Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003485
(1014 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001095646.1| WNT1-inducible-signaling pathway protein 2 [... 431 e-121
Alignment gi|NP_001095852.1| nephroblastoma overexpressed [Bos taurus]. 188 7e-48
Alignment gi|NP_776455.1| connective tissue growth factor precursor [Bos ... 175 5e-44
Alignment gi|NP_001029512.1| protein CYR61 [Bos taurus]. 165 7e-41
Alignment gi|XP_002692649.1| PREDICTED: WNT1 inducible signaling pathway ... 151 1e-36
Alignment gi|XP_585338.3| PREDICTED: WNT1 inducible signaling pathway pro... 151 1e-36
Alignment gi|NP_001070299.1| collagen alpha-1(III) chain [Bos taurus]. 50 4e-06
Alignment gi|XP_002686994.1| PREDICTED: kielin/chordin-like protein [Bos ... 49 7e-06
Alignment gi|XP_593676.5| PREDICTED: kielin/chordin-like protein [Bos tau... 49 7e-06
>ref|NP_001095646.1| WNT1-inducible-signaling pathway protein 2 [Bos taurus].
Length = 250
Score = 431 bits (1107), Expect = e-121
Identities = 196/250 (78%), Positives = 203/250 (81%), Gaps = 6/250 (2%)
Frame = +2
Query: 122 MGGTAQTXXXXXXXXXXXSKVCAQLXXXXXXXXXXXXXXXXXXXLVLDGCNCCRVCARRL 301
M GT QT SKVCAQL LVLDGCN CRVCARRL
Sbjct: 1 MRGTFQTHLLAFSLLCLLSKVCAQLCPTPCACPWPPPRCPPGVPLVLDGCNFCRVCARRL 60
Query: 302 GEPCDHLHICDSSQGLVCQLGAGPGSRGAVCLWGEDDGSCEVNGRLYRDGETFQPHCRIR 481
GEPCDHLH+CD SQGLVCQ GAGPG RGAVCLWGEDDGSCEVNGRLYRDGETFQPHCR+R
Sbjct: 61 GEPCDHLHVCDPSQGLVCQPGAGPGGRGAVCLWGEDDGSCEVNGRLYRDGETFQPHCRLR 120
Query: 482 CRCEDGGFTCVPLCSEDVRLPSWDCPHPRRVEVPGKCCPEWVCDP------QPLPARGPQ 643
CRCEDGGFTCVPLCSEDVRLPSWDCPHPRRVEVPGKCCPEWVCD QPLPA+G Q
Sbjct: 121 CRCEDGGFTCVPLCSEDVRLPSWDCPHPRRVEVPGKCCPEWVCDQGVGLGVQPLPAQGSQ 180
Query: 644 FSGLVAPPVPGIPCPEWSTAWGPCSTTCGLGVATRVSNQNRFCRLETQRRLCLPGPCPPA 823
FSGLVAPP PG+PCPEWSTAWGPCSTTCGLGVATRVSNQNRFCRLETQ+RLC+ GPCPPA
Sbjct: 181 FSGLVAPPAPGVPCPEWSTAWGPCSTTCGLGVATRVSNQNRFCRLETQQRLCVLGPCPPA 240
Query: 824 RGHSPRNSAF 853
RGHSPR+ AF
Sbjct: 241 RGHSPRSRAF 250
>ref|NP_001095852.1| nephroblastoma overexpressed [Bos taurus].
Length = 346
Score = 188 bits (477), Expect = 7e-48
Identities = 88/195 (45%), Positives = 119/195 (61%), Gaps = 9/195 (4%)
Frame = +2
Query: 257 VLDGCNCCRVCARRLGEPCDHLHICDSSQGLVCQLGAGPGSRGAVCLWGEDDGSCEVNGR 436
VLD C+CC VCAR+ GE C L C+ S+GL C A P ++ +C+ E D +C +G
Sbjct: 57 VLDDCSCCLVCARQRGESCSVLLPCEESRGLFCDRRADPSAQTGICMAVEGD-NCVFDGV 115
Query: 437 LYRDGETFQPHCRIRCRCEDGGFTCVPLCSEDVRLPSWDCPHPRRVEVPGKCCPEWVCDP 616
+Y+ GETFQP C+ +C C+DG CVP C ED+ LP DCP PR+V+VPG+CC +W+CD
Sbjct: 116 IYQSGETFQPSCKYQCACQDGQVGCVPRCEEDLLLPQPDCPAPRKVKVPGECCEKWICDS 175
Query: 617 ---------QPLPARGPQFSGLVAPPVPGIPCPEWSTAWGPCSTTCGLGVATRVSNQNRF 769
Q LPA + + VA I C E +T W CS +CG+G +TRV+N+N
Sbjct: 176 KETGTLGGLQTLPAYRTEATLGVAVSDSSINCIEQTTEWSACSKSCGMGFSTRVTNRNPH 235
Query: 770 CRLETQRRLCLPGPC 814
C + Q RLC+ PC
Sbjct: 236 CEMVKQTRLCMVRPC 250
>ref|NP_776455.1| connective tissue growth factor precursor [Bos taurus].
Length = 349
Score = 175 bits (444), Expect = 5e-44
Identities = 89/195 (45%), Positives = 111/195 (56%), Gaps = 8/195 (4%)
Frame = +2
Query: 254 LVLDGCNCCRVCARRLGEPCDHLHICDSSQGLVCQLGAGPGSRGAVCLWGEDDGSCEVNG 433
LVLDGC CC VCA++L E C CD +GL C G+ + VC +D G
Sbjct: 50 LVLDGCGCC-VCAKQLSELCTERDPCDPHKGLFCDFGSPTNRKIGVCT-AKDGAPYIFGG 107
Query: 434 RLYRDGETFQPHCRIRCRCEDGGFTCVPLCSEDVRLPSWDCPHPRRVEVPGKCCPEWVC- 610
+Y+ GE+FQ C+ +C C DG CVPLCS DVRLPS DCP PRRV++PGKCC EWV
Sbjct: 108 TVYQSGESFQSSCKYQCTCLDGSVGCVPLCSVDVRLPSPDCPFPRRVKLPGKCCEEWVSR 167
Query: 611 DPQPLPARGPQFSGL-------VAPPVPGIPCPEWSTAWGPCSTTCGLGVATRVSNQNRF 769
D + GP + P + C +T W S TCG+G++TRV+N N F
Sbjct: 168 DEKEHTVVGPALAAYRLEDTFGPDPTMIRANCQVQTTEWSAYSKTCGMGISTRVTNDNAF 227
Query: 770 CRLETQRRLCLPGPC 814
CRLE Q RLC+ PC
Sbjct: 228 CRLEKQSRLCMVRPC 242
>ref|NP_001029512.1| protein CYR61 [Bos taurus].
Length = 382
Score = 165 bits (417), Expect = 7e-41
Identities = 81/229 (35%), Positives = 113/229 (49%), Gaps = 42/229 (18%)
Frame = +2
Query: 254 LVLDGCNCCRVCARRLGEPCDHLHICDSSQGLVCQLGAGPGSRGAVCLWGEDDGSCEVNG 433
LV D C CC+VCA++L E C CD ++GL C GA + +C + CE N
Sbjct: 45 LVRDACGCCKVCAKQLNEDCSKTQPCDHTKGLECNFGANSTALKGICRAQSEGRPCEYNS 104
Query: 434 RLYRDGETFQPHCRIRCRCEDGGFTCVPLCSEDVRLPSWDCPHPRRVEVPGKCCPEWVCD 613
R+Y++GE+FQP+C+ +C C DG C+PLC +++ LP+ CP+ R V+V G+CC EWVCD
Sbjct: 105 RIYQNGESFQPNCKHQCTCIDGAVGCIPLCPQELSLPNLGCPNLRLVKVTGQCCEEWVCD 164
Query: 614 P------------------------------------------QPLPARGPQFSGLVAPP 667
+ LP G + L P
Sbjct: 165 DDSAKDPMDDGEGLQGKELAFDDSEVELTRNNELIAVGKSGFLKRLPVFGMEPRILYNPS 224
Query: 668 VPGIPCPEWSTAWGPCSTTCGLGVATRVSNQNRFCRLETQRRLCLPGPC 814
G C +T+W CS TCG G++TRV+N N CRL + R+C PC
Sbjct: 225 SHGQKCIVQTTSWSQCSKTCGTGISTRVTNDNPECRLVKETRICEVRPC 273
>ref|XP_002692649.1| PREDICTED: WNT1 inducible signaling pathway protein 1-like [Bos
taurus].
Length = 370
Score = 151 bits (381), Expect = 1e-36
Identities = 77/194 (39%), Positives = 109/194 (56%), Gaps = 7/194 (3%)
Frame = +2
Query: 254 LVLDGCNCCRVCARRLGEPCDHLHICDSSQGLVCQLGAGPGSRGAVCLWGEDDG-SCEVN 430
L+ DGC CC++CA++LG+ C +CD +GL C +G R AV + + G C ++
Sbjct: 71 LITDGCECCKMCAQQLGDNCTEAAVCDPHRGLYCDY-SGDHPRYAVGVCAQVVGVGCVLD 129
Query: 431 GRLYRDGETFQPHCRIRCRCEDGGFTCVPLCSEDVRLPSWDCPHPRRVEVPGKCCPEWVC 610
G Y +G++FQP+C+ C C G C PLC R P C P+RV +PG+CC +WVC
Sbjct: 130 GVRYNNGQSFQPNCKYNCTCVGGAVGCTPLCLR-ARPPRLWCRRPQRVSLPGRCCEQWVC 188
Query: 611 D-----PQPLPARGPQFSGLVAPPVPGIP-CPEWSTAWGPCSTTCGLGVATRVSNQNRFC 772
+ P+ R SG + P C +++ W PCST+CGLGV+TR+SN N C
Sbjct: 189 EDDARRPRKTAPRHTGTSGNMDEIEPWHKNCIAYTSPWSPCSTSCGLGVSTRISNVNTRC 248
Query: 773 RLETQRRLCLPGPC 814
E + RLC PC
Sbjct: 249 WPEQESRLCNLRPC 262
>ref|XP_585338.3| PREDICTED: WNT1 inducible signaling pathway protein 1 [Bos taurus].
Length = 370
Score = 151 bits (381), Expect = 1e-36
Identities = 77/194 (39%), Positives = 109/194 (56%), Gaps = 7/194 (3%)
Frame = +2
Query: 254 LVLDGCNCCRVCARRLGEPCDHLHICDSSQGLVCQLGAGPGSRGAVCLWGEDDG-SCEVN 430
L+ DGC CC++CA++LG+ C +CD +GL C +G R AV + + G C ++
Sbjct: 71 LITDGCECCKMCAQQLGDNCTEAAVCDPHRGLYCDY-SGDHPRYAVGVCAQVVGVGCVLD 129
Query: 431 GRLYRDGETFQPHCRIRCRCEDGGFTCVPLCSEDVRLPSWDCPHPRRVEVPGKCCPEWVC 610
G Y +G++FQP+C+ C C G C PLC R P C P+RV +PG+CC +WVC
Sbjct: 130 GVRYNNGQSFQPNCKYNCTCVGGAVGCTPLCLR-ARPPRLWCRRPQRVSLPGRCCEQWVC 188
Query: 611 D-----PQPLPARGPQFSGLVAPPVPGIP-CPEWSTAWGPCSTTCGLGVATRVSNQNRFC 772
+ P+ R SG + P C +++ W PCST+CGLGV+TR+SN N C
Sbjct: 189 EDDARRPRKTAPRHTGTSGNMDEIEPWHKNCIAYTSPWSPCSTSCGLGVSTRISNVNTRC 248
Query: 773 RLETQRRLCLPGPC 814
E + RLC PC
Sbjct: 249 WPEQESRLCNLRPC 262
>ref|NP_001070299.1| collagen alpha-1(III) chain [Bos taurus].
Length = 1466
Score = 49.7 bits (117), Expect = 4e-06
Identities = 38/99 (38%), Positives = 49/99 (49%), Gaps = 8/99 (8%)
Frame = +2
Query: 410 DGSCEVNGRLYRDGETFQPH-CRIRCRCEDGGFTCVPLCSEDVRLPSWDCPHPRRVEVP- 583
DG C G+ Y D + ++P C+I C C+ G C + +D L DCP+P E+P
Sbjct: 29 DGGCSHLGQSYADRDVWKPEPCQI-CVCDSGSVLCDDIICDDQEL---DCPNP---EIPF 81
Query: 584 GKCCPEWVCDPQP--LPARGPQFSGLVAPP----VPGIP 682
G+CC VC PQP P R P G P PGIP
Sbjct: 82 GECCA--VC-PQPPTAPTRPPNGQGPQGPKGDPGPPGIP 117
>ref|XP_002686994.1| PREDICTED: kielin/chordin-like protein [Bos taurus].
Length = 2273
Score = 48.9 bits (115), Expect = 7e-06
Identities = 47/137 (34%), Positives = 53/137 (38%), Gaps = 24/137 (17%)
Frame = +2
Query: 275 CCRVCARRLGE----------PCDHLHICDSSQGLV----------CQLGAGP--GSRGA 388
CC VC G P D IC +G + C A P G+
Sbjct: 197 CCPVCCTENGSHWEHGQEWTTPGDPCRICQCLEGHILCRQRECASLCPYPARPLPGTCCP 256
Query: 389 VCLWGEDDGSCEVNGRLYRDGETFQPH--CRIRCRCEDGGFTCVPLCSEDVRLPSWDCPH 562
VC DG C +NGR YR GE C RCRC +G C P P C H
Sbjct: 257 VC-----DG-CFLNGRDYRSGEPVGSGDPCS-RCRCVNGSVQCEP-----PPCPPTPCRH 304
Query: 563 PRRVEVPGKCCPEWVCD 613
P R PG+CCP VCD
Sbjct: 305 PGR--TPGECCP--VCD 317
>ref|XP_593676.5| PREDICTED: kielin/chordin-like protein [Bos taurus].
Length = 2374
Score = 48.9 bits (115), Expect = 7e-06
Identities = 47/137 (34%), Positives = 53/137 (38%), Gaps = 24/137 (17%)
Frame = +2
Query: 275 CCRVCARRLGE----------PCDHLHICDSSQGLV----------CQLGAGP--GSRGA 388
CC VC G P D IC +G + C A P G+
Sbjct: 278 CCPVCCTENGSHWEHGQEWTTPGDPCRICQCLEGHILCRQRECASLCPYPARPLPGTCCP 337
Query: 389 VCLWGEDDGSCEVNGRLYRDGETFQPH--CRIRCRCEDGGFTCVPLCSEDVRLPSWDCPH 562
VC DG C +NGR YR GE C RCRC +G C P P C H
Sbjct: 338 VC-----DG-CFLNGRDYRSGEPVGSGDPCS-RCRCVNGSVQCEP-----PPCPPTPCRH 385
Query: 563 PRRVEVPGKCCPEWVCD 613
P R PG+CCP VCD
Sbjct: 386 PGR--TPGECCP--VCD 398
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 46,155,400
Number of extensions: 1653558
Number of successful extensions: 10755
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 10479
Number of HSP's successfully gapped: 10
Length of query: 338
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 235
Effective length of database: 14,273,310
Effective search space: 3354227850
Effective search space used: 3354227850
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003485
(1014 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_853607.1| PREDICTED: similar to WNT1 inducible signaling ... 417 e-116
Alignment gi|XP_532317.2| PREDICTED: similar to NOV protein homolog precu... 192 3e-49
Alignment gi|XP_537091.2| PREDICTED: similar to CYR61 protein precursor (... 171 8e-43
Alignment gi|XP_539169.2| PREDICTED: similar to WNT1 inducible signaling ... 159 5e-39
Alignment gi|XP_533406.2| PREDICTED: similar to connective tissue growth ... 153 2e-37
Alignment gi|XP_535623.2| PREDICTED: similar to Fraser syndrome 1 isoform... 49 8e-06
Alignment gi|XP_863049.1| PREDICTED: similar to Collagen alpha 1(III) cha... 49 1e-05
>ref|XP_853607.1| PREDICTED: similar to WNT1 inducible signaling pathway protein 2
precursor (WISP-2) (Connective tissue growth factor-like
protein) (CTGF-L) (Connective tissue growth
factor-related protein 58) [Canis familiaris].
Length = 250
Score = 417 bits (1071), Expect = e-116
Identities = 188/250 (75%), Positives = 198/250 (79%), Gaps = 6/250 (2%)
Frame = +2
Query: 122 MGGTAQTXXXXXXXXXXXSKVCAQLXXXXXXXXXXXXXXXXXXXLVLDGCNCCRVCARRL 301
M GT QT SKVCAQL LVLDGC+CCRVCARRL
Sbjct: 1 MRGTPQTLLLAFSLLCLLSKVCAQLCPTPCACPWPPPRCPPGVPLVLDGCSCCRVCARRL 60
Query: 302 GEPCDHLHICDSSQGLVCQLGAGPGSRGAVCLWGEDDGSCEVNGRLYRDGETFQPHCRIR 481
GEPCDHLH+CD SQGLVCQ AGPG RGA+CLWG+D+GSCEVNGR+Y+DGETFQPHCRIR
Sbjct: 61 GEPCDHLHVCDPSQGLVCQPRAGPGGRGALCLWGDDEGSCEVNGRVYQDGETFQPHCRIR 120
Query: 482 CRCEDGGFTCVPLCSEDVRLPSWDCPHPRRVEVPGKCCPEWVCD------PQPLPARGPQ 643
C CEDGGFTCVPLCSEDVRLPSWDCPHPRRVEVPG+CCPEWVCD QPLPA+GPQ
Sbjct: 121 CHCEDGGFTCVPLCSEDVRLPSWDCPHPRRVEVPGRCCPEWVCDRGGELGTQPLPAQGPQ 180
Query: 644 FSGLVAPPVPGIPCPEWSTAWGPCSTTCGLGVATRVSNQNRFCRLETQRRLCLPGPCPPA 823
FSGL APP PG+PCPEWSTAWGPCSTTCGLGVATRVSNQN CRLETQRRLCLP PCPPA
Sbjct: 181 FSGLAAPPPPGVPCPEWSTAWGPCSTTCGLGVATRVSNQNLLCRLETQRRLCLPRPCPPA 240
Query: 824 RGHSPRNSAF 853
RG SP NS F
Sbjct: 241 RGRSPWNSTF 250
>ref|XP_532317.2| PREDICTED: similar to NOV protein homolog precursor (NovH)
(Nephroblastoma overexpressed gene protein homolog)
[Canis familiaris].
Length = 565
Score = 192 bits (489), Expect = 3e-49
Identities = 90/194 (46%), Positives = 118/194 (60%), Gaps = 8/194 (4%)
Frame = +2
Query: 257 VLDGCNCCRVCARRLGEPCDHLHICDSSQGLVCQLGAGPGSRGAVCLWGEDDGSCEVNGR 436
VLD C+CC VCAR+ GE C L C+ S+GL C A P + G +C+ E D +C +G
Sbjct: 265 VLDDCSCCLVCARQRGESCSPLQPCEESRGLFCDRRADPSAGGGICMAVEGD-NCVFDGV 323
Query: 437 LYRDGETFQPHCRIRCRCEDGGFTCVPLCSEDVRLPSWDCPHPRRVEVPGKCCPEWVCDP 616
+Y+ GETFQP C+ +C C DG CVP C ED+ LP DCP PR+VEVPG+CC +W+CD
Sbjct: 324 IYQSGETFQPSCKYQCACRDGQIGCVPRCGEDLLLPQPDCPAPRKVEVPGECCEKWICDS 383
Query: 617 Q--------PLPARGPQFSGLVAPPVPGIPCPEWSTAWGPCSTTCGLGVATRVSNQNRFC 772
LPA + + VA GI C E +T W CS +CG+G +TRV+N+N C
Sbjct: 384 NEKGELGGLALPAYRTEATLGVAVSDSGINCIEQTTEWSACSKSCGMGFSTRVTNRNPQC 443
Query: 773 RLETQRRLCLPGPC 814
+ Q RLC+ PC
Sbjct: 444 EMVKQTRLCMVRPC 457
>ref|XP_537091.2| PREDICTED: similar to CYR61 protein precursor (Cysteine-rich,
angiogenic inducer, 61) (Insulin-like growth
factor-binding protein 10) (GIG1 protein) [Canis
familiaris].
Length = 381
Score = 171 bits (434), Expect = 8e-43
Identities = 82/228 (35%), Positives = 117/228 (51%), Gaps = 41/228 (17%)
Frame = +2
Query: 254 LVLDGCNCCRVCARRLGEPCDHLHICDSSQGLVCQLGAGPGSRGAVCLWGEDDGSCEVNG 433
LV DGC CC+VCA++L E C + CD ++GL C GA + +C + CE N
Sbjct: 45 LVRDGCGCCKVCAKQLNEDCSKMQPCDHTKGLECNFGASSTALKGICRAQSEGRPCEYNS 104
Query: 434 RLYRDGETFQPHCRIRCRCEDGGFTCVPLCSEDVRLPSWDCPHPRRVEVPGKCCPEWVCD 613
R+Y++GE+FQP+C+ +C C DG C+PLC +++ LP+ CP+PR V+V G+CC EWVCD
Sbjct: 105 RIYQNGESFQPNCKHQCTCIDGAVGCIPLCPQELSLPNLGCPNPRLVKVTGQCCEEWVCD 164
Query: 614 PQP----------LPARGPQFSG-------------------------------LVAPPV 670
L +G F ++ P+
Sbjct: 165 DDDAKDPLDDGDGLLGKGLAFDASEVELTRNNELIAVGKGGSLKRLPVFGTEPRILYNPL 224
Query: 671 PGIPCPEWSTAWGPCSTTCGLGVATRVSNQNRFCRLETQRRLCLPGPC 814
G C +T+W CS TCG G++TRV+N N CRL + R+C PC
Sbjct: 225 HGQKCIVQTTSWSQCSKTCGTGISTRVTNDNLECRLVKETRICEVRPC 272
>ref|XP_539169.2| PREDICTED: similar to WNT1 inducible signaling pathway protein 1
precursor (WISP-1) (Wnt-1-induced secreted protein)
[Canis familiaris].
Length = 384
Score = 159 bits (401), Expect = 5e-39
Identities = 80/194 (41%), Positives = 110/194 (56%), Gaps = 7/194 (3%)
Frame = +2
Query: 254 LVLDGCNCCRVCARRLGEPCDHLHICDSSQGLVCQLGAGPGSRGAVCLWGEDDG-SCEVN 430
L+ DGC CC++CA++LG+ C ICD +GL C +G R A+ + + G C ++
Sbjct: 85 LITDGCECCKMCAQQLGDNCTEAAICDPHRGLYCDY-SGDRPRYAIGVCAQVVGVGCVLD 143
Query: 431 GRLYRDGETFQPHCRIRCRCEDGGFTCVPLCSEDVRLPSWDCPHPRRVEVPGKCCPEWVC 610
G Y +G++FQP+C+ C C DG C PLC R P C PRRV +PG+CC +WVC
Sbjct: 144 GVRYTNGQSFQPNCKYNCTCVDGAVGCTPLCLR-ARPPRLWCHRPRRVSIPGRCCQQWVC 202
Query: 611 DPQPLPAR--GPQFSGLVAPPVPGIP----CPEWSTAWGPCSTTCGLGVATRVSNQNRFC 772
D R + +G +A P C +++ W PCSTTCGLGV+TR+SN N C
Sbjct: 203 DHDARRPRKTAQRHTGALAATGEVEPWHRNCIAYTSPWSPCSTTCGLGVSTRISNANSRC 262
Query: 773 RLETQRRLCLPGPC 814
E + RLC PC
Sbjct: 263 WPEQESRLCNLRPC 276
>ref|XP_533406.2| PREDICTED: similar to connective tissue growth factor [Canis
familiaris].
Length = 305
Score = 153 bits (387), Expect = 2e-37
Identities = 72/145 (49%), Positives = 88/145 (60%), Gaps = 8/145 (5%)
Frame = +2
Query: 404 EDDGSCEVNGRLYRDGETFQPHCRIRCRCEDGGFTCVPLCSEDVRLPSWDCPHPRRVEVP 583
+D C G +YR GE+FQ C+ +C C DG CVPLCS DVRLPS DCP PRRV++P
Sbjct: 54 KDGAPCVFGGTVYRSGESFQSSCKYQCTCLDGAVGCVPLCSMDVRLPSPDCPFPRRVKLP 113
Query: 584 GKCCPEWVCD-PQPLPARGPQFSGL-------VAPPVPGIPCPEWSTAWGPCSTTCGLGV 739
GKCC EWVCD P+ GP + P + C +T W CS TCG+G+
Sbjct: 114 GKCCEEWVCDEPKDHTVVGPALAAYRLEDTFGPDPTMIRANCLVQTTEWSACSKTCGMGI 173
Query: 740 ATRVSNQNRFCRLETQRRLCLPGPC 814
+TRV+N N FCRLE Q RLC+ PC
Sbjct: 174 STRVTNDNAFCRLEKQSRLCMVRPC 198
>ref|XP_535623.2| PREDICTED: similar to Fraser syndrome 1 isoform 1 [Canis
familiaris].
Length = 3994
Score = 48.9 bits (115), Expect = 8e-06
Identities = 39/134 (29%), Positives = 53/134 (39%), Gaps = 11/134 (8%)
Frame = +2
Query: 269 CNCCRVCARRLGEPCDHL-----HICDSSQGLVCQLGAGPGSRGAVCLWGEDDGSCEVNG 433
C+C R +PC L + +G C + GPG SC G
Sbjct: 99 CSCTHGEVRCTPQPCPPLSCGPQELESIPEGSCCPVCVGPGK------------SCSYEG 146
Query: 434 RLYRDGETFQPHCRIRCRCEDGGFTCV-----PL-CSEDVRLPSWDCPHPRRVEVPGKCC 595
R+++DGE + +C C +G C PL C+ED + V VPGKCC
Sbjct: 147 RVFQDGEDWPLSRCAKCVCRNGVTQCFIAHCQPLFCNEDEAI----------VRVPGKCC 196
Query: 596 PEWVCDPQPLPARG 637
P+ C Q A G
Sbjct: 197 PQ--CSSQSCSASG 208
>ref|XP_863049.1| PREDICTED: similar to Collagen alpha 1(III) chain precursor isoform
9 [Canis familiaris].
Length = 1062
Score = 48.5 bits (114), Expect = 1e-05
Identities = 35/103 (33%), Positives = 48/103 (46%), Gaps = 2/103 (1%)
Frame = +2
Query: 410 DGSCEVNGRLYRDGETFQPH-CRIRCRCEDGGFTCVPLCSEDVRLPSWDCPHPRRVEVP- 583
DG C G+ Y D + ++P C+I C C+ G C + ++ L DCP+P E+P
Sbjct: 29 DGGCSHLGQSYADRDVWKPEPCQI-CVCDSGSVLCDDIICDEQEL---DCPNP---EIPF 81
Query: 584 GKCCPEWVCDPQPLPARGPQFSGLVAPPVPGIPCPEWSTAWGP 712
G+CC VC P R P G G P P S +GP
Sbjct: 82 GECCA--VCPQPPTSVREPGPQGHA-----GAPGPPVSDKYGP 117
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 47,855,729
Number of extensions: 1681635
Number of successful extensions: 10602
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 10376
Number of HSP's successfully gapped: 8
Length of query: 338
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 235
Effective length of database: 15,440,896
Effective search space: 3628610560
Effective search space used: 3628610560
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003485
(1014 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_003872.1| WNT1-inducible-signaling pathway protein 2 prec... 394 e-110
Alignment gi|NP_001892.1| connective tissue growth factor precursor [Homo... 196 2e-50
Alignment gi|NP_002505.1| protein NOV homolog precursor [Homo sapiens]. 187 1e-47
Alignment gi|NP_001545.2| protein CYR61 precursor [Homo sapiens]. 171 1e-42
Alignment gi|NP_003873.1| WNT1-inducible-signaling pathway protein 1 isof... 160 2e-39
Alignment gi|NP_937882.1| WNT1-inducible-signaling pathway protein 3 isof... 109 5e-24
Alignment gi|NP_003871.1| WNT1-inducible-signaling pathway protein 3 isof... 109 5e-24
Alignment gi|NP_543028.1| WNT1-inducible-signaling pathway protein 1 isof... 56 5e-08
Alignment gi|NP_955381.2| kielin/chordin-like protein isoform 2 [Homo sap... 51 1e-06
Alignment gi|NP_001191798.1| WNT1-inducible-signaling pathway protein 1 i... 51 1e-06
>ref|NP_003872.1| WNT1-inducible-signaling pathway protein 2 precursor [Homo
sapiens].
Length = 250
Score = 394 bits (1012), Expect = e-110
Identities = 182/250 (72%), Positives = 193/250 (77%), Gaps = 6/250 (2%)
Frame = +2
Query: 122 MGGTAQTXXXXXXXXXXXSKVCAQLXXXXXXXXXXXXXXXXXXXLVLDGCNCCRVCARRL 301
M GT +T SKV QL LVLDGC CCRVCARRL
Sbjct: 1 MRGTPKTHLLAFSLLCLLSKVRTQLCPTPCTCPWPPPRCPLGVPLVLDGCGCCRVCARRL 60
Query: 302 GEPCDHLHICDSSQGLVCQLGAGPGSRGAVCLWGEDDGSCEVNGRLYRDGETFQPHCRIR 481
GEPCD LH+CD+SQGLVCQ GAGPG RGA+CL EDD SCEVNGRLYR+GETFQPHC IR
Sbjct: 61 GEPCDQLHVCDASQGLVCQPGAGPGGRGALCLLAEDDSSCEVNGRLYREGETFQPHCSIR 120
Query: 482 CRCEDGGFTCVPLCSEDVRLPSWDCPHPRRVEVPGKCCPEWVC------DPQPLPARGPQ 643
CRCEDGGFTCVPLCSEDVRLPSWDCPHPRRVEV GKCCPEWVC QPLPA+GPQ
Sbjct: 121 CRCEDGGFTCVPLCSEDVRLPSWDCPHPRRVEVLGKCCPEWVCGQGGGLGTQPLPAQGPQ 180
Query: 644 FSGLVAPPVPGIPCPEWSTAWGPCSTTCGLGVATRVSNQNRFCRLETQRRLCLPGPCPPA 823
FSGLV+ PG+PCPEWSTAWGPCSTTCGLG+ATRVSNQNRFCRLETQRRLCL PCPP+
Sbjct: 181 FSGLVSSLPPGVPCPEWSTAWGPCSTTCGLGMATRVSNQNRFCRLETQRRLCLSRPCPPS 240
Query: 824 RGHSPRNSAF 853
RG SP+NSAF
Sbjct: 241 RGRSPQNSAF 250
>ref|NP_001892.1| connective tissue growth factor precursor [Homo sapiens].
Length = 349
Score = 196 bits (499), Expect = 2e-50
Identities = 94/195 (48%), Positives = 116/195 (59%), Gaps = 8/195 (4%)
Frame = +2
Query: 254 LVLDGCNCCRVCARRLGEPCDHLHICDSSQGLVCQLGAGPGSRGAVCLWGEDDGSCEVNG 433
LVLDGC CCRVCA++LGE C CD +GL C G+ + VC +D C G
Sbjct: 49 LVLDGCGCCRVCAKQLGELCTERDPCDPHKGLFCDFGSPANRKIGVCT-AKDGAPCIFGG 107
Query: 434 RLYRDGETFQPHCRIRCRCEDGGFTCVPLCSEDVRLPSWDCPHPRRVEVPGKCCPEWVCD 613
+YR GE+FQ C+ +C C DG C+PLCS DVRLPS DCP PRRV++PGKCC EWVCD
Sbjct: 108 TVYRSGESFQSSCKYQCTCLDGAVGCMPLCSMDVRLPSPDCPFPRRVKLPGKCCEEWVCD 167
Query: 614 -PQPLPARGPQFSGL-------VAPPVPGIPCPEWSTAWGPCSTTCGLGVATRVSNQNRF 769
P+ GP + P + C +T W CS TCG+G++TRV+N N
Sbjct: 168 EPKDQTVVGPALAAYRLEDTFGPDPTMIRANCLVQTTEWSACSKTCGMGISTRVTNDNAS 227
Query: 770 CRLETQRRLCLPGPC 814
CRLE Q RLC+ PC
Sbjct: 228 CRLEKQSRLCMVRPC 242
>ref|NP_002505.1| protein NOV homolog precursor [Homo sapiens].
Length = 357
Score = 187 bits (476), Expect = 1e-47
Identities = 88/194 (45%), Positives = 114/194 (58%), Gaps = 8/194 (4%)
Frame = +2
Query: 257 VLDGCNCCRVCARRLGEPCDHLHICDSSQGLVCQLGAGPGSRGAVCLWGEDDGSCEVNGR 436
VLDGC+CC VCAR+ GE C L CD S GL C A P ++ +C E D +C +G
Sbjct: 57 VLDGCSCCLVCARQRGESCSDLEPCDESSGLYCDRSADPSNQTGICTAVEGD-NCVFDGV 115
Query: 437 LYRDGETFQPHCRIRCRCEDGGFTCVPLCSEDVRLPSWDCPHPRRVEVPGKCCPEWVCDP 616
+YR GE FQP C+ +C C DG CVP C DV LP +CP PR+VEVPG+CC +W+C P
Sbjct: 116 IYRSGEKFQPSCKFQCTCRDGQIGCVPRCQLDVLLPEPNCPAPRKVEVPGECCEKWICGP 175
Query: 617 Q--------PLPARGPQFSGLVAPPVPGIPCPEWSTAWGPCSTTCGLGVATRVSNQNRFC 772
L A P+ + V + C E +T W CS +CG+G +TRV+N+NR C
Sbjct: 176 DEEDSLGGLTLAAYRPEATLGVEVSDSSVNCIEQTTEWTACSKSCGMGFSTRVTNRNRQC 235
Query: 773 RLETQRRLCLPGPC 814
+ Q RLC+ PC
Sbjct: 236 EMLKQTRLCMVRPC 249
>ref|NP_001545.2| protein CYR61 precursor [Homo sapiens].
Length = 381
Score = 171 bits (433), Expect = 1e-42
Identities = 81/228 (35%), Positives = 114/228 (50%), Gaps = 41/228 (17%)
Frame = +2
Query: 254 LVLDGCNCCRVCARRLGEPCDHLHICDSSQGLVCQLGAGPGSRGAVCLWGEDDGSCEVNG 433
LV DGC CC+VCA++L E C CD ++GL C GA + +C + CE N
Sbjct: 45 LVRDGCGCCKVCAKQLNEDCSKTQPCDHTKGLECNFGASSTALKGICRAQSEGRPCEYNS 104
Query: 434 RLYRDGETFQPHCRIRCRCEDGGFTCVPLCSEDVRLPSWDCPHPRRVEVPGKCCPEWVCD 613
R+Y++GE+FQP+C+ +C C DG C+PLC +++ LP+ CP+PR V+V G+CC EWVCD
Sbjct: 105 RIYQNGESFQPNCKHQCTCIDGAVGCIPLCPQELSLPNLGCPNPRLVKVTGQCCEEWVCD 164
Query: 614 PQPLPARGPQFSGLVAP-----------------------------------------PV 670
+ GL+ P+
Sbjct: 165 EDSIKDPMEDQDGLLGKELGFDASEVELTRNNELIAVGKGSSLKRLPVFGMEPRILYNPL 224
Query: 671 PGIPCPEWSTAWGPCSTTCGLGVATRVSNQNRFCRLETQRRLCLPGPC 814
G C +T+W CS TCG G++TRV+N N CRL + R+C PC
Sbjct: 225 QGQKCIVQTTSWSQCSKTCGTGISTRVTNDNPECRLVKETRICEVRPC 272
>ref|NP_003873.1| WNT1-inducible-signaling pathway protein 1 isoform 1 precursor
[Homo sapiens].
Length = 367
Score = 160 bits (405), Expect = 2e-39
Identities = 79/194 (40%), Positives = 109/194 (56%), Gaps = 7/194 (3%)
Frame = +2
Query: 254 LVLDGCNCCRVCARRLGEPCDHLHICDSSQGLVCQLGAGPGSRGAVCLWGEDDG-SCEVN 430
L+ DGC CC++CA++LG+ C ICD +GL C +G R A+ + + G C ++
Sbjct: 68 LITDGCECCKMCAQQLGDNCTEAAICDPHRGLYCDY-SGDRPRYAIGVCAQVVGVGCVLD 126
Query: 431 GRLYRDGETFQPHCRIRCRCEDGGFTCVPLCSEDVRLPSWDCPHPRRVEVPGKCCPEWVC 610
G Y +G++FQP+C+ C C DG C PLC VR P CPHPRRV +PG CC +WVC
Sbjct: 127 GVRYNNGQSFQPNCKYNCTCIDGAVGCTPLCLR-VRPPRLWCPHPRRVSIPGHCCEQWVC 185
Query: 611 DP------QPLPARGPQFSGLVAPPVPGIPCPEWSTAWGPCSTTCGLGVATRVSNQNRFC 772
+ + P F + C +++ W PCST+CGLGV+TR+SN N C
Sbjct: 186 EDDAKRPRKTAPRDTGAFDAVGEVEAWHRNCIAYTSPWSPCSTSCGLGVSTRISNVNAQC 245
Query: 773 RLETQRRLCLPGPC 814
E + RLC PC
Sbjct: 246 WPEQESRLCNLRPC 259
>ref|NP_937882.1| WNT1-inducible-signaling pathway protein 3 isoform 3 [Homo
sapiens].
Length = 372
Score = 109 bits (272), Expect = 5e-24
Identities = 65/194 (33%), Positives = 91/194 (46%), Gaps = 7/194 (3%)
Frame = +2
Query: 254 LVLDGCNCCRVCARRLGEPCDHLHICDSSQGLVCQLGAG-PGSRGAVCLWGEDDGSCEVN 430
LV DGC CC++CA++ GE C+ +CD +GL C P VC + G CE N
Sbjct: 85 LVRDGCGCCKICAKQPGEICNEADLCDPHKGLYCDYSVDRPRYETGVCAYLVAVG-CEFN 143
Query: 431 GRLYRDGETFQPHCRIRCRCEDGGFTCVPLCSEDVRLPSWDCPHPRRVEVPGKCCPEWVC 610
Y +G+ FQP+ C C G C PL +L C + GK + C
Sbjct: 144 QVHYHNGQVFQPNPLFSCLCVSGAIGCTPLFIP--KLAGSHCSGAKG----GKKSDQSNC 197
Query: 611 DPQPLPARGPQFSGLVAPPVPGIP------CPEWSTAWGPCSTTCGLGVATRVSNQNRFC 772
+PL + S P +P C +T W PCS TCG+G++ RV+N+N C
Sbjct: 198 SLEPL-LQQLSTSYKTMPAYRNLPLIWKKKCLVQATKWTPCSRTCGMGISNRVTNENSNC 256
Query: 773 RLETQRRLCLPGPC 814
+ ++RLC PC
Sbjct: 257 EMRKEKRLCYIQPC 270
>ref|NP_003871.1| WNT1-inducible-signaling pathway protein 3 isoform 1 [Homo
sapiens].
Length = 354
Score = 109 bits (272), Expect = 5e-24
Identities = 65/194 (33%), Positives = 91/194 (46%), Gaps = 7/194 (3%)
Frame = +2
Query: 254 LVLDGCNCCRVCARRLGEPCDHLHICDSSQGLVCQLGAG-PGSRGAVCLWGEDDGSCEVN 430
LV DGC CC++CA++ GE C+ +CD +GL C P VC + G CE N
Sbjct: 67 LVRDGCGCCKICAKQPGEICNEADLCDPHKGLYCDYSVDRPRYETGVCAYLVAVG-CEFN 125
Query: 431 GRLYRDGETFQPHCRIRCRCEDGGFTCVPLCSEDVRLPSWDCPHPRRVEVPGKCCPEWVC 610
Y +G+ FQP+ C C G C PL +L C + GK + C
Sbjct: 126 QVHYHNGQVFQPNPLFSCLCVSGAIGCTPLFIP--KLAGSHCSGAKG----GKKSDQSNC 179
Query: 611 DPQPLPARGPQFSGLVAPPVPGIP------CPEWSTAWGPCSTTCGLGVATRVSNQNRFC 772
+PL + S P +P C +T W PCS TCG+G++ RV+N+N C
Sbjct: 180 SLEPL-LQQLSTSYKTMPAYRNLPLIWKKKCLVQATKWTPCSRTCGMGISNRVTNENSNC 238
Query: 773 RLETQRRLCLPGPC 814
+ ++RLC PC
Sbjct: 239 EMRKEKRLCYIQPC 252
>ref|NP_543028.1| WNT1-inducible-signaling pathway protein 1 isoform 2 precursor
[Homo sapiens].
Length = 280
Score = 56.2 bits (134), Expect = 5e-08
Identities = 39/128 (30%), Positives = 56/128 (43%), Gaps = 13/128 (10%)
Frame = +2
Query: 470 CRIRCRCEDGGFTCVPLCSEDVRL--PSWDCPHPRRVEVPGKCCPEWVCDPQ-----PLP 628
C+ C C P C V L +C ++ C +CDP
Sbjct: 49 CKWPCECPPSP----PRCPLGVSLITDGCECCKMCAQQLGDNCTEAAICDPHRGLYCDYS 104
Query: 629 ARGPQFS-GLVAPPVPGIP-----CPEWSTAWGPCSTTCGLGVATRVSNQNRFCRLETQR 790
P+++ G+ A V + C +++ W PCST+CGLGV+TR+SN N C E +
Sbjct: 105 GDRPRYAIGVCAHAVGEVEAWHRNCIAYTSPWSPCSTSCGLGVSTRISNVNAQCWPEQES 164
Query: 791 RLCLPGPC 814
RLC PC
Sbjct: 165 RLCNLRPC 172
Score = 48.5 bits (114), Expect = 1e-05
Identities = 17/34 (50%), Positives = 24/34 (70%)
Frame = +2
Query: 254 LVLDGCNCCRVCARRLGEPCDHLHICDSSQGLVC 355
L+ DGC CC++CA++LG+ C ICD +GL C
Sbjct: 68 LITDGCECCKMCAQQLGDNCTEAAICDPHRGLYC 101
>ref|NP_955381.2| kielin/chordin-like protein isoform 2 [Homo sapiens].
Length = 814
Score = 51.2 bits (121), Expect = 1e-06
Identities = 47/154 (30%), Positives = 54/154 (35%), Gaps = 22/154 (14%)
Frame = +2
Query: 332 DSSQGLVCQLGA---GPGSRGAVCLWGEDDGSCEVNGRLYRDGETFQPHCRIRCRCEDGG 502
D+ VCQ GA GP + C C NG+ Y +GETF P CRC +G
Sbjct: 112 DACTACVCQDGAAHCGPQAHLPHCR------GCSQNGQTYGNGETFSPDACTTCRCLEGT 165
Query: 503 FTCVPLCSEDVRLPSWDCPHPRRVEVPGKCCPEWV--CDPQ-PLPARGPQFSGLVAPPV- 670
TC P CP P G CCP CD + L G F P +
Sbjct: 166 ITC-----NQKPCPRGPCPEP------GACCPHCKPGCDYEGQLYEEGVTFLSSSNPCLQ 214
Query: 671 ---------------PGIPCPEWSTAWGPCSTTC 727
P PCPE G C TC
Sbjct: 215 CTCLRSRVRCMALKCPPSPCPEPVLRPGHCCPTC 248
Score = 49.3 bits (116), Expect = 6e-06
Identities = 49/156 (31%), Positives = 57/156 (36%), Gaps = 11/156 (7%)
Frame = +2
Query: 407 DDGSCEVNGRLYRDGETFQPH----CRIRCRCEDGGFTCVPLCSEDVRLPSWDCPHPRRV 574
D C G+ Y G F PH CR+ CRC G C L V LP CP P V
Sbjct: 596 DCSGCAFGGKEYPSGADF-PHPSDPCRL-CRCLSGNVQC--LARRCVPLP---CPEP--V 646
Query: 575 EVPGKCCPEWVCDPQPLPARGPQFSGLVAPPVPGIPCPEWSTAWGPCSTTCGLGVATRVS 754
+PG+CCP+ C P PA P+ PG + P C
Sbjct: 647 LLPGECCPQ--CPAAPAPAGCPR---------PGAAHARHQEYFSPPGDPC--------- 686
Query: 755 NQNRFCRLETQRRLCLPG-------PCPPARGHSPR 841
+R LCL G PCPPA PR
Sbjct: 687 ----------RRCLCLDGSVSCQRLPCPPAPCAHPR 712
>ref|NP_001191798.1| WNT1-inducible-signaling pathway protein 1 isoform 3 precursor
[Homo sapiens].
Length = 155
Score = 51.2 bits (121), Expect = 1e-06
Identities = 23/57 (40%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Frame = +2
Query: 254 LVLDGCNCCRVCARRLGEPCDHLHICDSSQGLVCQL-GAGPGSRGAVCLWGEDDGSC 421
L+ DGC CC++CA++LG+ C ICD +GL C G P VC E+ C
Sbjct: 68 LITDGCECCKMCAQQLGDNCTEAAICDPHRGLYCDYSGDRPRYAIGVCARREEVSGC 124
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 46,766,865
Number of extensions: 1628948
Number of successful extensions: 10225
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 10009
Number of HSP's successfully gapped: 14
Length of query: 338
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 235
Effective length of database: 14,901,872
Effective search space: 3501939920
Effective search space used: 3501939920
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003485
(1014 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_058569.2| WNT1-inducible-signaling pathway protein 2 prec... 345 2e-95
Alignment gi|NP_034347.2| connective tissue growth factor precursor [Mus ... 203 2e-52
Alignment gi|NP_035060.1| protein NOV homolog precursor [Mus musculus]. 187 1e-47
Alignment gi|NP_034646.1| protein CYR61 precursor [Mus musculus]. 167 9e-42
Alignment gi|NP_061353.1| WNT1-inducible-signaling pathway protein 1 prec... 157 9e-39
Alignment gi|NP_001120848.1| WNT1 inducible signaling pathway protein 3 [... 114 1e-25
Alignment gi|NP_031768.2| collagen alpha-1(I) chain precursor [Mus muscul... 52 1e-06
Alignment gi|NP_001025156.3| kielin/chordin-like protein [Mus musculus]. 49 6e-06
>ref|NP_058569.2| WNT1-inducible-signaling pathway protein 2 precursor [Mus
musculus].
Length = 251
Score = 345 bits (886), Expect = 2e-95
Identities = 153/207 (73%), Positives = 167/207 (80%), Gaps = 7/207 (3%)
Frame = +2
Query: 254 LVLDGCNCCRVCARRLGEPCDHLHICDSSQGLVCQLGAGPGSRGAVCLWGEDDGSCEVNG 433
LVLDGC CCRVCARRLGE CDHLH+CD SQGLVCQ GAGP RGAVCL+ EDDGSCEVNG
Sbjct: 45 LVLDGCGCCRVCARRLGESCDHLHVCDPSQGLVCQPGAGPSGRGAVCLFEEDDGSCEVNG 104
Query: 434 RLYRDGETFQPHCRIRCRCEDGGFTCVPLCSEDVRLPSWDCPHPRRVEVPGKCCPEWVCD 613
R Y DGETF+P+CR+ CRC+DGGFTC+PLCSEDVRLPSWDCP PRR++VPG+CCPEWVCD
Sbjct: 105 RRYLDGETFKPNCRVLCRCDDGGFTCLPLCSEDVRLPSWDCPRPRRIQVPGRCCPEWVCD 164
Query: 614 P-------QPLPARGPQFSGLVAPPVPGIPCPEWSTAWGPCSTTCGLGVATRVSNQNRFC 772
QP A+G Q S LV P PCP WSTAWGPCSTTCGLG+ATRVSNQNRFC
Sbjct: 165 QAVMQPAIQPSSAQGHQLSALVTPASADGPCPNWSTAWGPCSTTCGLGIATRVSNQNRFC 224
Query: 773 RLETQRRLCLPGPCPPARGHSPRNSAF 853
+LE QRRLCL PC +R H NSAF
Sbjct: 225 QLEIQRRLCLSRPCLASRSHGSWNSAF 251
>ref|NP_034347.2| connective tissue growth factor precursor [Mus musculus].
Length = 348
Score = 203 bits (516), Expect = 2e-52
Identities = 97/195 (49%), Positives = 118/195 (60%), Gaps = 8/195 (4%)
Frame = +2
Query: 254 LVLDGCNCCRVCARRLGEPCDHLHICDSSQGLVCQLGAGPGSRGAVCLWGEDDGSCEVNG 433
LVLDGC CCRVCA++LGE C CD +GL C G+ + VC +D C G
Sbjct: 48 LVLDGCGCCRVCAKQLGELCTERDPCDPHKGLFCDFGSPANRKIGVCT-AKDGAPCVFGG 106
Query: 434 RLYRDGETFQPHCRIRCRCEDGGFTCVPLCSEDVRLPSWDCPHPRRVEVPGKCCPEWVCD 613
+YR GE+FQ C+ +C C DG CVPLCS DVRLPS DCP PRRV++PGKCC EWVCD
Sbjct: 107 SVYRSGESFQSSCKYQCTCLDGAVGCVPLCSMDVRLPSPDCPFPRRVKLPGKCCEEWVCD 166
Query: 614 -PQPLPARGPQFSGL-------VAPPVPGIPCPEWSTAWGPCSTTCGLGVATRVSNQNRF 769
P+ A GP + P + C +T W CS TCG+G++TRV+N N F
Sbjct: 167 EPKDRTAVGPALAAYRLEDTFGPDPTMMRANCLVQTTEWSACSKTCGMGISTRVTNDNTF 226
Query: 770 CRLETQRRLCLPGPC 814
CRLE Q RLC+ PC
Sbjct: 227 CRLEKQSRLCMVRPC 241
>ref|NP_035060.1| protein NOV homolog precursor [Mus musculus].
Length = 354
Score = 187 bits (474), Expect = 1e-47
Identities = 89/197 (45%), Positives = 117/197 (59%), Gaps = 11/197 (5%)
Frame = +2
Query: 257 VLDGCNCCRVCARRLGEPCDHLHICDSSQGLVCQLGAGPGSRGAVCLWGEDDGSCEVNGR 436
VLDGC+CC VCAR+ GE C + CD S GL C A P ++ +C+ E D +C +G
Sbjct: 51 VLDGCSCCPVCARQRGESCSEMRPCDQSSGLYCDRSADPNNQTGICMVPEGD-NCVFDGV 109
Query: 437 LYRDGETFQPHCRIRCRCEDGGFTCVPLCSEDVRLPSWDCPHPRRVEVPGKCCPEWVC-- 610
+YR+GE F+P+C+ C C DG C+P C DV LP DCP PR+V VPG+CC +W C
Sbjct: 110 IYRNGEKFEPNCQYFCTCRDGQIGCLPRCQLDVLLPGPDCPAPRKVAVPGECCEKWTCGS 169
Query: 611 DPQ---------PLPARGPQFSGLVAPPVPGIPCPEWSTAWGPCSTTCGLGVATRVSNQN 763
D Q LPA P+ + V I C E +T W CS +CG+GV+TRV+N+N
Sbjct: 170 DEQGTQGTLGGLALPAYRPEATVGVEVSDSSINCIEQTTEWSACSKSCGMGVSTRVTNRN 229
Query: 764 RFCRLETQRRLCLPGPC 814
R C + Q RLC+ PC
Sbjct: 230 RQCEMVKQTRLCIVRPC 246
>ref|NP_034646.1| protein CYR61 precursor [Mus musculus].
Length = 379
Score = 167 bits (424), Expect = 9e-42
Identities = 82/226 (36%), Positives = 115/226 (50%), Gaps = 39/226 (17%)
Frame = +2
Query: 254 LVLDGCNCCRVCARRLGEPCDHLHICDSSQGLVCQLGAGPGSRGAVCLWGEDDGSCEVNG 433
LV DGC CC+VCA++L E C CD ++GL C GA + +C + CE N
Sbjct: 45 LVRDGCGCCKVCAKQLNEDCSKTQPCDHTKGLECNFGASSTALKGICRAQSEGRPCEYNS 104
Query: 434 RLYRDGETFQPHCRIRCRCEDGGFTCVPLCSEDVRLPSWDCPHPRRVEVPGKCCPEWVCD 613
R+Y++GE+FQP+C+ +C C DG C+PLC +++ LP+ CP+PR V+V G+CC EWVCD
Sbjct: 105 RIYQNGESFQPNCKHQCTCIDGAVGCIPLCPQELSLPNLGCPNPRLVKVSGQCCEEWVCD 164
Query: 614 P--------------------------------------QPLPARGPQFSGLVAP-PVPG 676
+ LP G + L P G
Sbjct: 165 EDSIKDSLDDQDDLLGLDASEVELTRNNELIAIGKGSSLKRLPVFGTEPRVLFNPLHAHG 224
Query: 677 IPCPEWSTAWGPCSTTCGLGVATRVSNQNRFCRLETQRRLCLPGPC 814
C +T+W CS +CG G++TRV+N N CRL + R+C PC
Sbjct: 225 QKCIVQTTSWSQCSKSCGTGISTRVTNDNPECRLVKETRICEVRPC 270
>ref|NP_061353.1| WNT1-inducible-signaling pathway protein 1 precursor [Mus
musculus].
Length = 367
Score = 157 bits (398), Expect = 9e-39
Identities = 82/196 (41%), Positives = 107/196 (54%), Gaps = 9/196 (4%)
Frame = +2
Query: 254 LVLDGCNCCRVCARRLGEPCDHLHICDSSQGLVCQLGAGPGSRGAVCLWGEDDG-SCEVN 430
L+ DGC CC++CA++LG+ C ICD +GL C +G R A+ + + G C ++
Sbjct: 68 LITDGCECCKICAQQLGDNCTEAAICDPHRGLYCDY-SGDRPRYAIGVCAQVVGVGCVLD 126
Query: 431 GRLYRDGETFQPHCRIRCRCEDGGFTCVPLCSEDVRLPSWDCPHPRRVEVPGKCCPEWVC 610
G Y +GE+FQP+CR C C DG C PLC R P C PR V VPG+CC +WVC
Sbjct: 127 GVRYTNGESFQPNCRYNCTCIDGTVGCTPLCLSP-RPPRLWCRQPRHVRVPGQCCEQWVC 185
Query: 611 DPQP--------LPARGPQFSGLVAPPVPGIPCPEWSTAWGPCSTTCGLGVATRVSNQNR 766
D L R SG V C +++ W PCSTTCGLG++TR+SN N
Sbjct: 186 DDDARRPRQTALLDTRAFAASGAVEQRYEN--CIAYTSPWSPCSTTCGLGISTRISNVNA 243
Query: 767 FCRLETQRRLCLPGPC 814
C E + RLC PC
Sbjct: 244 RCWPEQESRLCNLRPC 259
>ref|NP_001120848.1| WNT1 inducible signaling pathway protein 3 [Mus musculus].
Length = 354
Score = 114 bits (285), Expect = 1e-25
Identities = 65/188 (34%), Positives = 86/188 (45%), Gaps = 1/188 (0%)
Frame = +2
Query: 254 LVLDGCNCCRVCARRLGEPCDHLHICDSSQGLVCQL-GAGPGSRGAVCLWGEDDGSCEVN 430
LV DGC CC+VCA++ G+ C+ ICD +GL C G P VC + G CE N
Sbjct: 67 LVRDGCGCCKVCAKQPGDTCNEAEICDPHKGLYCDYSGDTPRYETGVCAYLVAVG-CEFN 125
Query: 431 GRLYRDGETFQPHCRIRCRCEDGGFTCVPLCSEDVRLPSWDCPHPRRVEVPGKCCPEWVC 610
Y++G+ FQPH C C G C PL + + RR P C
Sbjct: 126 RVYYQNGQVFQPHPLFSCLCVSGAIGCTPLFIPKLAGSNCSAAKGRRKTDPPNC-GRGTL 184
Query: 611 DPQPLPARGPQFSGLVAPPVPGIPCPEWSTAWGPCSTTCGLGVATRVSNQNRFCRLETQR 790
Q + + P C +T W PCS TCG+G++ RV+N N C + +R
Sbjct: 185 QQQNSASYKTMSAYRNLPLTWRKKCLVQATKWTPCSRTCGMGISNRVTNDNANCEMRKER 244
Query: 791 RLCLPGPC 814
RLC PC
Sbjct: 245 RLCYIQPC 252
>ref|NP_031768.2| collagen alpha-1(I) chain precursor [Mus musculus].
Length = 1453
Score = 51.6 bits (122), Expect = 1e-06
Identities = 61/203 (30%), Positives = 81/203 (39%), Gaps = 22/203 (10%)
Frame = +2
Query: 416 SCEVNGRLYRDGETFQPHCRIRCRCEDGGFTCVPL-CSEDVRLPSWDCPHPRRVEVPGKC 592
SC NG +GET++P + C C +G C + C+E++ DCP+P+R E G+C
Sbjct: 30 SCIHNGLRVPNGETWKPEVCLICICHNGTAVCDDVQCNEEL-----DCPNPQRRE--GEC 82
Query: 593 ---CPEWVCDPQ--------PLPARGPQF-SGLVAPP-------VPGIPCPEWSTAWGPC 715
CPE P P GPQ G V PP PG+P P GP
Sbjct: 83 CAFCPEEYVSPNSEDVGVEGPKGDPGPQGPRGPVGPPGRDGIPGQPGLPGPP-----GPP 137
Query: 716 STTCGLGVATRVSNQNRFCRLETQRRLCLPGPCPPARGHSPRNSAF*SWAENGD-FVSPP 892
G+ ++Q + E + +PGP P+ PR A F PP
Sbjct: 138 GPPGPPGLGGNFASQMSYGYDEKSAGVSVPGPMGPS---GPRGLPGPPGAPGPQGFQGPP 194
Query: 893 QWAIWPAGHRPAWVY-HPGPGGK 958
P G P PGP GK
Sbjct: 195 GEPGEPGGSGPMGPRGPPGPPGK 217
>ref|NP_001025156.3| kielin/chordin-like protein [Mus musculus].
Length = 1550
Score = 48.9 bits (115), Expect = 6e-06
Identities = 60/198 (30%), Positives = 69/198 (34%), Gaps = 17/198 (8%)
Frame = +2
Query: 284 VCARRLGEPCDHLHICDSSQGLV-CQLGAGPGSRGAVCLWG----EDDGSCEVNGRLYRD 448
V R P D C +G CQL A P + L G D C G+ Y +
Sbjct: 554 VDGERFPHPRDPCQECWCQEGQAHCQLRACPSAPCVHPLPGTCCKNDCTGCAFGGKEYPN 613
Query: 449 GETFQPH----CRIRCRCEDGGFTCVPLCSEDVRLPSWDCPHPRRVEVPGKCCPEWVCDP 616
G F PH CR+ CRC G C+ R P CP P V PG CCP+
Sbjct: 614 GADF-PHPTDPCRL-CRCLSGNVQCLAR-----RCPPLSCPQP--VLTPGDCCPQC---- 660
Query: 617 QPLPARGPQFSGLVAPPV--------PGIPCPEWSTAWGPCSTTCGLGVATRVSNQNRFC 772
PA PQ +V PV PG PC G S +C
Sbjct: 661 PDAPADCPQSGNMV--PVRHQEHFFQPGDPCSRCLCLDG--SVSC--------------- 701
Query: 773 RLETQRRLCLPGPCPPAR 826
QR C P PC R
Sbjct: 702 ----QRLTCPPAPCAHPR 715
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 39,112,810
Number of extensions: 1328643
Number of successful extensions: 7713
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 7486
Number of HSP's successfully gapped: 9
Length of query: 338
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 236
Effective length of database: 12,553,887
Effective search space: 2962717332
Effective search space used: 2962717332
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003485
(1014 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003134501.1| PREDICTED: WNT1-inducible-signaling pathway ... 474 e-134
Alignment gi|XP_003134500.1| PREDICTED: WNT1-inducible-signaling pathway ... 474 e-134
Alignment gi|NP_998998.1| connective tissue growth factor precursor [Sus ... 190 1e-48
Alignment gi|XP_001927085.1| PREDICTED: protein NOV homolog [Sus scrofa]. 188 5e-48
Alignment gi|XP_001927775.1| PREDICTED: protein CYR61 [Sus scrofa]. 177 6e-45
Alignment gi|XP_001927510.1| PREDICTED: WNT1-inducible-signaling pathway ... 114 1e-25
Alignment gi|XP_003361345.1| PREDICTED: WNT1-inducible-signaling pathway ... 54 1e-07
Alignment gi|XP_003134743.1| PREDICTED: kielin/chordin-like protein [Sus ... 52 5e-07
Alignment gi|NP_001230226.1| collagen alpha-1(III) chain [Sus scrofa]. 48 1e-05
>ref|XP_003134501.1| PREDICTED: WNT1-inducible-signaling pathway protein 2-like isoform
2 [Sus scrofa].
Length = 244
Score = 474 bits (1220), Expect = e-134
Identities = 214/244 (87%), Positives = 214/244 (87%)
Frame = +2
Query: 122 MGGTAQTXXXXXXXXXXXSKVCAQLXXXXXXXXXXXXXXXXXXXLVLDGCNCCRVCARRL 301
MGGTAQT SKVCAQL LVLDGCNCCRVCARRL
Sbjct: 1 MGGTAQTLILAFSLLCLLSKVCAQLCPTPCACPWPPPRCPPGVPLVLDGCNCCRVCARRL 60
Query: 302 GEPCDHLHICDSSQGLVCQLGAGPGSRGAVCLWGEDDGSCEVNGRLYRDGETFQPHCRIR 481
GEPCDHLHICDSSQGLVCQLGAGPGSRGAVCLWGEDDGSCEVNGRLYRDGETFQPHCRIR
Sbjct: 61 GEPCDHLHICDSSQGLVCQLGAGPGSRGAVCLWGEDDGSCEVNGRLYRDGETFQPHCRIR 120
Query: 482 CRCEDGGFTCVPLCSEDVRLPSWDCPHPRRVEVPGKCCPEWVCDPQPLPARGPQFSGLVA 661
CRCEDGGFTCVPLCSEDVRLPSWDCPHPRRVEVPGKCCPEWVCDPQPLPARGPQFSGLVA
Sbjct: 121 CRCEDGGFTCVPLCSEDVRLPSWDCPHPRRVEVPGKCCPEWVCDPQPLPARGPQFSGLVA 180
Query: 662 PPVPGIPCPEWSTAWGPCSTTCGLGVATRVSNQNRFCRLETQRRLCLPGPCPPARGHSPR 841
PPVPGIPCPEWSTAWGPCSTTCGLGVATRVSNQNRFCRLETQRRLCLPGPCPPARGHSPR
Sbjct: 181 PPVPGIPCPEWSTAWGPCSTTCGLGVATRVSNQNRFCRLETQRRLCLPGPCPPARGHSPR 240
Query: 842 NSAF 853
NSAF
Sbjct: 241 NSAF 244
>ref|XP_003134500.1| PREDICTED: WNT1-inducible-signaling pathway protein 2-like isoform
1 [Sus scrofa].
Length = 244
Score = 474 bits (1220), Expect = e-134
Identities = 214/244 (87%), Positives = 214/244 (87%)
Frame = +2
Query: 122 MGGTAQTXXXXXXXXXXXSKVCAQLXXXXXXXXXXXXXXXXXXXLVLDGCNCCRVCARRL 301
MGGTAQT SKVCAQL LVLDGCNCCRVCARRL
Sbjct: 1 MGGTAQTLILAFSLLCLLSKVCAQLCPTPCACPWPPPRCPPGVPLVLDGCNCCRVCARRL 60
Query: 302 GEPCDHLHICDSSQGLVCQLGAGPGSRGAVCLWGEDDGSCEVNGRLYRDGETFQPHCRIR 481
GEPCDHLHICDSSQGLVCQLGAGPGSRGAVCLWGEDDGSCEVNGRLYRDGETFQPHCRIR
Sbjct: 61 GEPCDHLHICDSSQGLVCQLGAGPGSRGAVCLWGEDDGSCEVNGRLYRDGETFQPHCRIR 120
Query: 482 CRCEDGGFTCVPLCSEDVRLPSWDCPHPRRVEVPGKCCPEWVCDPQPLPARGPQFSGLVA 661
CRCEDGGFTCVPLCSEDVRLPSWDCPHPRRVEVPGKCCPEWVCDPQPLPARGPQFSGLVA
Sbjct: 121 CRCEDGGFTCVPLCSEDVRLPSWDCPHPRRVEVPGKCCPEWVCDPQPLPARGPQFSGLVA 180
Query: 662 PPVPGIPCPEWSTAWGPCSTTCGLGVATRVSNQNRFCRLETQRRLCLPGPCPPARGHSPR 841
PPVPGIPCPEWSTAWGPCSTTCGLGVATRVSNQNRFCRLETQRRLCLPGPCPPARGHSPR
Sbjct: 181 PPVPGIPCPEWSTAWGPCSTTCGLGVATRVSNQNRFCRLETQRRLCLPGPCPPARGHSPR 240
Query: 842 NSAF 853
NSAF
Sbjct: 241 NSAF 244
>ref|NP_998998.1| connective tissue growth factor precursor [Sus scrofa].
Length = 349
Score = 190 bits (482), Expect = 1e-48
Identities = 90/194 (46%), Positives = 114/194 (58%), Gaps = 8/194 (4%)
Frame = +2
Query: 257 VLDGCNCCRVCARRLGEPCDHLHICDSSQGLVCQLGAGPGSRGAVCLWGEDDGSCEVNGR 436
+L+GC CCR+CA+ LG+ C CD +GL C G+ + VC +D C G
Sbjct: 50 LLEGCGCCRLCAKHLGDLCTERAPCDPHKGLFCDFGSPANRKIGVCT-AKDCAPCVFGGT 108
Query: 437 LYRDGETFQPHCRIRCRCEDGGFTCVPLCSEDVRLPSWDCPHPRRVEVPGKCCPEWVCD- 613
+YR GE+FQ C+ +C C DG CVPLCS DVRLPS DCP PRRV++PGKCC EWVCD
Sbjct: 109 VYRSGESFQSSCKYQCTCLDGAVGCVPLCSMDVRLPSPDCPFPRRVKLPGKCCEEWVCDE 168
Query: 614 PQPLPARGPQFSGL-------VAPPVPGIPCPEWSTAWGPCSTTCGLGVATRVSNQNRFC 772
P+ GP + P + C +T W CS TCG+G++TRV+N N C
Sbjct: 169 PKDHTVVGPALAAYRLEDTFGPDPTMMRANCLVQTTEWSACSKTCGMGISTRVTNDNASC 228
Query: 773 RLETQRRLCLPGPC 814
RLE Q RLC+ PC
Sbjct: 229 RLEKQSRLCMVRPC 242
>ref|XP_001927085.1| PREDICTED: protein NOV homolog [Sus scrofa].
Length = 358
Score = 188 bits (477), Expect = 5e-48
Identities = 88/195 (45%), Positives = 119/195 (61%), Gaps = 9/195 (4%)
Frame = +2
Query: 257 VLDGCNCCRVCARRLGEPCDHLHICDSSQGLVCQLGAGPGSRGAVCLWGEDDGSCEVNGR 436
VLD C+CC VCAR+ GE C + C+ S+GL C A P ++ +C+ E D +C +G
Sbjct: 57 VLDDCSCCLVCARQRGESCSVMLPCEESRGLFCDRRADPSAQTGICMAIEGD-NCVFDGV 115
Query: 437 LYRDGETFQPHCRIRCRCEDGGFTCVPLCSEDVRLPSWDCPHPRRVEVPGKCCPEWVCDP 616
+Y+ GETFQP C+ +C C+DG CVP C ED+ LP DCP PR+V+VPG+CC +W+CD
Sbjct: 116 IYQSGETFQPSCKYQCACQDGQVGCVPRCEEDLLLPQPDCPAPRKVKVPGECCEKWICDS 175
Query: 617 ---------QPLPARGPQFSGLVAPPVPGIPCPEWSTAWGPCSTTCGLGVATRVSNQNRF 769
Q LPA + + VA G C E +T W CS +CG+G +TRV+N+N
Sbjct: 176 NETGTLGDLQTLPAYRTEATVGVAISDSGTNCIEQTTEWSACSKSCGMGFSTRVTNRNPH 235
Query: 770 CRLETQRRLCLPGPC 814
C + Q RLCL PC
Sbjct: 236 CEMVKQTRLCLVRPC 250
>ref|XP_001927775.1| PREDICTED: protein CYR61 [Sus scrofa].
Length = 382
Score = 177 bits (450), Expect = 6e-45
Identities = 88/235 (37%), Positives = 120/235 (51%), Gaps = 43/235 (18%)
Frame = +2
Query: 254 LVLDGCNCCRVCARRLGEPCDHLHICDSSQGLVCQLGAGPGSRGAVCLWGEDDGSCEVNG 433
LV DGC CC+VCA++L E C CD ++GL C GA P ++ +C + CE N
Sbjct: 45 LVGDGCGCCKVCAKQLNEDCSKTQPCDHTKGLECNFGASPTAQKGICRAQSEGRPCEYNS 104
Query: 434 RLYRDGETFQPHCRIRCRCEDGGFTCVPLCSEDVRLPSWDCPHPRRVEVPGKCCPEWVCD 613
R+Y++GE+FQP+C+ +C C DG CVPLC +++ LP CP+PR V+V G+CC EW+CD
Sbjct: 105 RIYQNGESFQPNCKHQCTCIDGAVGCVPLCPQELSLPDLGCPNPRLVKVTGQCCEEWLCD 164
Query: 614 P----------QPLPARGPQFSG--------------------------------LVAPP 667
LP + F L PP
Sbjct: 165 EDGAKDPMDDRDGLPGKALAFDASEVELTRNNELIAFGKGGSLKRLPVFRAEPRVLYTPP 224
Query: 668 VPGIPCPEWSTAWGPCSTTCGLGVATRVSNQNRFCRLETQRRLCLPGPC-PPARG 829
+ G C +T+W CS TCG G++TRV+N N CRL + R+C PC PA G
Sbjct: 225 LLGQKCIVQTTSWSQCSKTCGTGISTRVTNDNPDCRLVKETRICEVRPCGQPAFG 279
>ref|XP_001927510.1| PREDICTED: WNT1-inducible-signaling pathway protein 3 [Sus scrofa].
Length = 354
Score = 114 bits (284), Expect = 1e-25
Identities = 65/199 (32%), Positives = 92/199 (46%), Gaps = 12/199 (6%)
Frame = +2
Query: 254 LVLDGCNCCRVCARRLGEPCDHLHICDSSQGLVCQLGA-GPGSRGAVCLWGEDDGSCEVN 430
LV DGC CC++CA++ G+ C+ +CD +GL C A GP VC + G CE N
Sbjct: 67 LVRDGCGCCKICAKQPGDTCNEADVCDPHKGLYCDYSADGPWYETGVCAYLVAVG-CEFN 125
Query: 431 GRLYRDGETFQPHCRIRCRCEDGGFTCVPLCSEDVRLPSWDCPHPRRVEVPGKCCPEWVC 610
G Y++G+ FQP+ C C G C PL P+R +
Sbjct: 126 GVHYQNGQVFQPNPLFSCLCVSGAIGCTPLFI------------PKRADNHCSGAKGGKK 173
Query: 611 DPQPLPARGPQFSGL-----VAPPVPGIP------CPEWSTAWGPCSTTCGLGVATRVSN 757
Q RGP L P +P C +T W PCS TCG+G++ R++N
Sbjct: 174 THQSKCGRGPSQQQLSTSYRTMPAYRNLPLIWKRKCLVQATKWTPCSRTCGMGISNRITN 233
Query: 758 QNRFCRLETQRRLCLPGPC 814
+N C++ ++RLC PC
Sbjct: 234 ENSNCQMRNEKRLCYIQPC 252
>ref|XP_003361345.1| PREDICTED: WNT1-inducible-signaling pathway protein 1-like [Sus
scrofa].
Length = 294
Score = 54.3 bits (129), Expect = 1e-07
Identities = 39/140 (27%), Positives = 56/140 (40%), Gaps = 23/140 (16%)
Frame = +2
Query: 464 PHCRIRCRCEDGGFTCVPLCSEDV------------RLPSWDCPHPRRVEVPGKCCPEWV 607
P C + G C +C++ + +L P VPG+CC +WV
Sbjct: 49 PRCPLGVSLITDGCECCKMCAQQLGDNLRMGIYAINQLLGLRGPRLCHSXVPGRCCEQWV 108
Query: 608 CDPQPLPAR--GPQFSGLVAPPVPGIPCPEWSTAWGP---------CSTTCGLGVATRVS 754
CD R P+ +G + G W+ ST+CGLGV+TR+S
Sbjct: 109 CDDDARRPRKTAPRHTGAFG--LEGADVRGWTEVEAKEEPEEDSQGXSTSCGLGVSTRIS 166
Query: 755 NQNRFCRLETQRRLCLPGPC 814
+ N C E + RLC PC
Sbjct: 167 SVNPRCWPEQESRLCNLRPC 186
>ref|XP_003134743.1| PREDICTED: kielin/chordin-like protein [Sus scrofa].
Length = 1514
Score = 52.0 bits (123), Expect = 5e-07
Identities = 62/232 (26%), Positives = 78/232 (33%), Gaps = 50/232 (21%)
Frame = +2
Query: 284 VCARRLGEPCDHLHICDSSQGLV-CQLGAGPGSRGAVCLWG----EDDGSCEVNGRLYRD 448
V R P D C +G CQ P + A L G + C G+ Y +
Sbjct: 501 VDGERFSHPRDPCQECQCQEGQAHCQPRVCPTASCAHPLPGPCCQHNCNGCAFGGKEYPN 560
Query: 449 GETFQPH----CRIRCRCEDGGFTCVPLCSEDVRLPSWDCPHPRRVEVPGKCCPEWVCDP 616
G F PH CR+ CRC G C+ R P CP P + PGKCCP+ P
Sbjct: 561 GADF-PHPSDPCRL-CRCLSGNVQCLAR-----RCPPLLCPEPAML--PGKCCPQCPATP 611
Query: 617 QPLPARGPQ--------FSGLVAP----------------PVPGIPCPEWSTAWGPCSTT 724
P G + FS P P P +PC GPC +
Sbjct: 612 SSCPRPGSKVPAHHQEHFSPPDDPCHLCLCLDGSVSCQRLPCPPVPCTH--PRQGPCCPS 669
Query: 725 CG--------LGVATRVSNQNRFCR--------LETQRRLCLPGPCP-PARG 829
C R + C + + R+C P CP PARG
Sbjct: 670 CDGCQYQGKEFTSGERFPSPTARCHVCLCWEGSVRCEPRVCAPAQCPFPARG 721
Score = 49.7 bits (117), Expect = 3e-06
Identities = 43/116 (37%), Positives = 52/116 (44%), Gaps = 4/116 (3%)
Frame = +2
Query: 278 CRVCARRLGEPCDHLHICDSSQGLVCQLGAGP--GSRGAVCLWGEDDGSCEVNGRLYRDG 451
CR+C G H C S +C A P G+ VC DG C +NG+ YR G
Sbjct: 222 CRICQCLEGHIRCRQHECAS----LCPYPARPLPGTCCPVC-----DG-CFLNGQEYRSG 271
Query: 452 ETFQPH--CRIRCRCEDGGFTCVPLCSEDVRLPSWDCPHPRRVEVPGKCCPEWVCD 613
E C CRC +G C PL P+ C +P R+ PGKCCP VCD
Sbjct: 272 EPVGSGDPCS-HCRCANGSVQCEPL-----PCPATPCRYPGRI--PGKCCP--VCD 317
Score = 48.5 bits (114), Expect = 6e-06
Identities = 37/110 (33%), Positives = 48/110 (43%), Gaps = 3/110 (2%)
Frame = +2
Query: 278 CRVCARRLGEPCDHLHICDSSQGLVCQLGAGPGSRGAVCLWGEDDGSCEVNGRLYRDGET 457
C C+ + G P +C + CQ P GA C E SC +G++Y +G+
Sbjct: 395 CMACSCQAGVPMCRALLCSPAP---CQHPTRP--LGACCPSCE---SCTYHGQVYANGQN 446
Query: 458 F---QPHCRIRCRCEDGGFTCVPLCSEDVRLPSWDCPHPRRVEVPGKCCP 598
F C CRCEDG TC V P C P+R PG+CCP
Sbjct: 447 FTDADSPCHA-CRCEDGTVTC-----SLVNCPPTTCARPQR--GPGQCCP 488
>ref|NP_001230226.1| collagen alpha-1(III) chain [Sus scrofa].
Length = 1466
Score = 47.8 bits (112), Expect = 1e-05
Identities = 37/99 (37%), Positives = 49/99 (49%), Gaps = 8/99 (8%)
Frame = +2
Query: 410 DGSCEVNGRLYRDGETFQPH-CRIRCRCEDGGFTCVPLCSEDVRLPSWDCPHPRRVEVP- 583
+G C G+ Y D + ++P C+I C C+ G C + +D L DCP+P E+P
Sbjct: 30 EGGCSHLGQSYADRDVWKPEPCQI-CVCDSGSVLCDDIICDDQEL---DCPNP---EIPF 82
Query: 584 GKCCPEWVCDPQP--LPARGPQFSGLVAPP----VPGIP 682
G+CC VC PQP P R P G P PGIP
Sbjct: 83 GECCA--VC-PQPPTAPTRPPNGHGPQGPKGDPGPPGIP 118
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 30,129,399
Number of extensions: 1104008
Number of successful extensions: 7086
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 6891
Number of HSP's successfully gapped: 13
Length of query: 338
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 238
Effective length of database: 8,854,232
Effective search space: 2107307216
Effective search space used: 2107307216
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003485
(1014 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr17 718 0.0
>Sscrofa_Chr17
|| Length = 69701581
Score = 718 bits (362), Expect = 0.0
Identities = 378/382 (98%), Gaps = 1/382 (0%)
Strand = Plus / Plus
Query: 634 aggaccccagttttctggccttgtcgctcccccagtccctggcatcccctgcccagaatg 693
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52682176 aggaccccagttttctggccttgtcgctcccccagtccctggcatcccctgcccagaatg 52682235
Query: 694 gagcacagcctggggcccctgttcaaccacctgtgggctgggcgtggccacccgggtgtc 753
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52682236 gagcacagcctggggcccctgttcaaccacctgtgggctgggcgtggccacccgggtgtc 52682295
Query: 754 caaccagaaccgcttttgccgcctggagacccagcgccgcctgtgcctacctggaccctg 813
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52682296 caaccagaaccgcttttgccgcctggagacccagcgccgcctgtgcctacctggaccctg 52682355
Query: 814 cccacccgccaggggccacagcccacggaacagtgccttttagagctgggctgagaatgg 873
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 52682356 cccacccgccaggggccacagcccacggaacagtgccttttagagccgggctgagaatgg 52682415
Query: 874 agactttgtgtcacctccccagtgggcaatctggcctgccggccaccgtccagcttgggt 933
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52682416 agactttgtgtcacctccccagtgggcaatctggcctgccggccaccgtccagcttgggt 52682475
Query: 934 ctaccatccgggccctggaggaaaagagttccc-agccagctggtccgtctggaccctga 992
|||||||||||||||||||||| | |||||||| ||||||||||||||||||||||||||
Sbjct: 52682476 ctaccatccgggccctggaggagaggagttcccaagccagctggtccgtctggaccctga 52682535
Query: 993 gctacagccggatgcatgacct 1014
||||||||||||||||||||||
Sbjct: 52682536 gctacagccggatgcatgacct 52682557
Score = 472 bits (238), Expect = e-130
Identities = 238/238 (100%)
Strand = Plus / Plus
Query: 399 ggggagaggatgacggcagctgcgaggtgaacggccgcctgtaccgggacggggagacct 458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52679367 ggggagaggatgacggcagctgcgaggtgaacggccgcctgtaccgggacggggagacct 52679426
Query: 459 tccagccccactgcaggattcgctgccgctgcgaggacggcggtttcacctgcgtgcccc 518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52679427 tccagccccactgcaggattcgctgccgctgcgaggacggcggtttcacctgcgtgcccc 52679486
Query: 519 tgtgcagtgaggacgtgcggctgcccagctgggactgcccgcaccccaggagggtggagg 578
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52679487 tgtgcagtgaggacgtgcggctgcccagctgggactgcccgcaccccaggagggtggagg 52679546
Query: 579 tccccggcaagtgctgccccgagtgggtgtgcgacccccagcccctcccagcaagagg 636
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52679547 tccccggcaagtgctgccccgagtgggtgtgcgacccccagcccctcccagcaagagg 52679604
Score = 420 bits (212), Expect = e-115
Identities = 218/220 (99%)
Strand = Plus / Plus
Query: 180 aggtgtgtgcccagctatgccccacaccatgtgcctgtccatggccaccaccccgatgcc 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52672825 aggtgtgtgcccagctatgccccacaccatgtgcctgtccatggccaccaccccgatgcc 52672884
Query: 240 caccgggggtgcccctggtgctggacggctgcaactgctgccgggtatgtgcacggcggc 299
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 52672885 caccaggggtgcccctggtgctggatggctgcaactgctgccgggtatgtgcacggcggc 52672944
Query: 300 tgggggagccctgcgaccacctccacatctgcgactccagccagggcctggtctgccagc 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52672945 tgggggagccctgcgaccacctccacatctgcgactccagccagggcctggtctgccagc 52673004
Query: 360 tcggggcgggccctggcagccggggggccgtgtgcctctg 399
||||||||||||||||||||||||||||||||||||||||
Sbjct: 52673005 tcggggcgggccctggcagccggggggccgtgtgcctctg 52673044
Score = 194 bits (98), Expect = 7e-47
Identities = 98/98 (100%)
Strand = Plus / Plus
Query: 86 caggctcaaagctggctccgtggggaacacggtgacatgggaggcacagcacagactctc 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52668391 caggctcaaagctggctccgtggggaacacggtgacatgggaggcacagcacagactctc 52668450
Query: 146 atcctggccttctccctcctctgcctcctctccaaggt 183
||||||||||||||||||||||||||||||||||||||
Sbjct: 52668451 atcctggccttctccctcctctgcctcctctccaaggt 52668488
Score = 85.7 bits (43), Expect = 4e-14
Identities = 43/43 (100%)
Strand = Plus / Plus
Query: 47 tggcaagcacccccttggtgacctccacggtctcaccttcagg 89
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52668191 tggcaagcacccccttggtgacctccacggtctcaccttcagg 52668233
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 25,860,111
Number of extensions: 285
Number of successful extensions: 285
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 284
Number of HSP's successfully gapped: 5
Length of query: 1014
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 993
Effective length of database: 2,808,413,156
Effective search space: 2788754263908
Effective search space used: 2788754263908
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)