Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003228
(1651 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001095656.1| exosome component 10 [Bos taurus]. 964 0.0
>ref|NP_001095656.1| exosome component 10 [Bos taurus].
Length = 702
Score = 964 bits (2493), Expect(3) = 0.0
Identities = 474/499 (94%), Positives = 480/499 (96%)
Frame = +1
Query: 79 DGEMVLPGFSDADSFVKFALGSVVAVTKASGGLPQFGDEYDFYRSFPGFQAFCETQGDRL 258
DGEMVLPGF DADSFVKFALG+VVAVTKASGGLPQFGDEYDFYRSFPGFQAFCETQGDRL
Sbjct: 21 DGEMVLPGFPDADSFVKFALGAVVAVTKASGGLPQFGDEYDFYRSFPGFQAFCETQGDRL 80
Query: 259 LQCMSRVMQYHGCRSNIKDRSKVTELEDKFDLLVDTNDVILERVGILLDEASGVNKNQQP 438
LQCMSRVMQYHGCRSNIKDRSKVTELEDKFDLLVDTNDVILERVGILLDEASGVNKNQQP
Sbjct: 81 LQCMSRVMQYHGCRSNIKDRSKVTELEDKFDLLVDTNDVILERVGILLDEASGVNKNQQP 140
Query: 439 VLPAGLQVPKTIVSSWNRKAGEYSKKTKSETFRLLHAKNIIRPQLKFREKIDNSNTPFLP 618
VLPAGLQVP+TIVSSWNRKAGEYSKKTKSETFRLLHAKNIIRPQLKFREKIDNSNTPFLP
Sbjct: 141 VLPAGLQVPQTIVSSWNRKAGEYSKKTKSETFRLLHAKNIIRPQLKFREKIDNSNTPFLP 200
Query: 619 KIFIKPNAQKPLPQALSKXXXXXXXXXXXXXXVPPALADFIHQQRTRQVEQDMFAHPYQY 798
KIFIKPNAQKPLPQALSK VPPALAD IHQQRT+QVEQDMFAHPYQY
Sbjct: 201 KIFIKPNAQKPLPQALSKERRERPQDRPEDLDVPPALADLIHQQRTQQVEQDMFAHPYQY 260
Query: 799 ELDHFTPPESVLQKPEPQLYRPVEETPCHFVSSLDELVELNEKLLKCQEFAVDLEHHSYR 978
ELDHFTPP+SVLQKPEPQLYRPV ETPCHFVS+LDELVELNEKLLKCQEFAVDLEHHSYR
Sbjct: 261 ELDHFTPPDSVLQKPEPQLYRPVGETPCHFVSTLDELVELNEKLLKCQEFAVDLEHHSYR 320
Query: 979 SFLGLTCLMQISTRTEDFIIDTLELRSDMYILNESLTDPAIVKVFHGADSDIEWLQKDFG 1158
SFLGLTCLMQISTRTEDFIIDTLELRSDMYILNESLTDPAIVKVFHGADSDIEWLQKDFG
Sbjct: 321 SFLGLTCLMQISTRTEDFIIDTLELRSDMYILNESLTDPAIVKVFHGADSDIEWLQKDFG 380
Query: 1159 LYVVNMFDTHQAARLLNLGRHSLDHLLKLYCSVESNKQYQLADWRIRPLPEEMLSYARDD 1338
LYVVNMFDTHQAARLLNLGRHSLDHLLKLYCSVESNKQYQLADWRIRPLPEEMLSYARDD
Sbjct: 381 LYVVNMFDTHQAARLLNLGRHSLDHLLKLYCSVESNKQYQLADWRIRPLPEEMLSYARDD 440
Query: 1339 THYLLYIYDKMRLALWERGNEQPAQLQVVWQRSRDICLKKFIKPIFTDESYLDLYRKQKK 1518
THYLLYIYDKMRL LWERGNEQP QLQVVWQRSRDICLKKFIKPIFTDESYL+LYRKQKK
Sbjct: 441 THYLLYIYDKMRLELWERGNEQPTQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKK 500
Query: 1519 HLNTQQLTAFQLLFAWRDK 1575
HLNTQQLTAFQLLFAWRDK
Sbjct: 501 HLNTQQLTAFQLLFAWRDK 519
Score = 33.5 bits (75), Expect(3) = 0.0
Identities = 14/15 (93%), Positives = 15/15 (100%)
Frame = +3
Query: 1572 QTARREDESYGYVLP 1616
+TARREDESYGYVLP
Sbjct: 519 KTARREDESYGYVLP 533
Score = 28.5 bits (62), Expect(3) = 0.0
Identities = 12/12 (100%), Positives = 12/12 (100%)
Frame = +2
Query: 1616 NHMMLKIAEELP 1651
NHMMLKIAEELP
Sbjct: 534 NHMMLKIAEELP 545
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 64,690,645
Number of extensions: 1815047
Number of successful extensions: 8214
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 8193
Number of HSP's successfully gapped: 3
Length of query: 550
Length of database: 17,681,374
Length adjustment: 107
Effective length of query: 443
Effective length of database: 14,140,958
Effective search space: 6264444394
Effective search space used: 6264444394
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003228
(1651 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_535408.2| PREDICTED: similar to exosome component 10 isof... 930 0.0
>ref|XP_535408.2| PREDICTED: similar to exosome component 10 isoform 1 [Canis
familiaris].
Length = 1012
Score = 930 bits (2403), Expect(3) = 0.0
Identities = 454/482 (94%), Positives = 462/482 (95%)
Frame = +1
Query: 130 FALGSVVAVTKASGGLPQFGDEYDFYRSFPGFQAFCETQGDRLLQCMSRVMQYHGCRSNI 309
FALGSVVAVTKASGGLPQFGDEYDFYRSFPGFQAFCETQGDRLL CMSRVMQYHGCRSNI
Sbjct: 164 FALGSVVAVTKASGGLPQFGDEYDFYRSFPGFQAFCETQGDRLLHCMSRVMQYHGCRSNI 223
Query: 310 KDRSKVTELEDKFDLLVDTNDVILERVGILLDEASGVNKNQQPVLPAGLQVPKTIVSSWN 489
KDRSKVTELEDKFDLLVDTNDVILERVGILLDEASGVNKNQQPVLPAGLQVPKTIVSSWN
Sbjct: 224 KDRSKVTELEDKFDLLVDTNDVILERVGILLDEASGVNKNQQPVLPAGLQVPKTIVSSWN 283
Query: 490 RKAGEYSKKTKSETFRLLHAKNIIRPQLKFREKIDNSNTPFLPKIFIKPNAQKPLPQALS 669
RKAGEYSKKTKSETFRLLHAKNI+RPQLKFREKIDNSNTPFLPKIFIKPNAQKPLPQALS
Sbjct: 284 RKAGEYSKKTKSETFRLLHAKNIVRPQLKFREKIDNSNTPFLPKIFIKPNAQKPLPQALS 343
Query: 670 KXXXXXXXXXXXXXXVPPALADFIHQQRTRQVEQDMFAHPYQYELDHFTPPESVLQKPEP 849
K VPPALADFIHQQRT+QVEQDMFAHPYQYELDHFTPPESVLQKP+P
Sbjct: 344 KERRERPQDRPEDLDVPPALADFIHQQRTQQVEQDMFAHPYQYELDHFTPPESVLQKPQP 403
Query: 850 QLYRPVEETPCHFVSSLDELVELNEKLLKCQEFAVDLEHHSYRSFLGLTCLMQISTRTED 1029
QLYRPV ETPCHFVSSLDELVELNEKLL CQEFAVDLEHHSYRSFLGLTCLMQISTRTED
Sbjct: 404 QLYRPVGETPCHFVSSLDELVELNEKLLTCQEFAVDLEHHSYRSFLGLTCLMQISTRTED 463
Query: 1030 FIIDTLELRSDMYILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLN 1209
FI+DTLELRSDMYILNESLTDP IVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLN
Sbjct: 464 FIVDTLELRSDMYILNESLTDPTIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLN 523
Query: 1210 LGRHSLDHLLKLYCSVESNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYDKMRLALWE 1389
LGRHSLDHLLKLYCSVESNKQYQLADWRIRPLPEEML+YARDDTHYLLYIYDKMRL LWE
Sbjct: 524 LGRHSLDHLLKLYCSVESNKQYQLADWRIRPLPEEMLNYARDDTHYLLYIYDKMRLELWE 583
Query: 1390 RGNEQPAQLQVVWQRSRDICLKKFIKPIFTDESYLDLYRKQKKHLNTQQLTAFQLLFAWR 1569
RGNEQP QLQVVWQRSRDICLKKF+KP+FTDESYL+LYRKQKKHLNTQQLTAFQLLFAWR
Sbjct: 584 RGNEQPVQLQVVWQRSRDICLKKFVKPLFTDESYLELYRKQKKHLNTQQLTAFQLLFAWR 643
Query: 1570 DK 1575
DK
Sbjct: 644 DK 645
Score = 33.5 bits (75), Expect(3) = 0.0
Identities = 14/15 (93%), Positives = 15/15 (100%)
Frame = +3
Query: 1572 QTARREDESYGYVLP 1616
+TARREDESYGYVLP
Sbjct: 645 KTARREDESYGYVLP 659
Score = 28.5 bits (62), Expect(3) = 0.0
Identities = 12/12 (100%), Positives = 12/12 (100%)
Frame = +2
Query: 1616 NHMMLKIAEELP 1651
NHMMLKIAEELP
Sbjct: 660 NHMMLKIAEELP 671
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 67,435,601
Number of extensions: 1868736
Number of successful extensions: 8543
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 8495
Number of HSP's successfully gapped: 3
Length of query: 550
Length of database: 18,874,504
Length adjustment: 108
Effective length of query: 442
Effective length of database: 15,274,216
Effective search space: 6751203472
Effective search space used: 6751203472
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003228
(1651 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001001998.1| exosome component 10 isoform 1 [Homo sapiens]. 949 0.0
Alignment gi|NP_002676.1| exosome component 10 isoform 2 [Homo sapiens]. 949 0.0
>ref|NP_001001998.1| exosome component 10 isoform 1 [Homo sapiens].
Length = 885
Score = 949 bits (2454), Expect(3) = 0.0
Identities = 463/499 (92%), Positives = 475/499 (95%)
Frame = +1
Query: 79 DGEMVLPGFSDADSFVKFALGSVVAVTKASGGLPQFGDEYDFYRSFPGFQAFCETQGDRL 258
DGEMVLPGF DADSFVKFALGSVVAVTKASGGLPQFGDEYDFYRSFPGFQAFCETQGDRL
Sbjct: 21 DGEMVLPGFPDADSFVKFALGSVVAVTKASGGLPQFGDEYDFYRSFPGFQAFCETQGDRL 80
Query: 259 LQCMSRVMQYHGCRSNIKDRSKVTELEDKFDLLVDTNDVILERVGILLDEASGVNKNQQP 438
LQCMSRVMQYHGCRSNIKDRSKVTELEDKFDLLVD NDVILERVGILLDEASGVNKNQQP
Sbjct: 81 LQCMSRVMQYHGCRSNIKDRSKVTELEDKFDLLVDANDVILERVGILLDEASGVNKNQQP 140
Query: 439 VLPAGLQVPKTIVSSWNRKAGEYSKKTKSETFRLLHAKNIIRPQLKFREKIDNSNTPFLP 618
VLPAGLQVPKT+VSSWNRKA EY KK KSETFRLLHAKNIIRPQLKFREKIDNSNTPFLP
Sbjct: 141 VLPAGLQVPKTVVSSWNRKAAEYGKKAKSETFRLLHAKNIIRPQLKFREKIDNSNTPFLP 200
Query: 619 KIFIKPNAQKPLPQALSKXXXXXXXXXXXXXXVPPALADFIHQQRTRQVEQDMFAHPYQY 798
KIFIKPNAQKPLPQALSK VPPALADFIHQQRT+QVEQDMFAHPYQY
Sbjct: 201 KIFIKPNAQKPLPQALSKERRERPQDRPEDLDVPPALADFIHQQRTQQVEQDMFAHPYQY 260
Query: 799 ELDHFTPPESVLQKPEPQLYRPVEETPCHFVSSLDELVELNEKLLKCQEFAVDLEHHSYR 978
EL+HFTP ++VLQKP+PQLYRP+EETPCHF+SSLDELVELNEKLL CQEFAVDLEHHSYR
Sbjct: 261 ELNHFTPADAVLQKPQPQLYRPIEETPCHFISSLDELVELNEKLLNCQEFAVDLEHHSYR 320
Query: 979 SFLGLTCLMQISTRTEDFIIDTLELRSDMYILNESLTDPAIVKVFHGADSDIEWLQKDFG 1158
SFLGLTCLMQISTRTEDFIIDTLELRSDMYILNESLTDPAIVKVFHGADSDIEWLQKDFG
Sbjct: 321 SFLGLTCLMQISTRTEDFIIDTLELRSDMYILNESLTDPAIVKVFHGADSDIEWLQKDFG 380
Query: 1159 LYVVNMFDTHQAARLLNLGRHSLDHLLKLYCSVESNKQYQLADWRIRPLPEEMLSYARDD 1338
LYVVNMFDTHQAARLLNLGRHSLDHLLKLYC+V+SNKQYQLADWRIRPLPEEMLSYARDD
Sbjct: 381 LYVVNMFDTHQAARLLNLGRHSLDHLLKLYCNVDSNKQYQLADWRIRPLPEEMLSYARDD 440
Query: 1339 THYLLYIYDKMRLALWERGNEQPAQLQVVWQRSRDICLKKFIKPIFTDESYLDLYRKQKK 1518
THYLLYIYDKMRL +WERGN QP QLQVVWQRSRDICLKKFIKPIFTDESYL+LYRKQKK
Sbjct: 441 THYLLYIYDKMRLEMWERGNGQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKK 500
Query: 1519 HLNTQQLTAFQLLFAWRDK 1575
HLNTQQLTAFQLLFAWRDK
Sbjct: 501 HLNTQQLTAFQLLFAWRDK 519
Score = 33.5 bits (75), Expect(3) = 0.0
Identities = 14/15 (93%), Positives = 15/15 (100%)
Frame = +3
Query: 1572 QTARREDESYGYVLP 1616
+TARREDESYGYVLP
Sbjct: 519 KTARREDESYGYVLP 533
Score = 28.5 bits (62), Expect(3) = 0.0
Identities = 12/12 (100%), Positives = 12/12 (100%)
Frame = +2
Query: 1616 NHMMLKIAEELP 1651
NHMMLKIAEELP
Sbjct: 534 NHMMLKIAEELP 545
>ref|NP_002676.1| exosome component 10 isoform 2 [Homo sapiens].
Length = 860
Score = 949 bits (2454), Expect(3) = 0.0
Identities = 463/499 (92%), Positives = 475/499 (95%)
Frame = +1
Query: 79 DGEMVLPGFSDADSFVKFALGSVVAVTKASGGLPQFGDEYDFYRSFPGFQAFCETQGDRL 258
DGEMVLPGF DADSFVKFALGSVVAVTKASGGLPQFGDEYDFYRSFPGFQAFCETQGDRL
Sbjct: 21 DGEMVLPGFPDADSFVKFALGSVVAVTKASGGLPQFGDEYDFYRSFPGFQAFCETQGDRL 80
Query: 259 LQCMSRVMQYHGCRSNIKDRSKVTELEDKFDLLVDTNDVILERVGILLDEASGVNKNQQP 438
LQCMSRVMQYHGCRSNIKDRSKVTELEDKFDLLVD NDVILERVGILLDEASGVNKNQQP
Sbjct: 81 LQCMSRVMQYHGCRSNIKDRSKVTELEDKFDLLVDANDVILERVGILLDEASGVNKNQQP 140
Query: 439 VLPAGLQVPKTIVSSWNRKAGEYSKKTKSETFRLLHAKNIIRPQLKFREKIDNSNTPFLP 618
VLPAGLQVPKT+VSSWNRKA EY KK KSETFRLLHAKNIIRPQLKFREKIDNSNTPFLP
Sbjct: 141 VLPAGLQVPKTVVSSWNRKAAEYGKKAKSETFRLLHAKNIIRPQLKFREKIDNSNTPFLP 200
Query: 619 KIFIKPNAQKPLPQALSKXXXXXXXXXXXXXXVPPALADFIHQQRTRQVEQDMFAHPYQY 798
KIFIKPNAQKPLPQALSK VPPALADFIHQQRT+QVEQDMFAHPYQY
Sbjct: 201 KIFIKPNAQKPLPQALSKERRERPQDRPEDLDVPPALADFIHQQRTQQVEQDMFAHPYQY 260
Query: 799 ELDHFTPPESVLQKPEPQLYRPVEETPCHFVSSLDELVELNEKLLKCQEFAVDLEHHSYR 978
EL+HFTP ++VLQKP+PQLYRP+EETPCHF+SSLDELVELNEKLL CQEFAVDLEHHSYR
Sbjct: 261 ELNHFTPADAVLQKPQPQLYRPIEETPCHFISSLDELVELNEKLLNCQEFAVDLEHHSYR 320
Query: 979 SFLGLTCLMQISTRTEDFIIDTLELRSDMYILNESLTDPAIVKVFHGADSDIEWLQKDFG 1158
SFLGLTCLMQISTRTEDFIIDTLELRSDMYILNESLTDPAIVKVFHGADSDIEWLQKDFG
Sbjct: 321 SFLGLTCLMQISTRTEDFIIDTLELRSDMYILNESLTDPAIVKVFHGADSDIEWLQKDFG 380
Query: 1159 LYVVNMFDTHQAARLLNLGRHSLDHLLKLYCSVESNKQYQLADWRIRPLPEEMLSYARDD 1338
LYVVNMFDTHQAARLLNLGRHSLDHLLKLYC+V+SNKQYQLADWRIRPLPEEMLSYARDD
Sbjct: 381 LYVVNMFDTHQAARLLNLGRHSLDHLLKLYCNVDSNKQYQLADWRIRPLPEEMLSYARDD 440
Query: 1339 THYLLYIYDKMRLALWERGNEQPAQLQVVWQRSRDICLKKFIKPIFTDESYLDLYRKQKK 1518
THYLLYIYDKMRL +WERGN QP QLQVVWQRSRDICLKKFIKPIFTDESYL+LYRKQKK
Sbjct: 441 THYLLYIYDKMRLEMWERGNGQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKK 500
Query: 1519 HLNTQQLTAFQLLFAWRDK 1575
HLNTQQLTAFQLLFAWRDK
Sbjct: 501 HLNTQQLTAFQLLFAWRDK 519
Score = 33.5 bits (75), Expect(3) = 0.0
Identities = 14/15 (93%), Positives = 15/15 (100%)
Frame = +3
Query: 1572 QTARREDESYGYVLP 1616
+TARREDESYGYVLP
Sbjct: 519 KTARREDESYGYVLP 533
Score = 28.5 bits (62), Expect(3) = 0.0
Identities = 12/12 (100%), Positives = 12/12 (100%)
Frame = +2
Query: 1616 NHMMLKIAEELP 1651
NHMMLKIAEELP
Sbjct: 534 NHMMLKIAEELP 545
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 66,202,404
Number of extensions: 1834016
Number of successful extensions: 8010
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 7956
Number of HSP's successfully gapped: 6
Length of query: 550
Length of database: 18,297,164
Length adjustment: 108
Effective length of query: 442
Effective length of database: 14,737,052
Effective search space: 6513776984
Effective search space used: 6513776984
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003228
(1651 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_057908.2| exosome component 10 [Mus musculus]. 932 0.0
>ref|NP_057908.2| exosome component 10 [Mus musculus].
Length = 887
Score = 932 bits (2409), Expect(3) = 0.0
Identities = 454/499 (90%), Positives = 470/499 (94%)
Frame = +1
Query: 79 DGEMVLPGFSDADSFVKFALGSVVAVTKASGGLPQFGDEYDFYRSFPGFQAFCETQGDRL 258
D EMVLPGF DADSFVKFALGSVVAVTKASGGLPQFGDEYDFYRSFP FQAFCETQGDRL
Sbjct: 21 DAEMVLPGFPDADSFVKFALGSVVAVTKASGGLPQFGDEYDFYRSFPAFQAFCETQGDRL 80
Query: 259 LQCMSRVMQYHGCRSNIKDRSKVTELEDKFDLLVDTNDVILERVGILLDEASGVNKNQQP 438
LQCMSRVMQYHGCRSNIKDRSKVTELEDKFDLLVDTNDVILERVG+LLDEASGVNK+QQP
Sbjct: 81 LQCMSRVMQYHGCRSNIKDRSKVTELEDKFDLLVDTNDVILERVGMLLDEASGVNKHQQP 140
Query: 439 VLPAGLQVPKTIVSSWNRKAGEYSKKTKSETFRLLHAKNIIRPQLKFREKIDNSNTPFLP 618
VLPAGLQVPKTIVSSWNRKAGEY KK KSETFRLLHAKNI+RPQL+FREKIDNSNTPFLP
Sbjct: 141 VLPAGLQVPKTIVSSWNRKAGEYGKKAKSETFRLLHAKNIVRPQLRFREKIDNSNTPFLP 200
Query: 619 KIFIKPNAQKPLPQALSKXXXXXXXXXXXXXXVPPALADFIHQQRTRQVEQDMFAHPYQY 798
KIF+KPNA+KPLP ALSK VPPALADFIHQQRT+QVEQDMFAHPYQY
Sbjct: 201 KIFVKPNARKPLPLALSKERRERPQDRPEDLDVPPALADFIHQQRTQQVEQDMFAHPYQY 260
Query: 799 ELDHFTPPESVLQKPEPQLYRPVEETPCHFVSSLDELVELNEKLLKCQEFAVDLEHHSYR 978
ELDHFTPP+SVLQ+P+PQLYR V ETPCH VSSLDELVELNEKLL CQEFAVDLEHHSYR
Sbjct: 261 ELDHFTPPQSVLQRPKPQLYRAVGETPCHLVSSLDELVELNEKLLGCQEFAVDLEHHSYR 320
Query: 979 SFLGLTCLMQISTRTEDFIIDTLELRSDMYILNESLTDPAIVKVFHGADSDIEWLQKDFG 1158
SFLGLTCLMQISTRTEDFI+DTLELRSDMYILNESLTDPAIVKVFHGADSDIEWLQKDFG
Sbjct: 321 SFLGLTCLMQISTRTEDFIVDTLELRSDMYILNESLTDPAIVKVFHGADSDIEWLQKDFG 380
Query: 1159 LYVVNMFDTHQAARLLNLGRHSLDHLLKLYCSVESNKQYQLADWRIRPLPEEMLSYARDD 1338
LYVVNMFDTHQAARLLNL RHSLDHLL+LYC VESNKQYQLADWRIRPLPEEMLSYARDD
Sbjct: 381 LYVVNMFDTHQAARLLNLARHSLDHLLRLYCGVESNKQYQLADWRIRPLPEEMLSYARDD 440
Query: 1339 THYLLYIYDKMRLALWERGNEQPAQLQVVWQRSRDICLKKFIKPIFTDESYLDLYRKQKK 1518
THYLLYIYD+MRL LWERGN QP QLQVVWQRSRDICLKKF+KPIFTDESYL+LYRKQKK
Sbjct: 441 THYLLYIYDRMRLELWERGNHQPVQLQVVWQRSRDICLKKFVKPIFTDESYLELYRKQKK 500
Query: 1519 HLNTQQLTAFQLLFAWRDK 1575
HLN+QQLTAFQLLFAWRDK
Sbjct: 501 HLNSQQLTAFQLLFAWRDK 519
Score = 33.5 bits (75), Expect(3) = 0.0
Identities = 14/15 (93%), Positives = 15/15 (100%)
Frame = +3
Query: 1572 QTARREDESYGYVLP 1616
+TARREDESYGYVLP
Sbjct: 519 KTARREDESYGYVLP 533
Score = 28.5 bits (62), Expect(3) = 0.0
Identities = 12/12 (100%), Positives = 12/12 (100%)
Frame = +2
Query: 1616 NHMMLKIAEELP 1651
NHMMLKIAEELP
Sbjct: 534 NHMMLKIAEELP 545
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 56,114,827
Number of extensions: 1539018
Number of successful extensions: 6391
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6357
Number of HSP's successfully gapped: 3
Length of query: 550
Length of database: 15,617,559
Length adjustment: 106
Effective length of query: 444
Effective length of database: 12,433,743
Effective search space: 5520581892
Effective search space used: 5520581892
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003228
(1651 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003127631.2| PREDICTED: exosome component 10 isoform 1 [S... 983 0.0
Alignment gi|XP_003356194.1| PREDICTED: exosome component 10 isoform 2 [S... 983 0.0
Alignment gi|XP_003122404.2| PREDICTED: probable exonuclease mut-7 homolo... 49 6e-06
>ref|XP_003127631.2| PREDICTED: exosome component 10 isoform 1 [Sus scrofa].
Length = 886
Score = 983 bits (2541), Expect(3) = 0.0
Identities = 485/499 (97%), Positives = 485/499 (97%)
Frame = +1
Query: 79 DGEMVLPGFSDADSFVKFALGSVVAVTKASGGLPQFGDEYDFYRSFPGFQAFCETQGDRL 258
DGEMVLPGFSDADSFVKFALGSVVAVTKASGGLPQFGDEYDFYRSFPGFQAFCETQGDRL
Sbjct: 21 DGEMVLPGFSDADSFVKFALGSVVAVTKASGGLPQFGDEYDFYRSFPGFQAFCETQGDRL 80
Query: 259 LQCMSRVMQYHGCRSNIKDRSKVTELEDKFDLLVDTNDVILERVGILLDEASGVNKNQQP 438
LQCMSRVMQYHGCRSNIKDRSKVTELEDKFDLLVDTNDVILERVGILLDEASGVNKNQQP
Sbjct: 81 LQCMSRVMQYHGCRSNIKDRSKVTELEDKFDLLVDTNDVILERVGILLDEASGVNKNQQP 140
Query: 439 VLPAGLQVPKTIVSSWNRKAGEYSKKTKSETFRLLHAKNIIRPQLKFREKIDNSNTPFLP 618
VLPAGLQVPKTIVSSWNRKAGEYSKKTKSETFRLLHAKNIIRPQLKFREKIDNSNTPFLP
Sbjct: 141 VLPAGLQVPKTIVSSWNRKAGEYSKKTKSETFRLLHAKNIIRPQLKFREKIDNSNTPFLP 200
Query: 619 KIFIKPNAQKPLPQALSKXXXXXXXXXXXXXXVPPALADFIHQQRTRQVEQDMFAHPYQY 798
KIFIKPNAQKPLPQALSK VPPALADFIHQQRTRQVEQDMFAHPYQY
Sbjct: 201 KIFIKPNAQKPLPQALSKDRRERPQDRPEDLDVPPALADFIHQQRTRQVEQDMFAHPYQY 260
Query: 799 ELDHFTPPESVLQKPEPQLYRPVEETPCHFVSSLDELVELNEKLLKCQEFAVDLEHHSYR 978
ELDHFTPPESVLQKPEPQLYRPVEETPCHFVSSLDELVELNEKLLKCQEFAVDLEHHSYR
Sbjct: 261 ELDHFTPPESVLQKPEPQLYRPVEETPCHFVSSLDELVELNEKLLKCQEFAVDLEHHSYR 320
Query: 979 SFLGLTCLMQISTRTEDFIIDTLELRSDMYILNESLTDPAIVKVFHGADSDIEWLQKDFG 1158
SFLGLTCLMQISTRTEDFIIDTLELRSDMYILNESLTDPAIVKVFHGADSDIEWLQKDFG
Sbjct: 321 SFLGLTCLMQISTRTEDFIIDTLELRSDMYILNESLTDPAIVKVFHGADSDIEWLQKDFG 380
Query: 1159 LYVVNMFDTHQAARLLNLGRHSLDHLLKLYCSVESNKQYQLADWRIRPLPEEMLSYARDD 1338
LYVVNMFDTHQAARLLNLGRHSLDHLLKLYCSVESNKQYQLADWRIRPLPEEMLSYARDD
Sbjct: 381 LYVVNMFDTHQAARLLNLGRHSLDHLLKLYCSVESNKQYQLADWRIRPLPEEMLSYARDD 440
Query: 1339 THYLLYIYDKMRLALWERGNEQPAQLQVVWQRSRDICLKKFIKPIFTDESYLDLYRKQKK 1518
THYLLYIYDKMRLALWERGNEQPAQLQVVWQRSRDICLKKFIKPIFTDESYLDLYRKQKK
Sbjct: 441 THYLLYIYDKMRLALWERGNEQPAQLQVVWQRSRDICLKKFIKPIFTDESYLDLYRKQKK 500
Query: 1519 HLNTQQLTAFQLLFAWRDK 1575
HLNTQQLTAFQLLFAWRDK
Sbjct: 501 HLNTQQLTAFQLLFAWRDK 519
Score = 33.5 bits (75), Expect(3) = 0.0
Identities = 14/15 (93%), Positives = 15/15 (100%)
Frame = +3
Query: 1572 QTARREDESYGYVLP 1616
+TARREDESYGYVLP
Sbjct: 519 KTARREDESYGYVLP 533
Score = 28.5 bits (62), Expect(3) = 0.0
Identities = 12/12 (100%), Positives = 12/12 (100%)
Frame = +2
Query: 1616 NHMMLKIAEELP 1651
NHMMLKIAEELP
Sbjct: 534 NHMMLKIAEELP 545
>ref|XP_003356194.1| PREDICTED: exosome component 10 isoform 2 [Sus scrofa].
Length = 861
Score = 983 bits (2541), Expect(3) = 0.0
Identities = 485/499 (97%), Positives = 485/499 (97%)
Frame = +1
Query: 79 DGEMVLPGFSDADSFVKFALGSVVAVTKASGGLPQFGDEYDFYRSFPGFQAFCETQGDRL 258
DGEMVLPGFSDADSFVKFALGSVVAVTKASGGLPQFGDEYDFYRSFPGFQAFCETQGDRL
Sbjct: 21 DGEMVLPGFSDADSFVKFALGSVVAVTKASGGLPQFGDEYDFYRSFPGFQAFCETQGDRL 80
Query: 259 LQCMSRVMQYHGCRSNIKDRSKVTELEDKFDLLVDTNDVILERVGILLDEASGVNKNQQP 438
LQCMSRVMQYHGCRSNIKDRSKVTELEDKFDLLVDTNDVILERVGILLDEASGVNKNQQP
Sbjct: 81 LQCMSRVMQYHGCRSNIKDRSKVTELEDKFDLLVDTNDVILERVGILLDEASGVNKNQQP 140
Query: 439 VLPAGLQVPKTIVSSWNRKAGEYSKKTKSETFRLLHAKNIIRPQLKFREKIDNSNTPFLP 618
VLPAGLQVPKTIVSSWNRKAGEYSKKTKSETFRLLHAKNIIRPQLKFREKIDNSNTPFLP
Sbjct: 141 VLPAGLQVPKTIVSSWNRKAGEYSKKTKSETFRLLHAKNIIRPQLKFREKIDNSNTPFLP 200
Query: 619 KIFIKPNAQKPLPQALSKXXXXXXXXXXXXXXVPPALADFIHQQRTRQVEQDMFAHPYQY 798
KIFIKPNAQKPLPQALSK VPPALADFIHQQRTRQVEQDMFAHPYQY
Sbjct: 201 KIFIKPNAQKPLPQALSKDRRERPQDRPEDLDVPPALADFIHQQRTRQVEQDMFAHPYQY 260
Query: 799 ELDHFTPPESVLQKPEPQLYRPVEETPCHFVSSLDELVELNEKLLKCQEFAVDLEHHSYR 978
ELDHFTPPESVLQKPEPQLYRPVEETPCHFVSSLDELVELNEKLLKCQEFAVDLEHHSYR
Sbjct: 261 ELDHFTPPESVLQKPEPQLYRPVEETPCHFVSSLDELVELNEKLLKCQEFAVDLEHHSYR 320
Query: 979 SFLGLTCLMQISTRTEDFIIDTLELRSDMYILNESLTDPAIVKVFHGADSDIEWLQKDFG 1158
SFLGLTCLMQISTRTEDFIIDTLELRSDMYILNESLTDPAIVKVFHGADSDIEWLQKDFG
Sbjct: 321 SFLGLTCLMQISTRTEDFIIDTLELRSDMYILNESLTDPAIVKVFHGADSDIEWLQKDFG 380
Query: 1159 LYVVNMFDTHQAARLLNLGRHSLDHLLKLYCSVESNKQYQLADWRIRPLPEEMLSYARDD 1338
LYVVNMFDTHQAARLLNLGRHSLDHLLKLYCSVESNKQYQLADWRIRPLPEEMLSYARDD
Sbjct: 381 LYVVNMFDTHQAARLLNLGRHSLDHLLKLYCSVESNKQYQLADWRIRPLPEEMLSYARDD 440
Query: 1339 THYLLYIYDKMRLALWERGNEQPAQLQVVWQRSRDICLKKFIKPIFTDESYLDLYRKQKK 1518
THYLLYIYDKMRLALWERGNEQPAQLQVVWQRSRDICLKKFIKPIFTDESYLDLYRKQKK
Sbjct: 441 THYLLYIYDKMRLALWERGNEQPAQLQVVWQRSRDICLKKFIKPIFTDESYLDLYRKQKK 500
Query: 1519 HLNTQQLTAFQLLFAWRDK 1575
HLNTQQLTAFQLLFAWRDK
Sbjct: 501 HLNTQQLTAFQLLFAWRDK 519
Score = 33.5 bits (75), Expect(3) = 0.0
Identities = 14/15 (93%), Positives = 15/15 (100%)
Frame = +3
Query: 1572 QTARREDESYGYVLP 1616
+TARREDESYGYVLP
Sbjct: 519 KTARREDESYGYVLP 533
Score = 28.5 bits (62), Expect(3) = 0.0
Identities = 12/12 (100%), Positives = 12/12 (100%)
Frame = +2
Query: 1616 NHMMLKIAEELP 1651
NHMMLKIAEELP
Sbjct: 534 NHMMLKIAEELP 545
>ref|XP_003122404.2| PREDICTED: probable exonuclease mut-7 homolog [Sus scrofa].
Length = 1150
Score = 49.3 bits (116), Expect = 6e-06
Identities = 49/200 (24%), Positives = 85/200 (42%), Gaps = 33/200 (16%)
Frame = +1
Query: 862 PVEETPCHFVSSLDELVELNEKLLKC-QEFAVDLEHHSYRSFLGL-----TCLMQISTRT 1023
P+ F++S ++L +LL+ Q +VDLE +R G+ LMQ++
Sbjct: 649 PIAREDIRFLASWEDLARHEAELLQPGQVVSVDLE---WRPSFGVGGRPQASLMQVAVEG 705
Query: 1024 EDFIIDTLELRSDM---------YILNESLTDPAIVKVFHGADSDIEWLQKDFGLYV--- 1167
F++D +L S +++ L DP+I K+ +G D+ L
Sbjct: 706 RVFLLDLPQLLSPARGQEPQAFSQLVSRLLADPSITKLGYGMAGDLRSLGASCPALAQAQ 765
Query: 1168 ------VNMFDTHQAARLLNL---------GRHSLDHLLKLYCSVESNKQYQLADWRIRP 1302
+++ H+ R+++ G L L++ +K QL++W RP
Sbjct: 766 KQLRGSLDLLQVHKQLRVVDAPAPGVDGAAGPRGLSLLVQQVLGKPLDKTQQLSNWDRRP 825
Query: 1303 LPEEMLSYARDDTHYLLYIY 1362
L EE L YA D + LL +Y
Sbjct: 826 LGEEQLVYAAADAYCLLEVY 845
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 41,656,075
Number of extensions: 1165748
Number of successful extensions: 5426
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 5377
Number of HSP's successfully gapped: 7
Length of query: 550
Length of database: 11,343,932
Length adjustment: 104
Effective length of query: 446
Effective length of database: 8,754,644
Effective search space: 3904571224
Effective search space used: 3904571224
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003228
(1651 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr06 377 e-101
>Sscrofa_Chr06
|| Length = 157765593
Score = 377 bits (190), Expect = e-101
Identities = 193/194 (99%)
Strand = Plus / Minus
Query: 1106 aggtcttccacggggctgattccgacatcgaatggctgcagaaggacttcgggttgtacg 1165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65177521 aggtcttccacggggctgattccgacatcgaatggctgcagaaggacttcgggttgtacg 65177462
Query: 1166 tggtgaacatgtttgacacccaccaggcagcacgccttctcaacttgggtcggcactccc 1225
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 65177461 tggtgaacatgtttgacacccaccaggcagcacgccttctcaacttgggccggcactccc 65177402
Query: 1226 tcgaccacctgctgaagctctactgcagtgtggaatccaacaagcagtatcagctggctg 1285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65177401 tcgaccacctgctgaagctctactgcagtgtggaatccaacaagcagtatcagctggctg 65177342
Query: 1286 actggagaatacgg 1299
||||||||||||||
Sbjct: 65177341 actggagaatacgg 65177328
Score = 305 bits (154), Expect = 4e-80
Identities = 157/158 (99%)
Strand = Plus / Minus
Query: 1298 ggcctctgcctgaggagatgctcagctatgcccgagatgacactcactacctgctctaca 1357
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 65176161 ggcctctgcctgaggagatgctcagctacgcccgagatgacactcactacctgctctaca 65176102
Query: 1358 tctacgacaagatgaggctggcactgtgggagcgaggcaacgagcagcccgcgcagctgc 1417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65176101 tctacgacaagatgaggctggcactgtgggagcgaggcaacgagcagcccgcgcagctgc 65176042
Query: 1418 aggtggtgtggcagcggagcagggacatctgcctcaag 1455
||||||||||||||||||||||||||||||||||||||
Sbjct: 65176041 aggtggtgtggcagcggagcagggacatctgcctcaag 65176004
Score = 295 bits (149), Expect = 4e-77
Identities = 149/149 (100%)
Strand = Plus / Minus
Query: 962 agcaccactcttataggagcttcctggggctcacctgcctgatgcagatttccacccgca 1021
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65178604 agcaccactcttataggagcttcctggggctcacctgcctgatgcagatttccacccgca 65178545
Query: 1022 cagaagacttcatcattgacaccctggagcttcgcagtgacatgtacattctcaacgaga 1081
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65178544 cagaagacttcatcattgacaccctggagcttcgcagtgacatgtacattctcaacgaga 65178485
Query: 1082 gcctcacagacccagctattgtcaaggtc 1110
|||||||||||||||||||||||||||||
Sbjct: 65178484 gcctcacagacccagctattgtcaaggtc 65178456
Score = 291 bits (147), Expect = 6e-76
Identities = 161/168 (95%)
Strand = Plus / Minus
Query: 494 aggcaggagaatatagcnnnnnnncaaaatctgaaactttccggctgcttcatgcaaaaa 553
||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 65182501 aggcaggagaatatagcaaaaaaacaaaatctgaaactttccggctgcttcatgcaaaaa 65182442
Query: 554 acatcatccgacctcagcttaaattccgagagaagatcgacaattccaacacgccatttc 613
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65182441 acatcatccgacctcagcttaaattccgagagaagatcgacaattccaacacgccatttc 65182382
Query: 614 ttcctaaaatcttcatcaagcccaatgctcagaaacctctccctcagg 661
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65182381 ttcctaaaatcttcatcaagcccaatgctcagaaacctctccctcagg 65182334
Score = 283 bits (143), Expect = 2e-73
Identities = 150/151 (99%), Gaps = 1/151 (0%)
Strand = Plus / Minus
Query: 1454 agaaattcatcaaacctatcttcacagacgagtcttaccttgacctgtataggaagcaaa 1513
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65175890 agaaattcatcaaacctatcttcacagacgagtcttaccttgacctgtataggaagcaaa 65175831
Query: 1514 agaagcatctcaacacccagcagttgacagcctttcagctgctgtttgcctggagggac- 1572
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65175830 agaagcatctcaacacccagcagttgacagcctttcagctgctgtttgcctggagggaca 65175771
Query: 1573 aaacagcccggagggaagatgagagttacgg 1603
|||||||||||||||||||||||||||||||
Sbjct: 65175770 aaacagcccggagggaagatgagagttacgg 65175740
Score = 276 bits (139), Expect = 4e-71
Identities = 139/139 (100%)
Strand = Plus / Minus
Query: 128 agttcgctcttgggtcagtggtggcagtcaccaaggcctctgggggccttccacagtttg 187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65185582 agttcgctcttgggtcagtggtggcagtcaccaaggcctctgggggccttccacagtttg 65185523
Query: 188 gcgacgagtatgatttttaccgaagttttcctggcttccaagcattttgtgaaacacaag 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65185522 gcgacgagtatgatttttaccgaagttttcctggcttccaagcattttgtgaaacacaag 65185463
Query: 248 gagacaggttgcttcagtg 266
|||||||||||||||||||
Sbjct: 65185462 gagacaggttgcttcagtg 65185444
Score = 256 bits (129), Expect = 3e-65
Identities = 129/129 (100%)
Strand = Plus / Minus
Query: 1 gccgtgagagccggaaaaatggcgcctcccagtccccgagagcccaaggccccgtcggcg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65187167 gccgtgagagccggaaaaatggcgcctcccagtccccgagagcccaaggccccgtcggcg 65187108
Query: 61 aagagcgcgtccaagtctgatggggagatggtactaccgggcttctcggacgcagatagc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65187107 aagagcgcgtccaagtctgatggggagatggtactaccgggcttctcggacgcagatagc 65187048
Query: 121 ttcgtgaag 129
|||||||||
Sbjct: 65187047 ttcgtgaag 65187039
Score = 250 bits (126), Expect = 2e-63
Identities = 126/126 (100%)
Strand = Plus / Minus
Query: 266 gcatgagcagggtgatgcagtaccacgggtgtcgaagcaacattaaggaccggagtaaag 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65184520 gcatgagcagggtgatgcagtaccacgggtgtcgaagcaacattaaggaccggagtaaag 65184461
Query: 326 tgactgagctggaggacaagtttgacttgctagttgacaccaatgacgttattctggaaa 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65184460 tgactgagctggaggacaagtttgacttgctagttgacaccaatgacgttattctggaaa 65184401
Query: 386 gagtgg 391
||||||
Sbjct: 65184400 gagtgg 65184395
Score = 234 bits (118), Expect = 1e-58
Identities = 118/118 (100%)
Strand = Plus / Minus
Query: 661 gctctctctaaggacaggcgggagcgcccacaggaccggcccgaggacttggatgtgccc 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65182190 gctctctctaaggacaggcgggagcgcccacaggaccggcccgaggacttggatgtgccc 65182131
Query: 721 cctgccctggcggatttcatccatcagcagaggacccggcaggtggagcaggacatgt 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65182130 cctgccctggcggatttcatccatcagcagaggacccggcaggtggagcaggacatgt 65182073
Score = 226 bits (114), Expect = 3e-56
Identities = 114/114 (100%)
Strand = Plus / Minus
Query: 850 cagttatacagacctgtagaagagaccccctgccattttgtgtcctcgctggatgagcta 909
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65179509 cagttatacagacctgtagaagagaccccctgccattttgtgtcctcgctggatgagcta 65179450
Query: 910 gtggaactcaacgaaaagctcctgaagtgccaggaatttgccgtagacttggag 963
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65179449 gtggaactcaacgaaaagctcctgaagtgccaggaatttgccgtagacttggag 65179396
Score = 212 bits (107), Expect = 5e-52
Identities = 107/107 (100%)
Strand = Plus / Minus
Query: 390 gggcattttattggatgaagcatcaggtgtgaataagaatcaacagcccgtcctccctgc 449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65183173 gggcattttattggatgaagcatcaggtgtgaataagaatcaacagcccgtcctccctgc 65183114
Query: 450 aggattgcaggtccccaaaaccatcgtgtccagctggaaccgtaagg 496
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65183113 aggattgcaggtccccaaaaccatcgtgtccagctggaaccgtaagg 65183067
Score = 151 bits (76), Expect = 1e-33
Identities = 76/76 (100%)
Strand = Plus / Minus
Query: 777 gtttgcacatccttatcagtacgaactggatcacttcactccaccagagtcagttcttca 836
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65179793 gtttgcacatccttatcagtacgaactggatcacttcactccaccagagtcagttcttca 65179734
Query: 837 gaagccagaacctcag 852
||||||||||||||||
Sbjct: 65179733 gaagccagaacctcag 65179718
Score = 83.8 bits (42), Expect = 3e-13
Identities = 49/50 (98%), Gaps = 1/50 (2%)
Strand = Plus / Minus
Query: 1603 gatacgtcctgccaa-ccatatgatgctcaagatagctgaagagctaccc 1651
||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 65175563 gatacgtcctgccaaaccatatgatgctcaagatagctgaagagctaccc 65175514
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 42,199,716
Number of extensions: 200
Number of successful extensions: 200
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 199
Number of HSP's successfully gapped: 13
Length of query: 1651
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1629
Effective length of database: 2,808,408,574
Effective search space: 4574897567046
Effective search space used: 4574897567046
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)