Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003771
(1076 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002688604.1| PREDICTED: peptidoglycan recognition protein... 431 e-121
Alignment gi|XP_588006.3| PREDICTED: peptidoglycan recognition protein L-... 431 e-121
>ref|XP_002688604.1| PREDICTED: peptidoglycan recognition protein L-like [Bos taurus].
Length = 591
Score = 431 bits (1109), Expect = e-121
Identities = 227/326 (69%), Positives = 248/326 (76%)
Frame = +3
Query: 99 MSPGNWKTTMVVRXXXXXXXXXXXQPEPGTATLPLLMDSVIQALAELEQKSPATEAGHIA 278
MS GNWK T+VV+ QPEPGTATLPLLMDSVIQALAELEQK+PATEAGH A
Sbjct: 1 MSFGNWKPTVVVQGILWILYGLLLQPEPGTATLPLLMDSVIQALAELEQKAPATEAGHSA 60
Query: 279 SMWLLSAQGSGAHNPLPRFLLEGQSLKTAKLAPPSLSPEFQGLIEEVARHGVQDGKEYGV 458
+ WLL+AQGSG H+PL FLLEG+SL T +L PPSLSPE +GL+ EVARH VQDGKEYGV
Sbjct: 61 AAWLLTAQGSGTHSPLYHFLLEGKSLNTTELDPPSLSPELRGLMGEVARHSVQDGKEYGV 120
Query: 459 VLAPDGSTVAVEPLLAGLEAGLQGHRVVNLPLDSTATFPDIGATVPDLKATSSAHKDTSA 638
VLAPDGSTVAVEPLLAGL AGLQGHR+VNL L+STAT PD G T PDL TS D S
Sbjct: 121 VLAPDGSTVAVEPLLAGLWAGLQGHRIVNLSLESTATPPDAGVTFPDLGPTSPGLSDASP 180
Query: 639 DVNSADVGTLSPNVRDTDVDAEVTFLDVRPSSTGVQVTSPDVQASSPDTKAKSPTTVDSL 818
DV S DV +SPNV D D T +VRP SPDVQASSPDTKAK PT VDSL
Sbjct: 181 DVTSGDVRAVSPNVSTKDTDVRATSPEVRPG-------SPDVQASSPDTKAKLPTAVDSL 233
Query: 819 LMVTLARDLGLHFLQGAQTESNSGLGTEGCWDQLSLPRTFTLLDPEASPLNMAFLNXXXX 998
L+VTLAR LGL+FLQG QT ++SGLGTEGCWDQLS+PRTFTLLDPEASPL AFLN
Sbjct: 234 LVVTLARGLGLNFLQGPQTWNHSGLGTEGCWDQLSVPRTFTLLDPEASPLTTAFLNGALD 293
Query: 999 XXXXXXYLSKVPDPRPPLSHLLNQYY 1076
YLS+ P PRPPLSHLL+QYY
Sbjct: 294 GALLGDYLSRTPAPRPPLSHLLSQYY 319
>ref|XP_588006.3| PREDICTED: peptidoglycan recognition protein L-like [Bos taurus].
Length = 591
Score = 431 bits (1109), Expect = e-121
Identities = 227/326 (69%), Positives = 248/326 (76%)
Frame = +3
Query: 99 MSPGNWKTTMVVRXXXXXXXXXXXQPEPGTATLPLLMDSVIQALAELEQKSPATEAGHIA 278
MS GNWK T+VV+ QPEPGTATLPLLMDSVIQALAELEQK+PATEAGH A
Sbjct: 1 MSFGNWKPTVVVQGILWILYGLLLQPEPGTATLPLLMDSVIQALAELEQKAPATEAGHSA 60
Query: 279 SMWLLSAQGSGAHNPLPRFLLEGQSLKTAKLAPPSLSPEFQGLIEEVARHGVQDGKEYGV 458
+ WLL+AQGSG H+PL FLLEG+SL T +L PPSLSPE +GL+ EVARH VQDGKEYGV
Sbjct: 61 AAWLLTAQGSGTHSPLYHFLLEGKSLNTTELDPPSLSPELRGLMGEVARHSVQDGKEYGV 120
Query: 459 VLAPDGSTVAVEPLLAGLEAGLQGHRVVNLPLDSTATFPDIGATVPDLKATSSAHKDTSA 638
VLAPDGSTVAVEPLLAGL AGLQGHR+VNL L+STAT PD G T PDL TS D S
Sbjct: 121 VLAPDGSTVAVEPLLAGLWAGLQGHRIVNLSLESTATPPDAGVTFPDLGPTSPGLSDASP 180
Query: 639 DVNSADVGTLSPNVRDTDVDAEVTFLDVRPSSTGVQVTSPDVQASSPDTKAKSPTTVDSL 818
DV S DV +SPNV D D T +VRP SPDVQASSPDTKAK PT VDSL
Sbjct: 181 DVTSGDVRAVSPNVSTKDTDVRATSPEVRPG-------SPDVQASSPDTKAKLPTAVDSL 233
Query: 819 LMVTLARDLGLHFLQGAQTESNSGLGTEGCWDQLSLPRTFTLLDPEASPLNMAFLNXXXX 998
L+VTLAR LGL+FLQG QT ++SGLGTEGCWDQLS+PRTFTLLDPEASPL AFLN
Sbjct: 234 LVVTLARGLGLNFLQGPQTWNHSGLGTEGCWDQLSVPRTFTLLDPEASPLTTAFLNGALD 293
Query: 999 XXXXXXYLSKVPDPRPPLSHLLNQYY 1076
YLS+ P PRPPLSHLL+QYY
Sbjct: 294 GALLGDYLSRTPAPRPPLSHLLSQYY 319
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 43,545,668
Number of extensions: 1270751
Number of successful extensions: 5946
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5780
Number of HSP's successfully gapped: 2
Length of query: 358
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 255
Effective length of database: 14,273,310
Effective search space: 3639694050
Effective search space used: 3639694050
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003771
(1076 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_852999.1| PREDICTED: similar to N-acetylmuramoyl-L-alanin... 139 4e-33
>ref|XP_852999.1| PREDICTED: similar to N-acetylmuramoyl-L-alanine amidase precursor
(Peptidoglycan recognition protein long) (PGRP-L)
(Peptidoglycan recognition protein 2) [Canis familiaris].
Length = 429
Score = 139 bits (351), Expect = 4e-33
Identities = 68/97 (70%), Positives = 77/97 (79%)
Frame = +3
Query: 786 KAKSPTTVDSLLMVTLARDLGLHFLQGAQTESNSGLGTEGCWDQLSLPRTFTLLDPEASP 965
KA+SPTTVDSLL+VTLARDLGL FLQG QT S++GLGTEGCWDQLS PRTFTLL SP
Sbjct: 58 KARSPTTVDSLLVVTLARDLGLSFLQGPQTWSHAGLGTEGCWDQLSAPRTFTLLHSGTSP 117
Query: 966 LNMAFLNXXXXXXXXXXYLSKVPDPRPPLSHLLNQYY 1076
+ MAFLN YLS+ P+PRPPLSHLL++YY
Sbjct: 118 VTMAFLNGALDGVLLGDYLSRTPEPRPPLSHLLSEYY 154
Score = 60.5 bits (145), Expect = 3e-09
Identities = 29/33 (87%), Positives = 31/33 (93%)
Frame = +3
Query: 177 EPGTATLPLLMDSVIQALAELEQKSPATEAGHI 275
EPGTATLPLLMDSVIQALAELEQK PAT+A H+
Sbjct: 18 EPGTATLPLLMDSVIQALAELEQKVPATKASHV 50
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 45,313,366
Number of extensions: 1300582
Number of successful extensions: 6453
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6187
Number of HSP's successfully gapped: 2
Length of query: 358
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 254
Effective length of database: 15,407,560
Effective search space: 3913520240
Effective search space used: 3913520240
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003771
(1076 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_443122.3| N-acetylmuramoyl-L-alanine amidase precursor [H... 334 9e-92
>ref|NP_443122.3| N-acetylmuramoyl-L-alanine amidase precursor [Homo sapiens].
Length = 576
Score = 334 bits (856), Expect = 9e-92
Identities = 188/309 (60%), Positives = 214/309 (69%), Gaps = 9/309 (2%)
Frame = +3
Query: 177 EPGTATLPLLMDSVIQALAELEQKSPATEAGHIASMWLLSAQGSGAHNPLPRFLLEGQSL 356
+PGTA+LPLLMDSVIQALAELEQK PA + H AS WL+SA SG HN L FLL SL
Sbjct: 17 DPGTASLPLLMDSVIQALAELEQKVPAAKTRHTASAWLMSAPNSGPHNRLYHFLLGAWSL 76
Query: 357 KTAKLAPPSLSPEFQGLIEEVARHGVQDGKEYGVVLAPDGSTVAVEPLLAGLEAGLQGHR 536
+L P LSPE GL +EVARH V++GKEYGVVLAPDGSTVAVEPLLAGLEAGLQG R
Sbjct: 77 NATELDPCPLSPELLGLTKEVARHDVREGKEYGVVLAPDGSTVAVEPLLAGLEAGLQGRR 136
Query: 537 VVNLPLDSTA-------TFPDIGATVPDLKATSS-AHKDTSADVNSADVGTLSPNVRDTD 692
V+NLPLDS A TFPD+ A PD++ATSS +D S DV +AD+G +P+
Sbjct: 137 VINLPLDSMAAPWETGDTFPDVVAIAPDVRATSSPGLRDGSPDVTTADIGANTPDATK-- 194
Query: 693 VDAEVTFLDVRPSSTGVQVTSPDVQASSPDTKAKS-PTTVDSLLMVTLARDLGLHFLQGA 869
PDVQAS PD KAKS PT VDSLL VTLA +LGL FL+G+
Sbjct: 195 -------------------GCPDVQASLPDAKAKSPPTMVDSLLAVTLAGNLGLTFLRGS 235
Query: 870 QTESNSGLGTEGCWDQLSLPRTFTLLDPEASPLNMAFLNXXXXXXXXXXYLSKVPDPRPP 1049
QT+S+ LGTEGCWDQLS PRTFTLLDP+AS L MAFLN YLS+ P+PRP
Sbjct: 236 QTQSHPDLGTEGCWDQLSAPRTFTLLDPKASLLTMAFLNGALDGVILGDYLSRTPEPRPS 295
Query: 1050 LSHLLNQYY 1076
LSHLL+QYY
Sbjct: 296 LSHLLSQYY 304
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 44,591,283
Number of extensions: 1282448
Number of successful extensions: 5765
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5681
Number of HSP's successfully gapped: 1
Length of query: 358
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 254
Effective length of database: 14,868,908
Effective search space: 3776702632
Effective search space used: 3776702632
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003771
(1076 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_067294.2| N-acetylmuramoyl-L-alanine amidase precursor [M... 284 1e-76
>ref|NP_067294.2| N-acetylmuramoyl-L-alanine amidase precursor [Mus musculus].
Length = 530
Score = 284 bits (726), Expect = 1e-76
Identities = 164/303 (54%), Positives = 193/303 (63%), Gaps = 2/303 (0%)
Frame = +3
Query: 174 PEPGTAT-LPLLMDSVIQALAELEQKSPATEAGHIASMWLLSAQGSGAHNPL-PRFLLEG 347
PEPG A+ LPLLMDS+IQALAELEQK P TEA AS W+LSA+ S HN L R LL+
Sbjct: 17 PEPGAASSLPLLMDSIIQALAELEQKVPVTEASITASAWILSAKNSSTHNSLHQRLLLKA 76
Query: 348 QSLKTAKLAPPSLSPEFQGLIEEVARHGVQDGKEYGVVLAPDGSTVAVEPLLAGLEAGLQ 527
S T + P SLSPE Q LI EVA+H VQ+G+EYGVVLAPDGSTVAV+PLL GLEAGLQ
Sbjct: 77 PSHNTTEPDPHSLSPELQALISEVAQHDVQNGREYGVVLAPDGSTVAVKPLLFGLEAGLQ 136
Query: 528 GHRVVNLPLDSTATFPDIGATVPDLKATSSAHKDTSADVNSADVGTLSPNVRDTDVDAEV 707
H V NLP D A D G T+ +++AT
Sbjct: 137 AHSVANLPSDCLAIPCDTGDTLANIRATWPG----------------------------- 167
Query: 708 TFLDVRPSSTGVQVTSPDVQASSPDTKAKSPTTVDSLLMVTLARDLGLHFLQGAQTESNS 887
+D P+++ SPDV A+ P+ KAK+PTTVD LL +TLA DLGL FL +QT S
Sbjct: 168 -LMDAFPNAS-----SPDVGATLPNDKAKTPTTVDRLLAITLAGDLGLTFLHRSQTWSPP 221
Query: 888 GLGTEGCWDQLSLPRTFTLLDPEASPLNMAFLNXXXXXXXXXXYLSKVPDPRPPLSHLLN 1067
GLGTEGCWDQL+ PR FTLLDP+AS L MAFLN +LS++P P PPLSHLL
Sbjct: 222 GLGTEGCWDQLTAPRVFTLLDPQASRLTMAFLNGALDGALLGNHLSQIPRPHPPLSHLLR 281
Query: 1068 QYY 1076
+YY
Sbjct: 282 EYY 284
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 37,674,652
Number of extensions: 1075850
Number of successful extensions: 4899
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4829
Number of HSP's successfully gapped: 1
Length of query: 358
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 255
Effective length of database: 12,523,851
Effective search space: 3193582005
Effective search space used: 3193582005
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003771
(1076 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_998903.1| N-acetylmuramoyl-L-alanine amidase precursor [S... 591 e-169
Alignment gi|XP_003356370.1| PREDICTED: n-acetylmuramoyl-L-alanine amidas... 555 e-158
>ref|NP_998903.1| N-acetylmuramoyl-L-alanine amidase precursor [Sus scrofa].
Length = 598
Score = 591 bits (1523), Expect = e-169
Identities = 301/326 (92%), Positives = 303/326 (92%)
Frame = +3
Query: 99 MSPGNWKTTMVVRXXXXXXXXXXXQPEPGTATLPLLMDSVIQALAELEQKSPATEAGHIA 278
MSPGNWKTTMVVR QPEPGTATLPLLMDSVIQALAELE+KSPATEAGHIA
Sbjct: 1 MSPGNWKTTMVVRGILLILYGLLLQPEPGTATLPLLMDSVIQALAELERKSPATEAGHIA 60
Query: 279 SMWLLSAQGSGAHNPLPRFLLEGQSLKTAKLAPPSLSPEFQGLIEEVARHGVQDGKEYGV 458
SMWLLSAQGSGAHNPLPRFLLEGQSLKTAKLAPPSLSPEFQGLIEEVARHGVQDGKEYGV
Sbjct: 61 SMWLLSAQGSGAHNPLPRFLLEGQSLKTAKLAPPSLSPEFQGLIEEVARHGVQDGKEYGV 120
Query: 459 VLAPDGSTVAVEPLLAGLEAGLQGHRVVNLPLDSTATFPDIGATVPDLKATSSAHKDTSA 638
VLAPDGSTVAVEPLLAGLEAGLQGHRVVNLPLDSTATFPDIGATVPDLKATSSAHKDTSA
Sbjct: 121 VLAPDGSTVAVEPLLAGLEAGLQGHRVVNLPLDSTATFPDIGATVPDLKATSSAHKDTSA 180
Query: 639 DVNSADVGTLSPNVRDTDVDAEVTFLDVRPSSTGVQVTSPDVQASSPDTKAKSPTTVDSL 818
DVNSADVGTLSPNVRDTDVDAEVTFLDVRPSSTGVQVTSPDVQ SSPDTKAKSPTTVDSL
Sbjct: 181 DVNSADVGTLSPNVRDTDVDAEVTFLDVRPSSTGVQVTSPDVQVSSPDTKAKSPTTVDSL 240
Query: 819 LMVTLARDLGLHFLQGAQTESNSGLGTEGCWDQLSLPRTFTLLDPEASPLNMAFLNXXXX 998
LMVTLARDLGLHFLQGAQTESNSGLGTEGCWDQLSLPRTFTLLDPEASPL MAFLN
Sbjct: 241 LMVTLARDLGLHFLQGAQTESNSGLGTEGCWDQLSLPRTFTLLDPEASPLTMAFLNGALD 300
Query: 999 XXXXXXYLSKVPDPRPPLSHLLNQYY 1076
YLSKVP+PRPPLSHLLNQYY
Sbjct: 301 GALLGDYLSKVPEPRPPLSHLLNQYY 326
>ref|XP_003356370.1| PREDICTED: n-acetylmuramoyl-L-alanine amidase-like [Sus scrofa].
Length = 467
Score = 555 bits (1431), Expect = e-158
Identities = 283/295 (95%), Positives = 284/295 (96%)
Frame = +3
Query: 192 TLPLLMDSVIQALAELEQKSPATEAGHIASMWLLSAQGSGAHNPLPRFLLEGQSLKTAKL 371
TLPLLMDSVIQALAELEQKSPATEAGHIASMWLLSAQGSGAHNPLPRFLLEGQSLKTAKL
Sbjct: 96 TLPLLMDSVIQALAELEQKSPATEAGHIASMWLLSAQGSGAHNPLPRFLLEGQSLKTAKL 155
Query: 372 APPSLSPEFQGLIEEVARHGVQDGKEYGVVLAPDGSTVAVEPLLAGLEAGLQGHRVVNLP 551
APPSLSPEFQGLIEEVARHGVQDGKEYGVVLAPDGSTVAVEPLLAGLEAGLQGHRVVNLP
Sbjct: 156 APPSLSPEFQGLIEEVARHGVQDGKEYGVVLAPDGSTVAVEPLLAGLEAGLQGHRVVNLP 215
Query: 552 LDSTATFPDIGATVPDLKATSSAHKDTSADVNSADVGTLSPNVRDTDVDAEVTFLDVRPS 731
LDSTATFPDIGATVPDLKATSSAHKDTSADVNSADVGTLSPNVRDTDVDAEVTFLDVRPS
Sbjct: 216 LDSTATFPDIGATVPDLKATSSAHKDTSADVNSADVGTLSPNVRDTDVDAEVTFLDVRPS 275
Query: 732 STGVQVTSPDVQASSPDTKAKSPTTVDSLLMVTLARDLGLHFLQGAQTESNSGLGTEGCW 911
STGVQVTSPDVQASSPDTKAKSPTTVDSLLMVTLARDLGLHFLQGAQTESNSGLGTEGCW
Sbjct: 276 STGVQVTSPDVQASSPDTKAKSPTTVDSLLMVTLARDLGLHFLQGAQTESNSGLGTEGCW 335
Query: 912 DQLSLPRTFTLLDPEASPLNMAFLNXXXXXXXXXXYLSKVPDPRPPLSHLLNQYY 1076
DQLSLPRTFTLLDPEASPL MAFLN YLSKVP+PRPPLSHLLNQYY
Sbjct: 336 DQLSLPRTFTLLDPEASPLTMAFLNGALDGALLGDYLSKVPEPRPPLSHLLNQYY 390
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 28,129,030
Number of extensions: 819719
Number of successful extensions: 3765
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3750
Number of HSP's successfully gapped: 2
Length of query: 358
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 258
Effective length of database: 8,854,232
Effective search space: 2284391856
Effective search space used: 2284391856
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003771
(1076 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 1711 0.0
Sscrofa_Chr06 375 e-101
>Sscrofa_Chr02
|| Length = 162569375
Score = 1711 bits (863), Expect = 0.0
Identities = 885/891 (99%), Gaps = 1/891 (0%)
Strand = Plus / Minus
Query: 186 acagcgaccctgcccctgcttatggattctgtcatccaggccctggctgagctcgagcag 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61570996 acagcgaccctgcccctgcttatggattctgtcatccaggccctggctgagctcgagcag 61570937
Query: 246 aagtcaccagccactgaggccggccatattgcatctatgtggctgctgtcagcccaaggc 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61570936 aagtcaccagccactgaggccggccatattgcatctatgtggctgctgtcagcccaaggc 61570877
Query: 306 tctggtgcccacaatcccctccctcgcttcctgctggaggggcagagtctcaagactgcc 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61570876 tctggtgcccacaatcccctccctcgcttcctgctggaggggcagagtctcaagactgcc 61570817
Query: 366 aagctggctcctccttcgctgagcccagagtttcaaggcctgattgaggaggtagccaga 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61570816 aagctggctcctccttcgctgagcccagagtttcaaggcctgattgaggaggtagccaga 61570757
Query: 426 catggtgtgcaggacgggaaggaatacggagtggtgctggcacctgatggctcaaccgtg 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61570756 catggtgtgcaggacgggaaggaatacggagtggtgctggcacctgatggctcaaccgtg 61570697
Query: 486 gctgtggagcctcttctggcagggctggaggcagggctgcaggggcacagggtggtaaac 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61570696 gctgtggagcctcttctggcagggctggaggcagggctgcaggggcacagggtggtaaac 61570637
Query: 546 ctgcccttggacagcacagccacctttccagacattggagccacagttcctgatttaaaa 605
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61570636 ctgcccttggacagcacagccacctttccagacattggagccacagttcctgatttaaaa 61570577
Query: 606 gccacctcctcagcacacaaggatacctctgcagatgtcaactctgcagatgttggtact 665
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61570576 gccacctcctcagcacacaaggatacctctgcagatgtcaactctgcagatgttggtact 61570517
Query: 666 ttgtctccaaatgttagagacacagatgtagatgccgaagttacctttctagatgttaga 725
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61570516 ttgtctccaaatgttagagacacagatgtagatgccgaagttacctttctagatgttaga 61570457
Query: 726 cccagctctacaggtgtccaagtcacctctccagatgtccaagcctcttcaccagatacc 785
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 61570456 cccagctctacaggtgtccaagtcacctctccagatgtccaagcctcttca-cagatacc 61570398
Query: 786 aaagccaagtccccaaccactgtggacagcctcctcatggtcaccctggccagagacctg 845
||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61570397 aaaagccagtccccaaccactgtggacagcctcctcatggtcaccctggccagagacctg 61570338
Query: 846 ggcctacacttcctccagggtgcccagactgaaagcaattcaggactgggaactgagggc 905
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61570337 ggcctacacttcctccagggtgcccagactgaaagcaattcaggactgggaactgagggc 61570278
Query: 906 tgctgggaccagctctctcttccccggacattcacactcctggaccctgaggcatcaccc 965
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61570277 tgctgggaccagctctctcttccccggacattcacactcctggaccctgaggcatcaccc 61570218
Query: 966 ctcaacatggccttccttaatggtgccctggatggggccctccttggtgactacctgagc 1025
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61570217 ctcaccatggccttccttaatggtgccctggatggggccctccttggtgactacctgagc 61570158
Query: 1026 aaggttcctgacccccggccacccctcagccacctgctgaaccagtactac 1076
||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 61570157 aaggttcctgagccccggccacccctcagccacctgctgaaccagtactac 61570107
Score = 375 bits (189), Expect = e-101
Identities = 189/189 (100%)
Strand = Plus / Minus
Query: 1 ttcaccactggactttgacagcagccaaaggcacaactcaattctccatgcgtgtctcct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61572281 ttcaccactggactttgacagcagccaaaggcacaactcaattctccatgcgtgtctcct 61572222
Query: 61 ttcagctacaccgaggtctccactgaggtcaaccagatatgtcccctggaaactggaaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61572221 ttcagctacaccgaggtctccactgaggtcaaccagatatgtcccctggaaactggaaga 61572162
Query: 121 ccacaatggtggtccggggtatcctgttgatcctgtatggattgcttctgcagccggagc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61572161 ccacaatggtggtccggggtatcctgttgatcctgtatggattgcttctgcagccggagc 61572102
Query: 181 caggaacag 189
|||||||||
Sbjct: 61572101 caggaacag 61572093
>Sscrofa_Chr06
|| Length = 157765593
Score = 375 bits (189), Expect = e-101
Identities = 189/189 (100%)
Strand = Plus / Plus
Query: 1 ttcaccactggactttgacagcagccaaaggcacaactcaattctccatgcgtgtctcct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87478166 ttcaccactggactttgacagcagccaaaggcacaactcaattctccatgcgtgtctcct 87478225
Query: 61 ttcagctacaccgaggtctccactgaggtcaaccagatatgtcccctggaaactggaaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87478226 ttcagctacaccgaggtctccactgaggtcaaccagatatgtcccctggaaactggaaga 87478285
Query: 121 ccacaatggtggtccggggtatcctgttgatcctgtatggattgcttctgcagccggagc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87478286 ccacaatggtggtccggggtatcctgttgatcctgtatggattgcttctgcagccggagc 87478345
Query: 181 caggaacag 189
|||||||||
Sbjct: 87478346 caggaacag 87478354
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 33,480,112
Number of extensions: 249
Number of successful extensions: 249
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 248
Number of HSP's successfully gapped: 3
Length of query: 1076
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1055
Effective length of database: 2,808,413,156
Effective search space: 2962875879580
Effective search space used: 2962875879580
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)