Animal-Genome cDNA 20110601C-003681


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-003681
         (1300 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_002699331.1| PREDICTED: fatty acid desaturase 1 [Bos taur...   597   e-170
Alignment   gi|XP_612398.4| PREDICTED: fatty acid desaturase 1 [Bos taurus].     597   e-170
Alignment   gi|NP_001076913.1| fatty acid desaturase 2 [Bos taurus].             441   e-124
Alignment   gi|NP_001077160.1| fatty acid desaturase 3 [Bos taurus].             379   e-105
Alignment   gi|XP_002693779.1| PREDICTED: fatty acid desaturase 2-like [Bos...   358   8e-99
Alignment   gi|XP_871845.3| PREDICTED: fatty acid desaturase 2-like [Bos ta...   357   1e-98
Alignment   gi|XP_002693751.1| PREDICTED: rCG26407-like [Bos taurus].            355   5e-98
Alignment   gi|XP_599338.4| PREDICTED: rCG26407-like [Bos taurus].               355   5e-98

>ref|XP_002699331.1| PREDICTED: fatty acid desaturase 1 [Bos taurus].
          Length = 440

 Score =  597 bits (1538), Expect = e-170
 Identities = 271/311 (87%), Positives = 283/311 (90%)
 Frame = +3

Query: 3    MHLLHILLLDVTAWLILWLFGTSFVPFVLCAVLLSTVQAQAGWLQHDLGHLSVFSTSTWN 182
            ++LLHILLLDV AWL LWLFGTS VPF+LC+VLLS VQAQAGWLQHD GHLSVF TS WN
Sbjct: 130  LYLLHILLLDVAAWLTLWLFGTSLVPFLLCSVLLSIVQAQAGWLQHDFGHLSVFGTSKWN 189

Query: 183  HLVHHFVIGHLKGAPASWWNHLHFQHHAKPNCFCKDPDINMHPFFFALGKILSVELGKQK 362
            HL+HHFVIGHLKGAPASWWNHLHFQHHAKPNCF KDPDINMHPFFFALGK+LSVELGKQK
Sbjct: 190  HLLHHFVIGHLKGAPASWWNHLHFQHHAKPNCFRKDPDINMHPFFFALGKVLSVELGKQK 249

Query: 363  KKYMPYDHQHKYFFLIGPPALLPAYFQWYIFYFVIKRKKWVDLAWMTSFYVRIFLTYVPX 542
            KKYMPY+HQHKYFFLIGPPALLP YFQWYIFYFVI RKKWVDLAWM +FYVRIFLTYVP 
Sbjct: 250  KKYMPYNHQHKYFFLIGPPALLPVYFQWYIFYFVIHRKKWVDLAWMITFYVRIFLTYVPL 309

Query: 543  XXXXXXXXXXXXVRFLESNWFVWVTQMNHIPMHIDHDRNVDWFSMQVRATCNVHKSAFND 722
                        VRFLESNWFVWVTQMNHIPMHIDHDRN+DW S Q++ATCNVHKSAFND
Sbjct: 310  LGLKGFLGLVFMVRFLESNWFVWVTQMNHIPMHIDHDRNMDWVSTQLQATCNVHKSAFND 369

Query: 723  WFSGHLNFQIEHHLFPRMPRHNYHKVAPLVQSLCAKHGIEYQSKPLLSAFADIVHSLKES 902
            WFSGHLNFQIEHHLFP MPRHNYHKVAPLVQSLCAKHGI+YQSKPL SAFADIVHSLKES
Sbjct: 370  WFSGHLNFQIEHHLFPTMPRHNYHKVAPLVQSLCAKHGIKYQSKPLFSAFADIVHSLKES 429

Query: 903  GQLWLDAYLHQ 935
            GQLWLDAYLHQ
Sbjct: 430  GQLWLDAYLHQ 440


>ref|XP_612398.4| PREDICTED: fatty acid desaturase 1 [Bos taurus].
          Length = 440

 Score =  597 bits (1538), Expect = e-170
 Identities = 271/311 (87%), Positives = 283/311 (90%)
 Frame = +3

Query: 3    MHLLHILLLDVTAWLILWLFGTSFVPFVLCAVLLSTVQAQAGWLQHDLGHLSVFSTSTWN 182
            ++LLHILLLDV AWL LWLFGTS VPF+LC+VLLS VQAQAGWLQHD GHLSVF TS WN
Sbjct: 130  LYLLHILLLDVAAWLTLWLFGTSLVPFLLCSVLLSIVQAQAGWLQHDFGHLSVFGTSKWN 189

Query: 183  HLVHHFVIGHLKGAPASWWNHLHFQHHAKPNCFCKDPDINMHPFFFALGKILSVELGKQK 362
            HL+HHFVIGHLKGAPASWWNHLHFQHHAKPNCF KDPDINMHPFFFALGK+LSVELGKQK
Sbjct: 190  HLLHHFVIGHLKGAPASWWNHLHFQHHAKPNCFRKDPDINMHPFFFALGKVLSVELGKQK 249

Query: 363  KKYMPYDHQHKYFFLIGPPALLPAYFQWYIFYFVIKRKKWVDLAWMTSFYVRIFLTYVPX 542
            KKYMPY+HQHKYFFLIGPPALLP YFQWYIFYFVI RKKWVDLAWM +FYVRIFLTYVP 
Sbjct: 250  KKYMPYNHQHKYFFLIGPPALLPVYFQWYIFYFVIHRKKWVDLAWMITFYVRIFLTYVPL 309

Query: 543  XXXXXXXXXXXXVRFLESNWFVWVTQMNHIPMHIDHDRNVDWFSMQVRATCNVHKSAFND 722
                        VRFLESNWFVWVTQMNHIPMHIDHDRN+DW S Q++ATCNVHKSAFND
Sbjct: 310  LGLKGFLGLVFMVRFLESNWFVWVTQMNHIPMHIDHDRNMDWVSTQLQATCNVHKSAFND 369

Query: 723  WFSGHLNFQIEHHLFPRMPRHNYHKVAPLVQSLCAKHGIEYQSKPLLSAFADIVHSLKES 902
            WFSGHLNFQIEHHLFP MPRHNYHKVAPLVQSLCAKHGI+YQSKPL SAFADIVHSLKES
Sbjct: 370  WFSGHLNFQIEHHLFPTMPRHNYHKVAPLVQSLCAKHGIKYQSKPLFSAFADIVHSLKES 429

Query: 903  GQLWLDAYLHQ 935
            GQLWLDAYLHQ
Sbjct: 430  GQLWLDAYLHQ 440


>ref|NP_001076913.1| fatty acid desaturase 2 [Bos taurus].
          Length = 444

 Score =  441 bits (1133), Expect = e-124
 Identities = 198/311 (63%), Positives = 236/311 (75%)
 Frame = +3

Query: 3    MHLLHILLLDVTAWLILWLFGTSFVPFVLCAVLLSTVQAQAGWLQHDLGHLSVFSTSTWN 182
            +HL HI+ ++  AW  L+ FG  ++P ++ A +L+T QAQAGWLQHD GHLSV+  S WN
Sbjct: 135  LHLAHIIAMESIAWFTLFYFGNGWIPTIITAFVLATSQAQAGWLQHDYGHLSVYKKSMWN 194

Query: 183  HLVHHFVIGHLKGAPASWWNHLHFQHHAKPNCFCKDPDINMHPFFFALGKILSVELGKQK 362
            H+VH FVIGHLKGA A+WWNH HFQHHAKPN F KDPD+NM    F LG+   +E GK+K
Sbjct: 195  HIVHKFVIGHLKGASANWWNHRHFQHHAKPNIFHKDPDVNML-HVFVLGEWQPIEYGKKK 253

Query: 363  KKYMPYDHQHKYFFLIGPPALLPAYFQWYIFYFVIKRKKWVDLAWMTSFYVRIFLTYVPX 542
             KY+PY+HQH+YFFLIGPP L+P YFQ+ I   +I RK W DLAW  S+Y R F+TY+P 
Sbjct: 254  LKYLPYNHQHEYFFLIGPPLLIPLYFQYQIIMTMIVRKYWADLAWAISYYTRFFITYIPF 313

Query: 543  XXXXXXXXXXXXVRFLESNWFVWVTQMNHIPMHIDHDRNVDWFSMQVRATCNVHKSAFND 722
                        +RFLES+WFVWVTQMNHI M ID +   DWFS Q+ ATCNV +S FND
Sbjct: 314  YGVLGSILFLNFIRFLESHWFVWVTQMNHIVMEIDREPYRDWFSSQLAATCNVEQSFFND 373

Query: 723  WFSGHLNFQIEHHLFPRMPRHNYHKVAPLVQSLCAKHGIEYQSKPLLSAFADIVHSLKES 902
            WFSGHLNFQIEHHLFP MPRHN HK+APLV+SLCAKHGIEYQ KPLL A  DI+ SL++S
Sbjct: 374  WFSGHLNFQIEHHLFPTMPRHNLHKIAPLVRSLCAKHGIEYQEKPLLRALQDIIGSLRKS 433

Query: 903  GQLWLDAYLHQ 935
            GQLWLDAYLH+
Sbjct: 434  GQLWLDAYLHK 444


>ref|NP_001077160.1| fatty acid desaturase 3 [Bos taurus].
          Length = 443

 Score =  379 bits (973), Expect = e-105
 Identities = 173/307 (56%), Positives = 218/307 (71%)
 Frame = +3

Query: 15   HILLLDVTAWLILWLFGTSFVPFVLCAVLLSTVQAQAGWLQHDLGHLSVFSTSTWNHLVH 194
            HIL ++V AWL++++ G  +VP  L A++L+  QAQ+  LQHDLGH S+F  S WNHL  
Sbjct: 139  HILAMEVLAWLMIYMLGPGWVPSTLAALILAISQAQSWCLQHDLGHTSIFRNSRWNHLAQ 198

Query: 195  HFVIGHLKGAPASWWNHLHFQHHAKPNCFCKDPDINMHPFFFALGKILSVELGKQKKKYM 374
             FV+G LKG  A WWN  HFQHHAKPN F KDPD+ + P F  LG+  SVE GK+K++Y+
Sbjct: 199  QFVMGQLKGFSAHWWNFRHFQHHAKPNIFHKDPDVTVAPVFL-LGES-SVEYGKKKRRYL 256

Query: 375  PYDHQHKYFFLIGPPALLPAYFQWYIFYFVIKRKKWVDLAWMTSFYVRIFLTYVPXXXXX 554
            PY+HQH YFFLIGPP L    F+     +++   +W+DL W  SFY R  L+Y+P     
Sbjct: 257  PYNHQHLYFFLIGPPLLTLVNFEVENLAYMLVCMQWMDLLWAASFYARFLLSYIPFYGIP 316

Query: 555  XXXXXXXXVRFLESNWFVWVTQMNHIPMHIDHDRNVDWFSMQVRATCNVHKSAFNDWFSG 734
                    VR LES+WFVW+TQMNHIP  I H+++ DW S Q+ ATCNV  S F DWFSG
Sbjct: 317  GALLLFVAVRVLESHWFVWITQMNHIPREIGHEKHRDWASSQLAATCNVEPSLFIDWFSG 376

Query: 735  HLNFQIEHHLFPRMPRHNYHKVAPLVQSLCAKHGIEYQSKPLLSAFADIVHSLKESGQLW 914
            HLNFQIEHHLFP MPRHNY +VAPLV++LCAKHG+ Y+ KP L+A  DI+ SLK+SG +W
Sbjct: 377  HLNFQIEHHLFPTMPRHNYRRVAPLVKALCAKHGLSYEVKPFLTALVDIIRSLKKSGNVW 436

Query: 915  LDAYLHQ 935
            L+AYLHQ
Sbjct: 437  LEAYLHQ 443


>ref|XP_002693779.1| PREDICTED: fatty acid desaturase 2-like [Bos taurus].
          Length = 485

 Score =  358 bits (918), Expect = 8e-99
 Identities = 158/308 (51%), Positives = 211/308 (68%)
 Frame = +3

Query: 3    MHLLHILLLDVTAWLILWLFGTSFVPFVLCAVLLSTVQAQAGWLQHDLGHLSVFSTSTWN 182
            +HL  +L+L+  AW+I+W FG+ ++  +  + LL+  QAQ  +LQHD GHL +F    WN
Sbjct: 173  LHLAQVLILEALAWVIVWHFGSGWLITIFISFLLTVAQAQGSFLQHDTGHLCIFKKPKWN 232

Query: 183  HLVHHFVIGHLKGAPASWWNHLHFQHHAKPNCFCKDPDINMHPFFFALGKILSVELGKQK 362
             L+  FV+ HLKG  A WWN+ HFQHH KPN + KDPDI++ PFF  +G +  V+ GK K
Sbjct: 233  RLMQKFVMSHLKGISAKWWNNRHFQHHVKPNIYSKDPDIDVGPFF-VIGDLQPVKYGKNK 291

Query: 363  KKYMPYDHQHKYFFLIGPPALLPAYFQWYIFYFVIKRKKWVDLAWMTSFYVRIFLTYVPX 542
             K++ Y+ QH YF +   P L+P YF       + +R+ W D+AW+++FY+R F+T+ P 
Sbjct: 292  IKFINYEKQHLYFHVSWVPFLIPVYFNLDSILAMYRRRDWEDIAWVSTFYIRHFITFGPF 351

Query: 543  XXXXXXXXXXXXVRFLESNWFVWVTQMNHIPMHIDHDRNVDWFSMQVRATCNVHKSAFND 722
                        V+ LES W  ++TQMNHIPM I  + N DWFS QV  TCNV +S FND
Sbjct: 352  YGIFGTMVLIYLVKLLESLWVAYITQMNHIPMKISTEENQDWFSSQVLTTCNVEQSFFND 411

Query: 723  WFSGHLNFQIEHHLFPRMPRHNYHKVAPLVQSLCAKHGIEYQSKPLLSAFADIVHSLKES 902
            WF+GHLNFQIEHHLFP MPRHNYHKVAPLV+SLCAKHG+ Y +KP+L AF D++ +LK+S
Sbjct: 412  WFTGHLNFQIEHHLFPTMPRHNYHKVAPLVKSLCAKHGLPYVNKPILKAFGDVIRALKKS 471

Query: 903  GQLWLDAY 926
            G LW +AY
Sbjct: 472  GALWKEAY 479


>ref|XP_871845.3| PREDICTED: fatty acid desaturase 2-like [Bos taurus].
          Length = 485

 Score =  357 bits (916), Expect = 1e-98
 Identities = 158/308 (51%), Positives = 211/308 (68%)
 Frame = +3

Query: 3    MHLLHILLLDVTAWLILWLFGTSFVPFVLCAVLLSTVQAQAGWLQHDLGHLSVFSTSTWN 182
            +HL  +L+L+  AW+I+W FG+ ++  +  + LL+  QAQ  +LQHD GHL +F    WN
Sbjct: 173  LHLAQVLILEALAWVIVWHFGSGWLITIFISFLLTVAQAQGSFLQHDTGHLCIFKKPKWN 232

Query: 183  HLVHHFVIGHLKGAPASWWNHLHFQHHAKPNCFCKDPDINMHPFFFALGKILSVELGKQK 362
             L+  FV+ HLKG  A WWN+ HFQHH KPN + KDPDI++ PFF  +G +  V+ GK K
Sbjct: 233  RLMQKFVMSHLKGISAKWWNNRHFQHHVKPNIYSKDPDIDVGPFF-VIGDLQPVKYGKNK 291

Query: 363  KKYMPYDHQHKYFFLIGPPALLPAYFQWYIFYFVIKRKKWVDLAWMTSFYVRIFLTYVPX 542
             K++ Y+ QH YF +   P L+P YF       + +R+ W D+AW+++FY+R F+T+ P 
Sbjct: 292  IKFINYEKQHLYFHVSWVPFLIPVYFNLDSILAMYRRRDWEDIAWVSTFYIRHFITFGPF 351

Query: 543  XXXXXXXXXXXXVRFLESNWFVWVTQMNHIPMHIDHDRNVDWFSMQVRATCNVHKSAFND 722
                        V+ LES W  +VTQMNHIPM +  + N DWFS QV  TCNV +S FND
Sbjct: 352  YGIFGTMVLIYLVKLLESLWVAYVTQMNHIPMKMSTEENQDWFSSQVLTTCNVEQSFFND 411

Query: 723  WFSGHLNFQIEHHLFPRMPRHNYHKVAPLVQSLCAKHGIEYQSKPLLSAFADIVHSLKES 902
            WF+GHLNFQIEHHLFP MPRHNYHKVAPLV+SLCAKHG+ Y +KP+L AF D++ +LK+S
Sbjct: 412  WFTGHLNFQIEHHLFPTMPRHNYHKVAPLVKSLCAKHGLPYVNKPILKAFGDVIRALKKS 471

Query: 903  GQLWLDAY 926
            G LW +AY
Sbjct: 472  GALWKEAY 479


>ref|XP_002693751.1| PREDICTED: rCG26407-like [Bos taurus].
          Length = 485

 Score =  355 bits (911), Expect = 5e-98
 Identities = 161/308 (52%), Positives = 210/308 (68%)
 Frame = +3

Query: 3    MHLLHILLLDVTAWLILWLFGTSFVPFVLCAVLLSTVQAQAGWLQHDLGHLSVFSTSTWN 182
            +HL  +L+L+  AW+I+W FG+ ++  +    LL+  QAQ  +LQHD+GHLSVF  S WN
Sbjct: 173  LHLAQVLILEALAWVIVWHFGSGWLITIFIYFLLTVAQAQDSFLQHDMGHLSVFKKSKWN 232

Query: 183  HLVHHFVIGHLKGAPASWWNHLHFQHHAKPNCFCKDPDINMHPFFFALGKILSVELGKQK 362
             L+ +FVIGHLKG  A WWN+ H QHH K N + KDPD+   PFF  +G +  V+ GK K
Sbjct: 233  RLMQNFVIGHLKGFSAKWWNNQHSQHHVKTNIYPKDPDVVFGPFF-VVGDLQPVKYGKNK 291

Query: 363  KKYMPYDHQHKYFFLIGPPALLPAYFQWYIFYFVIKRKKWVDLAWMTSFYVRIFLTYVPX 542
             KY+ Y+ QH YF  +G   L+P Y        + +R  W D+AW+++FY+R F+T+ P 
Sbjct: 292  IKYIDYEKQHLYFCTVGAALLMPVYLNLDSIRAMYRRGYWEDIAWVSTFYIRYFITFGPF 351

Query: 543  XXXXXXXXXXXXVRFLESNWFVWVTQMNHIPMHIDHDRNVDWFSMQVRATCNVHKSAFND 722
                        V+ LES W  +VTQM+HIPM +  + N DWFS QV ATCNV +S FND
Sbjct: 352  YGIFGTLVLIYLVKLLESLWVAYVTQMSHIPMKMSTEENQDWFSSQVLATCNVEQSFFND 411

Query: 723  WFSGHLNFQIEHHLFPRMPRHNYHKVAPLVQSLCAKHGIEYQSKPLLSAFADIVHSLKES 902
            WF+GHLNFQIEHHLFP MPRHNYHKVAPLV+SLCAKHG+ Y +KP+L AF DI+ +LK+S
Sbjct: 412  WFTGHLNFQIEHHLFPTMPRHNYHKVAPLVKSLCAKHGLPYVNKPILKAFGDIIRALKKS 471

Query: 903  GQLWLDAY 926
              LW+DAY
Sbjct: 472  AALWMDAY 479


>ref|XP_599338.4| PREDICTED: rCG26407-like [Bos taurus].
          Length = 485

 Score =  355 bits (911), Expect = 5e-98
 Identities = 161/308 (52%), Positives = 210/308 (68%)
 Frame = +3

Query: 3    MHLLHILLLDVTAWLILWLFGTSFVPFVLCAVLLSTVQAQAGWLQHDLGHLSVFSTSTWN 182
            +HL  +L+L+  AW+I+W FG+ ++  +    LL+  QAQ  +LQHD+GHLSVF  S WN
Sbjct: 173  LHLAQVLILEALAWVIVWHFGSGWLITIFIYFLLTVAQAQDSFLQHDMGHLSVFKKSKWN 232

Query: 183  HLVHHFVIGHLKGAPASWWNHLHFQHHAKPNCFCKDPDINMHPFFFALGKILSVELGKQK 362
             L+ +FVIGHLKG  A WWN+ H QHH K N + KDPD+   PFF  +G +  V+ GK K
Sbjct: 233  RLMQNFVIGHLKGFSAKWWNNQHSQHHVKTNIYPKDPDVVFGPFF-VVGDLQPVKYGKNK 291

Query: 363  KKYMPYDHQHKYFFLIGPPALLPAYFQWYIFYFVIKRKKWVDLAWMTSFYVRIFLTYVPX 542
             KY+ Y+ QH YF  +G   L+P Y        + +R  W D+AW+++FY+R F+T+ P 
Sbjct: 292  IKYIDYEKQHLYFCTVGAALLMPVYLNLDSIRAMYRRGYWEDIAWVSTFYIRYFITFGPF 351

Query: 543  XXXXXXXXXXXXVRFLESNWFVWVTQMNHIPMHIDHDRNVDWFSMQVRATCNVHKSAFND 722
                        V+ LES W  +VTQM+HIPM +  + N DWFS QV ATCNV +S FND
Sbjct: 352  YGIFGTLVLIYLVKLLESLWVAYVTQMSHIPMKMSTEENQDWFSSQVLATCNVEQSFFND 411

Query: 723  WFSGHLNFQIEHHLFPRMPRHNYHKVAPLVQSLCAKHGIEYQSKPLLSAFADIVHSLKES 902
            WF+GHLNFQIEHHLFP MPRHNYHKVAPLV+SLCAKHG+ Y +KP+L AF DI+ +LK+S
Sbjct: 412  WFTGHLNFQIEHHLFPTMPRHNYHKVAPLVKSLCAKHGLPYVNKPILKAFGDIIRALKKS 471

Query: 903  GQLWLDAY 926
              LW+DAY
Sbjct: 472  AALWMDAY 479


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 56,005,605
Number of extensions: 1685144
Number of successful extensions: 5651
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 5634
Number of HSP's successfully gapped: 8
Length of query: 433
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 328
Effective length of database: 14,207,134
Effective search space: 4659939952
Effective search space used: 4659939952
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-003681
         (1300 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_540914.2| PREDICTED: similar to fatty acid desaturase 1 i...   591   e-169
Alignment   gi|XP_867837.1| PREDICTED: similar to fatty acid desaturase 1 i...   557   e-159
Alignment   gi|XP_540913.2| PREDICTED: similar to fatty acid desaturase 2 [...   437   e-123
Alignment   gi|XP_533270.2| PREDICTED: similar to fatty acid desaturase 3 [...   387   e-107
Alignment   gi|XP_855112.1| PREDICTED: similar to fatty acid desaturase 1 [...   288   6e-78

>ref|XP_540914.2| PREDICTED: similar to fatty acid desaturase 1 isoform 1 [Canis
            familiaris].
          Length = 442

 Score =  591 bits (1523), Expect = e-169
 Identities = 269/311 (86%), Positives = 283/311 (90%)
 Frame = +3

Query: 3    MHLLHILLLDVTAWLILWLFGTSFVPFVLCAVLLSTVQAQAGWLQHDLGHLSVFSTSTWN 182
            ++LLHILLLDV AWL LW FGTS VPF+LCAVLLSTVQ QAGWLQHD GHLSVFSTSTWN
Sbjct: 132  LYLLHILLLDVAAWLTLWFFGTSLVPFLLCAVLLSTVQTQAGWLQHDFGHLSVFSTSTWN 191

Query: 183  HLVHHFVIGHLKGAPASWWNHLHFQHHAKPNCFCKDPDINMHPFFFALGKILSVELGKQK 362
            HL+HHFVIGHLKGAPASWWNHLHFQHHAKPNCF KDPDI+MHP FFALGKILSVELGKQK
Sbjct: 192  HLLHHFVIGHLKGAPASWWNHLHFQHHAKPNCFLKDPDISMHPSFFALGKILSVELGKQK 251

Query: 363  KKYMPYDHQHKYFFLIGPPALLPAYFQWYIFYFVIKRKKWVDLAWMTSFYVRIFLTYVPX 542
            KKYMPY+HQHKYFFLIGPPALLP YFQWYIFYFVI+RKKWVDLAWM +FY RIFLTYVP 
Sbjct: 252  KKYMPYNHQHKYFFLIGPPALLPLYFQWYIFYFVIQRKKWVDLAWMMTFYARIFLTYVPF 311

Query: 543  XXXXXXXXXXXXVRFLESNWFVWVTQMNHIPMHIDHDRNVDWFSMQVRATCNVHKSAFND 722
                        VRFLES WFVWVTQMNHIPMHID+DRN+DW S Q+RATCNVH+SAFND
Sbjct: 312  LGLKGVLGLFFMVRFLESIWFVWVTQMNHIPMHIDYDRNMDWVSTQLRATCNVHRSAFND 371

Query: 723  WFSGHLNFQIEHHLFPRMPRHNYHKVAPLVQSLCAKHGIEYQSKPLLSAFADIVHSLKES 902
            WFSGHLNFQIEHHLFP MPRHNYHKVAPLVQSLCAKHGIEYQSKPLLSAFADI++SLKES
Sbjct: 372  WFSGHLNFQIEHHLFPTMPRHNYHKVAPLVQSLCAKHGIEYQSKPLLSAFADIIYSLKES 431

Query: 903  GQLWLDAYLHQ 935
            GQLWLDAYLHQ
Sbjct: 432  GQLWLDAYLHQ 442


>ref|XP_867837.1| PREDICTED: similar to fatty acid desaturase 1 isoform 2 [Canis
            familiaris].
          Length = 425

 Score =  557 bits (1435), Expect = e-159
 Identities = 253/294 (86%), Positives = 266/294 (90%)
 Frame = +3

Query: 3    MHLLHILLLDVTAWLILWLFGTSFVPFVLCAVLLSTVQAQAGWLQHDLGHLSVFSTSTWN 182
            ++LLHILLLDV AWL LW FGTS VPF+LCAVLLSTVQ QAGWLQHD GHLSVFSTSTWN
Sbjct: 132  LYLLHILLLDVAAWLTLWFFGTSLVPFLLCAVLLSTVQTQAGWLQHDFGHLSVFSTSTWN 191

Query: 183  HLVHHFVIGHLKGAPASWWNHLHFQHHAKPNCFCKDPDINMHPFFFALGKILSVELGKQK 362
            HL+HHFVIGHLKGAPASWWNHLHFQHHAKPNCF KDPDI+MHP FFALGKILSVELGKQK
Sbjct: 192  HLLHHFVIGHLKGAPASWWNHLHFQHHAKPNCFLKDPDISMHPSFFALGKILSVELGKQK 251

Query: 363  KKYMPYDHQHKYFFLIGPPALLPAYFQWYIFYFVIKRKKWVDLAWMTSFYVRIFLTYVPX 542
            KKYMPY+HQHKYFFLIGPPALLP YFQWYIFYFVI+RKKWVDLAWM +FY RIFLTYVP 
Sbjct: 252  KKYMPYNHQHKYFFLIGPPALLPLYFQWYIFYFVIQRKKWVDLAWMMTFYARIFLTYVPF 311

Query: 543  XXXXXXXXXXXXVRFLESNWFVWVTQMNHIPMHIDHDRNVDWFSMQVRATCNVHKSAFND 722
                        VRFLES WFVWVTQMNHIPMHID+DRN+DW S Q+RATCNVH+SAFND
Sbjct: 312  LGLKGVLGLFFMVRFLESIWFVWVTQMNHIPMHIDYDRNMDWVSTQLRATCNVHRSAFND 371

Query: 723  WFSGHLNFQIEHHLFPRMPRHNYHKVAPLVQSLCAKHGIEYQSKPLLSAFADIV 884
            WFSGHLNFQIEHHLFP MPRHNYHKVAPLVQSLCAKHGIEYQSKPLLSAFADI+
Sbjct: 372  WFSGHLNFQIEHHLFPTMPRHNYHKVAPLVQSLCAKHGIEYQSKPLLSAFADII 425


>ref|XP_540913.2| PREDICTED: similar to fatty acid desaturase 2 [Canis familiaris].
          Length = 472

 Score =  437 bits (1125), Expect = e-123
 Identities = 197/309 (63%), Positives = 237/309 (76%)
 Frame = +3

Query: 9    LLHILLLDVTAWLILWLFGTSFVPFVLCAVLLSTVQAQAGWLQHDLGHLSVFSTSTWNHL 188
            L HI++++  AW I++ FG  ++  V+ A +L+T QAQAGWLQHD GHLSV+  S WNH+
Sbjct: 165  LAHIIVMESIAWFIIFYFGNGWISTVITAFVLATSQAQAGWLQHDYGHLSVYKKSMWNHV 224

Query: 189  VHHFVIGHLKGAPASWWNHLHFQHHAKPNCFCKDPDINMHPFFFALGKILSVELGKQKKK 368
            VH F+IGHLKGA A+WWNH HFQHHAKPN F KDPD+NM    F LG+   +E GK+K K
Sbjct: 225  VHKFIIGHLKGASANWWNHRHFQHHAKPNIFHKDPDVNML-HVFVLGEWQPIEYGKKKLK 283

Query: 369  YMPYDHQHKYFFLIGPPALLPAYFQWYIFYFVIKRKKWVDLAWMTSFYVRIFLTYVPXXX 548
            Y+PY+HQH+YFFLIGPP L+P YFQ+ I   +I R+ WVDLAW  S+YVR F+TY+P   
Sbjct: 284  YLPYNHQHEYFFLIGPPLLIPVYFQYQIIMTMIVRRDWVDLAWAMSYYVRFFITYIPFYG 343

Query: 549  XXXXXXXXXXVRFLESNWFVWVTQMNHIPMHIDHDRNVDWFSMQVRATCNVHKSAFNDWF 728
                      +RFLES+WFVWVTQMNHI M ID +   DWFS Q+ ATCNV +S FNDWF
Sbjct: 344  ILGALLFLNFIRFLESHWFVWVTQMNHIVMEIDREPYRDWFSSQLAATCNVEQSFFNDWF 403

Query: 729  SGHLNFQIEHHLFPRMPRHNYHKVAPLVQSLCAKHGIEYQSKPLLSAFADIVHSLKESGQ 908
            SGHLNFQIEHHLFP MPRHN HKVAPLV+SLCAKHGI+YQ KPLL A  DI+ SLK+SG+
Sbjct: 404  SGHLNFQIEHHLFPTMPRHNLHKVAPLVKSLCAKHGIKYQEKPLLRALQDIIRSLKKSGE 463

Query: 909  LWLDAYLHQ 935
            LWLDAYLH+
Sbjct: 464  LWLDAYLHK 472


>ref|XP_533270.2| PREDICTED: similar to fatty acid desaturase 3 [Canis familiaris].
          Length = 480

 Score =  387 bits (994), Expect = e-107
 Identities = 180/307 (58%), Positives = 220/307 (71%)
 Frame = +3

Query: 15   HILLLDVTAWLILWLFGTSFVPFVLCAVLLSTVQAQAGWLQHDLGHLSVFSTSTWNHLVH 194
            HIL ++V AWLI++LFG  +VP +L A++L+T QAQ   LQHDLGH SVF  S WNH+  
Sbjct: 176  HILAMEVLAWLIIYLFGPGWVPSILAALVLATSQAQCWCLQHDLGHTSVFRKSQWNHVAQ 235

Query: 195  HFVIGHLKGAPASWWNHLHFQHHAKPNCFCKDPDINMHPFFFALGKILSVELGKQKKKYM 374
             FV+G LKG  A WWN  HFQHHAKPN F KDPD+ + P F  LG+  SVE GK+K++Y+
Sbjct: 236  QFVMGQLKGFSAHWWNFRHFQHHAKPNIFHKDPDVTVAPVFL-LGES-SVEYGKKKRRYL 293

Query: 375  PYDHQHKYFFLIGPPALLPAYFQWYIFYFVIKRKKWVDLAWMTSFYVRIFLTYVPXXXXX 554
            PY+HQH YFFLIGPP L    F+     +++   +W DL W TSFY R FL YVP     
Sbjct: 294  PYNHQHLYFFLIGPPLLTLVNFEVENLAYMLVCMRWTDLLWATSFYSRFFLCYVPFYGVP 353

Query: 555  XXXXXXXXVRFLESNWFVWVTQMNHIPMHIDHDRNVDWFSMQVRATCNVHKSAFNDWFSG 734
                    VR LES+WFVW+TQMNHIP  I H+++ DW S Q+ ATCNV  S F DWFSG
Sbjct: 354  GALLLFVAVRVLESHWFVWITQMNHIPKEIGHEKHRDWASSQLAATCNVEPSLFIDWFSG 413

Query: 735  HLNFQIEHHLFPRMPRHNYHKVAPLVQSLCAKHGIEYQSKPLLSAFADIVHSLKESGQLW 914
            HLNFQIEHHLFP MPRHNY +VAPLV++LCAKHG+ Y+ KP L+A  DI+ SLK+SG +W
Sbjct: 414  HLNFQIEHHLFPTMPRHNYRRVAPLVKALCAKHGLNYEVKPFLTALVDIIGSLKKSGDVW 473

Query: 915  LDAYLHQ 935
            L+AYLHQ
Sbjct: 474  LEAYLHQ 480


>ref|XP_855112.1| PREDICTED: similar to fatty acid desaturase 1 [Canis familiaris].
          Length = 176

 Score =  288 bits (738), Expect = 6e-78
 Identities = 131/160 (81%), Positives = 140/160 (87%)
 Frame = +3

Query: 408 IGPPALLPAYFQWYIFYFVIKRKKWVDLAWMTSFYVRIFLTYVPXXXXXXXXXXXXXVRF 587
           IGPPALLP YFQWYIFYFVI+RKKWVDLAWM +FY RIFLTYVP             VRF
Sbjct: 17  IGPPALLPLYFQWYIFYFVIQRKKWVDLAWMMTFYARIFLTYVPFLGLKGVLGLFFMVRF 76

Query: 588 LESNWFVWVTQMNHIPMHIDHDRNVDWFSMQVRATCNVHKSAFNDWFSGHLNFQIEHHLF 767
           LES WFVWVTQMNHIPMHID+DRN+DW S Q+RATCNVH+SAFNDWFSGHLNFQIEHHLF
Sbjct: 77  LESIWFVWVTQMNHIPMHIDYDRNMDWVSTQLRATCNVHRSAFNDWFSGHLNFQIEHHLF 136

Query: 768 PRMPRHNYHKVAPLVQSLCAKHGIEYQSKPLLSAFADIVH 887
           P MPRHNY+KVAPLVQSLCAKHGIEYQSKPLLSAFADI++
Sbjct: 137 PTMPRHNYYKVAPLVQSLCAKHGIEYQSKPLLSAFADIIY 176


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 58,285,863
Number of extensions: 1731997
Number of successful extensions: 5671
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 5657
Number of HSP's successfully gapped: 5
Length of query: 433
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 327
Effective length of database: 15,340,888
Effective search space: 5016470376
Effective search space used: 5016470376
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-003681
         (1300 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_037534.3| fatty acid desaturase 1 [Homo sapiens].              598   e-171
Alignment   gi|NP_004256.1| fatty acid desaturase 2 [Homo sapiens].              437   e-122
Alignment   gi|NP_068373.1| fatty acid desaturase 3 [Homo sapiens].              380   e-105

>ref|NP_037534.3| fatty acid desaturase 1 [Homo sapiens].
          Length = 501

 Score =  598 bits (1542), Expect = e-171
 Identities = 271/311 (87%), Positives = 285/311 (91%)
 Frame = +3

Query: 3    MHLLHILLLDVTAWLILWLFGTSFVPFVLCAVLLSTVQAQAGWLQHDLGHLSVFSTSTWN 182
            ++LLHILLLD  AWL LW+FGTSF+PF+LCAVLLS VQAQAGWLQHD GHLSVFSTS WN
Sbjct: 191  LYLLHILLLDGAAWLTLWVFGTSFLPFLLCAVLLSAVQAQAGWLQHDFGHLSVFSTSKWN 250

Query: 183  HLVHHFVIGHLKGAPASWWNHLHFQHHAKPNCFCKDPDINMHPFFFALGKILSVELGKQK 362
            HL+HHFVIGHLKGAPASWWNH+HFQHHAKPNCF KDPDINMHPFFFALGKILSVELGKQK
Sbjct: 251  HLLHHFVIGHLKGAPASWWNHMHFQHHAKPNCFRKDPDINMHPFFFALGKILSVELGKQK 310

Query: 363  KKYMPYDHQHKYFFLIGPPALLPAYFQWYIFYFVIKRKKWVDLAWMTSFYVRIFLTYVPX 542
            KKYMPY+HQHKYFFLIGPPALLP YFQWYIFYFVI+RKKWVDLAWM +FYVR FLTYVP 
Sbjct: 311  KKYMPYNHQHKYFFLIGPPALLPLYFQWYIFYFVIQRKKWVDLAWMITFYVRFFLTYVPL 370

Query: 543  XXXXXXXXXXXXVRFLESNWFVWVTQMNHIPMHIDHDRNVDWFSMQVRATCNVHKSAFND 722
                        VRFLESNWFVWVTQMNHIPMHIDHDRN+DW S Q++ATCNVHKSAFND
Sbjct: 371  LGLKAFLGLFFIVRFLESNWFVWVTQMNHIPMHIDHDRNMDWVSTQLQATCNVHKSAFND 430

Query: 723  WFSGHLNFQIEHHLFPRMPRHNYHKVAPLVQSLCAKHGIEYQSKPLLSAFADIVHSLKES 902
            WFSGHLNFQIEHHLFP MPRHNYHKVAPLVQSLCAKHGIEYQSKPLLSAFADI+HSLKES
Sbjct: 431  WFSGHLNFQIEHHLFPTMPRHNYHKVAPLVQSLCAKHGIEYQSKPLLSAFADIIHSLKES 490

Query: 903  GQLWLDAYLHQ 935
            GQLWLDAYLHQ
Sbjct: 491  GQLWLDAYLHQ 501


>ref|NP_004256.1| fatty acid desaturase 2 [Homo sapiens].
          Length = 444

 Score =  437 bits (1123), Expect = e-122
 Identities = 197/309 (63%), Positives = 234/309 (75%)
 Frame = +3

Query: 9    LLHILLLDVTAWLILWLFGTSFVPFVLCAVLLSTVQAQAGWLQHDLGHLSVFSTSTWNHL 188
            L HI+ L+  AW  ++ FG  ++P ++ A +L+T QAQAGWLQHD GHLSV+    WNHL
Sbjct: 137  LAHIIALESIAWFTVFYFGNGWIPTLITAFVLATSQAQAGWLQHDYGHLSVYRKPKWNHL 196

Query: 189  VHHFVIGHLKGAPASWWNHLHFQHHAKPNCFCKDPDINMHPFFFALGKILSVELGKQKKK 368
            VH FVIGHLKGA A+WWNH HFQHHAKPN F KDPD+NM    F LG+   +E GK+K K
Sbjct: 197  VHKFVIGHLKGASANWWNHRHFQHHAKPNIFHKDPDVNML-HVFVLGEWQPIEYGKKKLK 255

Query: 369  YMPYDHQHKYFFLIGPPALLPAYFQWYIFYFVIKRKKWVDLAWMTSFYVRIFLTYVPXXX 548
            Y+PY+HQH+YFFLIGPP L+P YFQ+ I   +I  K WVDLAW  S+Y+R F+TY+P   
Sbjct: 256  YLPYNHQHEYFFLIGPPLLIPMYFQYQIIMTMIVHKNWVDLAWAVSYYIRFFITYIPFYG 315

Query: 549  XXXXXXXXXXVRFLESNWFVWVTQMNHIPMHIDHDRNVDWFSMQVRATCNVHKSAFNDWF 728
                      +RFLES+WFVWVTQMNHI M ID +   DWFS Q+ ATCNV +S FNDWF
Sbjct: 316  ILGALLFLNFIRFLESHWFVWVTQMNHIVMEIDQEAYRDWFSSQLTATCNVEQSFFNDWF 375

Query: 729  SGHLNFQIEHHLFPRMPRHNYHKVAPLVQSLCAKHGIEYQSKPLLSAFADIVHSLKESGQ 908
            SGHLNFQIEHHLFP MPRHN HK+APLV+SLCAKHGIEYQ KPLL A  DI+ SLK+SG+
Sbjct: 376  SGHLNFQIEHHLFPTMPRHNLHKIAPLVKSLCAKHGIEYQEKPLLRALLDIIRSLKKSGK 435

Query: 909  LWLDAYLHQ 935
            LWLDAYLH+
Sbjct: 436  LWLDAYLHK 444


>ref|NP_068373.1| fatty acid desaturase 3 [Homo sapiens].
          Length = 445

 Score =  380 bits (977), Expect = e-105
 Identities = 176/307 (57%), Positives = 217/307 (70%)
 Frame = +3

Query: 15   HILLLDVTAWLILWLFGTSFVPFVLCAVLLSTVQAQAGWLQHDLGHLSVFSTSTWNHLVH 194
            HIL ++V AWL+++L G  +VP  L A +L+  QAQ+  LQHDLGH S+F  S WNH+  
Sbjct: 141  HILAMEVLAWLLIYLLGPGWVPSALAAFILAISQAQSWCLQHDLGHASIFKKSWWNHVAQ 200

Query: 195  HFVIGHLKGAPASWWNHLHFQHHAKPNCFCKDPDINMHPFFFALGKILSVELGKQKKKYM 374
             FV+G LKG  A WWN  HFQHHAKPN F KDPD+ + P F  LG+  SVE GK+K++Y+
Sbjct: 201  KFVMGQLKGFSAHWWNFRHFQHHAKPNIFHKDPDVTVAPVFL-LGES-SVEYGKKKRRYL 258

Query: 375  PYDHQHKYFFLIGPPALLPAYFQWYIFYFVIKRKKWVDLAWMTSFYVRIFLTYVPXXXXX 554
            PY+ QH YFFLIGPP L    F+     +++   +W DL W  SFY R FL+Y+P     
Sbjct: 259  PYNQQHLYFFLIGPPLLTLVNFEVENLAYMLVCMQWADLLWAASFYARFFLSYLPFYGVP 318

Query: 555  XXXXXXXXVRFLESNWFVWVTQMNHIPMHIDHDRNVDWFSMQVRATCNVHKSAFNDWFSG 734
                    VR LES+WFVW+TQMNHIP  I H+++ DW S Q+ ATCNV  S F +WFSG
Sbjct: 319  GVLLFFVAVRVLESHWFVWITQMNHIPKEIGHEKHRDWVSSQLAATCNVEPSLFTNWFSG 378

Query: 735  HLNFQIEHHLFPRMPRHNYHKVAPLVQSLCAKHGIEYQSKPLLSAFADIVHSLKESGQLW 914
            HLNFQIEHHLFPRMPRHNY +VAPLV+SLCAKHG+ Y+ KP L+A  DIV SLK+SG +W
Sbjct: 379  HLNFQIEHHLFPRMPRHNYSRVAPLVKSLCAKHGLSYEVKPFLTALVDIVRSLKKSGDIW 438

Query: 915  LDAYLHQ 935
            LDAYLHQ
Sbjct: 439  LDAYLHQ 445


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 57,182,150
Number of extensions: 1702203
Number of successful extensions: 5650
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 5635
Number of HSP's successfully gapped: 3
Length of query: 433
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 328
Effective length of database: 14,835,944
Effective search space: 4866189632
Effective search space used: 4866189632
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-003681
         (1300 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_666206.1| fatty acid desaturase 1 [Mus musculus].              582   e-166
Alignment   gi|NP_062673.1| fatty acid desaturase 2 [Mus musculus].              436   e-122
Alignment   gi|NP_001075133.1| fatty acid desaturase 2-like protein [Mus mu...   375   e-104
Alignment   gi|NP_068690.3| fatty acid desaturase 3 [Mus musculus].              375   e-104

>ref|NP_666206.1| fatty acid desaturase 1 [Mus musculus].
          Length = 447

 Score =  582 bits (1500), Expect = e-166
 Identities = 260/311 (83%), Positives = 283/311 (90%)
 Frame = +3

Query: 3    MHLLHILLLDVTAWLILWLFGTSFVPFVLCAVLLSTVQAQAGWLQHDLGHLSVFSTSTWN 182
            ++LLHILLLDV AWL LW+FGTS VPF+LCAVLLSTVQAQAGWLQHD GHLSVF TSTWN
Sbjct: 137  VYLLHILLLDVAAWLTLWIFGTSLVPFILCAVLLSTVQAQAGWLQHDFGHLSVFGTSTWN 196

Query: 183  HLVHHFVIGHLKGAPASWWNHLHFQHHAKPNCFCKDPDINMHPFFFALGKILSVELGKQK 362
            HL+HHFVIGHLKGAPASWWNH+HFQHHAKPNCF KDPDINMHP FFALGK+L VELG++K
Sbjct: 197  HLLHHFVIGHLKGAPASWWNHMHFQHHAKPNCFRKDPDINMHPLFFALGKVLPVELGREK 256

Query: 363  KKYMPYDHQHKYFFLIGPPALLPAYFQWYIFYFVIKRKKWVDLAWMTSFYVRIFLTYVPX 542
            KK+MPY+HQHKYFFLIGPPALLP YFQWYIFYFV++RKKWVDLAWM SFY RIF TY+P 
Sbjct: 257  KKHMPYNHQHKYFFLIGPPALLPLYFQWYIFYFVVQRKKWVDLAWMLSFYARIFFTYMPL 316

Query: 543  XXXXXXXXXXXXVRFLESNWFVWVTQMNHIPMHIDHDRNVDWFSMQVRATCNVHKSAFND 722
                        VRFLESNWFVWVTQMNHIPMHIDHDRNVDW S Q++ATCNVH+SAFN+
Sbjct: 317  LGLKGFLGLFFIVRFLESNWFVWVTQMNHIPMHIDHDRNVDWVSTQLQATCNVHQSAFNN 376

Query: 723  WFSGHLNFQIEHHLFPRMPRHNYHKVAPLVQSLCAKHGIEYQSKPLLSAFADIVHSLKES 902
            WFSGHLNFQIEHHLFP MPRHNYHKVAPLVQSLCAK+GI+Y+SKPLL+AFADIV+SLKES
Sbjct: 377  WFSGHLNFQIEHHLFPTMPRHNYHKVAPLVQSLCAKYGIKYESKPLLTAFADIVYSLKES 436

Query: 903  GQLWLDAYLHQ 935
            GQLWLDAYLHQ
Sbjct: 437  GQLWLDAYLHQ 447


>ref|NP_062673.1| fatty acid desaturase 2 [Mus musculus].
          Length = 444

 Score =  436 bits (1121), Expect = e-122
 Identities = 200/310 (64%), Positives = 238/310 (76%), Gaps = 1/310 (0%)
 Frame = +3

Query: 9    LLHILLLDVTAWLILWLFGTSFVPFVLCAVLLSTVQAQAGWLQHDLGHLSVFSTSTWNHL 188
            L HI++++  AW IL  FGT ++P ++ A +L+T QAQAGWLQHD GHLSV+  S WNH+
Sbjct: 137  LSHIIVMESLAWFILSYFGTGWIPTLVTAFVLATSQAQAGWLQHDYGHLSVYKKSIWNHV 196

Query: 189  VHHFVIGHLKGAPASWWNHLHFQHHAKPNCFCKDPDI-NMHPFFFALGKILSVELGKQKK 365
            VH FVIGHLKGA A+WWNH HFQHHAKPN F KDPDI ++H   F LG+   +E GK+K 
Sbjct: 197  VHKFVIGHLKGASANWWNHRHFQHHAKPNIFHKDPDIKSLH--VFVLGEWQPLEYGKKKL 254

Query: 366  KYMPYDHQHKYFFLIGPPALLPAYFQWYIFYFVIKRKKWVDLAWMTSFYVRIFLTYVPXX 545
            KY+PY+HQH+YFFLIGPP L+P YFQ+ I   +I R+ WVDLAW  S+Y+R F TY+P  
Sbjct: 255  KYLPYNHQHEYFFLIGPPLLIPMYFQYQIIMTMISRRDWVDLAWAISYYMRFFYTYIPFY 314

Query: 546  XXXXXXXXXXXVRFLESNWFVWVTQMNHIPMHIDHDRNVDWFSMQVRATCNVHKSAFNDW 725
                       +RFLES+WFVWVTQMNH+ M ID D   DWFS Q+ ATCNV +S FNDW
Sbjct: 315  GILGALVFLNFIRFLESHWFVWVTQMNHLVMEIDLDHYRDWFSSQLAATCNVEQSFFNDW 374

Query: 726  FSGHLNFQIEHHLFPRMPRHNYHKVAPLVQSLCAKHGIEYQSKPLLSAFADIVHSLKESG 905
            FSGHLNFQIEHHLFP MPRHN HK+APLV+SLCAKHGIEYQ KPLL A  DIV SLK+SG
Sbjct: 375  FSGHLNFQIEHHLFPTMPRHNLHKIAPLVKSLCAKHGIEYQEKPLLRALIDIVSSLKKSG 434

Query: 906  QLWLDAYLHQ 935
            +LWLDAYLH+
Sbjct: 435  ELWLDAYLHK 444


>ref|NP_001075133.1| fatty acid desaturase 2-like protein [Mus musculus].
          Length = 487

 Score =  375 bits (964), Expect = e-104
 Identities = 168/308 (54%), Positives = 222/308 (72%)
 Frame = +3

Query: 3    MHLLHILLLDVTAWLILWLFGTSFVPFVLCAVLLSTVQAQAGWLQHDLGHLSVFSTSTWN 182
            +HL  IL+L+++AWLIL  FG+S++  +L + LL+  QAQ  +LQHDLGHLS+F  S WN
Sbjct: 179  LHLAQILILEISAWLILHHFGSSWLVTILISFLLTVSQAQCSFLQHDLGHLSMFKKSKWN 238

Query: 183  HLVHHFVIGHLKGAPASWWNHLHFQHHAKPNCFCKDPDINMHPFFFALGKILSVELGKQK 362
            HL+H FV+ HLKG  A WWN+ HFQHH KPN + KDPDI++ P F  +G    ++ GK+K
Sbjct: 239  HLMHKFVMCHLKGLSADWWNYRHFQHHVKPNIYPKDPDIDVGPLFL-VGDTQPIKYGKKK 297

Query: 363  KKYMPYDHQHKYFFLIGPPALLPAYFQWYIFYFVIKRKKWVDLAWMTSFYVRIFLTYVPX 542
             KY+ Y+ QH YF+++  P L+P YF       +  RK W+D+AW++SFY+R F+T+ P 
Sbjct: 298  IKYIDYEKQHLYFYMVALPFLMPVYFNLQSMQVMYLRKYWMDIAWVSSFYIRYFITFGPF 357

Query: 543  XXXXXXXXXXXXVRFLESNWFVWVTQMNHIPMHIDHDRNVDWFSMQVRATCNVHKSAFND 722
                        V+F+ES W  +VTQM+HIPM +  + N DW S QV ATCN+ +S FND
Sbjct: 358  YGIFGTVLLIYLVKFIESPWIAYVTQMSHIPMKMSSEENHDWLSTQVVATCNIEQSFFND 417

Query: 723  WFSGHLNFQIEHHLFPRMPRHNYHKVAPLVQSLCAKHGIEYQSKPLLSAFADIVHSLKES 902
            WF+GHLNFQIEHHLFP MPRHNYHKVAPLV+SLCAKHG++Y +KP+L AF DIV SLK+S
Sbjct: 418  WFTGHLNFQIEHHLFPTMPRHNYHKVAPLVKSLCAKHGLQYINKPILKAFGDIVRSLKKS 477

Query: 903  GQLWLDAY 926
              LW++AY
Sbjct: 478  ASLWMNAY 485


>ref|NP_068690.3| fatty acid desaturase 3 [Mus musculus].
          Length = 449

 Score =  375 bits (964), Expect = e-104
 Identities = 173/307 (56%), Positives = 216/307 (70%)
 Frame = +3

Query: 15   HILLLDVTAWLILWLFGTSFVPFVLCAVLLSTVQAQAGWLQHDLGHLSVFSTSTWNHLVH 194
            HIL +++ AWLI++L G  +V  +L A++L+  QAQ   LQHDLGH S+F+ S WNH+  
Sbjct: 145  HILAMELLAWLIIYLLGPGWVSSILAALILAISQAQCWCLQHDLGHASIFTKSRWNHVAQ 204

Query: 195  HFVIGHLKGAPASWWNHLHFQHHAKPNCFCKDPDINMHPFFFALGKILSVELGKQKKKYM 374
             FV+G LKG  A WWN  HFQHHAKPN F KDPD+ + P F  LG+  SVE GK+K++Y+
Sbjct: 205  QFVMGQLKGFSAHWWNFRHFQHHAKPNIFHKDPDVTVAPVFL-LGES-SVEYGKKKRRYL 262

Query: 375  PYDHQHKYFFLIGPPALLPAYFQWYIFYFVIKRKKWVDLAWMTSFYVRIFLTYVPXXXXX 554
            PY+HQH YFFLIGPP L    F+     +++   +W DL W  SFY R FL+Y P     
Sbjct: 263  PYNHQHLYFFLIGPPLLTLVNFEVENLAYMLVCMQWTDLLWAASFYSRFFLSYSPFYGAT 322

Query: 555  XXXXXXXXVRFLESNWFVWVTQMNHIPMHIDHDRNVDWFSMQVRATCNVHKSAFNDWFSG 734
                    VR LES+WFVW+TQMNHIP  I H+++ DW S Q+ ATCNV  S F DWFSG
Sbjct: 323  GTLLLFVAVRVLESHWFVWITQMNHIPKEIGHEKHRDWASSQLAATCNVEPSLFIDWFSG 382

Query: 735  HLNFQIEHHLFPRMPRHNYHKVAPLVQSLCAKHGIEYQSKPLLSAFADIVHSLKESGQLW 914
            HLNFQIEHHLFP MPRHNY +VAPLV++ CAKHG+ Y+ KP L+A  DI+ SLK+SG +W
Sbjct: 383  HLNFQIEHHLFPTMPRHNYRRVAPLVKAFCAKHGLHYEVKPFLTALVDIIGSLKKSGDIW 442

Query: 915  LDAYLHQ 935
            LDAYLHQ
Sbjct: 443  LDAYLHQ 449


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 48,411,676
Number of extensions: 1424167
Number of successful extensions: 4579
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 4567
Number of HSP's successfully gapped: 4
Length of query: 433
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 329
Effective length of database: 12,493,815
Effective search space: 4110465135
Effective search space used: 4110465135
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-003681
         (1300 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_003122678.1| PREDICTED: fatty acid desaturase 1-like [Sus...   644   0.0  
Alignment   gi|NP_001106512.1| fatty acid desaturase 1 [Sus scrofa].             639   0.0  
Alignment   gi|NP_001165221.1| fatty acid desaturase 2 [Sus scrofa].             438   e-123
Alignment   gi|NP_001193363.1| fatty acid desaturase 3 [Sus scrofa].             381   e-106

>ref|XP_003122678.1| PREDICTED: fatty acid desaturase 1-like [Sus scrofa].
          Length = 386

 Score =  644 bits (1661), Expect = 0.0
 Identities = 297/311 (95%), Positives = 298/311 (95%)
 Frame = +3

Query: 3    MHLLHILLLDVTAWLILWLFGTSFVPFVLCAVLLSTVQAQAGWLQHDLGHLSVFSTSTWN 182
            MHLLHILLLDVTAWLILWLFGTSFVPFVLCAVLLSTVQAQAGWLQHDLGHLSVFSTSTWN
Sbjct: 76   MHLLHILLLDVTAWLILWLFGTSFVPFVLCAVLLSTVQAQAGWLQHDLGHLSVFSTSTWN 135

Query: 183  HLVHHFVIGHLKGAPASWWNHLHFQHHAKPNCFCKDPDINMHPFFFALGKILSVELGKQK 362
            HLVHHFVIGHLKGAPASWWNHLHFQHHAKPNCFCKDPDINMHPFFFALGKILSVELGKQK
Sbjct: 136  HLVHHFVIGHLKGAPASWWNHLHFQHHAKPNCFCKDPDINMHPFFFALGKILSVELGKQK 195

Query: 363  KKYMPYDHQHKYFFLIGPPALLPAYFQWYIFYFVIKRKKWVDLAWMTSFYVRIFLTYVPX 542
            KKYMPY+HQHKYFFLIGPPALLPAYFQWYIFYFVIKRKKWVDLAWMTSFYVRIFLTYVP 
Sbjct: 196  KKYMPYNHQHKYFFLIGPPALLPAYFQWYIFYFVIKRKKWVDLAWMTSFYVRIFLTYVPL 255

Query: 543  XXXXXXXXXXXXVRFLESNWFVWVTQMNHIPMHIDHDRNVDWFSMQVRATCNVHKSAFND 722
                        VRFLESNWFVWVTQMNHIPMHIDHDRNVDWFSMQVRATCNVHKSAFND
Sbjct: 256  LGLKGSLGLLFLVRFLESNWFVWVTQMNHIPMHIDHDRNVDWFSMQVRATCNVHKSAFND 315

Query: 723  WFSGHLNFQIEHHLFPRMPRHNYHKVAPLVQSLCAKHGIEYQSKPLLSAFADIVHSLKES 902
            WFSGHLNFQIEHHLFPRMPRHNYHKVAPLVQSLCAKHGIEYQSKPLLSAFADIVHSLKES
Sbjct: 316  WFSGHLNFQIEHHLFPRMPRHNYHKVAPLVQSLCAKHGIEYQSKPLLSAFADIVHSLKES 375

Query: 903  GQLWLDAYLHQ 935
            GQLWLDAYLHQ
Sbjct: 376  GQLWLDAYLHQ 386


>ref|NP_001106512.1| fatty acid desaturase 1 [Sus scrofa].
          Length = 445

 Score =  639 bits (1648), Expect = 0.0
 Identities = 295/311 (94%), Positives = 296/311 (95%)
 Frame = +3

Query: 3    MHLLHILLLDVTAWLILWLFGTSFVPFVLCAVLLSTVQAQAGWLQHDLGHLSVFSTSTWN 182
            MHLLHILLLDVTAWLILWLFGTSFVPFVLCAVLLSTVQAQAGWLQHDLGHLSVFSTSTWN
Sbjct: 135  MHLLHILLLDVTAWLILWLFGTSFVPFVLCAVLLSTVQAQAGWLQHDLGHLSVFSTSTWN 194

Query: 183  HLVHHFVIGHLKGAPASWWNHLHFQHHAKPNCFCKDPDINMHPFFFALGKILSVELGKQK 362
            HLVHHFVIGHLKGAPASWWNHLHFQHHAKPNCFCKDPDINMHPFFFALGKILSVELGKQK
Sbjct: 195  HLVHHFVIGHLKGAPASWWNHLHFQHHAKPNCFCKDPDINMHPFFFALGKILSVELGKQK 254

Query: 363  KKYMPYDHQHKYFFLIGPPALLPAYFQWYIFYFVIKRKKWVDLAWMTSFYVRIFLTYVPX 542
            KKYMPY+HQHKYFFLIGPPALLPAYFQWYIFYFVIKRKKWVDLAWMTSFYVRIFLTYVP 
Sbjct: 255  KKYMPYNHQHKYFFLIGPPALLPAYFQWYIFYFVIKRKKWVDLAWMTSFYVRIFLTYVPL 314

Query: 543  XXXXXXXXXXXXVRFLESNWFVWVTQMNHIPMHIDHDRNVDWFSMQVRATCNVHKSAFND 722
                         RFLESNWFVWVTQMNHIPMHIDHDRNV WFSMQVRATCNVHKSAFND
Sbjct: 315  LGLKGSLGLLFLARFLESNWFVWVTQMNHIPMHIDHDRNVVWFSMQVRATCNVHKSAFND 374

Query: 723  WFSGHLNFQIEHHLFPRMPRHNYHKVAPLVQSLCAKHGIEYQSKPLLSAFADIVHSLKES 902
            WFSGHLNFQIEHHLFPRMPRHNYHKVAPLVQSLCAKHGIEYQSKPLLSAFADIVHSLKES
Sbjct: 375  WFSGHLNFQIEHHLFPRMPRHNYHKVAPLVQSLCAKHGIEYQSKPLLSAFADIVHSLKES 434

Query: 903  GQLWLDAYLHQ 935
            GQLWLDAYLHQ
Sbjct: 435  GQLWLDAYLHQ 445


>ref|NP_001165221.1| fatty acid desaturase 2 [Sus scrofa].
          Length = 444

 Score =  438 bits (1127), Expect = e-123
 Identities = 197/309 (63%), Positives = 236/309 (76%)
 Frame = +3

Query: 9    LLHILLLDVTAWLILWLFGTSFVPFVLCAVLLSTVQAQAGWLQHDLGHLSVFSTSTWNHL 188
            L HI+++++ AW  +  FG  ++P ++ A +L+T QAQAGWLQHD GHLSV+  STWNH+
Sbjct: 137  LAHIIVMEIIAWFTISYFGNGWIPTLMTAFILATSQAQAGWLQHDYGHLSVYKKSTWNHI 196

Query: 189  VHHFVIGHLKGAPASWWNHLHFQHHAKPNCFCKDPDINMHPFFFALGKILSVELGKQKKK 368
            VH F+IGHLKGA A+WWNH HFQHHAKPN F KDPD+NM    F LG+   VE GK+K K
Sbjct: 197  VHKFIIGHLKGASANWWNHRHFQHHAKPNIFSKDPDVNML-HVFVLGERQPVEYGKKKLK 255

Query: 369  YMPYDHQHKYFFLIGPPALLPAYFQWYIFYFVIKRKKWVDLAWMTSFYVRIFLTYVPXXX 548
            Y+PY+HQH+YFFLIGPP L+P YFQ+ I   +I RK WVDLAW  S+Y R F+T+ P   
Sbjct: 256  YLPYNHQHEYFFLIGPPVLIPLYFQYQIIMTMIVRKDWVDLAWAFSYYARFFITFSPFYG 315

Query: 549  XXXXXXXXXXVRFLESNWFVWVTQMNHIPMHIDHDRNVDWFSMQVRATCNVHKSAFNDWF 728
                      +RFLES+WFVWVTQMNHI M ID +   DWFS Q+ ATCNV +S FNDWF
Sbjct: 316  VLGAILFLNFIRFLESHWFVWVTQMNHIVMEIDREPYRDWFSTQLAATCNVEQSFFNDWF 375

Query: 729  SGHLNFQIEHHLFPRMPRHNYHKVAPLVQSLCAKHGIEYQSKPLLSAFADIVHSLKESGQ 908
            SGHLNFQIEHHLFP MPRHN HK+APLV+SLCAKHGIEYQ KPLL A  DI+ SL++SGQ
Sbjct: 376  SGHLNFQIEHHLFPTMPRHNLHKIAPLVKSLCAKHGIEYQEKPLLRALMDIIGSLRKSGQ 435

Query: 909  LWLDAYLHQ 935
            LWLDAYLH+
Sbjct: 436  LWLDAYLHK 444


>ref|NP_001193363.1| fatty acid desaturase 3 [Sus scrofa].
          Length = 443

 Score =  381 bits (979), Expect = e-106
 Identities = 174/307 (56%), Positives = 219/307 (71%)
 Frame = +3

Query: 15   HILLLDVTAWLILWLFGTSFVPFVLCAVLLSTVQAQAGWLQHDLGHLSVFSTSTWNHLVH 194
            HIL ++V AWLI++L G  +VP  L A +L+  QAQ+  LQHDLGH+S+F  S WNHL  
Sbjct: 139  HILAMEVLAWLIIYLLGPGWVPSTLAAFILAISQAQSWCLQHDLGHISIFRKSWWNHLAQ 198

Query: 195  HFVIGHLKGAPASWWNHLHFQHHAKPNCFCKDPDINMHPFFFALGKILSVELGKQKKKYM 374
             FV+G LKG  A WWN  HFQHHAKPN F KDPD+ + P F  LG+  S+E G++K++Y+
Sbjct: 199  QFVMGQLKGFSAHWWNFRHFQHHAKPNIFHKDPDVTVAPVFL-LGES-SIEYGQKKRRYL 256

Query: 375  PYDHQHKYFFLIGPPALLPAYFQWYIFYFVIKRKKWVDLAWMTSFYVRIFLTYVPXXXXX 554
            PY+HQH YFFLIGPP L    F+     +++   +W DL W  SFY+R FL+Y+P     
Sbjct: 257  PYNHQHLYFFLIGPPLLTLVNFEVENLAYMLVCLQWTDLLWAASFYIRFFLSYIPLYGVP 316

Query: 555  XXXXXXXXVRFLESNWFVWVTQMNHIPMHIDHDRNVDWFSMQVRATCNVHKSAFNDWFSG 734
                    VR LES+WFVW+TQMNHIP  I H+++ DW S Q+ ATCNV  S F DWFSG
Sbjct: 317  GALLLFVAVRVLESHWFVWITQMNHIPKEIGHEKHRDWASSQLAATCNVEPSLFIDWFSG 376

Query: 735  HLNFQIEHHLFPRMPRHNYHKVAPLVQSLCAKHGIEYQSKPLLSAFADIVHSLKESGQLW 914
            HLNFQIEHHLFP MPRHNY +VAPLV++LCAKHG+ Y+ KP L+A  DI+ SLK+SG +W
Sbjct: 377  HLNFQIEHHLFPTMPRHNYRRVAPLVKALCAKHGLSYEVKPFLTALVDIIRSLKKSGNVW 436

Query: 915  LDAYLHQ 935
            L+AYLHQ
Sbjct: 437  LEAYLHQ 443


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 36,156,110
Number of extensions: 1089391
Number of successful extensions: 3569
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 3556
Number of HSP's successfully gapped: 4
Length of query: 433
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 331
Effective length of database: 8,804,438
Effective search space: 2914268978
Effective search space used: 2914268978
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-003681
         (1300 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr02                                                         678   0.0  

>Sscrofa_Chr02 
||          Length = 162569375

 Score =  678 bits (342), Expect = 0.0
 Identities = 397/414 (95%), Gaps = 1/414 (0%)
 Strand = Plus / Minus

                                                                           
Query: 887     ctcactgaaggagtccgggcaactctggctggatgcctatcttcaccagtaacagcagcc 946
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9250900 ctcactgaaggagtccgggcaactctggctggatgcctatcttcaccagtaacagcagcc 9250841

                                                                           
Query: 947     tcccatctggaagaagagccttggagccaaaacagagtggggcttggggacaatgccact 1006
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9250840 tcccatctggaagaagagccttggagccaaaacagagtggggcttggggacaatgccact 9250781

                                                                           
Query: 1007    accatcctagtattcagaggggatgggtttgagatgaaggctgtgactcaaacccctccc 1066
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9250780 accatcctagtattcagaggggatgggtttgagatgaaggctgtgactcaaacccctccc 9250721

                                                                           
Query: 1067    ctttatcttccaggcagggatctaagacccaaacaggggtggggaaaacaggcaggcgcc 1126
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9250720 ctttatcttccaggcagggatctaagacccaaacaggggtggggaaaacaggcaggcgcc 9250661

                                                                           
Query: 1127    ccccggaaggagggatggagctgccgggcagaggtatgagtggtctccttttccgctgga 1186
               |||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| 
Sbjct: 9250660 ccccagaaggagggatggagctgccgggcagaggtgtgagtggtctccttttccgctggg 9250601

                                                                           
Query: 1187    gagatgctaatggtctggtctgtgagcaaagaacgattcccgagggtgttagaattaggg 1246
                ||||||  |||||||||||||||||||||||| || ||  ||||||||||||| |||||
Sbjct: 9250600 cagatgcagatggtctggtctgtgagcaaagaaggagtcaggagggtgttagaa-taggg 9250542

                                                                     
Query: 1247    agggttcactgatcccaaaaatcaccaaaatgagggttgttttccttttggctg 1300
               ||||| |||||| |||| |||||| ||| |||| ||||||||||||||||||||
Sbjct: 9250541 agggtccactgagcccagaaatcagcaagatgatggttgttttccttttggctg 9250488



 Score =  260 bits (131), Expect = 2e-66
 Identities = 131/131 (100%)
 Strand = Plus / Minus

                                                                           
Query: 217     agggggcccctgccagttggtggaaccacctgcacttccagcaccatgccaagcccaact 276
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9258610 agggggcccctgccagttggtggaaccacctgcacttccagcaccatgccaagcccaact 9258551

                                                                           
Query: 277     gcttctgcaaagacccagacatcaacatgcaccccttcttctttgccttggggaaaatcc 336
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9258550 gcttctgcaaagacccagacatcaacatgcaccccttcttctttgccttggggaaaatcc 9258491

                          
Query: 337     tctctgtggag 347
               |||||||||||
Sbjct: 9258490 tctctgtggag 9258480



 Score =  250 bits (126), Expect = 2e-63
 Identities = 126/126 (100%)
 Strand = Plus / Minus

                                                                           
Query: 761     tcttttccccaggatgccgcgacacaactaccacaaagtggctcccctggtgcagtccct 820
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9251359 tcttttccccaggatgccgcgacacaactaccacaaagtggctcccctggtgcagtccct 9251300

                                                                           
Query: 821     gtgtgccaagcatggtatagagtaccagtccaagcccctgctctcggccttcgccgacat 880
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9251299 gtgtgccaagcatggtatagagtaccagtccaagcccctgctctcggccttcgccgacat 9251240

                     
Query: 881     tgtgca 886
               ||||||
Sbjct: 9251239 tgtgca 9251234



 Score =  232 bits (117), Expect = 4e-58
 Identities = 117/117 (100%)
 Strand = Plus / Minus

                                                                           
Query: 1       taatgcacctgctgcacatcctgctgctggacgtcactgcctggctcattctttggctct 60
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9259756 taatgcacctgctgcacatcctgctgctggacgtcactgcctggctcattctttggctct 9259697

                                                                        
Query: 61      tcgggacgtcctttgtgcccttcgtcctctgtgcggtgctgctcagcacagttcagg 117
               |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9259696 tcgggacgtcctttgtgcccttcgtcctctgtgcggtgctgctcagcacagttcagg 9259640



 Score =  210 bits (106), Expect = 1e-51
 Identities = 106/106 (100%)
 Strand = Plus / Minus

                                                                           
Query: 114     caggcccaggctggctggctgcagcatgacttgggacacctgtccgtcttcagcacctct 173
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9258812 caggcccaggctggctggctgcagcatgacttgggacacctgtccgtcttcagcacctct 9258753

                                                             
Query: 174     acgtggaaccacctggtacatcattttgtgattggccacctgaagg 219
               ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9258752 acgtggaaccacctggtacatcattttgtgattggccacctgaagg 9258707



 Score =  202 bits (102), Expect = 3e-49
 Identities = 102/102 (100%)
 Strand = Plus / Minus

                                                                           
Query: 581     caggttcctagaaagcaactggttcgtgtgggtgacacagatgaaccacatccccatgca 640
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9251873 caggttcctagaaagcaactggttcgtgtgggtgacacagatgaaccacatccccatgca 9251814

                                                         
Query: 641     catcgatcacgaccggaacgtggactggttctccatgcaggt 682
               ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9251813 catcgatcacgaccggaacgtggactggttctccatgcaggt 9251772



 Score =  200 bits (101), Expect = 1e-48
 Identities = 101/101 (100%)
 Strand = Plus / Minus

                                                                           
Query: 485     ggacttggcctggatgacgtccttctatgtgcgcatcttcctcacttatgtgccactgtt 544
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9252184 ggacttggcctggatgacgtccttctatgtgcgcatcttcctcacttatgtgccactgtt 9252125

                                                        
Query: 545     ggggctgaagggctccctgggcctcctcttcctggtcaggt 585
               |||||||||||||||||||||||||||||||||||||||||
Sbjct: 9252124 ggggctgaagggctccctgggcctcctcttcctggtcaggt 9252084



 Score =  165 bits (83), Expect = 8e-38
 Identities = 83/83 (100%)
 Strand = Plus / Minus

                                                                           
Query: 678     caggtccgggcaacgtgcaacgtccacaagtcggccttcaatgattggttcagtggccac 737
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9251552 caggtccgggcaacgtgcaacgtccacaagtcggccttcaatgattggttcagtggccac 9251493

                                      
Query: 738     ctcaacttccagattgagcacca 760
               |||||||||||||||||||||||
Sbjct: 9251492 ctcaacttccagattgagcacca 9251470



 Score =  155 bits (78), Expect = 7e-35
 Identities = 78/78 (100%)
 Strand = Plus / Minus

                                                                           
Query: 409     ttgggcccccagccttgctgcctgcctacttccagtggtatattttctattttgttatca 468
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9252960 ttgggcccccagccttgctgcctgcctacttccagtggtatattttctattttgttatca 9252901

                                 
Query: 469     agaggaagaagtgggtgg 486
               ||||||||||||||||||
Sbjct: 9252900 agaggaagaagtgggtgg 9252883



 Score =  117 bits (59), Expect = 2e-23
 Identities = 62/63 (98%)
 Strand = Plus / Minus

                                                                           
Query: 346     agcttgggaaacagaagaaaaagtacatgccatacgaccaccagcacaaatacttcttct 405
               ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 9254696 agcttgggaaacagaagaaaaagtacatgccatacaaccaccagcacaaatacttcttct 9254637

                  
Query: 406     tga 408
               |||
Sbjct: 9254636 tga 9254634



 Score = 69.9 bits (35), Expect = 3e-09
 Identities = 44/47 (93%)
 Strand = Plus / Plus

                                                              
Query: 714     ttcaatgattggttcagtggccacctcaacttccagattgagcacca 760
               |||||||| |||||||| || ||||||||||||||||||||||||||
Sbjct: 9151141 ttcaatgactggttcagcgggcacctcaacttccagattgagcacca 9151187



 Score = 63.9 bits (32), Expect = 2e-07
 Identities = 50/56 (89%)
 Strand = Plus / Minus

                                                                       
Query: 581     caggttcctagaaagcaactggttcgtgtgggtgacacagatgaaccacatcccca 636
               |||| |||| || ||| |||||||||||||| | ||||||||||||||||||||||
Sbjct: 9161265 cagggtcctggagagccactggttcgtgtggatcacacagatgaaccacatcccca 9161210



 Score = 61.9 bits (31), Expect = 8e-07
 Identities = 46/51 (90%)
 Strand = Plus / Plus

                                                                  
Query: 581     caggttcctagaaagcaactggttcgtgtgggtgacacagatgaaccacat 631
               ||||||||| || ||| ||||||| |||||||| |||||||||||||||||
Sbjct: 9150672 caggttcctggagagccactggtttgtgtgggtcacacagatgaaccacat 9150722



 Score = 60.0 bits (30), Expect = 3e-06
 Identities = 39/42 (92%)
 Strand = Plus / Plus

                                                         
Query: 807     ctggtgcagtccctgtgtgccaagcatggtatagagtaccag 848
               |||||| |||||||||||||||||||||| || |||||||||
Sbjct: 9151681 ctggtgaagtccctgtgtgccaagcatggcattgagtaccag 9151722


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 39,394,455
Number of extensions: 245
Number of successful extensions: 245
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 244
Number of HSP's successfully gapped: 14
Length of query: 1300
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1279
Effective length of database: 2,808,413,156
Effective search space: 3591960426524
Effective search space used: 3591960426524
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)