agttagcaaagcgtggcatgaagattgtccttatcagcagatcccaggacaaactggacc 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20157505 agttagcaaagcgtggcatgaagattgtccttatcagcagatcccaggacaaactggacc 20157446
Query: 382 aggtttccagtgaaataagt 401
||||||||||||||||||||
Sbjct: 20157445 aggtttccagtgaaataagt 20157426
Score = 133 bits (67), Expect = 2e-28
Identities = 67/67 (100%)
Strand = Plus / Minus
Query: 506 agtgaacaatgtgggaatgtcatacgaatatccagaatactttttggacgttcctgactt 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20101069 agtgaacaatgtgggaatgtcatacgaatatccagaatactttttggacgttcctgactt 20101010
Query: 566 ggacaat 572
|||||||
Sbjct: 20101009 ggacaat 20101003
Score = 129 bits (65), Expect = 3e-27
Identities = 65/65 (100%)
Strand = Plus / Minus
Query: 733 aggcttttgtagatttcttctctcagtgcctccatgaggaatataagagcaagggcgtca 792
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20070783 aggcttttgtagatttcttctctcagtgcctccatgaggaatataagagcaagggcgtca 20070724
Query: 793 ttgtg 797
|||||
Sbjct: 20070723 ttgtg 20070719
Score = 99.6 bits (50), Expect = 3e-18
Identities = 50/50 (100%)
Strand = Plus / Minus
Query: 274 cagttgtcacaggtggtactgatggaattggaaaatcatatgcagaagag 323
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20160573 cagttgtcacaggtggtactgatggaattggaaaatcatatgcagaagag 20160524
Score = 89.7 bits (45), Expect = 3e-15
Identities = 45/45 (100%)
Strand = Plus / Minus
Query: 573 accatcaagaaactgataactgtcaatgctctttctgtttgtaag 617
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20100226 accatcaagaaactgataactgtcaatgctctttctgtttgtaag 20100182
Score = 73.8 bits (37), Expect = 2e-10
Identities = 37/37 (100%)
Strand = Plus / Minus
Query: 616 agatgacacggttggtactgcctggcatggtagaaag 652
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Sbjct: 20082288 agatgacacggttggtactgcctggcatggtagaaag 20082252
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 31,530,548
Number of extensions: 198
Number of successful extensions: 198
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 198
Number of HSP's successfully gapped: 10
Length of query: 1065
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1044
Effective length of database: 2,808,413,156
Effective search space: 2931983334864
Effective search space used: 2931983334864
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)