Animal-Genome cDNA 20110601C-003228


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-003228
         (1651 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001095656.1| exosome component 10 [Bos taurus].                964   0.0  

>ref|NP_001095656.1| exosome component 10 [Bos taurus].
          Length = 702

 Score =  964 bits (2493), Expect(3) = 0.0
 Identities = 474/499 (94%), Positives = 480/499 (96%)
 Frame = +1

Query: 79   DGEMVLPGFSDADSFVKFALGSVVAVTKASGGLPQFGDEYDFYRSFPGFQAFCETQGDRL 258
            DGEMVLPGF DADSFVKFALG+VVAVTKASGGLPQFGDEYDFYRSFPGFQAFCETQGDRL
Sbjct: 21   DGEMVLPGFPDADSFVKFALGAVVAVTKASGGLPQFGDEYDFYRSFPGFQAFCETQGDRL 80

Query: 259  LQCMSRVMQYHGCRSNIKDRSKVTELEDKFDLLVDTNDVILERVGILLDEASGVNKNQQP 438
            LQCMSRVMQYHGCRSNIKDRSKVTELEDKFDLLVDTNDVILERVGILLDEASGVNKNQQP
Sbjct: 81   LQCMSRVMQYHGCRSNIKDRSKVTELEDKFDLLVDTNDVILERVGILLDEASGVNKNQQP 140

Query: 439  VLPAGLQVPKTIVSSWNRKAGEYSKKTKSETFRLLHAKNIIRPQLKFREKIDNSNTPFLP 618
            VLPAGLQVP+TIVSSWNRKAGEYSKKTKSETFRLLHAKNIIRPQLKFREKIDNSNTPFLP
Sbjct: 141  VLPAGLQVPQTIVSSWNRKAGEYSKKTKSETFRLLHAKNIIRPQLKFREKIDNSNTPFLP 200

Query: 619  KIFIKPNAQKPLPQALSKXXXXXXXXXXXXXXVPPALADFIHQQRTRQVEQDMFAHPYQY 798
            KIFIKPNAQKPLPQALSK              VPPALAD IHQQRT+QVEQDMFAHPYQY
Sbjct: 201  KIFIKPNAQKPLPQALSKERRERPQDRPEDLDVPPALADLIHQQRTQQVEQDMFAHPYQY 260

Query: 799  ELDHFTPPESVLQKPEPQLYRPVEETPCHFVSSLDELVELNEKLLKCQEFAVDLEHHSYR 978
            ELDHFTPP+SVLQKPEPQLYRPV ETPCHFVS+LDELVELNEKLLKCQEFAVDLEHHSYR
Sbjct: 261  ELDHFTPPDSVLQKPEPQLYRPVGETPCHFVSTLDELVELNEKLLKCQEFAVDLEHHSYR 320

Query: 979  SFLGLTCLMQISTRTEDFIIDTLELRSDMYILNESLTDPAIVKVFHGADSDIEWLQKDFG 1158
            SFLGLTCLMQISTRTEDFIIDTLELRSDMYILNESLTDPAIVKVFHGADSDIEWLQKDFG
Sbjct: 321  SFLGLTCLMQISTRTEDFIIDTLELRSDMYILNESLTDPAIVKVFHGADSDIEWLQKDFG 380

Query: 1159 LYVVNMFDTHQAARLLNLGRHSLDHLLKLYCSVESNKQYQLADWRIRPLPEEMLSYARDD 1338
            LYVVNMFDTHQAARLLNLGRHSLDHLLKLYCSVESNKQYQLADWRIRPLPEEMLSYARDD
Sbjct: 381  LYVVNMFDTHQAARLLNLGRHSLDHLLKLYCSVESNKQYQLADWRIRPLPEEMLSYARDD 440

Query: 1339 THYLLYIYDKMRLALWERGNEQPAQLQVVWQRSRDICLKKFIKPIFTDESYLDLYRKQKK 1518
            THYLLYIYDKMRL LWERGNEQP QLQVVWQRSRDICLKKFIKPIFTDESYL+LYRKQKK
Sbjct: 441  THYLLYIYDKMRLELWERGNEQPTQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKK 500

Query: 1519 HLNTQQLTAFQLLFAWRDK 1575
            HLNTQQLTAFQLLFAWRDK
Sbjct: 501  HLNTQQLTAFQLLFAWRDK 519



 Score = 33.5 bits (75), Expect(3) = 0.0
 Identities = 14/15 (93%), Positives = 15/15 (100%)
 Frame = +3

Query: 1572 QTARREDESYGYVLP 1616
            +TARREDESYGYVLP
Sbjct: 519  KTARREDESYGYVLP 533



 Score = 28.5 bits (62), Expect(3) = 0.0
 Identities = 12/12 (100%), Positives = 12/12 (100%)
 Frame = +2

Query: 1616 NHMMLKIAEELP 1651
            NHMMLKIAEELP
Sbjct: 534  NHMMLKIAEELP 545


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 64,690,645
Number of extensions: 1815047
Number of successful extensions: 8214
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 8193
Number of HSP's successfully gapped: 3
Length of query: 550
Length of database: 17,681,374
Length adjustment: 107
Effective length of query: 443
Effective length of database: 14,140,958
Effective search space: 6264444394
Effective search space used: 6264444394
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-003228
         (1651 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_535408.2| PREDICTED: similar to exosome component 10 isof...   930   0.0  

>ref|XP_535408.2| PREDICTED: similar to exosome component 10 isoform 1 [Canis
            familiaris].
          Length = 1012

 Score =  930 bits (2403), Expect(3) = 0.0
 Identities = 454/482 (94%), Positives = 462/482 (95%)
 Frame = +1

Query: 130  FALGSVVAVTKASGGLPQFGDEYDFYRSFPGFQAFCETQGDRLLQCMSRVMQYHGCRSNI 309
            FALGSVVAVTKASGGLPQFGDEYDFYRSFPGFQAFCETQGDRLL CMSRVMQYHGCRSNI
Sbjct: 164  FALGSVVAVTKASGGLPQFGDEYDFYRSFPGFQAFCETQGDRLLHCMSRVMQYHGCRSNI 223

Query: 310  KDRSKVTELEDKFDLLVDTNDVILERVGILLDEASGVNKNQQPVLPAGLQVPKTIVSSWN 489
            KDRSKVTELEDKFDLLVDTNDVILERVGILLDEASGVNKNQQPVLPAGLQVPKTIVSSWN
Sbjct: 224  KDRSKVTELEDKFDLLVDTNDVILERVGILLDEASGVNKNQQPVLPAGLQVPKTIVSSWN 283

Query: 490  RKAGEYSKKTKSETFRLLHAKNIIRPQLKFREKIDNSNTPFLPKIFIKPNAQKPLPQALS 669
            RKAGEYSKKTKSETFRLLHAKNI+RPQLKFREKIDNSNTPFLPKIFIKPNAQKPLPQALS
Sbjct: 284  RKAGEYSKKTKSETFRLLHAKNIVRPQLKFREKIDNSNTPFLPKIFIKPNAQKPLPQALS 343

Query: 670  KXXXXXXXXXXXXXXVPPALADFIHQQRTRQVEQDMFAHPYQYELDHFTPPESVLQKPEP 849
            K              VPPALADFIHQQRT+QVEQDMFAHPYQYELDHFTPPESVLQKP+P
Sbjct: 344  KERRERPQDRPEDLDVPPALADFIHQQRTQQVEQDMFAHPYQYELDHFTPPESVLQKPQP 403

Query: 850  QLYRPVEETPCHFVSSLDELVELNEKLLKCQEFAVDLEHHSYRSFLGLTCLMQISTRTED 1029
            QLYRPV ETPCHFVSSLDELVELNEKLL CQEFAVDLEHHSYRSFLGLTCLMQISTRTED
Sbjct: 404  QLYRPVGETPCHFVSSLDELVELNEKLLTCQEFAVDLEHHSYRSFLGLTCLMQISTRTED 463

Query: 1030 FIIDTLELRSDMYILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLN 1209
            FI+DTLELRSDMYILNESLTDP IVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLN
Sbjct: 464  FIVDTLELRSDMYILNESLTDPTIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLN 523

Query: 1210 LGRHSLDHLLKLYCSVESNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYDKMRLALWE 1389
            LGRHSLDHLLKLYCSVESNKQYQLADWRIRPLPEEML+YARDDTHYLLYIYDKMRL LWE
Sbjct: 524  LGRHSLDHLLKLYCSVESNKQYQLADWRIRPLPEEMLNYARDDTHYLLYIYDKMRLELWE 583

Query: 1390 RGNEQPAQLQVVWQRSRDICLKKFIKPIFTDESYLDLYRKQKKHLNTQQLTAFQLLFAWR 1569
            RGNEQP QLQVVWQRSRDICLKKF+KP+FTDESYL+LYRKQKKHLNTQQLTAFQLLFAWR
Sbjct: 584  RGNEQPVQLQVVWQRSRDICLKKFVKPLFTDESYLELYRKQKKHLNTQQLTAFQLLFAWR 643

Query: 1570 DK 1575
            DK
Sbjct: 644  DK 645



 Score = 33.5 bits (75), Expect(3) = 0.0
 Identities = 14/15 (93%), Positives = 15/15 (100%)
 Frame = +3

Query: 1572 QTARREDESYGYVLP 1616
            +TARREDESYGYVLP
Sbjct: 645  KTARREDESYGYVLP 659



 Score = 28.5 bits (62), Expect(3) = 0.0
 Identities = 12/12 (100%), Positives = 12/12 (100%)
 Frame = +2

Query: 1616 NHMMLKIAEELP 1651
            NHMMLKIAEELP
Sbjct: 660  NHMMLKIAEELP 671


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 67,435,601
Number of extensions: 1868736
Number of successful extensions: 8543
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 8495
Number of HSP's successfully gapped: 3
Length of query: 550
Length of database: 18,874,504
Length adjustment: 108
Effective length of query: 442
Effective length of database: 15,274,216
Effective search space: 6751203472
Effective search space used: 6751203472
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-003228
         (1651 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001001998.1| exosome component 10 isoform 1 [Homo sapiens].    949   0.0  
Alignment   gi|NP_002676.1| exosome component 10 isoform 2 [Homo sapiens].       949   0.0  

>ref|NP_001001998.1| exosome component 10 isoform 1 [Homo sapiens].
          Length = 885

 Score =  949 bits (2454), Expect(3) = 0.0
 Identities = 463/499 (92%), Positives = 475/499 (95%)
 Frame = +1

Query: 79   DGEMVLPGFSDADSFVKFALGSVVAVTKASGGLPQFGDEYDFYRSFPGFQAFCETQGDRL 258
            DGEMVLPGF DADSFVKFALGSVVAVTKASGGLPQFGDEYDFYRSFPGFQAFCETQGDRL
Sbjct: 21   DGEMVLPGFPDADSFVKFALGSVVAVTKASGGLPQFGDEYDFYRSFPGFQAFCETQGDRL 80

Query: 259  LQCMSRVMQYHGCRSNIKDRSKVTELEDKFDLLVDTNDVILERVGILLDEASGVNKNQQP 438
            LQCMSRVMQYHGCRSNIKDRSKVTELEDKFDLLVD NDVILERVGILLDEASGVNKNQQP
Sbjct: 81   LQCMSRVMQYHGCRSNIKDRSKVTELEDKFDLLVDANDVILERVGILLDEASGVNKNQQP 140

Query: 439  VLPAGLQVPKTIVSSWNRKAGEYSKKTKSETFRLLHAKNIIRPQLKFREKIDNSNTPFLP 618
            VLPAGLQVPKT+VSSWNRKA EY KK KSETFRLLHAKNIIRPQLKFREKIDNSNTPFLP
Sbjct: 141  VLPAGLQVPKTVVSSWNRKAAEYGKKAKSETFRLLHAKNIIRPQLKFREKIDNSNTPFLP 200

Query: 619  KIFIKPNAQKPLPQALSKXXXXXXXXXXXXXXVPPALADFIHQQRTRQVEQDMFAHPYQY 798
            KIFIKPNAQKPLPQALSK              VPPALADFIHQQRT+QVEQDMFAHPYQY
Sbjct: 201  KIFIKPNAQKPLPQALSKERRERPQDRPEDLDVPPALADFIHQQRTQQVEQDMFAHPYQY 260

Query: 799  ELDHFTPPESVLQKPEPQLYRPVEETPCHFVSSLDELVELNEKLLKCQEFAVDLEHHSYR 978
            EL+HFTP ++VLQKP+PQLYRP+EETPCHF+SSLDELVELNEKLL CQEFAVDLEHHSYR
Sbjct: 261  ELNHFTPADAVLQKPQPQLYRPIEETPCHFISSLDELVELNEKLLNCQEFAVDLEHHSYR 320

Query: 979  SFLGLTCLMQISTRTEDFIIDTLELRSDMYILNESLTDPAIVKVFHGADSDIEWLQKDFG 1158
            SFLGLTCLMQISTRTEDFIIDTLELRSDMYILNESLTDPAIVKVFHGADSDIEWLQKDFG
Sbjct: 321  SFLGLTCLMQISTRTEDFIIDTLELRSDMYILNESLTDPAIVKVFHGADSDIEWLQKDFG 380

Query: 1159 LYVVNMFDTHQAARLLNLGRHSLDHLLKLYCSVESNKQYQLADWRIRPLPEEMLSYARDD 1338
            LYVVNMFDTHQAARLLNLGRHSLDHLLKLYC+V+SNKQYQLADWRIRPLPEEMLSYARDD
Sbjct: 381  LYVVNMFDTHQAARLLNLGRHSLDHLLKLYCNVDSNKQYQLADWRIRPLPEEMLSYARDD 440

Query: 1339 THYLLYIYDKMRLALWERGNEQPAQLQVVWQRSRDICLKKFIKPIFTDESYLDLYRKQKK 1518
            THYLLYIYDKMRL +WERGN QP QLQVVWQRSRDICLKKFIKPIFTDESYL+LYRKQKK
Sbjct: 441  THYLLYIYDKMRLEMWERGNGQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKK 500

Query: 1519 HLNTQQLTAFQLLFAWRDK 1575
            HLNTQQLTAFQLLFAWRDK
Sbjct: 501  HLNTQQLTAFQLLFAWRDK 519



 Score = 33.5 bits (75), Expect(3) = 0.0
 Identities = 14/15 (93%), Positives = 15/15 (100%)
 Frame = +3

Query: 1572 QTARREDESYGYVLP 1616
            +TARREDESYGYVLP
Sbjct: 519  KTARREDESYGYVLP 533



 Score = 28.5 bits (62), Expect(3) = 0.0
 Identities = 12/12 (100%), Positives = 12/12 (100%)
 Frame = +2

Query: 1616 NHMMLKIAEELP 1651
            NHMMLKIAEELP
Sbjct: 534  NHMMLKIAEELP 545


>ref|NP_002676.1| exosome component 10 isoform 2 [Homo sapiens].
          Length = 860

 Score =  949 bits (2454), Expect(3) = 0.0
 Identities = 463/499 (92%), Positives = 475/499 (95%)
 Frame = +1

Query: 79   DGEMVLPGFSDADSFVKFALGSVVAVTKASGGLPQFGDEYDFYRSFPGFQAFCETQGDRL 258
            DGEMVLPGF DADSFVKFALGSVVAVTKASGGLPQFGDEYDFYRSFPGFQAFCETQGDRL
Sbjct: 21   DGEMVLPGFPDADSFVKFALGSVVAVTKASGGLPQFGDEYDFYRSFPGFQAFCETQGDRL 80

Query: 259  LQCMSRVMQYHGCRSNIKDRSKVTELEDKFDLLVDTNDVILERVGILLDEASGVNKNQQP 438
            LQCMSRVMQYHGCRSNIKDRSKVTELEDKFDLLVD NDVILERVGILLDEASGVNKNQQP
Sbjct: 81   LQCMSRVMQYHGCRSNIKDRSKVTELEDKFDLLVDANDVILERVGILLDEASGVNKNQQP 140

Query: 439  VLPAGLQVPKTIVSSWNRKAGEYSKKTKSETFRLLHAKNIIRPQLKFREKIDNSNTPFLP 618
            VLPAGLQVPKT+VSSWNRKA EY KK KSETFRLLHAKNIIRPQLKFREKIDNSNTPFLP
Sbjct: 141  VLPAGLQVPKTVVSSWNRKAAEYGKKAKSETFRLLHAKNIIRPQLKFREKIDNSNTPFLP 200

Query: 619  KIFIKPNAQKPLPQALSKXXXXXXXXXXXXXXVPPALADFIHQQRTRQVEQDMFAHPYQY 798
            KIFIKPNAQKPLPQALSK              VPPALADFIHQQRT+QVEQDMFAHPYQY
Sbjct: 201  KIFIKPNAQKPLPQALSKERRERPQDRPEDLDVPPALADFIHQQRTQQVEQDMFAHPYQY 260

Query: 799  ELDHFTPPESVLQKPEPQLYRPVEETPCHFVSSLDELVELNEKLLKCQEFAVDLEHHSYR 978
            EL+HFTP ++VLQKP+PQLYRP+EETPCHF+SSLDELVELNEKLL CQEFAVDLEHHSYR
Sbjct: 261  ELNHFTPADAVLQKPQPQLYRPIEETPCHFISSLDELVELNEKLLNCQEFAVDLEHHSYR 320

Query: 979  SFLGLTCLMQISTRTEDFIIDTLELRSDMYILNESLTDPAIVKVFHGADSDIEWLQKDFG 1158
            SFLGLTCLMQISTRTEDFIIDTLELRSDMYILNESLTDPAIVKVFHGADSDIEWLQKDFG
Sbjct: 321  SFLGLTCLMQISTRTEDFIIDTLELRSDMYILNESLTDPAIVKVFHGADSDIEWLQKDFG 380

Query: 1159 LYVVNMFDTHQAARLLNLGRHSLDHLLKLYCSVESNKQYQLADWRIRPLPEEMLSYARDD 1338
            LYVVNMFDTHQAARLLNLGRHSLDHLLKLYC+V+SNKQYQLADWRIRPLPEEMLSYARDD
Sbjct: 381  LYVVNMFDTHQAARLLNLGRHSLDHLLKLYCNVDSNKQYQLADWRIRPLPEEMLSYARDD 440

Query: 1339 THYLLYIYDKMRLALWERGNEQPAQLQVVWQRSRDICLKKFIKPIFTDESYLDLYRKQKK 1518
            THYLLYIYDKMRL +WERGN QP QLQVVWQRSRDICLKKFIKPIFTDESYL+LYRKQKK
Sbjct: 441  THYLLYIYDKMRLEMWERGNGQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKK 500

Query: 1519 HLNTQQLTAFQLLFAWRDK 1575
            HLNTQQLTAFQLLFAWRDK
Sbjct: 501  HLNTQQLTAFQLLFAWRDK 519



 Score = 33.5 bits (75), Expect(3) = 0.0
 Identities = 14/15 (93%), Positives = 15/15 (100%)
 Frame = +3

Query: 1572 QTARREDESYGYVLP 1616
            +TARREDESYGYVLP
Sbjct: 519  KTARREDESYGYVLP 533



 Score = 28.5 bits (62), Expect(3) = 0.0
 Identities = 12/12 (100%), Positives = 12/12 (100%)
 Frame = +2

Query: 1616 NHMMLKIAEELP 1651
            NHMMLKIAEELP
Sbjct: 534  NHMMLKIAEELP 545


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 66,202,404
Number of extensions: 1834016
Number of successful extensions: 8010
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 7956
Number of HSP's successfully gapped: 6
Length of query: 550
Length of database: 18,297,164
Length adjustment: 108
Effective length of query: 442
Effective length of database: 14,737,052
Effective search space: 6513776984
Effective search space used: 6513776984
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-003228
         (1651 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_057908.2| exosome component 10 [Mus musculus].                 932   0.0  

>ref|NP_057908.2| exosome component 10 [Mus musculus].
          Length = 887

 Score =  932 bits (2409), Expect(3) = 0.0
 Identities = 454/499 (90%), Positives = 470/499 (94%)
 Frame = +1

Query: 79   DGEMVLPGFSDADSFVKFALGSVVAVTKASGGLPQFGDEYDFYRSFPGFQAFCETQGDRL 258
            D EMVLPGF DADSFVKFALGSVVAVTKASGGLPQFGDEYDFYRSFP FQAFCETQGDRL
Sbjct: 21   DAEMVLPGFPDADSFVKFALGSVVAVTKASGGLPQFGDEYDFYRSFPAFQAFCETQGDRL 80

Query: 259  LQCMSRVMQYHGCRSNIKDRSKVTELEDKFDLLVDTNDVILERVGILLDEASGVNKNQQP 438
            LQCMSRVMQYHGCRSNIKDRSKVTELEDKFDLLVDTNDVILERVG+LLDEASGVNK+QQP
Sbjct: 81   LQCMSRVMQYHGCRSNIKDRSKVTELEDKFDLLVDTNDVILERVGMLLDEASGVNKHQQP 140

Query: 439  VLPAGLQVPKTIVSSWNRKAGEYSKKTKSETFRLLHAKNIIRPQLKFREKIDNSNTPFLP 618
            VLPAGLQVPKTIVSSWNRKAGEY KK KSETFRLLHAKNI+RPQL+FREKIDNSNTPFLP
Sbjct: 141  VLPAGLQVPKTIVSSWNRKAGEYGKKAKSETFRLLHAKNIVRPQLRFREKIDNSNTPFLP 200

Query: 619  KIFIKPNAQKPLPQALSKXXXXXXXXXXXXXXVPPALADFIHQQRTRQVEQDMFAHPYQY 798
            KIF+KPNA+KPLP ALSK              VPPALADFIHQQRT+QVEQDMFAHPYQY
Sbjct: 201  KIFVKPNARKPLPLALSKERRERPQDRPEDLDVPPALADFIHQQRTQQVEQDMFAHPYQY 260

Query: 799  ELDHFTPPESVLQKPEPQLYRPVEETPCHFVSSLDELVELNEKLLKCQEFAVDLEHHSYR 978
            ELDHFTPP+SVLQ+P+PQLYR V ETPCH VSSLDELVELNEKLL CQEFAVDLEHHSYR
Sbjct: 261  ELDHFTPPQSVLQRPKPQLYRAVGETPCHLVSSLDELVELNEKLLGCQEFAVDLEHHSYR 320

Query: 979  SFLGLTCLMQISTRTEDFIIDTLELRSDMYILNESLTDPAIVKVFHGADSDIEWLQKDFG 1158
            SFLGLTCLMQISTRTEDFI+DTLELRSDMYILNESLTDPAIVKVFHGADSDIEWLQKDFG
Sbjct: 321  SFLGLTCLMQISTRTEDFIVDTLELRSDMYILNESLTDPAIVKVFHGADSDIEWLQKDFG 380

Query: 1159 LYVVNMFDTHQAARLLNLGRHSLDHLLKLYCSVESNKQYQLADWRIRPLPEEMLSYARDD 1338
            LYVVNMFDTHQAARLLNL RHSLDHLL+LYC VESNKQYQLADWRIRPLPEEMLSYARDD
Sbjct: 381  LYVVNMFDTHQAARLLNLARHSLDHLLRLYCGVESNKQYQLADWRIRPLPEEMLSYARDD 440

Query: 1339 THYLLYIYDKMRLALWERGNEQPAQLQVVWQRSRDICLKKFIKPIFTDESYLDLYRKQKK 1518
            THYLLYIYD+MRL LWERGN QP QLQVVWQRSRDICLKKF+KPIFTDESYL+LYRKQKK
Sbjct: 441  THYLLYIYDRMRLELWERGNHQPVQLQVVWQRSRDICLKKFVKPIFTDESYLELYRKQKK 500

Query: 1519 HLNTQQLTAFQLLFAWRDK 1575
            HLN+QQLTAFQLLFAWRDK
Sbjct: 501  HLNSQQLTAFQLLFAWRDK 519



 Score = 33.5 bits (75), Expect(3) = 0.0
 Identities = 14/15 (93%), Positives = 15/15 (100%)
 Frame = +3

Query: 1572 QTARREDESYGYVLP 1616
            +TARREDESYGYVLP
Sbjct: 519  KTARREDESYGYVLP 533



 Score = 28.5 bits (62), Expect(3) = 0.0
 Identities = 12/12 (100%), Positives = 12/12 (100%)
 Frame = +2

Query: 1616 NHMMLKIAEELP 1651
            NHMMLKIAEELP
Sbjct: 534  NHMMLKIAEELP 545


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 56,114,827
Number of extensions: 1539018
Number of successful extensions: 6391
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6357
Number of HSP's successfully gapped: 3
Length of query: 550
Length of database: 15,617,559
Length adjustment: 106
Effective length of query: 444
Effective length of database: 12,433,743
Effective search space: 5520581892
Effective search space used: 5520581892
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-003228
         (1651 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_003127631.2| PREDICTED: exosome component 10 isoform 1 [S...   983   0.0  
Alignment   gi|XP_003356194.1| PREDICTED: exosome component 10 isoform 2 [S...   983   0.0  
Alignment   gi|XP_003122404.2| PREDICTED: probable exonuclease mut-7 homolo...    49   6e-06

>ref|XP_003127631.2| PREDICTED: exosome component 10 isoform 1 [Sus scrofa].
          Length = 886

 Score =  983 bits (2541), Expect(3) = 0.0
 Identities = 485/499 (97%), Positives = 485/499 (97%)
 Frame = +1

Query: 79   DGEMVLPGFSDADSFVKFALGSVVAVTKASGGLPQFGDEYDFYRSFPGFQAFCETQGDRL 258
            DGEMVLPGFSDADSFVKFALGSVVAVTKASGGLPQFGDEYDFYRSFPGFQAFCETQGDRL
Sbjct: 21   DGEMVLPGFSDADSFVKFALGSVVAVTKASGGLPQFGDEYDFYRSFPGFQAFCETQGDRL 80

Query: 259  LQCMSRVMQYHGCRSNIKDRSKVTELEDKFDLLVDTNDVILERVGILLDEASGVNKNQQP 438
            LQCMSRVMQYHGCRSNIKDRSKVTELEDKFDLLVDTNDVILERVGILLDEASGVNKNQQP
Sbjct: 81   LQCMSRVMQYHGCRSNIKDRSKVTELEDKFDLLVDTNDVILERVGILLDEASGVNKNQQP 140

Query: 439  VLPAGLQVPKTIVSSWNRKAGEYSKKTKSETFRLLHAKNIIRPQLKFREKIDNSNTPFLP 618
            VLPAGLQVPKTIVSSWNRKAGEYSKKTKSETFRLLHAKNIIRPQLKFREKIDNSNTPFLP
Sbjct: 141  VLPAGLQVPKTIVSSWNRKAGEYSKKTKSETFRLLHAKNIIRPQLKFREKIDNSNTPFLP 200

Query: 619  KIFIKPNAQKPLPQALSKXXXXXXXXXXXXXXVPPALADFIHQQRTRQVEQDMFAHPYQY 798
            KIFIKPNAQKPLPQALSK              VPPALADFIHQQRTRQVEQDMFAHPYQY
Sbjct: 201  KIFIKPNAQKPLPQALSKDRRERPQDRPEDLDVPPALADFIHQQRTRQVEQDMFAHPYQY 260

Query: 799  ELDHFTPPESVLQKPEPQLYRPVEETPCHFVSSLDELVELNEKLLKCQEFAVDLEHHSYR 978
            ELDHFTPPESVLQKPEPQLYRPVEETPCHFVSSLDELVELNEKLLKCQEFAVDLEHHSYR
Sbjct: 261  ELDHFTPPESVLQKPEPQLYRPVEETPCHFVSSLDELVELNEKLLKCQEFAVDLEHHSYR 320

Query: 979  SFLGLTCLMQISTRTEDFIIDTLELRSDMYILNESLTDPAIVKVFHGADSDIEWLQKDFG 1158
            SFLGLTCLMQISTRTEDFIIDTLELRSDMYILNESLTDPAIVKVFHGADSDIEWLQKDFG
Sbjct: 321  SFLGLTCLMQISTRTEDFIIDTLELRSDMYILNESLTDPAIVKVFHGADSDIEWLQKDFG 380

Query: 1159 LYVVNMFDTHQAARLLNLGRHSLDHLLKLYCSVESNKQYQLADWRIRPLPEEMLSYARDD 1338
            LYVVNMFDTHQAARLLNLGRHSLDHLLKLYCSVESNKQYQLADWRIRPLPEEMLSYARDD
Sbjct: 381  LYVVNMFDTHQAARLLNLGRHSLDHLLKLYCSVESNKQYQLADWRIRPLPEEMLSYARDD 440

Query: 1339 THYLLYIYDKMRLALWERGNEQPAQLQVVWQRSRDICLKKFIKPIFTDESYLDLYRKQKK 1518
            THYLLYIYDKMRLALWERGNEQPAQLQVVWQRSRDICLKKFIKPIFTDESYLDLYRKQKK
Sbjct: 441  THYLLYIYDKMRLALWERGNEQPAQLQVVWQRSRDICLKKFIKPIFTDESYLDLYRKQKK 500

Query: 1519 HLNTQQLTAFQLLFAWRDK 1575
            HLNTQQLTAFQLLFAWRDK
Sbjct: 501  HLNTQQLTAFQLLFAWRDK 519



 Score = 33.5 bits (75), Expect(3) = 0.0
 Identities = 14/15 (93%), Positives = 15/15 (100%)
 Frame = +3

Query: 1572 QTARREDESYGYVLP 1616
            +TARREDESYGYVLP
Sbjct: 519  KTARREDESYGYVLP 533



 Score = 28.5 bits (62), Expect(3) = 0.0
 Identities = 12/12 (100%), Positives = 12/12 (100%)
 Frame = +2

Query: 1616 NHMMLKIAEELP 1651
            NHMMLKIAEELP
Sbjct: 534  NHMMLKIAEELP 545


>ref|XP_003356194.1| PREDICTED: exosome component 10 isoform 2 [Sus scrofa].
          Length = 861

 Score =  983 bits (2541), Expect(3) = 0.0
 Identities = 485/499 (97%), Positives = 485/499 (97%)
 Frame = +1

Query: 79   DGEMVLPGFSDADSFVKFALGSVVAVTKASGGLPQFGDEYDFYRSFPGFQAFCETQGDRL 258
            DGEMVLPGFSDADSFVKFALGSVVAVTKASGGLPQFGDEYDFYRSFPGFQAFCETQGDRL
Sbjct: 21   DGEMVLPGFSDADSFVKFALGSVVAVTKASGGLPQFGDEYDFYRSFPGFQAFCETQGDRL 80

Query: 259  LQCMSRVMQYHGCRSNIKDRSKVTELEDKFDLLVDTNDVILERVGILLDEASGVNKNQQP 438
            LQCMSRVMQYHGCRSNIKDRSKVTELEDKFDLLVDTNDVILERVGILLDEASGVNKNQQP
Sbjct: 81   LQCMSRVMQYHGCRSNIKDRSKVTELEDKFDLLVDTNDVILERVGILLDEASGVNKNQQP 140

Query: 439  VLPAGLQVPKTIVSSWNRKAGEYSKKTKSETFRLLHAKNIIRPQLKFREKIDNSNTPFLP 618
            VLPAGLQVPKTIVSSWNRKAGEYSKKTKSETFRLLHAKNIIRPQLKFREKIDNSNTPFLP
Sbjct: 141  VLPAGLQVPKTIVSSWNRKAGEYSKKTKSETFRLLHAKNIIRPQLKFREKIDNSNTPFLP 200

Query: 619  KIFIKPNAQKPLPQALSKXXXXXXXXXXXXXXVPPALADFIHQQRTRQVEQDMFAHPYQY 798
            KIFIKPNAQKPLPQALSK              VPPALADFIHQQRTRQVEQDMFAHPYQY
Sbjct: 201  KIFIKPNAQKPLPQALSKDRRERPQDRPEDLDVPPALADFIHQQRTRQVEQDMFAHPYQY 260

Query: 799  ELDHFTPPESVLQKPEPQLYRPVEETPCHFVSSLDELVELNEKLLKCQEFAVDLEHHSYR 978
            ELDHFTPPESVLQKPEPQLYRPVEETPCHFVSSLDELVELNEKLLKCQEFAVDLEHHSYR
Sbjct: 261  ELDHFTPPESVLQKPEPQLYRPVEETPCHFVSSLDELVELNEKLLKCQEFAVDLEHHSYR 320

Query: 979  SFLGLTCLMQISTRTEDFIIDTLELRSDMYILNESLTDPAIVKVFHGADSDIEWLQKDFG 1158
            SFLGLTCLMQISTRTEDFIIDTLELRSDMYILNESLTDPAIVKVFHGADSDIEWLQKDFG
Sbjct: 321  SFLGLTCLMQISTRTEDFIIDTLELRSDMYILNESLTDPAIVKVFHGADSDIEWLQKDFG 380

Query: 1159 LYVVNMFDTHQAARLLNLGRHSLDHLLKLYCSVESNKQYQLADWRIRPLPEEMLSYARDD 1338
            LYVVNMFDTHQAARLLNLGRHSLDHLLKLYCSVESNKQYQLADWRIRPLPEEMLSYARDD
Sbjct: 381  LYVVNMFDTHQAARLLNLGRHSLDHLLKLYCSVESNKQYQLADWRIRPLPEEMLSYARDD 440

Query: 1339 THYLLYIYDKMRLALWERGNEQPAQLQVVWQRSRDICLKKFIKPIFTDESYLDLYRKQKK 1518
            THYLLYIYDKMRLALWERGNEQPAQLQVVWQRSRDICLKKFIKPIFTDESYLDLYRKQKK
Sbjct: 441  THYLLYIYDKMRLALWERGNEQPAQLQVVWQRSRDICLKKFIKPIFTDESYLDLYRKQKK 500

Query: 1519 HLNTQQLTAFQLLFAWRDK 1575
            HLNTQQLTAFQLLFAWRDK
Sbjct: 501  HLNTQQLTAFQLLFAWRDK 519



 Score = 33.5 bits (75), Expect(3) = 0.0
 Identities = 14/15 (93%), Positives = 15/15 (100%)
 Frame = +3

Query: 1572 QTARREDESYGYVLP 1616
            +TARREDESYGYVLP
Sbjct: 519  KTARREDESYGYVLP 533



 Score = 28.5 bits (62), Expect(3) = 0.0
 Identities = 12/12 (100%), Positives = 12/12 (100%)
 Frame = +2

Query: 1616 NHMMLKIAEELP 1651
            NHMMLKIAEELP
Sbjct: 534  NHMMLKIAEELP 545


>ref|XP_003122404.2| PREDICTED: probable exonuclease mut-7 homolog [Sus scrofa].
          Length = 1150

 Score = 49.3 bits (116), Expect = 6e-06
 Identities = 49/200 (24%), Positives = 85/200 (42%), Gaps = 33/200 (16%)
 Frame = +1

Query: 862  PVEETPCHFVSSLDELVELNEKLLKC-QEFAVDLEHHSYRSFLGL-----TCLMQISTRT 1023
            P+      F++S ++L     +LL+  Q  +VDLE   +R   G+       LMQ++   
Sbjct: 649  PIAREDIRFLASWEDLARHEAELLQPGQVVSVDLE---WRPSFGVGGRPQASLMQVAVEG 705

Query: 1024 EDFIIDTLELRSDM---------YILNESLTDPAIVKVFHGADSDIEWLQKDFGLYV--- 1167
              F++D  +L S            +++  L DP+I K+ +G   D+  L           
Sbjct: 706  RVFLLDLPQLLSPARGQEPQAFSQLVSRLLADPSITKLGYGMAGDLRSLGASCPALAQAQ 765

Query: 1168 ------VNMFDTHQAARLLNL---------GRHSLDHLLKLYCSVESNKQYQLADWRIRP 1302
                  +++   H+  R+++          G   L  L++       +K  QL++W  RP
Sbjct: 766  KQLRGSLDLLQVHKQLRVVDAPAPGVDGAAGPRGLSLLVQQVLGKPLDKTQQLSNWDRRP 825

Query: 1303 LPEEMLSYARDDTHYLLYIY 1362
            L EE L YA  D + LL +Y
Sbjct: 826  LGEEQLVYAAADAYCLLEVY 845


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 41,656,075
Number of extensions: 1165748
Number of successful extensions: 5426
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 5377
Number of HSP's successfully gapped: 7
Length of query: 550
Length of database: 11,343,932
Length adjustment: 104
Effective length of query: 446
Effective length of database: 8,754,644
Effective search space: 3904571224
Effective search space used: 3904571224
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-003228
         (1651 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr06                                                         377   e-101

>Sscrofa_Chr06 
||          Length = 157765593

 Score =  377 bits (190), Expect = e-101
 Identities = 193/194 (99%)
 Strand = Plus / Minus

                                                                            
Query: 1106     aggtcttccacggggctgattccgacatcgaatggctgcagaaggacttcgggttgtacg 1165
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65177521 aggtcttccacggggctgattccgacatcgaatggctgcagaaggacttcgggttgtacg 65177462

                                                                            
Query: 1166     tggtgaacatgtttgacacccaccaggcagcacgccttctcaacttgggtcggcactccc 1225
                ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 65177461 tggtgaacatgtttgacacccaccaggcagcacgccttctcaacttgggccggcactccc 65177402

                                                                            
Query: 1226     tcgaccacctgctgaagctctactgcagtgtggaatccaacaagcagtatcagctggctg 1285
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65177401 tcgaccacctgctgaagctctactgcagtgtggaatccaacaagcagtatcagctggctg 65177342

                              
Query: 1286     actggagaatacgg 1299
                ||||||||||||||
Sbjct: 65177341 actggagaatacgg 65177328



 Score =  305 bits (154), Expect = 4e-80
 Identities = 157/158 (99%)
 Strand = Plus / Minus

                                                                            
Query: 1298     ggcctctgcctgaggagatgctcagctatgcccgagatgacactcactacctgctctaca 1357
                |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 65176161 ggcctctgcctgaggagatgctcagctacgcccgagatgacactcactacctgctctaca 65176102

                                                                            
Query: 1358     tctacgacaagatgaggctggcactgtgggagcgaggcaacgagcagcccgcgcagctgc 1417
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65176101 tctacgacaagatgaggctggcactgtgggagcgaggcaacgagcagcccgcgcagctgc 65176042

                                                      
Query: 1418     aggtggtgtggcagcggagcagggacatctgcctcaag 1455
                ||||||||||||||||||||||||||||||||||||||
Sbjct: 65176041 aggtggtgtggcagcggagcagggacatctgcctcaag 65176004



 Score =  295 bits (149), Expect = 4e-77
 Identities = 149/149 (100%)
 Strand = Plus / Minus

                                                                            
Query: 962      agcaccactcttataggagcttcctggggctcacctgcctgatgcagatttccacccgca 1021
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65178604 agcaccactcttataggagcttcctggggctcacctgcctgatgcagatttccacccgca 65178545

                                                                            
Query: 1022     cagaagacttcatcattgacaccctggagcttcgcagtgacatgtacattctcaacgaga 1081
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65178544 cagaagacttcatcattgacaccctggagcttcgcagtgacatgtacattctcaacgaga 65178485

                                             
Query: 1082     gcctcacagacccagctattgtcaaggtc 1110
                |||||||||||||||||||||||||||||
Sbjct: 65178484 gcctcacagacccagctattgtcaaggtc 65178456



 Score =  291 bits (147), Expect = 6e-76
 Identities = 161/168 (95%)
 Strand = Plus / Minus

                                                                            
Query: 494      aggcaggagaatatagcnnnnnnncaaaatctgaaactttccggctgcttcatgcaaaaa 553
                |||||||||||||||||       ||||||||||||||||||||||||||||||||||||
Sbjct: 65182501 aggcaggagaatatagcaaaaaaacaaaatctgaaactttccggctgcttcatgcaaaaa 65182442

                                                                            
Query: 554      acatcatccgacctcagcttaaattccgagagaagatcgacaattccaacacgccatttc 613
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65182441 acatcatccgacctcagcttaaattccgagagaagatcgacaattccaacacgccatttc 65182382

                                                                
Query: 614      ttcctaaaatcttcatcaagcccaatgctcagaaacctctccctcagg 661
                ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65182381 ttcctaaaatcttcatcaagcccaatgctcagaaacctctccctcagg 65182334



 Score =  283 bits (143), Expect = 2e-73
 Identities = 150/151 (99%), Gaps = 1/151 (0%)
 Strand = Plus / Minus

                                                                            
Query: 1454     agaaattcatcaaacctatcttcacagacgagtcttaccttgacctgtataggaagcaaa 1513
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65175890 agaaattcatcaaacctatcttcacagacgagtcttaccttgacctgtataggaagcaaa 65175831

                                                                            
Query: 1514     agaagcatctcaacacccagcagttgacagcctttcagctgctgtttgcctggagggac- 1572
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 65175830 agaagcatctcaacacccagcagttgacagcctttcagctgctgtttgcctggagggaca 65175771

                                               
Query: 1573     aaacagcccggagggaagatgagagttacgg 1603
                |||||||||||||||||||||||||||||||
Sbjct: 65175770 aaacagcccggagggaagatgagagttacgg 65175740



 Score =  276 bits (139), Expect = 4e-71
 Identities = 139/139 (100%)
 Strand = Plus / Minus

                                                                            
Query: 128      agttcgctcttgggtcagtggtggcagtcaccaaggcctctgggggccttccacagtttg 187
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65185582 agttcgctcttgggtcagtggtggcagtcaccaaggcctctgggggccttccacagtttg 65185523

                                                                            
Query: 188      gcgacgagtatgatttttaccgaagttttcctggcttccaagcattttgtgaaacacaag 247
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65185522 gcgacgagtatgatttttaccgaagttttcctggcttccaagcattttgtgaaacacaag 65185463

                                   
Query: 248      gagacaggttgcttcagtg 266
                |||||||||||||||||||
Sbjct: 65185462 gagacaggttgcttcagtg 65185444



 Score =  256 bits (129), Expect = 3e-65
 Identities = 129/129 (100%)
 Strand = Plus / Minus

                                                                            
Query: 1        gccgtgagagccggaaaaatggcgcctcccagtccccgagagcccaaggccccgtcggcg 60
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65187167 gccgtgagagccggaaaaatggcgcctcccagtccccgagagcccaaggccccgtcggcg 65187108

                                                                            
Query: 61       aagagcgcgtccaagtctgatggggagatggtactaccgggcttctcggacgcagatagc 120
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65187107 aagagcgcgtccaagtctgatggggagatggtactaccgggcttctcggacgcagatagc 65187048

                         
Query: 121      ttcgtgaag 129
                |||||||||
Sbjct: 65187047 ttcgtgaag 65187039



 Score =  250 bits (126), Expect = 2e-63
 Identities = 126/126 (100%)
 Strand = Plus / Minus

                                                                            
Query: 266      gcatgagcagggtgatgcagtaccacgggtgtcgaagcaacattaaggaccggagtaaag 325
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65184520 gcatgagcagggtgatgcagtaccacgggtgtcgaagcaacattaaggaccggagtaaag 65184461

                                                                            
Query: 326      tgactgagctggaggacaagtttgacttgctagttgacaccaatgacgttattctggaaa 385
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65184460 tgactgagctggaggacaagtttgacttgctagttgacaccaatgacgttattctggaaa 65184401

                      
Query: 386      gagtgg 391
                ||||||
Sbjct: 65184400 gagtgg 65184395



 Score =  234 bits (118), Expect = 1e-58
 Identities = 118/118 (100%)
 Strand = Plus / Minus

                                                                            
Query: 661      gctctctctaaggacaggcgggagcgcccacaggaccggcccgaggacttggatgtgccc 720
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65182190 gctctctctaaggacaggcgggagcgcccacaggaccggcccgaggacttggatgtgccc 65182131

                                                                          
Query: 721      cctgccctggcggatttcatccatcagcagaggacccggcaggtggagcaggacatgt 778
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65182130 cctgccctggcggatttcatccatcagcagaggacccggcaggtggagcaggacatgt 65182073



 Score =  226 bits (114), Expect = 3e-56
 Identities = 114/114 (100%)
 Strand = Plus / Minus

                                                                            
Query: 850      cagttatacagacctgtagaagagaccccctgccattttgtgtcctcgctggatgagcta 909
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65179509 cagttatacagacctgtagaagagaccccctgccattttgtgtcctcgctggatgagcta 65179450

                                                                      
Query: 910      gtggaactcaacgaaaagctcctgaagtgccaggaatttgccgtagacttggag 963
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65179449 gtggaactcaacgaaaagctcctgaagtgccaggaatttgccgtagacttggag 65179396



 Score =  212 bits (107), Expect = 5e-52
 Identities = 107/107 (100%)
 Strand = Plus / Minus

                                                                            
Query: 390      gggcattttattggatgaagcatcaggtgtgaataagaatcaacagcccgtcctccctgc 449
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65183173 gggcattttattggatgaagcatcaggtgtgaataagaatcaacagcccgtcctccctgc 65183114

                                                               
Query: 450      aggattgcaggtccccaaaaccatcgtgtccagctggaaccgtaagg 496
                |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65183113 aggattgcaggtccccaaaaccatcgtgtccagctggaaccgtaagg 65183067



 Score =  151 bits (76), Expect = 1e-33
 Identities = 76/76 (100%)
 Strand = Plus / Minus

                                                                            
Query: 777      gtttgcacatccttatcagtacgaactggatcacttcactccaccagagtcagttcttca 836
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65179793 gtttgcacatccttatcagtacgaactggatcacttcactccaccagagtcagttcttca 65179734

                                
Query: 837      gaagccagaacctcag 852
                ||||||||||||||||
Sbjct: 65179733 gaagccagaacctcag 65179718



 Score = 83.8 bits (42), Expect = 3e-13
 Identities = 49/50 (98%), Gaps = 1/50 (2%)
 Strand = Plus / Minus

                                                                  
Query: 1603     gatacgtcctgccaa-ccatatgatgctcaagatagctgaagagctaccc 1651
                ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 65175563 gatacgtcctgccaaaccatatgatgctcaagatagctgaagagctaccc 65175514


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 42,199,716
Number of extensions: 200
Number of successful extensions: 200
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 199
Number of HSP's successfully gapped: 13
Length of query: 1651
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1629
Effective length of database: 2,808,408,574
Effective search space: 4574897567046
Effective search space used: 4574897567046
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)