Animal-Genome cDNA 20110601C-003771


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-003771
         (1076 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_002688604.1| PREDICTED: peptidoglycan recognition protein...   431   e-121
Alignment   gi|XP_588006.3| PREDICTED: peptidoglycan recognition protein L-...   431   e-121

>ref|XP_002688604.1| PREDICTED: peptidoglycan recognition protein L-like [Bos taurus].
          Length = 591

 Score =  431 bits (1109), Expect = e-121
 Identities = 227/326 (69%), Positives = 248/326 (76%)
 Frame = +3

Query: 99   MSPGNWKTTMVVRXXXXXXXXXXXQPEPGTATLPLLMDSVIQALAELEQKSPATEAGHIA 278
            MS GNWK T+VV+           QPEPGTATLPLLMDSVIQALAELEQK+PATEAGH A
Sbjct: 1    MSFGNWKPTVVVQGILWILYGLLLQPEPGTATLPLLMDSVIQALAELEQKAPATEAGHSA 60

Query: 279  SMWLLSAQGSGAHNPLPRFLLEGQSLKTAKLAPPSLSPEFQGLIEEVARHGVQDGKEYGV 458
            + WLL+AQGSG H+PL  FLLEG+SL T +L PPSLSPE +GL+ EVARH VQDGKEYGV
Sbjct: 61   AAWLLTAQGSGTHSPLYHFLLEGKSLNTTELDPPSLSPELRGLMGEVARHSVQDGKEYGV 120

Query: 459  VLAPDGSTVAVEPLLAGLEAGLQGHRVVNLPLDSTATFPDIGATVPDLKATSSAHKDTSA 638
            VLAPDGSTVAVEPLLAGL AGLQGHR+VNL L+STAT PD G T PDL  TS    D S 
Sbjct: 121  VLAPDGSTVAVEPLLAGLWAGLQGHRIVNLSLESTATPPDAGVTFPDLGPTSPGLSDASP 180

Query: 639  DVNSADVGTLSPNVRDTDVDAEVTFLDVRPSSTGVQVTSPDVQASSPDTKAKSPTTVDSL 818
            DV S DV  +SPNV   D D   T  +VRP        SPDVQASSPDTKAK PT VDSL
Sbjct: 181  DVTSGDVRAVSPNVSTKDTDVRATSPEVRPG-------SPDVQASSPDTKAKLPTAVDSL 233

Query: 819  LMVTLARDLGLHFLQGAQTESNSGLGTEGCWDQLSLPRTFTLLDPEASPLNMAFLNXXXX 998
            L+VTLAR LGL+FLQG QT ++SGLGTEGCWDQLS+PRTFTLLDPEASPL  AFLN    
Sbjct: 234  LVVTLARGLGLNFLQGPQTWNHSGLGTEGCWDQLSVPRTFTLLDPEASPLTTAFLNGALD 293

Query: 999  XXXXXXYLSKVPDPRPPLSHLLNQYY 1076
                  YLS+ P PRPPLSHLL+QYY
Sbjct: 294  GALLGDYLSRTPAPRPPLSHLLSQYY 319


>ref|XP_588006.3| PREDICTED: peptidoglycan recognition protein L-like [Bos taurus].
          Length = 591

 Score =  431 bits (1109), Expect = e-121
 Identities = 227/326 (69%), Positives = 248/326 (76%)
 Frame = +3

Query: 99   MSPGNWKTTMVVRXXXXXXXXXXXQPEPGTATLPLLMDSVIQALAELEQKSPATEAGHIA 278
            MS GNWK T+VV+           QPEPGTATLPLLMDSVIQALAELEQK+PATEAGH A
Sbjct: 1    MSFGNWKPTVVVQGILWILYGLLLQPEPGTATLPLLMDSVIQALAELEQKAPATEAGHSA 60

Query: 279  SMWLLSAQGSGAHNPLPRFLLEGQSLKTAKLAPPSLSPEFQGLIEEVARHGVQDGKEYGV 458
            + WLL+AQGSG H+PL  FLLEG+SL T +L PPSLSPE +GL+ EVARH VQDGKEYGV
Sbjct: 61   AAWLLTAQGSGTHSPLYHFLLEGKSLNTTELDPPSLSPELRGLMGEVARHSVQDGKEYGV 120

Query: 459  VLAPDGSTVAVEPLLAGLEAGLQGHRVVNLPLDSTATFPDIGATVPDLKATSSAHKDTSA 638
            VLAPDGSTVAVEPLLAGL AGLQGHR+VNL L+STAT PD G T PDL  TS    D S 
Sbjct: 121  VLAPDGSTVAVEPLLAGLWAGLQGHRIVNLSLESTATPPDAGVTFPDLGPTSPGLSDASP 180

Query: 639  DVNSADVGTLSPNVRDTDVDAEVTFLDVRPSSTGVQVTSPDVQASSPDTKAKSPTTVDSL 818
            DV S DV  +SPNV   D D   T  +VRP        SPDVQASSPDTKAK PT VDSL
Sbjct: 181  DVTSGDVRAVSPNVSTKDTDVRATSPEVRPG-------SPDVQASSPDTKAKLPTAVDSL 233

Query: 819  LMVTLARDLGLHFLQGAQTESNSGLGTEGCWDQLSLPRTFTLLDPEASPLNMAFLNXXXX 998
            L+VTLAR LGL+FLQG QT ++SGLGTEGCWDQLS+PRTFTLLDPEASPL  AFLN    
Sbjct: 234  LVVTLARGLGLNFLQGPQTWNHSGLGTEGCWDQLSVPRTFTLLDPEASPLTTAFLNGALD 293

Query: 999  XXXXXXYLSKVPDPRPPLSHLLNQYY 1076
                  YLS+ P PRPPLSHLL+QYY
Sbjct: 294  GALLGDYLSRTPAPRPPLSHLLSQYY 319


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 43,545,668
Number of extensions: 1270751
Number of successful extensions: 5946
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5780
Number of HSP's successfully gapped: 2
Length of query: 358
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 255
Effective length of database: 14,273,310
Effective search space: 3639694050
Effective search space used: 3639694050
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-003771
         (1076 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_852999.1| PREDICTED: similar to N-acetylmuramoyl-L-alanin...   139   4e-33

>ref|XP_852999.1| PREDICTED: similar to N-acetylmuramoyl-L-alanine amidase precursor
            (Peptidoglycan recognition protein long) (PGRP-L)
            (Peptidoglycan recognition protein 2) [Canis familiaris].
          Length = 429

 Score =  139 bits (351), Expect = 4e-33
 Identities = 68/97 (70%), Positives = 77/97 (79%)
 Frame = +3

Query: 786  KAKSPTTVDSLLMVTLARDLGLHFLQGAQTESNSGLGTEGCWDQLSLPRTFTLLDPEASP 965
            KA+SPTTVDSLL+VTLARDLGL FLQG QT S++GLGTEGCWDQLS PRTFTLL    SP
Sbjct: 58   KARSPTTVDSLLVVTLARDLGLSFLQGPQTWSHAGLGTEGCWDQLSAPRTFTLLHSGTSP 117

Query: 966  LNMAFLNXXXXXXXXXXYLSKVPDPRPPLSHLLNQYY 1076
            + MAFLN          YLS+ P+PRPPLSHLL++YY
Sbjct: 118  VTMAFLNGALDGVLLGDYLSRTPEPRPPLSHLLSEYY 154



 Score = 60.5 bits (145), Expect = 3e-09
 Identities = 29/33 (87%), Positives = 31/33 (93%)
 Frame = +3

Query: 177 EPGTATLPLLMDSVIQALAELEQKSPATEAGHI 275
           EPGTATLPLLMDSVIQALAELEQK PAT+A H+
Sbjct: 18  EPGTATLPLLMDSVIQALAELEQKVPATKASHV 50


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 45,313,366
Number of extensions: 1300582
Number of successful extensions: 6453
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6187
Number of HSP's successfully gapped: 2
Length of query: 358
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 254
Effective length of database: 15,407,560
Effective search space: 3913520240
Effective search space used: 3913520240
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-003771
         (1076 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_443122.3| N-acetylmuramoyl-L-alanine amidase precursor [H...   334   9e-92

>ref|NP_443122.3| N-acetylmuramoyl-L-alanine amidase precursor [Homo sapiens].
          Length = 576

 Score =  334 bits (856), Expect = 9e-92
 Identities = 188/309 (60%), Positives = 214/309 (69%), Gaps = 9/309 (2%)
 Frame = +3

Query: 177  EPGTATLPLLMDSVIQALAELEQKSPATEAGHIASMWLLSAQGSGAHNPLPRFLLEGQSL 356
            +PGTA+LPLLMDSVIQALAELEQK PA +  H AS WL+SA  SG HN L  FLL   SL
Sbjct: 17   DPGTASLPLLMDSVIQALAELEQKVPAAKTRHTASAWLMSAPNSGPHNRLYHFLLGAWSL 76

Query: 357  KTAKLAPPSLSPEFQGLIEEVARHGVQDGKEYGVVLAPDGSTVAVEPLLAGLEAGLQGHR 536
               +L P  LSPE  GL +EVARH V++GKEYGVVLAPDGSTVAVEPLLAGLEAGLQG R
Sbjct: 77   NATELDPCPLSPELLGLTKEVARHDVREGKEYGVVLAPDGSTVAVEPLLAGLEAGLQGRR 136

Query: 537  VVNLPLDSTA-------TFPDIGATVPDLKATSS-AHKDTSADVNSADVGTLSPNVRDTD 692
            V+NLPLDS A       TFPD+ A  PD++ATSS   +D S DV +AD+G  +P+     
Sbjct: 137  VINLPLDSMAAPWETGDTFPDVVAIAPDVRATSSPGLRDGSPDVTTADIGANTPDATK-- 194

Query: 693  VDAEVTFLDVRPSSTGVQVTSPDVQASSPDTKAKS-PTTVDSLLMVTLARDLGLHFLQGA 869
                                 PDVQAS PD KAKS PT VDSLL VTLA +LGL FL+G+
Sbjct: 195  -------------------GCPDVQASLPDAKAKSPPTMVDSLLAVTLAGNLGLTFLRGS 235

Query: 870  QTESNSGLGTEGCWDQLSLPRTFTLLDPEASPLNMAFLNXXXXXXXXXXYLSKVPDPRPP 1049
            QT+S+  LGTEGCWDQLS PRTFTLLDP+AS L MAFLN          YLS+ P+PRP 
Sbjct: 236  QTQSHPDLGTEGCWDQLSAPRTFTLLDPKASLLTMAFLNGALDGVILGDYLSRTPEPRPS 295

Query: 1050 LSHLLNQYY 1076
            LSHLL+QYY
Sbjct: 296  LSHLLSQYY 304


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 44,591,283
Number of extensions: 1282448
Number of successful extensions: 5765
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5681
Number of HSP's successfully gapped: 1
Length of query: 358
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 254
Effective length of database: 14,868,908
Effective search space: 3776702632
Effective search space used: 3776702632
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-003771
         (1076 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_067294.2| N-acetylmuramoyl-L-alanine amidase precursor [M...   284   1e-76

>ref|NP_067294.2| N-acetylmuramoyl-L-alanine amidase precursor [Mus musculus].
          Length = 530

 Score =  284 bits (726), Expect = 1e-76
 Identities = 164/303 (54%), Positives = 193/303 (63%), Gaps = 2/303 (0%)
 Frame = +3

Query: 174  PEPGTAT-LPLLMDSVIQALAELEQKSPATEAGHIASMWLLSAQGSGAHNPL-PRFLLEG 347
            PEPG A+ LPLLMDS+IQALAELEQK P TEA   AS W+LSA+ S  HN L  R LL+ 
Sbjct: 17   PEPGAASSLPLLMDSIIQALAELEQKVPVTEASITASAWILSAKNSSTHNSLHQRLLLKA 76

Query: 348  QSLKTAKLAPPSLSPEFQGLIEEVARHGVQDGKEYGVVLAPDGSTVAVEPLLAGLEAGLQ 527
             S  T +  P SLSPE Q LI EVA+H VQ+G+EYGVVLAPDGSTVAV+PLL GLEAGLQ
Sbjct: 77   PSHNTTEPDPHSLSPELQALISEVAQHDVQNGREYGVVLAPDGSTVAVKPLLFGLEAGLQ 136

Query: 528  GHRVVNLPLDSTATFPDIGATVPDLKATSSAHKDTSADVNSADVGTLSPNVRDTDVDAEV 707
             H V NLP D  A   D G T+ +++AT                                
Sbjct: 137  AHSVANLPSDCLAIPCDTGDTLANIRATWPG----------------------------- 167

Query: 708  TFLDVRPSSTGVQVTSPDVQASSPDTKAKSPTTVDSLLMVTLARDLGLHFLQGAQTESNS 887
              +D  P+++     SPDV A+ P+ KAK+PTTVD LL +TLA DLGL FL  +QT S  
Sbjct: 168  -LMDAFPNAS-----SPDVGATLPNDKAKTPTTVDRLLAITLAGDLGLTFLHRSQTWSPP 221

Query: 888  GLGTEGCWDQLSLPRTFTLLDPEASPLNMAFLNXXXXXXXXXXYLSKVPDPRPPLSHLLN 1067
            GLGTEGCWDQL+ PR FTLLDP+AS L MAFLN          +LS++P P PPLSHLL 
Sbjct: 222  GLGTEGCWDQLTAPRVFTLLDPQASRLTMAFLNGALDGALLGNHLSQIPRPHPPLSHLLR 281

Query: 1068 QYY 1076
            +YY
Sbjct: 282  EYY 284


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 37,674,652
Number of extensions: 1075850
Number of successful extensions: 4899
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4829
Number of HSP's successfully gapped: 1
Length of query: 358
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 255
Effective length of database: 12,523,851
Effective search space: 3193582005
Effective search space used: 3193582005
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-003771
         (1076 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_998903.1| N-acetylmuramoyl-L-alanine amidase precursor [S...   591   e-169
Alignment   gi|XP_003356370.1| PREDICTED: n-acetylmuramoyl-L-alanine amidas...   555   e-158

>ref|NP_998903.1| N-acetylmuramoyl-L-alanine amidase precursor [Sus scrofa].
          Length = 598

 Score =  591 bits (1523), Expect = e-169
 Identities = 301/326 (92%), Positives = 303/326 (92%)
 Frame = +3

Query: 99   MSPGNWKTTMVVRXXXXXXXXXXXQPEPGTATLPLLMDSVIQALAELEQKSPATEAGHIA 278
            MSPGNWKTTMVVR           QPEPGTATLPLLMDSVIQALAELE+KSPATEAGHIA
Sbjct: 1    MSPGNWKTTMVVRGILLILYGLLLQPEPGTATLPLLMDSVIQALAELERKSPATEAGHIA 60

Query: 279  SMWLLSAQGSGAHNPLPRFLLEGQSLKTAKLAPPSLSPEFQGLIEEVARHGVQDGKEYGV 458
            SMWLLSAQGSGAHNPLPRFLLEGQSLKTAKLAPPSLSPEFQGLIEEVARHGVQDGKEYGV
Sbjct: 61   SMWLLSAQGSGAHNPLPRFLLEGQSLKTAKLAPPSLSPEFQGLIEEVARHGVQDGKEYGV 120

Query: 459  VLAPDGSTVAVEPLLAGLEAGLQGHRVVNLPLDSTATFPDIGATVPDLKATSSAHKDTSA 638
            VLAPDGSTVAVEPLLAGLEAGLQGHRVVNLPLDSTATFPDIGATVPDLKATSSAHKDTSA
Sbjct: 121  VLAPDGSTVAVEPLLAGLEAGLQGHRVVNLPLDSTATFPDIGATVPDLKATSSAHKDTSA 180

Query: 639  DVNSADVGTLSPNVRDTDVDAEVTFLDVRPSSTGVQVTSPDVQASSPDTKAKSPTTVDSL 818
            DVNSADVGTLSPNVRDTDVDAEVTFLDVRPSSTGVQVTSPDVQ SSPDTKAKSPTTVDSL
Sbjct: 181  DVNSADVGTLSPNVRDTDVDAEVTFLDVRPSSTGVQVTSPDVQVSSPDTKAKSPTTVDSL 240

Query: 819  LMVTLARDLGLHFLQGAQTESNSGLGTEGCWDQLSLPRTFTLLDPEASPLNMAFLNXXXX 998
            LMVTLARDLGLHFLQGAQTESNSGLGTEGCWDQLSLPRTFTLLDPEASPL MAFLN    
Sbjct: 241  LMVTLARDLGLHFLQGAQTESNSGLGTEGCWDQLSLPRTFTLLDPEASPLTMAFLNGALD 300

Query: 999  XXXXXXYLSKVPDPRPPLSHLLNQYY 1076
                  YLSKVP+PRPPLSHLLNQYY
Sbjct: 301  GALLGDYLSKVPEPRPPLSHLLNQYY 326


>ref|XP_003356370.1| PREDICTED: n-acetylmuramoyl-L-alanine amidase-like [Sus scrofa].
          Length = 467

 Score =  555 bits (1431), Expect = e-158
 Identities = 283/295 (95%), Positives = 284/295 (96%)
 Frame = +3

Query: 192  TLPLLMDSVIQALAELEQKSPATEAGHIASMWLLSAQGSGAHNPLPRFLLEGQSLKTAKL 371
            TLPLLMDSVIQALAELEQKSPATEAGHIASMWLLSAQGSGAHNPLPRFLLEGQSLKTAKL
Sbjct: 96   TLPLLMDSVIQALAELEQKSPATEAGHIASMWLLSAQGSGAHNPLPRFLLEGQSLKTAKL 155

Query: 372  APPSLSPEFQGLIEEVARHGVQDGKEYGVVLAPDGSTVAVEPLLAGLEAGLQGHRVVNLP 551
            APPSLSPEFQGLIEEVARHGVQDGKEYGVVLAPDGSTVAVEPLLAGLEAGLQGHRVVNLP
Sbjct: 156  APPSLSPEFQGLIEEVARHGVQDGKEYGVVLAPDGSTVAVEPLLAGLEAGLQGHRVVNLP 215

Query: 552  LDSTATFPDIGATVPDLKATSSAHKDTSADVNSADVGTLSPNVRDTDVDAEVTFLDVRPS 731
            LDSTATFPDIGATVPDLKATSSAHKDTSADVNSADVGTLSPNVRDTDVDAEVTFLDVRPS
Sbjct: 216  LDSTATFPDIGATVPDLKATSSAHKDTSADVNSADVGTLSPNVRDTDVDAEVTFLDVRPS 275

Query: 732  STGVQVTSPDVQASSPDTKAKSPTTVDSLLMVTLARDLGLHFLQGAQTESNSGLGTEGCW 911
            STGVQVTSPDVQASSPDTKAKSPTTVDSLLMVTLARDLGLHFLQGAQTESNSGLGTEGCW
Sbjct: 276  STGVQVTSPDVQASSPDTKAKSPTTVDSLLMVTLARDLGLHFLQGAQTESNSGLGTEGCW 335

Query: 912  DQLSLPRTFTLLDPEASPLNMAFLNXXXXXXXXXXYLSKVPDPRPPLSHLLNQYY 1076
            DQLSLPRTFTLLDPEASPL MAFLN          YLSKVP+PRPPLSHLLNQYY
Sbjct: 336  DQLSLPRTFTLLDPEASPLTMAFLNGALDGALLGDYLSKVPEPRPPLSHLLNQYY 390


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 28,129,030
Number of extensions: 819719
Number of successful extensions: 3765
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3750
Number of HSP's successfully gapped: 2
Length of query: 358
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 258
Effective length of database: 8,854,232
Effective search space: 2284391856
Effective search space used: 2284391856
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-003771
         (1076 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr02                                                        1711   0.0  
Sscrofa_Chr06                                                         375   e-101

>Sscrofa_Chr02 
||          Length = 162569375

 Score = 1711 bits (863), Expect = 0.0
 Identities = 885/891 (99%), Gaps = 1/891 (0%)
 Strand = Plus / Minus

                                                                            
Query: 186      acagcgaccctgcccctgcttatggattctgtcatccaggccctggctgagctcgagcag 245
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61570996 acagcgaccctgcccctgcttatggattctgtcatccaggccctggctgagctcgagcag 61570937

                                                                            
Query: 246      aagtcaccagccactgaggccggccatattgcatctatgtggctgctgtcagcccaaggc 305
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61570936 aagtcaccagccactgaggccggccatattgcatctatgtggctgctgtcagcccaaggc 61570877

                                                                            
Query: 306      tctggtgcccacaatcccctccctcgcttcctgctggaggggcagagtctcaagactgcc 365
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61570876 tctggtgcccacaatcccctccctcgcttcctgctggaggggcagagtctcaagactgcc 61570817

                                                                            
Query: 366      aagctggctcctccttcgctgagcccagagtttcaaggcctgattgaggaggtagccaga 425
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61570816 aagctggctcctccttcgctgagcccagagtttcaaggcctgattgaggaggtagccaga 61570757

                                                                            
Query: 426      catggtgtgcaggacgggaaggaatacggagtggtgctggcacctgatggctcaaccgtg 485
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61570756 catggtgtgcaggacgggaaggaatacggagtggtgctggcacctgatggctcaaccgtg 61570697

                                                                            
Query: 486      gctgtggagcctcttctggcagggctggaggcagggctgcaggggcacagggtggtaaac 545
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61570696 gctgtggagcctcttctggcagggctggaggcagggctgcaggggcacagggtggtaaac 61570637

                                                                            
Query: 546      ctgcccttggacagcacagccacctttccagacattggagccacagttcctgatttaaaa 605
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61570636 ctgcccttggacagcacagccacctttccagacattggagccacagttcctgatttaaaa 61570577

                                                                            
Query: 606      gccacctcctcagcacacaaggatacctctgcagatgtcaactctgcagatgttggtact 665
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61570576 gccacctcctcagcacacaaggatacctctgcagatgtcaactctgcagatgttggtact 61570517

                                                                            
Query: 666      ttgtctccaaatgttagagacacagatgtagatgccgaagttacctttctagatgttaga 725
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61570516 ttgtctccaaatgttagagacacagatgtagatgccgaagttacctttctagatgttaga 61570457

                                                                            
Query: 726      cccagctctacaggtgtccaagtcacctctccagatgtccaagcctcttcaccagatacc 785
                ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 61570456 cccagctctacaggtgtccaagtcacctctccagatgtccaagcctcttca-cagatacc 61570398

                                                                            
Query: 786      aaagccaagtccccaaccactgtggacagcctcctcatggtcaccctggccagagacctg 845
                |||  | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61570397 aaaagccagtccccaaccactgtggacagcctcctcatggtcaccctggccagagacctg 61570338

                                                                            
Query: 846      ggcctacacttcctccagggtgcccagactgaaagcaattcaggactgggaactgagggc 905
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61570337 ggcctacacttcctccagggtgcccagactgaaagcaattcaggactgggaactgagggc 61570278

                                                                            
Query: 906      tgctgggaccagctctctcttccccggacattcacactcctggaccctgaggcatcaccc 965
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61570277 tgctgggaccagctctctcttccccggacattcacactcctggaccctgaggcatcaccc 61570218

                                                                            
Query: 966      ctcaacatggccttccttaatggtgccctggatggggccctccttggtgactacctgagc 1025
                |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61570217 ctcaccatggccttccttaatggtgccctggatggggccctccttggtgactacctgagc 61570158

                                                                   
Query: 1026     aaggttcctgacccccggccacccctcagccacctgctgaaccagtactac 1076
                ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 61570157 aaggttcctgagccccggccacccctcagccacctgctgaaccagtactac 61570107



 Score =  375 bits (189), Expect = e-101
 Identities = 189/189 (100%)
 Strand = Plus / Minus

                                                                            
Query: 1        ttcaccactggactttgacagcagccaaaggcacaactcaattctccatgcgtgtctcct 60
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61572281 ttcaccactggactttgacagcagccaaaggcacaactcaattctccatgcgtgtctcct 61572222

                                                                            
Query: 61       ttcagctacaccgaggtctccactgaggtcaaccagatatgtcccctggaaactggaaga 120
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61572221 ttcagctacaccgaggtctccactgaggtcaaccagatatgtcccctggaaactggaaga 61572162

                                                                            
Query: 121      ccacaatggtggtccggggtatcctgttgatcctgtatggattgcttctgcagccggagc 180
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61572161 ccacaatggtggtccggggtatcctgttgatcctgtatggattgcttctgcagccggagc 61572102

                         
Query: 181      caggaacag 189
                |||||||||
Sbjct: 61572101 caggaacag 61572093


>Sscrofa_Chr06 
||          Length = 157765593

 Score =  375 bits (189), Expect = e-101
 Identities = 189/189 (100%)
 Strand = Plus / Plus

                                                                            
Query: 1        ttcaccactggactttgacagcagccaaaggcacaactcaattctccatgcgtgtctcct 60
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87478166 ttcaccactggactttgacagcagccaaaggcacaactcaattctccatgcgtgtctcct 87478225

                                                                            
Query: 61       ttcagctacaccgaggtctccactgaggtcaaccagatatgtcccctggaaactggaaga 120
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87478226 ttcagctacaccgaggtctccactgaggtcaaccagatatgtcccctggaaactggaaga 87478285

                                                                            
Query: 121      ccacaatggtggtccggggtatcctgttgatcctgtatggattgcttctgcagccggagc 180
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87478286 ccacaatggtggtccggggtatcctgttgatcctgtatggattgcttctgcagccggagc 87478345

                         
Query: 181      caggaacag 189
                |||||||||
Sbjct: 87478346 caggaacag 87478354


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 33,480,112
Number of extensions: 249
Number of successful extensions: 249
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 248
Number of HSP's successfully gapped: 3
Length of query: 1076
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1055
Effective length of database: 2,808,413,156
Effective search space: 2962875879580
Effective search space used: 2962875879580
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)