Animal-Genome cDNA 20110601C-003899


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-003899
         (1470 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001030431.1| glycerol-3-phosphate dehydrogenase [NAD+], c...   442   e-135
Alignment   gi|NP_001093833.1| glycerol-3-phosphate dehydrogenase 1-like pr...   334   e-102
Alignment   gi|XP_002690123.1| PREDICTED: KIAA0089-like [Bos taurus].            325   8e-99
Alignment   gi|XP_870601.2| PREDICTED: glycerol-3-phosphate dehydrogenase 1...   325   8e-99

>ref|NP_001030431.1| glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic [Bos taurus].
          Length = 349

 Score =  442 bits (1137), Expect(2) = e-135
 Identities = 217/231 (93%), Positives = 225/231 (97%)
 Frame = +1

Query: 679  MTGKKVCIVGSGNWGSAIAKIVGGNAGRLAHFDPRVTMWVFEEDVGGRKLTEIINTQHEN 858
            MTGKKVCIVGSGNWGSAIAKIVGGNA +LAHFDPRVTMWVFEED+GGRKLTEIINTQHEN
Sbjct: 1    MTGKKVCIVGSGNWGSAIAKIVGGNAAQLAHFDPRVTMWVFEEDIGGRKLTEIINTQHEN 60

Query: 859  IKYLPGHKLPPNVVAVPDVVQASADADILIFVVPHQFIGKICDQLKGHLKADAIGLSLIK 1038
            +KYLPGHKLPPNVVAVPDVVQA+ADADILIFVVPHQFIGKICDQLKGHLKAD IG+SLIK
Sbjct: 61   VKYLPGHKLPPNVVAVPDVVQAAADADILIFVVPHQFIGKICDQLKGHLKADTIGVSLIK 120

Query: 1039 GVDEGPDGLKLISEVIGERLGIPMSVLMGANIANEVADEKFCETTIGCKDLAQGQLLKEL 1218
            G+DEGP GLKLISEVIGERLGIPMSVLMGANIANEVADEKFCETTIG K+ A GQLLKEL
Sbjct: 121  GLDEGPKGLKLISEVIGERLGIPMSVLMGANIANEVADEKFCETTIGSKNQAHGQLLKEL 180

Query: 1219 MQTPNFRVTVVQEVDTVEICGALKNIVAVGAGFCDGLGFGDNTKAAVIRLG 1371
            MQTPNFR+TVVQEVDTVEICGALKNIVAVGAGFCDGLGFGDNTKAAVIRLG
Sbjct: 181  MQTPNFRITVVQEVDTVEICGALKNIVAVGAGFCDGLGFGDNTKAAVIRLG 231



 Score = 61.2 bits (147), Expect(2) = e-135
 Identities = 29/33 (87%), Positives = 30/33 (90%)
 Frame = +2

Query: 1370 GLMEMIAFRKLFCHGPVSSATFLESCGIADLIT 1468
            GLMEMIAF KLFC G VSSATFLESCG+ADLIT
Sbjct: 231  GLMEMIAFAKLFCSGSVSSATFLESCGVADLIT 263


>ref|NP_001093833.1| glycerol-3-phosphate dehydrogenase 1-like protein [Bos taurus].
          Length = 351

 Score =  334 bits (857), Expect(2) = e-102
 Identities = 160/227 (70%), Positives = 190/227 (83%)
 Frame = +1

Query: 691  KVCIVGSGNWGSAIAKIVGGNAGRLAHFDPRVTMWVFEEDVGGRKLTEIINTQHENIKYL 870
            KVCIVGSGNWGSA+AKI+G N  +L  F   V MWVFEE V GRKLT+IIN  HEN+KYL
Sbjct: 7    KVCIVGSGNWGSAVAKIIGNNVRKLQKFASTVKMWVFEETVNGRKLTDIINNDHENVKYL 66

Query: 871  PGHKLPPNVVAVPDVVQASADADILIFVVPHQFIGKICDQLKGHLKADAIGLSLIKGVDE 1050
            PGHKLP NVVAV ++ +A  DAD+L+FV+PHQFI +ICD++ G +  DA+G++LIKG+DE
Sbjct: 67   PGHKLPENVVAVANLSEAVQDADLLVFVIPHQFIHRICDEITGRVPKDALGITLIKGIDE 126

Query: 1051 GPDGLKLISEVIGERLGIPMSVLMGANIANEVADEKFCETTIGCKDLAQGQLLKELMQTP 1230
            GP+GLKLIS++I E++GI +SVLMGANIANEVA  KFCETTIG K +  G L KEL+QTP
Sbjct: 127  GPEGLKLISDIIREKMGIDISVLMGANIANEVAAGKFCETTIGSKIMENGLLFKELLQTP 186

Query: 1231 NFRVTVVQEVDTVEICGALKNIVAVGAGFCDGLGFGDNTKAAVIRLG 1371
            NFR+TVV + DTVE+CGALKNIVAVGAGFCDGL  GDNTKAAVIRLG
Sbjct: 187  NFRITVVDDADTVELCGALKNIVAVGAGFCDGLLCGDNTKAAVIRLG 233



 Score = 58.2 bits (139), Expect(2) = e-102
 Identities = 26/33 (78%), Positives = 30/33 (90%)
 Frame = +2

Query: 1370 GLMEMIAFRKLFCHGPVSSATFLESCGIADLIT 1468
            GLMEMIAF ++FC G VS+ATFLESCG+ADLIT
Sbjct: 233  GLMEMIAFARIFCKGQVSTATFLESCGVADLIT 265


>ref|XP_002690123.1| PREDICTED: KIAA0089-like [Bos taurus].
          Length = 351

 Score =  325 bits (832), Expect(2) = 8e-99
 Identities = 157/227 (69%), Positives = 184/227 (81%)
 Frame = +1

Query: 691  KVCIVGSGNWGSAIAKIVGGNAGRLAHFDPRVTMWVFEEDVGGRKLTEIINTQHENIKYL 870
            KVCIVGSGNWGSAIAKI+G N  +L  F   V MWVFEE V GRKL +IIN  HEN+KYL
Sbjct: 7    KVCIVGSGNWGSAIAKIIGNNVMKLQKFASTVKMWVFEEMVNGRKLIDIINNDHENVKYL 66

Query: 871  PGHKLPPNVVAVPDVVQASADADILIFVVPHQFIGKICDQLKGHLKADAIGLSLIKGVDE 1050
            PGHKLP NV+AVP++ +A  DAD+L+FV+PHQFI  IC+++ G +   A+G+SLIKG+DE
Sbjct: 67   PGHKLPDNVIAVPNLSEAVWDADLLVFVIPHQFINSICEEISGKVPKGALGISLIKGIDE 126

Query: 1051 GPDGLKLISEVIGERLGIPMSVLMGANIANEVADEKFCETTIGCKDLAQGQLLKELMQTP 1230
            GP GLKLIS++I E++ I +SVLMGAN ANEVA EKFCETTIG K +  G L KEL+QTP
Sbjct: 127  GPQGLKLISDIIREKMDIDVSVLMGANTANEVAAEKFCETTIGSKVMEHGLLFKELLQTP 186

Query: 1231 NFRVTVVQEVDTVEICGALKNIVAVGAGFCDGLGFGDNTKAAVIRLG 1371
            NFR+ VV E D VE+CGALKNIVAVGAGFCDGL  GDNTKAAVIRLG
Sbjct: 187  NFRIKVVAEADAVELCGALKNIVAVGAGFCDGLHCGDNTKAAVIRLG 233



 Score = 55.8 bits (133), Expect(2) = 8e-99
 Identities = 25/33 (75%), Positives = 28/33 (84%)
 Frame = +2

Query: 1370 GLMEMIAFRKLFCHGPVSSATFLESCGIADLIT 1468
            GLMEMI F ++FC G VS ATFLESCG+ADLIT
Sbjct: 233  GLMEMITFARIFCKGHVSKATFLESCGVADLIT 265


>ref|XP_870601.2| PREDICTED: glycerol-3-phosphate dehydrogenase 1-like [Bos taurus].
          Length = 351

 Score =  325 bits (832), Expect(2) = 8e-99
 Identities = 157/227 (69%), Positives = 184/227 (81%)
 Frame = +1

Query: 691  KVCIVGSGNWGSAIAKIVGGNAGRLAHFDPRVTMWVFEEDVGGRKLTEIINTQHENIKYL 870
            KVCIVGSGNWGSAIAKI+G N  +L  F   V MWVFEE V GRKL +IIN  HEN+KYL
Sbjct: 7    KVCIVGSGNWGSAIAKIIGNNVMKLQKFASTVKMWVFEEMVNGRKLIDIINNDHENVKYL 66

Query: 871  PGHKLPPNVVAVPDVVQASADADILIFVVPHQFIGKICDQLKGHLKADAIGLSLIKGVDE 1050
            PGHKLP NV+AVP++ +A  DAD+L+FV+PHQFI  IC+++ G +   A+G+SLIKG+DE
Sbjct: 67   PGHKLPDNVIAVPNLSEAVWDADLLVFVIPHQFINSICEEISGKVPKGALGISLIKGIDE 126

Query: 1051 GPDGLKLISEVIGERLGIPMSVLMGANIANEVADEKFCETTIGCKDLAQGQLLKELMQTP 1230
            GP GLKLIS++I E++ I +SVLMGAN ANEVA EKFCETTIG K +  G L KEL+QTP
Sbjct: 127  GPQGLKLISDIIREKMDIDVSVLMGANTANEVAAEKFCETTIGSKVMEHGLLFKELLQTP 186

Query: 1231 NFRVTVVQEVDTVEICGALKNIVAVGAGFCDGLGFGDNTKAAVIRLG 1371
            NFR+ VV E D VE+CGALKNIVAVGAGFCDGL  GDNTKAAVIRLG
Sbjct: 187  NFRIKVVAEADAVELCGALKNIVAVGAGFCDGLHCGDNTKAAVIRLG 233



 Score = 55.8 bits (133), Expect(2) = 8e-99
 Identities = 25/33 (75%), Positives = 28/33 (84%)
 Frame = +2

Query: 1370 GLMEMIAFRKLFCHGPVSSATFLESCGIADLIT 1468
            GLMEMI F ++FC G VS ATFLESCG+ADLIT
Sbjct: 233  GLMEMITFARIFCKGHVSKATFLESCGVADLIT 265


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 59,716,992
Number of extensions: 1804698
Number of successful extensions: 10210
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 10056
Number of HSP's successfully gapped: 8
Length of query: 490
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 384
Effective length of database: 14,174,046
Effective search space: 5442833664
Effective search space used: 5442833664
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-003899
         (1470 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_850380.1| PREDICTED: similar to glycerol-3-phosphate dehy...   431   e-132
Alignment   gi|XP_861309.1| PREDICTED: similar to glycerol-3-phosphate dehy...   421   e-129
Alignment   gi|XP_861284.1| PREDICTED: similar to glycerol-3-phosphate dehy...   410   e-126
Alignment   gi|XP_542745.2| PREDICTED: similar to glycerol-3-phosphate dehy...   339   e-104

>ref|XP_850380.1| PREDICTED: similar to glycerol-3-phosphate dehydrogenase 1 (soluble)
            isoform 2 [Canis familiaris].
          Length = 349

 Score =  431 bits (1107), Expect(2) = e-132
 Identities = 209/231 (90%), Positives = 221/231 (95%)
 Frame = +1

Query: 679  MTGKKVCIVGSGNWGSAIAKIVGGNAGRLAHFDPRVTMWVFEEDVGGRKLTEIINTQHEN 858
            M GK+VCI+GSGNWGSAIAKIVGGNA +L+HFDPRVTMWVFEEDVGGRKLTEIINTQHEN
Sbjct: 1    MAGKRVCIIGSGNWGSAIAKIVGGNAAQLSHFDPRVTMWVFEEDVGGRKLTEIINTQHEN 60

Query: 859  IKYLPGHKLPPNVVAVPDVVQASADADILIFVVPHQFIGKICDQLKGHLKADAIGLSLIK 1038
            +KYLPGHKLPPNVVAVPDVVQA+ DADILIFVVPHQFI KIC QLKGHLKA+AIG+SLIK
Sbjct: 61   VKYLPGHKLPPNVVAVPDVVQAATDADILIFVVPHQFISKICGQLKGHLKANAIGVSLIK 120

Query: 1039 GVDEGPDGLKLISEVIGERLGIPMSVLMGANIANEVADEKFCETTIGCKDLAQGQLLKEL 1218
            G+DEGP GLKLISEVIGE LGIPMSVLMGANIANEVAD+KFCETTIGCKD  QGQLLK L
Sbjct: 121  GIDEGPKGLKLISEVIGEHLGIPMSVLMGANIANEVADDKFCETTIGCKDQTQGQLLKML 180

Query: 1219 MQTPNFRVTVVQEVDTVEICGALKNIVAVGAGFCDGLGFGDNTKAAVIRLG 1371
            MQTPNFR+TVV+EVDTVEICGALKNIVAVGAGFCDGLGFGDNTKAAVIRLG
Sbjct: 181  MQTPNFRITVVKEVDTVEICGALKNIVAVGAGFCDGLGFGDNTKAAVIRLG 231



 Score = 60.1 bits (144), Expect(2) = e-132
 Identities = 28/33 (84%), Positives = 29/33 (87%)
 Frame = +2

Query: 1370 GLMEMIAFRKLFCHGPVSSATFLESCGIADLIT 1468
            GLMEMIAF KLFC GPVS  TFLESCG+ADLIT
Sbjct: 231  GLMEMIAFAKLFCSGPVSCDTFLESCGVADLIT 263


>ref|XP_861309.1| PREDICTED: similar to glycerol-3-phosphate dehydrogenase 1 (soluble)
            isoform 4 [Canis familiaris].
          Length = 318

 Score =  421 bits (1083), Expect(2) = e-129
 Identities = 205/231 (88%), Positives = 217/231 (93%)
 Frame = +1

Query: 679  MTGKKVCIVGSGNWGSAIAKIVGGNAGRLAHFDPRVTMWVFEEDVGGRKLTEIINTQHEN 858
            M GK+VCI+GSGNWGSAIAKIVGGNA +L+HFDPRVTMWVFEEDVGGRKLTEIINTQHEN
Sbjct: 1    MAGKRVCIIGSGNWGSAIAKIVGGNAAQLSHFDPRVTMWVFEEDVGGRKLTEIINTQHEN 60

Query: 859  IKYLPGHKLPPNVVAVPDVVQASADADILIFVVPHQFIGKICDQLKGHLKADAIGLSLIK 1038
            +KYLPGHKLPPNVVAVPDVVQA+ DADILIFVVPHQFI KIC QLKGHLKA+AI  S  +
Sbjct: 61   VKYLPGHKLPPNVVAVPDVVQAATDADILIFVVPHQFISKICGQLKGHLKANAIAPSCAQ 120

Query: 1039 GVDEGPDGLKLISEVIGERLGIPMSVLMGANIANEVADEKFCETTIGCKDLAQGQLLKEL 1218
            G+DEGP GLKLISEVIGE LGIPMSVLMGANIANEVAD+KFCETTIGCKD  QGQLLK L
Sbjct: 121  GIDEGPKGLKLISEVIGEHLGIPMSVLMGANIANEVADDKFCETTIGCKDQTQGQLLKML 180

Query: 1219 MQTPNFRVTVVQEVDTVEICGALKNIVAVGAGFCDGLGFGDNTKAAVIRLG 1371
            MQTPNFR+TVV+EVDTVEICGALKNIVAVGAGFCDGLGFGDNTKAAVIRLG
Sbjct: 181  MQTPNFRITVVKEVDTVEICGALKNIVAVGAGFCDGLGFGDNTKAAVIRLG 231



 Score = 60.1 bits (144), Expect(2) = e-129
 Identities = 28/33 (84%), Positives = 29/33 (87%)
 Frame = +2

Query: 1370 GLMEMIAFRKLFCHGPVSSATFLESCGIADLIT 1468
            GLMEMIAF KLFC GPVS  TFLESCG+ADLIT
Sbjct: 231  GLMEMIAFAKLFCSGPVSCDTFLESCGVADLIT 263


>ref|XP_861284.1| PREDICTED: similar to glycerol-3-phosphate dehydrogenase 1 (soluble)
            isoform 3 [Canis familiaris].
          Length = 328

 Score =  410 bits (1055), Expect(2) = e-126
 Identities = 205/241 (85%), Positives = 217/241 (90%), Gaps = 10/241 (4%)
 Frame = +1

Query: 679  MTGKKVCIVGSGNWGSAIAKIVGGNAGRLAHFDPRVTMWVFEEDVGGRKLTEIINTQHEN 858
            M GK+VCI+GSGNWGSAIAKIVGGNA +L+HFDPRVTMWVFEEDVGGRKLTEIINTQHEN
Sbjct: 1    MAGKRVCIIGSGNWGSAIAKIVGGNAAQLSHFDPRVTMWVFEEDVGGRKLTEIINTQHEN 60

Query: 859  IKYLPGHKLPPNVVAVPDVVQASADADILIFVVPHQFIGKICDQLKGHLKADAIGLSLIK 1038
            +KYLPGHKLPPNVVAVPDVVQA+ DADILIFVVPHQFI KIC QLKGHLKA+AIG+SLIK
Sbjct: 61   VKYLPGHKLPPNVVAVPDVVQAATDADILIFVVPHQFISKICGQLKGHLKANAIGVSLIK 120

Query: 1039 GVDEGPD----------GLKLISEVIGERLGIPMSVLMGANIANEVADEKFCETTIGCKD 1188
              +  P           GLKLISEVIGE LGIPMSVLMGANIANEVAD+KFCETTIGCKD
Sbjct: 121  VPEISPSGQGSFRERGGGLKLISEVIGEHLGIPMSVLMGANIANEVADDKFCETTIGCKD 180

Query: 1189 LAQGQLLKELMQTPNFRVTVVQEVDTVEICGALKNIVAVGAGFCDGLGFGDNTKAAVIRL 1368
              QGQLLK LMQTPNFR+TVV+EVDTVEICGALKNIVAVGAGFCDGLGFGDNTKAAVIRL
Sbjct: 181  QTQGQLLKMLMQTPNFRITVVKEVDTVEICGALKNIVAVGAGFCDGLGFGDNTKAAVIRL 240

Query: 1369 G 1371
            G
Sbjct: 241  G 241



 Score = 60.1 bits (144), Expect(2) = e-126
 Identities = 28/33 (84%), Positives = 29/33 (87%)
 Frame = +2

Query: 1370 GLMEMIAFRKLFCHGPVSSATFLESCGIADLIT 1468
            GLMEMIAF KLFC GPVS  TFLESCG+ADLIT
Sbjct: 241  GLMEMIAFAKLFCSGPVSCDTFLESCGVADLIT 273


>ref|XP_542745.2| PREDICTED: similar to glycerol-3-phosphate dehydrogenase 1-like
            [Canis familiaris].
          Length = 351

 Score =  339 bits (870), Expect(2) = e-104
 Identities = 161/227 (70%), Positives = 192/227 (84%)
 Frame = +1

Query: 691  KVCIVGSGNWGSAIAKIVGGNAGRLAHFDPRVTMWVFEEDVGGRKLTEIINTQHENIKYL 870
            KVCIVGSGNWGSA+AKI+G N  +L  F   V MWVFEE V GRKLT+IIN  HEN+KYL
Sbjct: 7    KVCIVGSGNWGSAVAKIIGNNVKKLTKFASTVKMWVFEETVNGRKLTDIINNDHENVKYL 66

Query: 871  PGHKLPPNVVAVPDVVQASADADILIFVVPHQFIGKICDQLKGHLKADAIGLSLIKGVDE 1050
            PGHKLP NV+AVP++ +A  DAD+L+FV+PHQFI +ICD+L G +  DA+G++LIKG+DE
Sbjct: 67   PGHKLPENVIAVPNLGEAVKDADLLVFVIPHQFIHRICDELTGRVPKDALGITLIKGIDE 126

Query: 1051 GPDGLKLISEVIGERLGIPMSVLMGANIANEVADEKFCETTIGCKDLAQGQLLKELMQTP 1230
            GP+GLKLIS++I E++GI +SVLMGANIA+EVA EKFCETTIG K +  G L KEL+QTP
Sbjct: 127  GPEGLKLISDIIREKMGIDVSVLMGANIASEVAAEKFCETTIGSKIMENGLLFKELLQTP 186

Query: 1231 NFRVTVVQEVDTVEICGALKNIVAVGAGFCDGLGFGDNTKAAVIRLG 1371
            NFR+TVV + DTVE+CGALKNIVAVGAGFCDGL  GDNTKAAVIRLG
Sbjct: 187  NFRITVVDDADTVELCGALKNIVAVGAGFCDGLHSGDNTKAAVIRLG 233



 Score = 58.2 bits (139), Expect(2) = e-104
 Identities = 26/33 (78%), Positives = 30/33 (90%)
 Frame = +2

Query: 1370 GLMEMIAFRKLFCHGPVSSATFLESCGIADLIT 1468
            GLMEMIAF ++FC G VS+ATFLESCG+ADLIT
Sbjct: 233  GLMEMIAFARIFCKGQVSTATFLESCGVADLIT 265


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 62,327,655
Number of extensions: 1869546
Number of successful extensions: 10208
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 10081
Number of HSP's successfully gapped: 8
Length of query: 490
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 383
Effective length of database: 15,307,552
Effective search space: 5862792416
Effective search space used: 5862792416
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-003899
         (1470 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_005267.2| glycerol-3-phosphate dehydrogenase [NAD+], cyto...   437   e-135
Alignment   gi|NP_055956.1| glycerol-3-phosphate dehydrogenase 1-like prote...   334   e-102

>ref|NP_005267.2| glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic [Homo
            sapiens].
          Length = 349

 Score =  437 bits (1123), Expect(2) = e-135
 Identities = 213/231 (92%), Positives = 224/231 (96%)
 Frame = +1

Query: 679  MTGKKVCIVGSGNWGSAIAKIVGGNAGRLAHFDPRVTMWVFEEDVGGRKLTEIINTQHEN 858
            M  KKVCIVGSGNWGSAIAKIVGGNA +LA FDPRVTMWVFEED+GG+KLTEIINTQHEN
Sbjct: 1    MASKKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEEDIGGKKLTEIINTQHEN 60

Query: 859  IKYLPGHKLPPNVVAVPDVVQASADADILIFVVPHQFIGKICDQLKGHLKADAIGLSLIK 1038
            +KYLPGHKLPPNVVAVPDVVQA+ DADILIFVVPHQFIGKICDQLKGHLKA+A G+SLIK
Sbjct: 61   VKYLPGHKLPPNVVAVPDVVQAAEDADILIFVVPHQFIGKICDQLKGHLKANATGISLIK 120

Query: 1039 GVDEGPDGLKLISEVIGERLGIPMSVLMGANIANEVADEKFCETTIGCKDLAQGQLLKEL 1218
            GVDEGP+GLKLISEVIGERLGIPMSVLMGANIA+EVADEKFCETTIGCKD AQGQLLKEL
Sbjct: 121  GVDEGPNGLKLISEVIGERLGIPMSVLMGANIASEVADEKFCETTIGCKDPAQGQLLKEL 180

Query: 1219 MQTPNFRVTVVQEVDTVEICGALKNIVAVGAGFCDGLGFGDNTKAAVIRLG 1371
            MQTPNFR+TVVQEVDTVEICGALKN+VAVGAGFCDGLGFGDNTKAAVIRLG
Sbjct: 181  MQTPNFRITVVQEVDTVEICGALKNVVAVGAGFCDGLGFGDNTKAAVIRLG 231



 Score = 64.3 bits (155), Expect(2) = e-135
 Identities = 30/33 (90%), Positives = 31/33 (93%)
 Frame = +2

Query: 1370 GLMEMIAFRKLFCHGPVSSATFLESCGIADLIT 1468
            GLMEMIAF KLFC GPVSSATFLESCG+ADLIT
Sbjct: 231  GLMEMIAFAKLFCSGPVSSATFLESCGVADLIT 263


>ref|NP_055956.1| glycerol-3-phosphate dehydrogenase 1-like protein [Homo sapiens].
          Length = 351

 Score =  334 bits (856), Expect(2) = e-102
 Identities = 159/227 (70%), Positives = 190/227 (83%)
 Frame = +1

Query: 691  KVCIVGSGNWGSAIAKIVGGNAGRLAHFDPRVTMWVFEEDVGGRKLTEIINTQHENIKYL 870
            KVCIVGSGNWGSA+AKI+G N  +L  F   V MWVFEE V GRKLT+IIN  HEN+KYL
Sbjct: 7    KVCIVGSGNWGSAVAKIIGNNVKKLQKFASTVKMWVFEETVNGRKLTDIINNDHENVKYL 66

Query: 871  PGHKLPPNVVAVPDVVQASADADILIFVVPHQFIGKICDQLKGHLKADAIGLSLIKGVDE 1050
            PGHKLP NVVA+ ++ +A  DAD+L+FV+PHQFI +ICD++ G +   A+G++LIKG+DE
Sbjct: 67   PGHKLPENVVAMSNLSEAVQDADLLVFVIPHQFIHRICDEITGRVPKKALGITLIKGIDE 126

Query: 1051 GPDGLKLISEVIGERLGIPMSVLMGANIANEVADEKFCETTIGCKDLAQGQLLKELMQTP 1230
            GP+GLKLIS++I E++GI +SVLMGANIANEVA EKFCETTIG K +  G L KEL+QTP
Sbjct: 127  GPEGLKLISDIIREKMGIDISVLMGANIANEVAAEKFCETTIGSKVMENGLLFKELLQTP 186

Query: 1231 NFRVTVVQEVDTVEICGALKNIVAVGAGFCDGLGFGDNTKAAVIRLG 1371
            NFR+TVV + DTVE+CGALKNIVAVGAGFCDGL  GDNTKAAVIRLG
Sbjct: 187  NFRITVVDDADTVELCGALKNIVAVGAGFCDGLRCGDNTKAAVIRLG 233



 Score = 58.2 bits (139), Expect(2) = e-102
 Identities = 26/33 (78%), Positives = 30/33 (90%)
 Frame = +2

Query: 1370 GLMEMIAFRKLFCHGPVSSATFLESCGIADLIT 1468
            GLMEMIAF ++FC G VS+ATFLESCG+ADLIT
Sbjct: 233  GLMEMIAFARIFCKGQVSTATFLESCGVADLIT 265


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 60,965,307
Number of extensions: 1815347
Number of successful extensions: 9695
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 9570
Number of HSP's successfully gapped: 4
Length of query: 490
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 383
Effective length of database: 14,770,016
Effective search space: 5656916128
Effective search space used: 5656916128
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-003899
         (1470 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_034401.1| glycerol-3-phosphate dehydrogenase [NAD+], cyto...   440   e-135
Alignment   gi|NP_780589.3| glycerol-3-phosphate dehydrogenase 1-like prote...   338   e-104

>ref|NP_034401.1| glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic [Mus
            musculus].
          Length = 349

 Score =  440 bits (1131), Expect(2) = e-135
 Identities = 213/231 (92%), Positives = 225/231 (97%)
 Frame = +1

Query: 679  MTGKKVCIVGSGNWGSAIAKIVGGNAGRLAHFDPRVTMWVFEEDVGGRKLTEIINTQHEN 858
            M GKKVCIVGSGNWGSAIAKIVG NAGRLAHFDPRVTMWVFEED+GGRKLTEIINTQHEN
Sbjct: 1    MAGKKVCIVGSGNWGSAIAKIVGSNAGRLAHFDPRVTMWVFEEDIGGRKLTEIINTQHEN 60

Query: 859  IKYLPGHKLPPNVVAVPDVVQASADADILIFVVPHQFIGKICDQLKGHLKADAIGLSLIK 1038
            +KYLPGHKLPPNVVA+PDVVQA+  ADIL+FVVPHQFIGKICDQLKGHLKA+ IG+SLIK
Sbjct: 61   VKYLPGHKLPPNVVAIPDVVQAATGADILVFVVPHQFIGKICDQLKGHLKANTIGISLIK 120

Query: 1039 GVDEGPDGLKLISEVIGERLGIPMSVLMGANIANEVADEKFCETTIGCKDLAQGQLLKEL 1218
            GVDEGP+GLKLISEVIGERLGIPMSVLMGANIA+EVA+EKFCETTIGCKD AQGQLLK+L
Sbjct: 121  GVDEGPNGLKLISEVIGERLGIPMSVLMGANIASEVAEEKFCETTIGCKDPAQGQLLKDL 180

Query: 1219 MQTPNFRVTVVQEVDTVEICGALKNIVAVGAGFCDGLGFGDNTKAAVIRLG 1371
            MQTPNFR+TVVQEVDTVEICGALKNIVAVGAGFCDGLGFGDNTKAAVIRLG
Sbjct: 181  MQTPNFRITVVQEVDTVEICGALKNIVAVGAGFCDGLGFGDNTKAAVIRLG 231



 Score = 61.2 bits (147), Expect(2) = e-135
 Identities = 29/33 (87%), Positives = 30/33 (90%)
 Frame = +2

Query: 1370 GLMEMIAFRKLFCHGPVSSATFLESCGIADLIT 1468
            GLMEMIAF KLFC G VSSATFLESCG+ADLIT
Sbjct: 231  GLMEMIAFAKLFCSGTVSSATFLESCGVADLIT 263


>ref|NP_780589.3| glycerol-3-phosphate dehydrogenase 1-like protein [Mus musculus].
          Length = 351

 Score =  338 bits (868), Expect(2) = e-104
 Identities = 162/227 (71%), Positives = 190/227 (83%)
 Frame = +1

Query: 691  KVCIVGSGNWGSAIAKIVGGNAGRLAHFDPRVTMWVFEEDVGGRKLTEIINTQHENIKYL 870
            KVCIVGSGNWGSA+AKI+G N   L  F   V MWVFEE V GRKLT+IIN  HEN+KYL
Sbjct: 7    KVCIVGSGNWGSAVAKIIGSNVKTLQKFSSTVKMWVFEETVNGRKLTDIINNDHENVKYL 66

Query: 871  PGHKLPPNVVAVPDVVQASADADILIFVVPHQFIGKICDQLKGHLKADAIGLSLIKGVDE 1050
            PGHKLP NVVAVP++ +A  DAD+L+FV+PHQFI KICD++ G +   A+G++LIKG+DE
Sbjct: 67   PGHKLPENVVAVPNLSEAVQDADLLVFVIPHQFIHKICDEITGRVPEKALGITLIKGIDE 126

Query: 1051 GPDGLKLISEVIGERLGIPMSVLMGANIANEVADEKFCETTIGCKDLAQGQLLKELMQTP 1230
            GPDGLKLIS++I E++GI +SVLMGANIA+EVA EKFCETTIG K +  G L KEL+QTP
Sbjct: 127  GPDGLKLISDIIREKMGIDISVLMGANIASEVAAEKFCETTIGSKVMQNGLLFKELLQTP 186

Query: 1231 NFRVTVVQEVDTVEICGALKNIVAVGAGFCDGLGFGDNTKAAVIRLG 1371
            NFR+TVV + DTVE+CGALKNIVAVGAGFCDGL  GDNTKAAVIRLG
Sbjct: 187  NFRITVVDDADTVELCGALKNIVAVGAGFCDGLRCGDNTKAAVIRLG 233



 Score = 59.3 bits (142), Expect(2) = e-104
 Identities = 27/33 (81%), Positives = 30/33 (90%)
 Frame = +2

Query: 1370 GLMEMIAFRKLFCHGPVSSATFLESCGIADLIT 1468
            GLMEMIAF K+FC G VS+ATFLESCG+ADLIT
Sbjct: 233  GLMEMIAFAKIFCKGQVSTATFLESCGVADLIT 265


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 51,342,937
Number of extensions: 1498444
Number of successful extensions: 7668
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 7511
Number of HSP's successfully gapped: 4
Length of query: 490
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 385
Effective length of database: 12,463,779
Effective search space: 4798554915
Effective search space used: 4798554915
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-003899
         (1470 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001177169.1| glycerol-3-phosphate dehydrogenase [NAD+], c...   464   e-144

>ref|NP_001177169.1| glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic [Sus scrofa].
          Length = 349

 Score =  464 bits (1195), Expect(2) = e-144
 Identities = 230/231 (99%), Positives = 231/231 (100%)
 Frame = +1

Query: 679  MTGKKVCIVGSGNWGSAIAKIVGGNAGRLAHFDPRVTMWVFEEDVGGRKLTEIINTQHEN 858
            MTGKKVCIVGSGNWGSAIAKIVGGNAGRLAHFDPRVTMWVFEEDVGGRKLTEIINTQHEN
Sbjct: 1    MTGKKVCIVGSGNWGSAIAKIVGGNAGRLAHFDPRVTMWVFEEDVGGRKLTEIINTQHEN 60

Query: 859  IKYLPGHKLPPNVVAVPDVVQASADADILIFVVPHQFIGKICDQLKGHLKADAIGLSLIK 1038
            +KYLPGHKLPPNVVAVPDVVQASADADILIFVVPHQFIGKICDQLKGHLKADAIGLSLIK
Sbjct: 61   VKYLPGHKLPPNVVAVPDVVQASADADILIFVVPHQFIGKICDQLKGHLKADAIGLSLIK 120

Query: 1039 GVDEGPDGLKLISEVIGERLGIPMSVLMGANIANEVADEKFCETTIGCKDLAQGQLLKEL 1218
            GVDEGPDGLKLISEVIGERLGIPMSVLMGANIANEVADEKFCETTIGCKDLAQGQLLKEL
Sbjct: 121  GVDEGPDGLKLISEVIGERLGIPMSVLMGANIANEVADEKFCETTIGCKDLAQGQLLKEL 180

Query: 1219 MQTPNFRVTVVQEVDTVEICGALKNIVAVGAGFCDGLGFGDNTKAAVIRLG 1371
            MQTPNFRVTVVQEVDTVEICGALKNIVAVGAGFCDGLGFGDNTKAAVIRLG
Sbjct: 181  MQTPNFRVTVVQEVDTVEICGALKNIVAVGAGFCDGLGFGDNTKAAVIRLG 231



 Score = 68.2 bits (165), Expect(2) = e-144
 Identities = 32/33 (96%), Positives = 32/33 (96%)
 Frame = +2

Query: 1370 GLMEMIAFRKLFCHGPVSSATFLESCGIADLIT 1468
            GLMEMIAF KLFCHGPVSSATFLESCGIADLIT
Sbjct: 231  GLMEMIAFAKLFCHGPVSSATFLESCGIADLIT 263


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 38,670,198
Number of extensions: 1174193
Number of successful extensions: 6739
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6618
Number of HSP's successfully gapped: 2
Length of query: 490
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 387
Effective length of database: 8,779,541
Effective search space: 3397682367
Effective search space used: 3397682367
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-003899
         (1470 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr05                                                         402   e-109
Sscrofa_Chr13                                                         109   4e-21
Sscrofa_Chr01                                                          80   4e-12

>Sscrofa_Chr05 
||          Length = 111506441

 Score =  402 bits (203), Expect = e-109
 Identities = 203/203 (100%)
 Strand = Plus / Minus

                                                                            
Query: 28       aggcaaaaacaaggggttattttatgcataaacagccatcctttggggttctcatccagg 87
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16335790 aggcaaaaacaaggggttattttatgcataaacagccatcctttggggttctcatccagg 16335731

                                                                            
Query: 88       gacagaagcattctttctctcgtccatcacccgtaatcagtgctcccagctggcagcctg 147
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16335730 gacagaagcattctttctctcgtccatcacccgtaatcagtgctcccagctggcagcctg 16335671

                                                                            
Query: 148      gcagtggcgcctttgtcgcagggccagggccatggcgatgtgtggtgggaggctggctct 207
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16335670 gcagtggcgcctttgtcgcagggccagggccatggcgatgtgtggtgggaggctggctct 16335611

                                       
Query: 208      gtagtaggcacgcttttgttcct 230
                |||||||||||||||||||||||
Sbjct: 16335610 gtagtaggcacgcttttgttcct 16335588



 Score =  325 bits (164), Expect = 4e-86
 Identities = 180/184 (97%), Gaps = 1/184 (0%)
 Strand = Plus / Minus

                                                                            
Query: 1287     aaagaatatagtggccgtgggggctggcttctgtgatgggctgggctttggcgacaacac 1346
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16333269 aaagaatatagtggccgtgggggctggcttctgtgatgggctgggctttggcgacaacac 16333210

                                                                            
Query: 1347     caaggcggcggtgatccgactgggggctcatggagatgattgcctttcgcaagctcttct 1406
                ||||||||||||||||||||||||| ||||||||||||||||||||   |||||||||||
Sbjct: 16333209 caaggcggcggtgatccgactgggg-ctcatggagatgattgccttcgccaagctcttct 16333151

                                                                            
Query: 1407     gccacggccccgtgtcctccgccaccttcctggagagctgcggcatcgccgacctcatca 1466
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16333150 gccacggccccgtgtcctccgccaccttcctggagagctgcggcatcgccgacctcatca 16333091

                    
Query: 1467     cgac 1470
                ||||
Sbjct: 16333090 cgac 16333087



 Score =  281 bits (142), Expect = 5e-73
 Identities = 142/142 (100%)
 Strand = Plus / Minus

                                                                            
Query: 1037     agggggtagacgagggccccgacgggctgaagctcatctctgaagtgattggggagcgcc 1096
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16334498 agggggtagacgagggccccgacgggctgaagctcatctctgaagtgattggggagcgcc 16334439

                                                                            
Query: 1097     ttggcatccccatgagcgtgctgatgggggccaacattgccaatgaggtggctgatgaga 1156
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16334438 ttggcatccccatgagcgtgctgatgggggccaacattgccaatgaggtggctgatgaga 16334379

                                      
Query: 1157     agttctgtgagacaaccatcgg 1178
                ||||||||||||||||||||||
Sbjct: 16334378 agttctgtgagacaaccatcgg 16334357



 Score =  226 bits (114), Expect = 3e-56
 Identities = 114/114 (100%)
 Strand = Plus / Minus

                                                                            
Query: 1177     ggctgcaaggacctggcccagggacagcttctgaaggagttgatgcagacacccaatttc 1236
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16334053 ggctgcaaggacctggcccagggacagcttctgaaggagttgatgcagacacccaatttc 16333994

                                                                      
Query: 1237     cgtgtcacggtggtgcaggaggtggacacagtagagatctgcggggccttaaag 1290
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16333993 cgtgtcacggtggtgcaggaggtggacacagtagagatctgcggggccttaaag 16333940


>Sscrofa_Chr13 
||          Length = 218635234

 Score =  109 bits (55), Expect = 4e-21
 Identities = 143/171 (83%), Gaps = 1/171 (0%)
 Strand = Plus / Minus

                                                                            
Query: 1297     gtggccgtgggggctggcttctgtgatgggctgggctttggcgacaacaccaaggcggcg 1356
                ||||||||||| ||||| ||||||||||| ||  ||| ||||||||||||||| || || 
Sbjct: 20627525 gtggccgtgggagctgggttctgtgatggcctccgctgtggcgacaacaccaaagctgcc 20627466

                                                                            
Query: 1357     gtgatccgactgggggctcatggagatgattgcctttcgcaagctcttctgccacggccc 1416
                || ||||| |||||| |||||||| ||||||||||||  || | |||||||| | |||| 
Sbjct: 20627465 gtcatccgtctgggg-ctcatggaaatgattgcctttgccaggatcttctgcaagggcca 20627407

                                                                   
Query: 1417     cgtgtcctccgccaccttcctggagagctgcggcatcgccgacctcatcac 1467
                 |||||  | |||||||||||||||||||| ||| | |||||||| |||||
Sbjct: 20627406 ggtgtctacggccaccttcctggagagctgtggcgtggccgacctgatcac 20627356



 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 60/68 (88%)
 Strand = Plus / Minus

                                                                            
Query: 1111     agcgtgctgatgggggccaacattgccaatgaggtggctgatgagaagttctgtgagaca 1170
                |||||| ||||||| ||||||||||||||||||||||| |  |  |||||||||||||| 
Sbjct: 20644651 agcgtgttgatgggagccaacattgccaatgaggtggccgccggcaagttctgtgagacc 20644592

                        
Query: 1171     accatcgg 1178
                ||||||||
Sbjct: 20644591 accatcgg 20644584


>Sscrofa_Chr01 
||          Length = 315321322

 Score = 79.8 bits (40), Expect = 4e-12
 Identities = 64/72 (88%)
 Strand = Plus / Minus

                                                                            
Query: 1114     gtgctgatgggggccaacattgccaatgaggtggctgatgagaagttctgtgagacaacc 1173
                ||||||||||| |||||||  |||||||||||||||| ||  |||||||||||||| |||
Sbjct: 47688307 gtgctgatgggagccaacacagccaatgaggtggctgctggaaagttctgtgagaccacc 47688248

                            
Query: 1174     atcggctgcaag 1185
                |||||| |||||
Sbjct: 47688247 atcggcagcaag 47688236


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 39,316,656
Number of extensions: 348
Number of successful extensions: 348
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 345
Number of HSP's successfully gapped: 7
Length of query: 1470
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1449
Effective length of database: 2,808,413,156
Effective search space: 4069390663044
Effective search space used: 4069390663044
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)