Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003244
(1107 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001077274.1| gamma-parvin [Bos taurus]. 437 e-124
Alignment gi|XP_002704532.1| PREDICTED: parvin, gamma-like [Bos taurus]. 372 e-103
Alignment gi|NP_001095769.1| beta-parvin [Bos taurus]. 200 2e-51
Alignment gi|XP_002693145.1| PREDICTED: parvin, alpha-like [Bos taurus]. 192 4e-49
Alignment gi|NP_001092614.1| alpha-parvin [Bos taurus]. 192 6e-49
Alignment gi|XP_594582.4| PREDICTED: parvin, alpha-like [Bos taurus]. 64 2e-10
>ref|NP_001077274.1| gamma-parvin [Bos taurus].
Length = 331
Score = 437 bits (1125), Expect(2) = e-124
Identities = 222/271 (81%), Positives = 238/271 (87%)
Frame = +1
Query: 220 SLYNLLQAPGKVDPPAAETLAQGEKRKYLPPTSRKDPRFEELQKALMEWINTELLPEHIV 399
SLYNLL PGK DPPA E L+QGEKRK+LPPTSR +P+FEELQK LM+WIN ELLPEHIV
Sbjct: 5 SLYNLLHLPGKEDPPAEEELSQGEKRKFLPPTSRNNPKFEELQKVLMDWINAELLPEHIV 64
Query: 400 VRSLEEDMFDGLILHHLFQKLAGLKLNVEEIALTSASQRRKLTVVLEAANKSLQVEESQA 579
VRSLEED+FDGLILHHLFQKL+GLKL+VEEIALT+ASQRRKL VLE+ ++SLQ+EE QA
Sbjct: 65 VRSLEEDIFDGLILHHLFQKLSGLKLDVEEIALTAASQRRKLAAVLESVDQSLQLEEPQA 124
Query: 580 KWSVESIFNKDXXXXXXXXXXXXKRFQPSLPLPANVQVEVITMESTKSGLKSEKSVEQLT 759
KWS+ESIFNKD KRFQP LPLP NVQVEVITME TKSGLKSEKSVEQLT
Sbjct: 125 KWSMESIFNKDLLATLHLLVALAKRFQPDLPLPTNVQVEVITMERTKSGLKSEKSVEQLT 184
Query: 760 ECSTDTDQASKDVFDELFKLAPEKVNAVKEAIMNFVNQNLDRLGLSVQNLDTQFADGVIL 939
EC D DQ SKDVFDELFKLAPEKVNAVKEAI+ FVNQ LDRLGLSVQNLDTQFADGVIL
Sbjct: 185 ECGADKDQPSKDVFDELFKLAPEKVNAVKEAIVKFVNQELDRLGLSVQNLDTQFADGVIL 244
Query: 940 LLLIGQLEGFFLHLKEFYLTPNSPAEMLHNV 1032
LLLIGQLEGFFLHLKEFYLTP+SPAEMLHNV
Sbjct: 245 LLLIGQLEGFFLHLKEFYLTPSSPAEMLHNV 275
Score = 26.2 bits (56), Expect(2) = e-124
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = +3
Query: 1074 YPVSPEDIVNK 1106
YPV+PEDIVNK
Sbjct: 290 YPVNPEDIVNK 300
>ref|XP_002704532.1| PREDICTED: parvin, gamma-like [Bos taurus].
Length = 285
Score = 372 bits (954), Expect = e-103
Identities = 190/245 (77%), Positives = 209/245 (85%)
Frame = +1
Query: 220 SLYNLLQAPGKVDPPAAETLAQGEKRKYLPPTSRKDPRFEELQKALMEWINTELLPEHIV 399
SLYNLL PGK DPPA E L+QGEKRK+LPPTSR +P+FEELQK LM+WIN ELLPEHIV
Sbjct: 23 SLYNLLHLPGKEDPPAEEELSQGEKRKFLPPTSRNNPKFEELQKVLMDWINAELLPEHIV 82
Query: 400 VRSLEEDMFDGLILHHLFQKLAGLKLNVEEIALTSASQRRKLTVVLEAANKSLQVEESQA 579
VRSLEED+FDGLILHHLFQKL+GLKL+VEEIALT+ASQRRKL VLE+ ++SLQ+EE QA
Sbjct: 83 VRSLEEDIFDGLILHHLFQKLSGLKLDVEEIALTAASQRRKLAAVLESVDQSLQLEEPQA 142
Query: 580 KWSVESIFNKDXXXXXXXXXXXXKRFQPSLPLPANVQVEVITMESTKSGLKSEKSVEQLT 759
KWS+ESIFNKD KRFQP LPLP NVQVEVITME TKSGLKSEKSVEQLT
Sbjct: 143 KWSMESIFNKDLLATLHLLVALAKRFQPDLPLPTNVQVEVITMERTKSGLKSEKSVEQLT 202
Query: 760 ECSTDTDQASKDVFDELFKLAPEKVNAVKEAIMNFVNQNLDRLGLSVQNLDTQFADGVIL 939
EC D DQ SKDVFDELFKLAPEKVNAVKEAI+ FVNQ LDRLGLSVQNLDTQ + G+I+
Sbjct: 203 ECGADKDQPSKDVFDELFKLAPEKVNAVKEAIVKFVNQELDRLGLSVQNLDTQSSVGLIV 262
Query: 940 LLLIG 954
+LL G
Sbjct: 263 VLLKG 267
>ref|NP_001095769.1| beta-parvin [Bos taurus].
Length = 365
Score = 200 bits (508), Expect = 2e-51
Identities = 110/268 (41%), Positives = 165/268 (61%), Gaps = 4/268 (1%)
Frame = +1
Query: 241 APGKVDPPAAETLAQGEKRKYLPPTSRKDPRFEELQKALMEWINTELLPEHIVVRSLEED 420
AP +V P + L + E+R + PTSR DPRF+EL K L++WIN L+ E I+V+ LEED
Sbjct: 57 APVEVHPEDS-LLEENEERTVIDPTSRDDPRFKELVKVLIDWINDVLVEERIIVKQLEED 115
Query: 421 MFDGLILHHLFQKLAGLKLNVEEIALTSASQRRKLTVVLEAANKSLQVEESQAKWSVESI 600
++DG +L L +KLA KLNV E+ + Q++KL VLEA + L+ +W+V+SI
Sbjct: 116 LYDGQVLQKLLEKLADCKLNVAEVTQSEIGQKQKLQTVLEAVQELLRPHSRPLQWTVDSI 175
Query: 601 FNKDXXXXXXXXXXXXKRFQPSLPLPANVQVEVITMESTKSGLKSEKSVEQLTECSTDTD 780
K+ F+ + LP +V V+V+ + + L S E+LT T T+
Sbjct: 176 HGKNLVAILHLLVALAMHFRAPIHLPEHVSVQVVVVRKREGLLHSSHVTEELT---TTTE 232
Query: 781 ----QASKDVFDELFKLAPEKVNAVKEAIMNFVNQNLDRLGLSVQNLDTQFADGVILLLL 948
+ +D FD LF AP+K++ VK++++ FVN++L++L L V L+TQFADGV L+LL
Sbjct: 233 MMMGRFERDAFDTLFDHAPDKLSVVKKSLITFVNKHLNKLNLEVTELETQFADGVYLVLL 292
Query: 949 IGQLEGFFLHLKEFYLTPNSPAEMLHNV 1032
+G LE +F+ L FYLTP+S + +HNV
Sbjct: 293 MGLLEDYFVPLHNFYLTPDSFDQKVHNV 320
>ref|XP_002693145.1| PREDICTED: parvin, alpha-like [Bos taurus].
Length = 439
Score = 192 bits (488), Expect = 4e-49
Identities = 115/337 (34%), Positives = 184/337 (54%), Gaps = 2/337 (0%)
Frame = +1
Query: 28 AAATGPRGSEPLTPASRRPLGPPATWEPGTCFGLEPRTTIRDPWPSFPXXXXXXXXXXXX 207
A AT P+ S P P S P PP+ + + G T R
Sbjct: 83 AMATSPQKS-PSVPKSPTPKSPPSRKKDDSFLGKLGGTLAR--------RKKAKEVSELQ 133
Query: 208 XXXXSLYNLLQAPGKVDPPAAET-LAQGEKRKYLPPTSRKDPRFEELQKALMEWINTELL 384
+ NL +P + +T L + E R + P SR DP+ +EL K L++WIN L+
Sbjct: 134 EEGMNAINLPLSPIPFELDPEDTMLEENEVRTMVDPNSRSDPKLQELMKVLIDWINDVLV 193
Query: 385 PEHIVVRSLEEDMFDGLILHHLFQKLAGLKLNVEEIALTSASQRRKLTVVLEAANKSLQV 564
E I+V+ L ED++DG +L LF+KL KLNV E+ + +Q++KL VLE N++L++
Sbjct: 194 GERIIVKDLAEDLYDGQVLQKLFEKLESEKLNVAEVTQSEIAQKQKLQTVLEKINETLKL 253
Query: 565 EESQAKWSVESIFNKDXXXXXXXXXXXXKRFQPSLPLPANVQVEVITMESTKSGLKSEKS 744
KW+V+++ K + F+ + LP +V ++V+ ++ + L+S +
Sbjct: 254 PPRSIKWNVDTVHAKSLVAILHLLVALSQYFRAPIRLPDHVSIQVVVVQKREGILQSRQI 313
Query: 745 VEQLT-ECSTDTDQASKDVFDELFKLAPEKVNAVKEAIMNFVNQNLDRLGLSVQNLDTQF 921
E++T + + +D FD LF AP+K+N VK+ ++ FVN++L++L L V L+TQF
Sbjct: 314 QEEITGNTEALSGRHERDAFDTLFDHAPDKLNVVKKTLITFVNKHLNKLNLEVTELETQF 373
Query: 922 ADGVILLLLIGQLEGFFLHLKEFYLTPNSPAEMLHNV 1032
ADGV L+LL+G LEG+F+ L F+LTP+S + + NV
Sbjct: 374 ADGVYLVLLMGLLEGYFVPLHSFFLTPDSFEQKVLNV 410
>ref|NP_001092614.1| alpha-parvin [Bos taurus].
Length = 372
Score = 192 bits (487), Expect = 6e-49
Identities = 100/264 (37%), Positives = 163/264 (61%), Gaps = 1/264 (0%)
Frame = +1
Query: 244 PGKVDPPAAETLAQGEKRKYLPPTSRKDPRFEELQKALMEWINTELLPEHIVVRSLEEDM 423
P ++DP L + E R + P SR DP+ +EL K L++WIN L+ E I+V+ L ED+
Sbjct: 65 PFELDPEDT-MLEENEVRTMVDPNSRSDPKLQELMKVLIDWINDVLVGERIIVKDLAEDL 123
Query: 424 FDGLILHHLFQKLAGLKLNVEEIALTSASQRRKLTVVLEAANKSLQVEESQAKWSVESIF 603
+DG +L LF+KL KLNV E+ + +Q++KL VLE N++L++ KW+V+++
Sbjct: 124 YDGQVLQKLFEKLESEKLNVAEVTQSEIAQKQKLQTVLEKINETLKLPPRSIKWNVDTVH 183
Query: 604 NKDXXXXXXXXXXXXKRFQPSLPLPANVQVEVITMESTKSGLKSEKSVEQLT-ECSTDTD 780
K + F+ + LP +V ++V+ ++ + L+S + E++T +
Sbjct: 184 AKSLVAILHLLVALSQYFRAPIRLPDHVSIQVVVVQKREGILQSRQIQEEITGNTEALSG 243
Query: 781 QASKDVFDELFKLAPEKVNAVKEAIMNFVNQNLDRLGLSVQNLDTQFADGVILLLLIGQL 960
+ +D FD LF AP+K+N VK+ ++ FVN++L++L L V L+TQFADGV L+LL+G L
Sbjct: 244 RHERDAFDTLFDHAPDKLNVVKKTLITFVNKHLNKLNLEVTELETQFADGVYLVLLMGLL 303
Query: 961 EGFFLHLKEFYLTPNSPAEMLHNV 1032
EG+F+ L F+LTP+S + + NV
Sbjct: 304 EGYFVPLHSFFLTPDSFEQKVLNV 327
>ref|XP_594582.4| PREDICTED: parvin, alpha-like [Bos taurus].
Length = 150
Score = 64.3 bits (155), Expect = 2e-10
Identities = 31/72 (43%), Positives = 45/72 (62%)
Frame = +1
Query: 244 PGKVDPPAAETLAQGEKRKYLPPTSRKDPRFEELQKALMEWINTELLPEHIVVRSLEEDM 423
P ++DP L + E R + P SR DP+ +EL K L++WIN L+ E I+V+ L ED+
Sbjct: 56 PFELDPEDT-MLEENEVRTMVDPNSRSDPKLQELMKVLIDWINDVLVGERIIVKDLAEDL 114
Query: 424 FDGLILHHLFQK 459
+DG +L LF K
Sbjct: 115 YDGQVLQKLFGK 126
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.316 0.133 0.390
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 45,991,124
Number of extensions: 1429181
Number of successful extensions: 9933
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 9749
Number of HSP's successfully gapped: 7
Length of query: 369
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 265
Effective length of database: 14,240,222
Effective search space: 3773658830
Effective search space used: 3773658830
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003244
(1107 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_538335.2| PREDICTED: similar to parvin, gamma [Canis fami... 404 e-114
Alignment gi|XP_538336.2| PREDICTED: similar to parvin, beta isoform b [C... 195 6e-50
Alignment gi|XP_534062.2| PREDICTED: similar to Alpha-parvin (Calponin-li... 182 4e-46
>ref|XP_538335.2| PREDICTED: similar to parvin, gamma [Canis familiaris].
Length = 328
Score = 404 bits (1039), Expect(2) = e-114
Identities = 211/272 (77%), Positives = 225/272 (82%), Gaps = 1/272 (0%)
Frame = +1
Query: 220 SLYNLLQAPGKVDPPAAETLAQGEKRKYLPPTSRKDPRFEELQKALMEWINTELLPEHIV 399
S YNLLQ P PPA E L QGEK+KYLPPTSR DP+FEELQK LMEWIN +LLPEHIV
Sbjct: 5 SFYNLLQRPKVAGPPAEEELPQGEKKKYLPPTSRGDPKFEELQKVLMEWINAKLLPEHIV 64
Query: 400 VRSLEEDMFDGLILHHLFQKLA-GLKLNVEEIALTSASQRRKLTVVLEAANKSLQVEESQ 576
VRSLEED+FDGLILHHLF+K A + V+E+ALT+ SQRRKL VVLEA N SLQV E Q
Sbjct: 65 VRSLEEDIFDGLILHHLFRKEAVRAQAEVKEMALTAPSQRRKLEVVLEAVNGSLQVGEQQ 124
Query: 577 AKWSVESIFNKDXXXXXXXXXXXXKRFQPSLPLPANVQVEVITMESTKSGLKSEKSVEQL 756
KWSV +IF+KD KRFQP LPLP NVQVEVITMESTKSGLKSEKSVEQL
Sbjct: 125 LKWSVATIFSKDLLATLHLLVALAKRFQPDLPLPTNVQVEVITMESTKSGLKSEKSVEQL 184
Query: 757 TECSTDTDQASKDVFDELFKLAPEKVNAVKEAIMNFVNQNLDRLGLSVQNLDTQFADGVI 936
TECST+ DQ +KDVFDELFKLAPEKVN VKEAI+NFVNQ LDRLGLSVQNLD QFADGV
Sbjct: 185 TECSTEKDQPTKDVFDELFKLAPEKVNMVKEAIVNFVNQKLDRLGLSVQNLDNQFADGVF 244
Query: 937 LLLLIGQLEGFFLHLKEFYLTPNSPAEMLHNV 1032
LLLLIGQLEGFFLHLKEFYLTP SPAEMLHNV
Sbjct: 245 LLLLIGQLEGFFLHLKEFYLTPTSPAEMLHNV 276
Score = 26.2 bits (56), Expect(2) = e-114
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = +3
Query: 1074 YPVSPEDIVNK 1106
YPV+PEDIVNK
Sbjct: 291 YPVNPEDIVNK 301
>ref|XP_538336.2| PREDICTED: similar to parvin, beta isoform b [Canis familiaris].
Length = 393
Score = 195 bits (496), Expect = 6e-50
Identities = 108/273 (39%), Positives = 165/273 (60%), Gaps = 5/273 (1%)
Frame = +1
Query: 229 NLLQAPGKVDPPAAETLAQ-GEKRKYLPPTSRKDPRFEELQKALMEWINTELLPEHIVVR 405
N +P D +TL + E+R + PTS+ DP+F+EL K L++WIN L+ E I+V+
Sbjct: 79 NSPMSPASADVHPEDTLLEENEERTMIDPTSKDDPKFKELVKVLIDWINDVLVEERIIVK 138
Query: 406 SLEEDMFDGLILHHLFQKLAGLKLNVEEIALTSASQRRKLTVVLEAANKSLQVEESQAKW 585
LEED++DG +L L +KLA KLNV E+ + Q++KL VLEA + L+ +W
Sbjct: 139 QLEEDLYDGQVLQKLLEKLADCKLNVAEVTQSKIGQKQKLQTVLEAVHGLLRPHGWALQW 198
Query: 586 SVESIFNKDXXXXXXXXXXXXKRFQPSLPLPANVQVEVITMESTKSGLKSEKSVEQLTEC 765
+V+SI K+ F+ + LP +V V+V+ + + L S E+LT
Sbjct: 199 TVDSIHGKNLVAILHLLVALAMHFRAPIRLPEHVSVQVVVVRKREGLLHSSHVTEELT-- 256
Query: 766 STDTD----QASKDVFDELFKLAPEKVNAVKEAIMNFVNQNLDRLGLSVQNLDTQFADGV 933
T T+ + +D FD LF AP+K++ VK++++ FVN++L++L L V L+TQFADGV
Sbjct: 257 -TTTEMMMGRFERDAFDTLFDHAPDKLSVVKKSLITFVNKHLNKLNLEVTELETQFADGV 315
Query: 934 ILLLLIGQLEGFFLHLKEFYLTPNSPAEMLHNV 1032
L+LL+G LE +F+ L FYLTP+S + +HNV
Sbjct: 316 YLVLLMGLLEDYFVPLHNFYLTPDSFDQKVHNV 348
>ref|XP_534062.2| PREDICTED: similar to Alpha-parvin (Calponin-like integrin-linked
kinase binding protein) (CH-ILKBP) [Canis familiaris].
Length = 411
Score = 182 bits (463), Expect = 4e-46
Identities = 103/293 (35%), Positives = 165/293 (56%), Gaps = 30/293 (10%)
Frame = +1
Query: 244 PGKVDPPAAETLAQGEKRKYLPPTSRKDPRFEELQKALMEWINTELLPEHIVVRSLEEDM 423
P ++DP L + E R + P SR DP+ +EL K L++WIN L+ E I+V+ L ED+
Sbjct: 24 PFELDPEDT-MLEENEVRTMVDPNSRSDPKLQELMKVLIDWINDVLVGERIIVKDLAEDL 82
Query: 424 FDGLILHHLFQKLAGLKLNVEEIALTSASQRRKLTVVLEAANKSLQVEESQAKWSVESIF 603
+DG +L LF+KL KLNV E+ + +Q++KL VLE N++L++ KW+V+S+
Sbjct: 83 YDGQVLQKLFEKLESEKLNVAEVTQSEIAQKQKLQTVLEKINETLKLPPRSIKWNVDSVH 142
Query: 604 NKDXXXXXXXXXXXXKRFQPSLPLPANVQVEVITMESTKSGLKSEKSVEQLT------EC 765
K + F+ + LP +V ++V+ ++ + L+S + E++T
Sbjct: 143 AKSLVAILHLLVALSQYFRAPIRLPDHVSIQVVVVQKREGILQSRQIQEEITGNTEYVNT 202
Query: 766 STDTDQAS------------------------KDVFDELFKLAPEKVNAVKEAIMNFVNQ 873
+D +S +D FD LF AP+K+N VK+ ++ FVN+
Sbjct: 203 IVASDSSSLLEAVLSLFPYHTSYPLPFPRTLQRDAFDTLFDHAPDKLNVVKKTLITFVNK 262
Query: 874 NLDRLGLSVQNLDTQFADGVILLLLIGQLEGFFLHLKEFYLTPNSPAEMLHNV 1032
+L++L L V L+TQFADGV L+LL+G LEG+F+ L F+LTP+S + + NV
Sbjct: 263 HLNKLNLEVTELETQFADGVYLVLLMGLLEGYFVPLHSFFLTPDSFEQKVLNV 315
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.316 0.133 0.390
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 47,960,020
Number of extensions: 1468855
Number of successful extensions: 10199
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 9968
Number of HSP's successfully gapped: 5
Length of query: 369
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 265
Effective length of database: 15,407,560
Effective search space: 4083003400
Effective search space used: 4083003400
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003244
(1107 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001131078.1| gamma-parvin [Homo sapiens]. 424 e-119
Alignment gi|NP_001131077.1| gamma-parvin [Homo sapiens]. 424 e-119
Alignment gi|NP_071424.1| gamma-parvin [Homo sapiens]. 424 e-119
Alignment gi|NP_001230314.1| beta-parvin isoform c [Homo sapiens]. 200 2e-51
Alignment gi|NP_037459.2| beta-parvin isoform b [Homo sapiens]. 200 2e-51
Alignment gi|NP_001003828.1| beta-parvin isoform a [Homo sapiens]. 200 2e-51
Alignment gi|NP_060692.2| alpha-parvin [Homo sapiens]. 193 2e-49
Alignment gi|NP_001230315.1| beta-parvin isoform d [Homo sapiens]. 165 6e-41
>ref|NP_001131078.1| gamma-parvin [Homo sapiens].
Length = 331
Score = 424 bits (1090), Expect(2) = e-119
Identities = 218/270 (80%), Positives = 233/270 (86%)
Frame = +1
Query: 223 LYNLLQAPGKVDPPAAETLAQGEKRKYLPPTSRKDPRFEELQKALMEWINTELLPEHIVV 402
LY+LLQ P V+PPA E L++G K+KYLPPTSRKDP+FEELQK LMEWIN LLPEHIVV
Sbjct: 6 LYDLLQLPKGVEPPAEEELSKGGKKKYLPPTSRKDPKFEELQKVLMEWINATLLPEHIVV 65
Query: 403 RSLEEDMFDGLILHHLFQKLAGLKLNVEEIALTSASQRRKLTVVLEAANKSLQVEESQAK 582
RSLEEDMFDGLILHHLFQ+LA LKL E+IALT+ SQ+ KLTVVLEA N+SLQ+EE QAK
Sbjct: 66 RSLEEDMFDGLILHHLFQRLAALKLEAEDIALTATSQKHKLTVVLEAVNRSLQLEEWQAK 125
Query: 583 WSVESIFNKDXXXXXXXXXXXXKRFQPSLPLPANVQVEVITMESTKSGLKSEKSVEQLTE 762
WSVESIFNKD KRFQP L LP NVQVEVIT+ESTKSGLKSEK VEQLTE
Sbjct: 126 WSVESIFNKDLLSTLHLLVALAKRFQPDLSLPTNVQVEVITIESTKSGLKSEKLVEQLTE 185
Query: 763 CSTDTDQASKDVFDELFKLAPEKVNAVKEAIMNFVNQNLDRLGLSVQNLDTQFADGVILL 942
STD D+ KDVFDELFKLAPEKVNAVKEAI+NFVNQ LDRLGLSVQNLDTQFADGVILL
Sbjct: 186 YSTDKDEPPKDVFDELFKLAPEKVNAVKEAIVNFVNQKLDRLGLSVQNLDTQFADGVILL 245
Query: 943 LLIGQLEGFFLHLKEFYLTPNSPAEMLHNV 1032
LLIGQLEGFFLHLKEFYLTPNSPAEMLHNV
Sbjct: 246 LLIGQLEGFFLHLKEFYLTPNSPAEMLHNV 275
Score = 24.6 bits (52), Expect(2) = e-119
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = +3
Query: 1077 PVSPEDIVNK 1106
PVSPEDIVNK
Sbjct: 291 PVSPEDIVNK 300
>ref|NP_001131077.1| gamma-parvin [Homo sapiens].
Length = 331
Score = 424 bits (1090), Expect(2) = e-119
Identities = 218/270 (80%), Positives = 233/270 (86%)
Frame = +1
Query: 223 LYNLLQAPGKVDPPAAETLAQGEKRKYLPPTSRKDPRFEELQKALMEWINTELLPEHIVV 402
LY+LLQ P V+PPA E L++G K+KYLPPTSRKDP+FEELQK LMEWIN LLPEHIVV
Sbjct: 6 LYDLLQLPKGVEPPAEEELSKGGKKKYLPPTSRKDPKFEELQKVLMEWINATLLPEHIVV 65
Query: 403 RSLEEDMFDGLILHHLFQKLAGLKLNVEEIALTSASQRRKLTVVLEAANKSLQVEESQAK 582
RSLEEDMFDGLILHHLFQ+LA LKL E+IALT+ SQ+ KLTVVLEA N+SLQ+EE QAK
Sbjct: 66 RSLEEDMFDGLILHHLFQRLAALKLEAEDIALTATSQKHKLTVVLEAVNRSLQLEEWQAK 125
Query: 583 WSVESIFNKDXXXXXXXXXXXXKRFQPSLPLPANVQVEVITMESTKSGLKSEKSVEQLTE 762
WSVESIFNKD KRFQP L LP NVQVEVIT+ESTKSGLKSEK VEQLTE
Sbjct: 126 WSVESIFNKDLLSTLHLLVALAKRFQPDLSLPTNVQVEVITIESTKSGLKSEKLVEQLTE 185
Query: 763 CSTDTDQASKDVFDELFKLAPEKVNAVKEAIMNFVNQNLDRLGLSVQNLDTQFADGVILL 942
STD D+ KDVFDELFKLAPEKVNAVKEAI+NFVNQ LDRLGLSVQNLDTQFADGVILL
Sbjct: 186 YSTDKDEPPKDVFDELFKLAPEKVNAVKEAIVNFVNQKLDRLGLSVQNLDTQFADGVILL 245
Query: 943 LLIGQLEGFFLHLKEFYLTPNSPAEMLHNV 1032
LLIGQLEGFFLHLKEFYLTPNSPAEMLHNV
Sbjct: 246 LLIGQLEGFFLHLKEFYLTPNSPAEMLHNV 275
Score = 24.6 bits (52), Expect(2) = e-119
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = +3
Query: 1077 PVSPEDIVNK 1106
PVSPEDIVNK
Sbjct: 291 PVSPEDIVNK 300
>ref|NP_071424.1| gamma-parvin [Homo sapiens].
Length = 331
Score = 424 bits (1090), Expect(2) = e-119
Identities = 218/270 (80%), Positives = 233/270 (86%)
Frame = +1
Query: 223 LYNLLQAPGKVDPPAAETLAQGEKRKYLPPTSRKDPRFEELQKALMEWINTELLPEHIVV 402
LY+LLQ P V+PPA E L++G K+KYLPPTSRKDP+FEELQK LMEWIN LLPEHIVV
Sbjct: 6 LYDLLQLPKGVEPPAEEELSKGGKKKYLPPTSRKDPKFEELQKVLMEWINATLLPEHIVV 65
Query: 403 RSLEEDMFDGLILHHLFQKLAGLKLNVEEIALTSASQRRKLTVVLEAANKSLQVEESQAK 582
RSLEEDMFDGLILHHLFQ+LA LKL E+IALT+ SQ+ KLTVVLEA N+SLQ+EE QAK
Sbjct: 66 RSLEEDMFDGLILHHLFQRLAALKLEAEDIALTATSQKHKLTVVLEAVNRSLQLEEWQAK 125
Query: 583 WSVESIFNKDXXXXXXXXXXXXKRFQPSLPLPANVQVEVITMESTKSGLKSEKSVEQLTE 762
WSVESIFNKD KRFQP L LP NVQVEVIT+ESTKSGLKSEK VEQLTE
Sbjct: 126 WSVESIFNKDLLSTLHLLVALAKRFQPDLSLPTNVQVEVITIESTKSGLKSEKLVEQLTE 185
Query: 763 CSTDTDQASKDVFDELFKLAPEKVNAVKEAIMNFVNQNLDRLGLSVQNLDTQFADGVILL 942
STD D+ KDVFDELFKLAPEKVNAVKEAI+NFVNQ LDRLGLSVQNLDTQFADGVILL
Sbjct: 186 YSTDKDEPPKDVFDELFKLAPEKVNAVKEAIVNFVNQKLDRLGLSVQNLDTQFADGVILL 245
Query: 943 LLIGQLEGFFLHLKEFYLTPNSPAEMLHNV 1032
LLIGQLEGFFLHLKEFYLTPNSPAEMLHNV
Sbjct: 246 LLIGQLEGFFLHLKEFYLTPNSPAEMLHNV 275
Score = 24.6 bits (52), Expect(2) = e-119
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = +3
Query: 1077 PVSPEDIVNK 1106
PVSPEDIVNK
Sbjct: 291 PVSPEDIVNK 300
>ref|NP_001230314.1| beta-parvin isoform c [Homo sapiens].
Length = 327
Score = 200 bits (509), Expect = 2e-51
Identities = 111/273 (40%), Positives = 167/273 (61%), Gaps = 5/273 (1%)
Frame = +1
Query: 229 NLLQAPGKVDPPAAET-LAQGEKRKYLPPTSRKDPRFEELQKALMEWINTELLPEHIVVR 405
N +P VD +T L + E+R + PTS++DP+F+EL K L++WIN L+ E I+V+
Sbjct: 13 NSPMSPALVDVHPEDTQLEENEERTMIDPTSKEDPKFKELVKVLLDWINDVLVEERIIVK 72
Query: 406 SLEEDMFDGLILHHLFQKLAGLKLNVEEIALTSASQRRKLTVVLEAANKSLQVEESQAKW 585
LEED++DG +L L +KLAG KLNV E+ + Q++KL VLEA + L+ +W
Sbjct: 73 QLEEDLYDGQVLQKLLEKLAGCKLNVAEVTQSEIGQKQKLQTVLEAVHDLLRPRGWALRW 132
Query: 586 SVESIFNKDXXXXXXXXXXXXKRFQPSLPLPANVQVEVITMESTKSGLKSEKSVEQLTEC 765
SV+SI K+ F+ + LP +V V+V+ + + L S E+LT
Sbjct: 133 SVDSIHGKNLVAILHLLVSLAMHFRAPIRLPEHVTVQVVVVRKREGLLHSSHISEELT-- 190
Query: 766 STDTD----QASKDVFDELFKLAPEKVNAVKEAIMNFVNQNLDRLGLSVQNLDTQFADGV 933
T T+ + +D FD LF AP+K++ VK++++ FVN++L++L L V L+TQFADGV
Sbjct: 191 -TTTEMMMGRFERDAFDTLFDHAPDKLSVVKKSLITFVNKHLNKLNLEVTELETQFADGV 249
Query: 934 ILLLLIGQLEGFFLHLKEFYLTPNSPAEMLHNV 1032
L+LL+G LE +F+ L FYLTP S + +HNV
Sbjct: 250 YLVLLMGLLEDYFVPLHHFYLTPESFDQKVHNV 282
>ref|NP_037459.2| beta-parvin isoform b [Homo sapiens].
Length = 364
Score = 200 bits (509), Expect = 2e-51
Identities = 111/273 (40%), Positives = 167/273 (61%), Gaps = 5/273 (1%)
Frame = +1
Query: 229 NLLQAPGKVDPPAAET-LAQGEKRKYLPPTSRKDPRFEELQKALMEWINTELLPEHIVVR 405
N +P VD +T L + E+R + PTS++DP+F+EL K L++WIN L+ E I+V+
Sbjct: 50 NSPMSPALVDVHPEDTQLEENEERTMIDPTSKEDPKFKELVKVLLDWINDVLVEERIIVK 109
Query: 406 SLEEDMFDGLILHHLFQKLAGLKLNVEEIALTSASQRRKLTVVLEAANKSLQVEESQAKW 585
LEED++DG +L L +KLAG KLNV E+ + Q++KL VLEA + L+ +W
Sbjct: 110 QLEEDLYDGQVLQKLLEKLAGCKLNVAEVTQSEIGQKQKLQTVLEAVHDLLRPRGWALRW 169
Query: 586 SVESIFNKDXXXXXXXXXXXXKRFQPSLPLPANVQVEVITMESTKSGLKSEKSVEQLTEC 765
SV+SI K+ F+ + LP +V V+V+ + + L S E+LT
Sbjct: 170 SVDSIHGKNLVAILHLLVSLAMHFRAPIRLPEHVTVQVVVVRKREGLLHSSHISEELT-- 227
Query: 766 STDTD----QASKDVFDELFKLAPEKVNAVKEAIMNFVNQNLDRLGLSVQNLDTQFADGV 933
T T+ + +D FD LF AP+K++ VK++++ FVN++L++L L V L+TQFADGV
Sbjct: 228 -TTTEMMMGRFERDAFDTLFDHAPDKLSVVKKSLITFVNKHLNKLNLEVTELETQFADGV 286
Query: 934 ILLLLIGQLEGFFLHLKEFYLTPNSPAEMLHNV 1032
L+LL+G LE +F+ L FYLTP S + +HNV
Sbjct: 287 YLVLLMGLLEDYFVPLHHFYLTPESFDQKVHNV 319
>ref|NP_001003828.1| beta-parvin isoform a [Homo sapiens].
Length = 397
Score = 200 bits (509), Expect = 2e-51
Identities = 111/273 (40%), Positives = 167/273 (61%), Gaps = 5/273 (1%)
Frame = +1
Query: 229 NLLQAPGKVDPPAAET-LAQGEKRKYLPPTSRKDPRFEELQKALMEWINTELLPEHIVVR 405
N +P VD +T L + E+R + PTS++DP+F+EL K L++WIN L+ E I+V+
Sbjct: 83 NSPMSPALVDVHPEDTQLEENEERTMIDPTSKEDPKFKELVKVLLDWINDVLVEERIIVK 142
Query: 406 SLEEDMFDGLILHHLFQKLAGLKLNVEEIALTSASQRRKLTVVLEAANKSLQVEESQAKW 585
LEED++DG +L L +KLAG KLNV E+ + Q++KL VLEA + L+ +W
Sbjct: 143 QLEEDLYDGQVLQKLLEKLAGCKLNVAEVTQSEIGQKQKLQTVLEAVHDLLRPRGWALRW 202
Query: 586 SVESIFNKDXXXXXXXXXXXXKRFQPSLPLPANVQVEVITMESTKSGLKSEKSVEQLTEC 765
SV+SI K+ F+ + LP +V V+V+ + + L S E+LT
Sbjct: 203 SVDSIHGKNLVAILHLLVSLAMHFRAPIRLPEHVTVQVVVVRKREGLLHSSHISEELT-- 260
Query: 766 STDTD----QASKDVFDELFKLAPEKVNAVKEAIMNFVNQNLDRLGLSVQNLDTQFADGV 933
T T+ + +D FD LF AP+K++ VK++++ FVN++L++L L V L+TQFADGV
Sbjct: 261 -TTTEMMMGRFERDAFDTLFDHAPDKLSVVKKSLITFVNKHLNKLNLEVTELETQFADGV 319
Query: 934 ILLLLIGQLEGFFLHLKEFYLTPNSPAEMLHNV 1032
L+LL+G LE +F+ L FYLTP S + +HNV
Sbjct: 320 YLVLLMGLLEDYFVPLHHFYLTPESFDQKVHNV 352
>ref|NP_060692.2| alpha-parvin [Homo sapiens].
Length = 412
Score = 193 bits (491), Expect = 2e-49
Identities = 116/337 (34%), Positives = 184/337 (54%), Gaps = 2/337 (0%)
Frame = +1
Query: 28 AAATGPRGSEPLTPASRRPLGPPATWEPGTCFGLEPRTTIRDPWPSFPXXXXXXXXXXXX 207
A AT P+ S P P S P PP+ + + G T R
Sbjct: 40 AMATSPQKS-PSVPKSPTPKSPPSRKKDDSFLGKLGGTLAR--------RKKAKEVSELQ 90
Query: 208 XXXXSLYNLLQAPGKVDPPAAET-LAQGEKRKYLPPTSRKDPRFEELQKALMEWINTELL 384
+ NL +P + +T L + E R + P SR DP+ +EL K L++WIN L+
Sbjct: 91 EEGMNAINLPLSPIPFELDPEDTMLEENEVRTMVDPNSRSDPKLQELMKVLIDWINDVLV 150
Query: 385 PEHIVVRSLEEDMFDGLILHHLFQKLAGLKLNVEEIALTSASQRRKLTVVLEAANKSLQV 564
E I+V+ L ED++DG +L LF+KL KLNV E+ + +Q++KL VLE N++L++
Sbjct: 151 GERIIVKDLAEDLYDGQVLQKLFEKLESEKLNVAEVTQSEIAQKQKLQTVLEKINETLKL 210
Query: 565 EESQAKWSVESIFNKDXXXXXXXXXXXXKRFQPSLPLPANVQVEVITMESTKSGLKSEKS 744
KW+V+S+ K + F+ + LP +V ++V+ ++ + L+S +
Sbjct: 211 PPRSIKWNVDSVHAKSLVAILHLLVALSQYFRAPIRLPDHVSIQVVVVQKREGILQSRQI 270
Query: 745 VEQLT-ECSTDTDQASKDVFDELFKLAPEKVNAVKEAIMNFVNQNLDRLGLSVQNLDTQF 921
E++T + + +D FD LF AP+K+N VK+ ++ FVN++L++L L V L+TQF
Sbjct: 271 QEEITGNTEALSGRHERDAFDTLFDHAPDKLNVVKKTLITFVNKHLNKLNLEVTELETQF 330
Query: 922 ADGVILLLLIGQLEGFFLHLKEFYLTPNSPAEMLHNV 1032
ADGV L+LL+G LEG+F+ L F+LTP+S + + NV
Sbjct: 331 ADGVYLVLLMGLLEGYFVPLHSFFLTPDSFEQKVLNV 367
>ref|NP_001230315.1| beta-parvin isoform d [Homo sapiens].
Length = 289
Score = 165 bits (418), Expect = 6e-41
Identities = 100/269 (37%), Positives = 148/269 (55%), Gaps = 5/269 (1%)
Frame = +1
Query: 241 APGKVDPPAAET-LAQGEKRKYLPPTSRKDPRFEELQKALMEWINTELLPEHIVVRSLEE 417
+P VD +T L + E+R + PTS++DP+F+EL K L++WIN L+ E I+V+ LEE
Sbjct: 2 SPALVDVHPEDTQLEENEERTMIDPTSKEDPKFKELVKVLLDWINDVLVEERIIVKQLEE 61
Query: 418 DMFDGLILHHLFQKLAGLKLNVEEIALTSASQRRKLTVVLEAANKSLQVEESQAKWSVES 597
D++DG +L L +KLAG KLNV E+ + Q++KL VLEA + L+ +WSV+S
Sbjct: 62 DLYDGQVLQKLLEKLAGCKLNVAEVTQSEIGQKQKLQTVLEAVHDLLRPRGWALRWSVDS 121
Query: 598 IFNKDXXXXXXXXXXXXKRFQPSLPLPANVQVEVITMESTKSGLKSEKSVEQLTECSTDT 777
I K+ F+ + LP +V V+V+ + + L S E+LT T T
Sbjct: 122 IHGKNLVAILHLLVSLAMHFRAPIRLPEHVTVQVVVVRKREGLLHSSHISEELT---TTT 178
Query: 778 D----QASKDVFDELFKLAPEKVNAVKEAIMNFVNQNLDRLGLSVQNLDTQFADGVILLL 945
+ + +D FD LF AP+K++ VK +FADGV L+L
Sbjct: 179 EMMMGRFERDAFDTLFDHAPDKLSVVK-----------------------KFADGVYLVL 215
Query: 946 LIGQLEGFFLHLKEFYLTPNSPAEMLHNV 1032
L+G LE +F+ L FYLTP S + +HNV
Sbjct: 216 LMGLLEDYFVPLHHFYLTPESFDQKVHNV 244
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.316 0.133 0.390
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 46,896,104
Number of extensions: 1424344
Number of successful extensions: 9156
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 8977
Number of HSP's successfully gapped: 11
Length of query: 369
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 265
Effective length of database: 14,868,908
Effective search space: 3940260620
Effective search space used: 3940260620
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003244
(1107 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001155972.1| gamma-parvin isoform 1 [Mus musculus]. 396 e-111
Alignment gi|NP_071716.3| gamma-parvin isoform 2 [Mus musculus]. 396 e-111
Alignment gi|NP_573395.1| beta-parvin [Mus musculus]. 200 1e-51
Alignment gi|NP_065631.3| alpha-parvin [Mus musculus]. 195 5e-50
>ref|NP_001155972.1| gamma-parvin isoform 1 [Mus musculus].
Length = 384
Score = 396 bits (1017), Expect(2) = e-111
Identities = 202/270 (74%), Positives = 227/270 (84%)
Frame = +1
Query: 223 LYNLLQAPGKVDPPAAETLAQGEKRKYLPPTSRKDPRFEELQKALMEWINTELLPEHIVV 402
LY+LLQ P +V P E L +G K+KYL P S+++P+FEELQK LMEWINT LLPEHIVV
Sbjct: 59 LYDLLQLPKEVAQPTEEELPRGGKKKYLSPNSKRNPKFEELQKVLMEWINTTLLPEHIVV 118
Query: 403 RSLEEDMFDGLILHHLFQKLAGLKLNVEEIALTSASQRRKLTVVLEAANKSLQVEESQAK 582
RSLEEDMFDGLILHHLFQKLA LKL VEEI+LTSASQR KL V+LEA N++LQVEE QAK
Sbjct: 119 RSLEEDMFDGLILHHLFQKLASLKLEVEEISLTSASQRHKLGVILEAVNQNLQVEEKQAK 178
Query: 583 WSVESIFNKDXXXXXXXXXXXXKRFQPSLPLPANVQVEVITMESTKSGLKSEKSVEQLTE 762
WSVE+IFNKD KRFQP LPLP NVQVEVI +ESTK+GLKS+K VEQLTE
Sbjct: 179 WSVETIFNKDLLATLHLLVALAKRFQPDLPLPDNVQVEVIHIESTKTGLKSDKQVEQLTE 238
Query: 763 CSTDTDQASKDVFDELFKLAPEKVNAVKEAIMNFVNQNLDRLGLSVQNLDTQFADGVILL 942
C + DQ +D FDELFKLAPEKV+AV+EAI++FVNQ L+RLGLSVQ+LDTQFADGVILL
Sbjct: 239 CKSHKDQPLQDAFDELFKLAPEKVHAVQEAIVSFVNQKLERLGLSVQSLDTQFADGVILL 298
Query: 943 LLIGQLEGFFLHLKEFYLTPNSPAEMLHNV 1032
LLIGQLEGFFLHLKEFYLTP+SP EMLHNV
Sbjct: 299 LLIGQLEGFFLHLKEFYLTPSSPTEMLHNV 328
Score = 26.2 bits (56), Expect(2) = e-111
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = +3
Query: 1074 YPVSPEDIVNK 1106
YPV+PEDIVNK
Sbjct: 343 YPVNPEDIVNK 353
>ref|NP_071716.3| gamma-parvin isoform 2 [Mus musculus].
Length = 331
Score = 396 bits (1017), Expect(2) = e-111
Identities = 202/270 (74%), Positives = 227/270 (84%)
Frame = +1
Query: 223 LYNLLQAPGKVDPPAAETLAQGEKRKYLPPTSRKDPRFEELQKALMEWINTELLPEHIVV 402
LY+LLQ P +V P E L +G K+KYL P S+++P+FEELQK LMEWINT LLPEHIVV
Sbjct: 6 LYDLLQLPKEVAQPTEEELPRGGKKKYLSPNSKRNPKFEELQKVLMEWINTTLLPEHIVV 65
Query: 403 RSLEEDMFDGLILHHLFQKLAGLKLNVEEIALTSASQRRKLTVVLEAANKSLQVEESQAK 582
RSLEEDMFDGLILHHLFQKLA LKL VEEI+LTSASQR KL V+LEA N++LQVEE QAK
Sbjct: 66 RSLEEDMFDGLILHHLFQKLASLKLEVEEISLTSASQRHKLGVILEAVNQNLQVEEKQAK 125
Query: 583 WSVESIFNKDXXXXXXXXXXXXKRFQPSLPLPANVQVEVITMESTKSGLKSEKSVEQLTE 762
WSVE+IFNKD KRFQP LPLP NVQVEVI +ESTK+GLKS+K VEQLTE
Sbjct: 126 WSVETIFNKDLLATLHLLVALAKRFQPDLPLPDNVQVEVIHIESTKTGLKSDKQVEQLTE 185
Query: 763 CSTDTDQASKDVFDELFKLAPEKVNAVKEAIMNFVNQNLDRLGLSVQNLDTQFADGVILL 942
C + DQ +D FDELFKLAPEKV+AV+EAI++FVNQ L+RLGLSVQ+LDTQFADGVILL
Sbjct: 186 CKSHKDQPLQDAFDELFKLAPEKVHAVQEAIVSFVNQKLERLGLSVQSLDTQFADGVILL 245
Query: 943 LLIGQLEGFFLHLKEFYLTPNSPAEMLHNV 1032
LLIGQLEGFFLHLKEFYLTP+SP EMLHNV
Sbjct: 246 LLIGQLEGFFLHLKEFYLTPSSPTEMLHNV 275
Score = 26.2 bits (56), Expect(2) = e-111
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = +3
Query: 1074 YPVSPEDIVNK 1106
YPV+PEDIVNK
Sbjct: 290 YPVNPEDIVNK 300
>ref|NP_573395.1| beta-parvin [Mus musculus].
Length = 365
Score = 200 bits (509), Expect = 1e-51
Identities = 113/276 (40%), Positives = 167/276 (60%), Gaps = 5/276 (1%)
Frame = +1
Query: 220 SLYNLLQAPGKVDPPAAET-LAQGEKRKYLPPTSRKDPRFEELQKALMEWINTELLPEHI 396
S N AP VD +T L + E+R + PTSR+DP+F+EL K L++WIN L E I
Sbjct: 48 SAINSPMAPALVDIHPEDTQLEENEERTMIDPTSREDPKFKELVKVLLDWINDVLAEERI 107
Query: 397 VVRSLEEDMFDGLILHHLFQKLAGLKLNVEEIALTSASQRRKLTVVLEAANKSLQVEESQ 576
+V+ LEED++DG +L L +KLA KLNV E+ + Q++KL VLEA L+
Sbjct: 108 IVKQLEEDLYDGQVLQKLLEKLAHCKLNVAEVTQSEIGQKQKLQTVLEAVQDLLRPHGWP 167
Query: 577 AKWSVESIFNKDXXXXXXXXXXXXKRFQPSLPLPANVQVEVITMESTKSGLKSEKSVEQL 756
+W+V+SI K+ F+ + LP +V V+V+ + + L S E+L
Sbjct: 168 LRWNVDSIHGKNLVAILHLLVSLAMHFRAPIHLPEHVTVQVVVVRKREGLLHSSHISEEL 227
Query: 757 TECSTDTD----QASKDVFDELFKLAPEKVNAVKEAIMNFVNQNLDRLGLSVQNLDTQFA 924
T T T+ + +D FD LF AP+K+N VK++++ FVN++L++L L V +L+TQFA
Sbjct: 228 T---TTTEIMMGRFERDAFDTLFDHAPDKLNLVKKSLITFVNKHLNKLNLEVTDLETQFA 284
Query: 925 DGVILLLLIGQLEGFFLHLKEFYLTPNSPAEMLHNV 1032
DGV L+LL+G LE +F+ L FYLTP+S + +HNV
Sbjct: 285 DGVYLVLLLGLLEDYFVPLHNFYLTPDSFDQKVHNV 320
>ref|NP_065631.3| alpha-parvin [Mus musculus].
Length = 372
Score = 195 bits (496), Expect = 5e-50
Identities = 116/335 (34%), Positives = 185/335 (55%), Gaps = 2/335 (0%)
Frame = +1
Query: 34 ATGPRGSEPLTPASRRPLGPPATWEPGTCFGLEPRTTIRDPWPSFPXXXXXXXXXXXXXX 213
AT P+ S PL P S P PP+ + + G T R
Sbjct: 2 ATSPQKS-PLVPKSPTPKSPPSRKKDDSFLGKLGGTLAR--------RKKAKEVSEFQEE 52
Query: 214 XXSLYNLLQAPGKVDPPAAETLAQ-GEKRKYLPPTSRKDPRFEELQKALMEWINTELLPE 390
+ NL +P + +TL + E R + P SR DP+ +EL K L++WIN L+ E
Sbjct: 53 GMNAINLPLSPISFELDPEDTLLEENEVRTMVDPNSRNDPKLQELMKVLIDWINDVLVGE 112
Query: 391 HIVVRSLEEDMFDGLILHHLFQKLAGLKLNVEEIALTSASQRRKLTVVLEAANKSLQVEE 570
I+V+ L ED++DG +L LF+KL KLNV E+ + +Q++KL VLE N++L++
Sbjct: 113 RIIVKDLAEDLYDGQVLQKLFEKLESEKLNVAEVTQSEIAQKQKLQTVLEKINETLKLPP 172
Query: 571 SQAKWSVESIFNKDXXXXXXXXXXXXKRFQPSLPLPANVQVEVITMESTKSGLKSEKSVE 750
KW+V+S+ K+ + F+ + LP +V ++V+ ++ + L+S + E
Sbjct: 173 RSIKWNVDSVHAKNLVAILHLLVALSQYFRAPIRLPDHVSIQVVVVQKREGILQSRQIQE 232
Query: 751 QLT-ECSTDTDQASKDVFDELFKLAPEKVNAVKEAIMNFVNQNLDRLGLSVQNLDTQFAD 927
++T + + +D FD LF AP+K+N VK+ ++ FVN++L++L L V L+TQFAD
Sbjct: 233 EITGNTEALSGRHERDAFDTLFDHAPDKLNVVKKTLITFVNKHLNKLNLEVTELETQFAD 292
Query: 928 GVILLLLIGQLEGFFLHLKEFYLTPNSPAEMLHNV 1032
GV L+LL+G LEG+F+ L F+LTP+S + + NV
Sbjct: 293 GVYLVLLMGLLEGYFVPLHSFFLTPDSFEQKVLNV 327
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.316 0.133 0.390
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 39,347,140
Number of extensions: 1169605
Number of successful extensions: 7025
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 6863
Number of HSP's successfully gapped: 6
Length of query: 369
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 266
Effective length of database: 12,523,851
Effective search space: 3331344366
Effective search space used: 3331344366
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003244
(1107 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003355358.1| PREDICTED: gamma-parvin-like [Sus scrofa]. 424 e-119
Alignment gi|XP_003355359.1| PREDICTED: beta-parvin-like [Sus scrofa]. 198 4e-51
Alignment gi|XP_003123020.2| PREDICTED: alpha-parvin-like [Sus scrofa]. 100 1e-21
Alignment gi|XP_003123021.2| PREDICTED: alpha-parvin-like [Sus scrofa]. 100 2e-21
>ref|XP_003355358.1| PREDICTED: gamma-parvin-like [Sus scrofa].
Length = 255
Score = 424 bits (1089), Expect = e-119
Identities = 220/233 (94%), Positives = 221/233 (94%)
Frame = +1
Query: 220 SLYNLLQAPGKVDPPAAETLAQGEKRKYLPPTSRKDPRFEELQKALMEWINTELLPEHIV 399
SLYNLLQAPGKVDPPAAETLAQGEKRKYLPPTSRKDPRFEELQKALMEWINTELLPEHIV
Sbjct: 5 SLYNLLQAPGKVDPPAAETLAQGEKRKYLPPTSRKDPRFEELQKALMEWINTELLPEHIV 64
Query: 400 VRSLEEDMFDGLILHHLFQKLAGLKLNVEEIALTSASQRRKLTVVLEAANKSLQVEESQA 579
VRSLEEDMFDGLILHHLFQKLAGLKLNVEEIALTSASQRRKLTVVLEAANKSLQVEESQA
Sbjct: 65 VRSLEEDMFDGLILHHLFQKLAGLKLNVEEIALTSASQRRKLTVVLEAANKSLQVEESQA 124
Query: 580 KWSVESIFNKDXXXXXXXXXXXXKRFQPSLPLPANVQVEVITMESTKSGLKSEKSVEQLT 759
KWSVESIFNKD KRFQPSLPLPANVQVEVITMESTKSGLKSEKSVEQLT
Sbjct: 125 KWSVESIFNKDLLATLHLLVALAKRFQPSLPLPANVQVEVITMESTKSGLKSEKSVEQLT 184
Query: 760 ECSTDTDQASKDVFDELFKLAPEKVNAVKEAIMNFVNQNLDRLGLSVQNLDTQ 918
ECSTDTDQASKDVFDELFKLAPEKVNAVKEAI+NFVNQNLDRLGLSVQNLDTQ
Sbjct: 185 ECSTDTDQASKDVFDELFKLAPEKVNAVKEAIVNFVNQNLDRLGLSVQNLDTQ 237
>ref|XP_003355359.1| PREDICTED: beta-parvin-like [Sus scrofa].
Length = 363
Score = 198 bits (504), Expect = 4e-51
Identities = 107/261 (40%), Positives = 159/261 (60%), Gaps = 4/261 (1%)
Frame = +1
Query: 262 PAAETLAQGEKRKYLPPTSRKDPRFEELQKALMEWINTELLPEHIVVRSLEEDMFDGLIL 441
P L + E+R + PTSR DPRF+EL K L++WIN L+ E I+V+ LEED++DG +L
Sbjct: 61 PEDTQLEENEERTVIDPTSRDDPRFKELLKVLIDWINDVLVEERIIVKQLEEDLYDGQVL 120
Query: 442 HHLFQKLAGLKLNVEEIALTSASQRRKLTVVLEAANKSLQVEESQAKWSVESIFNKDXXX 621
L +KLA KLNV E+ + Q++KL VLEA L+ +W+V+SI K+
Sbjct: 121 QKLLEKLADCKLNVAEVTQSEIGQKQKLQAVLEAVQDLLRPHGRALQWTVDSIHGKNLVA 180
Query: 622 XXXXXXXXXKRFQPSLPLPANVQVEVITMESTKSGLKSEKSVEQLTECSTDTD----QAS 789
F+ + LP +V V+V+ + + L S E+LT T T+ +
Sbjct: 181 ILHLLVALATHFRAPIHLPEHVSVQVVVVRKREGMLHSSHVTEELT---TTTEMMMGRFE 237
Query: 790 KDVFDELFKLAPEKVNAVKEAIMNFVNQNLDRLGLSVQNLDTQFADGVILLLLIGQLEGF 969
+D FD LF AP+K++ VK++++ FVN++L++L L V L+TQFADGV L+LL+G LE +
Sbjct: 238 RDAFDTLFDHAPDKLSVVKKSLITFVNKHLNKLNLEVTELETQFADGVYLVLLMGLLEDY 297
Query: 970 FLHLKEFYLTPNSPAEMLHNV 1032
F+ L FYLTP+S + +HNV
Sbjct: 298 FVPLHNFYLTPDSFPQKVHNV 318
>ref|XP_003123020.2| PREDICTED: alpha-parvin-like [Sus scrofa].
Length = 253
Score = 100 bits (250), Expect = 1e-21
Identities = 51/127 (40%), Positives = 85/127 (66%), Gaps = 1/127 (0%)
Frame = +1
Query: 655 FQPSLPLPANVQVEVITMESTKSGLKSEKSVEQLT-ECSTDTDQASKDVFDELFKLAPEK 831
F+ + LP +V ++V+ ++ + L+S + E++T + + +D FD LF AP+K
Sbjct: 81 FRAPIRLPDHVSIQVVVVQKREGILQSRQIQEEITGNTEALSGRHERDAFDTLFDHAPDK 140
Query: 832 VNAVKEAIMNFVNQNLDRLGLSVQNLDTQFADGVILLLLIGQLEGFFLHLKEFYLTPNSP 1011
+N VK+ ++ FVN++L++L L V L+TQFADGV L+LL+G LEG+F+ L F+LTP+S
Sbjct: 141 LNVVKKTLITFVNKHLNKLNLEVTELETQFADGVYLVLLMGLLEGYFVPLHSFFLTPDSF 200
Query: 1012 AEMLHNV 1032
+ + NV
Sbjct: 201 EQKVLNV 207
>ref|XP_003123021.2| PREDICTED: alpha-parvin-like [Sus scrofa].
Length = 212
Score = 100 bits (248), Expect = 2e-21
Identities = 50/122 (40%), Positives = 76/122 (62%)
Frame = +1
Query: 244 PGKVDPPAAETLAQGEKRKYLPPTSRKDPRFEELQKALMEWINTELLPEHIVVRSLEEDM 423
P ++DP L + E R + P SR DP+ +EL K L++WIN L+ E I+V+ L ED+
Sbjct: 56 PFELDPEDT-MLEENEVRTMVDPNSRSDPKLQELMKVLIDWINDVLVGERIIVKDLAEDL 114
Query: 424 FDGLILHHLFQKLAGLKLNVEEIALTSASQRRKLTVVLEAANKSLQVEESQAKWSVESIF 603
+DG +L LF+KL KLNV E+ + +Q++KL VLE N++L++ KW+V+ F
Sbjct: 115 YDGQVLQKLFEKLESEKLNVAEVTQSEIAQKQKLQTVLEKINETLKLPPRSIKWNVDCEF 174
Query: 604 NK 609
K
Sbjct: 175 CK 176
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.316 0.133 0.390
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 29,756,545
Number of extensions: 929209
Number of successful extensions: 6653
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 6389
Number of HSP's successfully gapped: 4
Length of query: 369
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 269
Effective length of database: 8,854,232
Effective search space: 2381788408
Effective search space used: 2381788408
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003244
(1107 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr05 379 e-102
>Sscrofa_Chr05
|| Length = 111506441
Score = 379 bits (191), Expect = e-102
Identities = 191/191 (100%)
Strand = Plus / Plus
Query: 2 ccctgcagacgtggcccagcgggcctgcagcagccacaggccccagaggaagtgagccgc 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2169063 ccctgcagacgtggcccagcgggcctgcagcagccacaggccccagaggaagtgagccgc 2169122
Query: 62 tcacccccgcctctcgccggcccctggggcccccggcgacctgggaacccggaacctgct 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2169123 tcacccccgcctctcgccggcccctggggcccccggcgacctgggaacccggaacctgct 2169182
Query: 122 ttggtttggaacctcggaccaccattcgagatccgtggccttcatttcctggtgtgggcg 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2169183 ttggtttggaacctcggaccaccattcgagatccgtggccttcatttcctggtgtgggcg 2169242
Query: 182 aagcagccagg 192
|||||||||||
Sbjct: 2169243 aagcagccagg 2169253
Score = 281 bits (142), Expect = 4e-73
Identities = 142/142 (100%)
Strand = Plus / Plus
Query: 455 agaagctggcgggactcaagctgaacgtggaggagattgccttgacctcggccagccagc 514
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2174495 agaagctggcgggactcaagctgaacgtggaggagattgccttgacctcggccagccagc 2174554
Query: 515 ggcgcaagctcacggtggtgctggaggccgccaacaagagcctgcaggtggaggagtcgc 574
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2174555 ggcgcaagctcacggtggtgctggaggccgccaacaagagcctgcaggtggaggagtcgc 2174614
Query: 575 aggccaagtggagcgtggaaag 596
||||||||||||||||||||||
Sbjct: 2174615 aggccaagtggagcgtggaaag 2174636
Score = 230 bits (116), Expect = 1e-57
Identities = 116/116 (100%)
Strand = Plus / Plus
Query: 596 gcatcttcaacaaggaccttctggccacgctgcatctcctcgtggccctggccaagcgct 655
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2175751 gcatcttcaacaaggaccttctggccacgctgcatctcctcgtggccctggccaagcgct 2175810
Query: 656 tccagcccagcctgcccctgccagccaacgtccaggtggaagtgatcaccatggag 711
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2175811 tccagcccagcctgcccctgccagccaacgtccaggtggaagtgatcaccatggag 2175866
Score = 208 bits (105), Expect = 5e-51
Identities = 105/105 (100%)
Strand = Plus / Plus
Query: 350 aggcactgatggagtggatcaacaccgagctccttcctgagcacatcgtggtccgtagcc 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2173738 aggcactgatggagtggatcaacaccgagctccttcctgagcacatcgtggtccgtagcc 2173797
Query: 410 tggaggaagacatgttcgacgggctcattctgcaccacctgttcc 454
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2173798 tggaggaagacatgttcgacgggctcattctgcaccacctgttcc 2173842
Score = 198 bits (100), Expect = 5e-48
Identities = 100/100 (100%)
Strand = Plus / Plus
Query: 188 ccagggctggcgaggcagggatggagccggagtccctctacaacctgctgcaggccccgg 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2170981 ccagggctggcgaggcagggatggagccggagtccctctacaacctgctgcaggccccgg 2171040
Query: 248 ggaaggtggacccaccggcggcagaaacactggcacaagg 287
||||||||||||||||||||||||||||||||||||||||
Sbjct: 2171041 ggaaggtggacccaccggcggcagaaacactggcacaagg 2171080
Score = 190 bits (96), Expect = 1e-45
Identities = 103/104 (99%), Gaps = 1/104 (0%)
Strand = Plus / Plus
Query: 917 agttcgcagatggagtcatcctgctgctgctgattggacagctggagggcttcttcctgc 976
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2185334 agttcgcagatggagtcatcctgctgctgctgattggacagctggagggcttcttcctgc 2185393
Query: 977 acctgaaggaattctacctcactcccaactctcctgcggaaatg 1020
||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 2185394 acctg-aggaattctacctcactcccaactctcctgcggaaatg 2185436
Score = 141 bits (71), Expect = 9e-31
Identities = 71/71 (100%)
Strand = Plus / Plus
Query: 848 aggccatcatgaacttcgtcaaccagaacctggaccgcctgggcctgtctgtgcagaatc 907
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2183158 aggccatcatgaacttcgtcaaccagaacctggaccgcctgggcctgtctgtgcagaatc 2183217
Query: 908 tggacacccag 918
|||||||||||
Sbjct: 2183218 tggacacccag 2183228
Score = 135 bits (68), Expect = 6e-29
Identities = 68/68 (100%)
Strand = Plus / Plus
Query: 285 aggagagaagaggaagtacctgccccccacctcccggaaggatcccagattcgaagaatt 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2172394 aggagagaagaggaagtacctgccccccacctcccggaaggatcccagattcgaagaatt 2172453
Query: 345 gcaaaagg 352
||||||||
Sbjct: 2172454 gcaaaagg 2172461
Score = 123 bits (62), Expect = 2e-25
Identities = 72/74 (97%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 1020 gctgcacaatgtcaccctggccctggagctgctgaaggacgaaagcctcctc-aataccc 1078
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct: 2192570 gctgcacaatgtcaccctggccctggagctgctgaaggacgaaggcctcctcaaataccc 2192629
Query: 1079 tgtcagccccgaag 1092
||||||||||||||
Sbjct: 2192630 tgtcagccccgaag 2192643
Score = 123 bits (62), Expect = 2e-25
Identities = 72/74 (97%), Gaps = 1/74 (1%)
Strand = Plus / Minus
Query: 1020 gctgcacaatgtcaccctggccctggagctgctgaaggacgaaagcctcctc-aataccc 1078
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct: 2461484 gctgcacaatgtcaccctggccctggagctgctgaaggacgaaggcctcctcaaataccc 2461425
Query: 1079 tgtcagccccgaag 1092
||||||||||||||
Sbjct: 2461424 tgtcagccccgaag 2461411
Score = 119 bits (60), Expect = 3e-24
Identities = 60/60 (100%)
Strand = Plus / Plus
Query: 791 aggatgtctttgatgaattatttaagctggctccggagaaagtgaatgctgtgaaagagg 850
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2182869 aggatgtctttgatgaattatttaagctggctccggagaaagtgaatgctgtgaaagagg 2182928
Score = 115 bits (58), Expect = 5e-23
Identities = 58/58 (100%)
Strand = Plus / Plus
Query: 710 agagcaccaagagtggcctgaagtcggagaagtcagtggaacagctcactgagtgcag 767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2177173 agagcaccaagagtggcctgaagtcggagaagtcagtggaacagctcactgagtgcag 2177230
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 30,588,812
Number of extensions: 200
Number of successful extensions: 200
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 197
Number of HSP's successfully gapped: 12
Length of query: 1107
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1086
Effective length of database: 2,808,413,156
Effective search space: 3049936687416
Effective search space used: 3049936687416
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)