Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003975
(1051 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001069254.2| limb region 1 protein [Bos taurus]. 252 4e-67
Alignment gi|XP_002687103.1| PREDICTED: limb region 1 homolog (mouse) [Bo... 252 4e-67
Alignment gi|XP_001790128.1| PREDICTED: limb region 1 protein [Bos taurus]. 252 4e-67
>ref|NP_001069254.2| limb region 1 protein [Bos taurus].
Length = 490
Score = 252 bits (643), Expect = 4e-67
Identities = 131/243 (53%), Positives = 160/243 (65%)
Frame = +3
Query: 315 LSVREQLFHERVRECIISTLLFATLYILCHIALTRFKKPAEFTTVDDEDATVNKIALELC 494
+S REQ FH +VRE I L+FA LYI+ + +TR+K+ ++ +DEDA VN+I+L L
Sbjct: 7 VSAREQHFHSQVRESTICFLIFAILYIVSYFIITRYKRKSD--EQEDEDAIVNRISLFLS 64
Query: 495 TFTXXXXXXXXXXXPFSIISNEVLLSLPRNYYIQWLNGSLIHGLWNLVFLFSNLSLIFLM 674
TFT PFSIISNE+LLS P+NYYIQWLNGSLIHGLWNL LFSNL L LM
Sbjct: 65 TFTLAVSAGAVLLLPFSIISNEILLSFPQNYYIQWLNGSLIHGLWNLASLFSNLCLFVLM 124
Query: 675 PFAYFFTESEGFAGSRKGVLARVYEXXXXXXXXXXXXXXXXXXASAIVDNDKASRESLYD 854
PFA+FF ESEGFAG +KG+ AR+ E ASA++DND AS ESLYD
Sbjct: 125 PFAFFFLESEGFAGLKKGIRARILETLVMLILLALLILGIVWVASALIDNDAASMESLYD 184
Query: 855 FWEYYLPYLYSCISFXXXXXXXXXXXXXXARMFSVTGKLLVKPRLLEDLEEQLHCSAFEE 1034
WE+YLPYLYSCIS +RMF+V G+LLVKP +LEDL+EQ++ EE
Sbjct: 185 LWEFYLPYLYSCISLMGCLLLLLCTPVGLSRMFTVMGQLLVKPTILEDLDEQIYIITLEE 244
Query: 1035 AAL 1043
AL
Sbjct: 245 EAL 247
>ref|XP_002687103.1| PREDICTED: limb region 1 homolog (mouse) [Bos taurus].
Length = 490
Score = 252 bits (643), Expect = 4e-67
Identities = 131/243 (53%), Positives = 160/243 (65%)
Frame = +3
Query: 315 LSVREQLFHERVRECIISTLLFATLYILCHIALTRFKKPAEFTTVDDEDATVNKIALELC 494
+S REQ FH +VRE I L+FA LYI+ + +TR+K+ ++ +DEDA VN+I+L L
Sbjct: 7 VSAREQHFHSQVRESTICFLIFAILYIVSYFIITRYKRKSD--EQEDEDAIVNRISLFLS 64
Query: 495 TFTXXXXXXXXXXXPFSIISNEVLLSLPRNYYIQWLNGSLIHGLWNLVFLFSNLSLIFLM 674
TFT PFSIISNE+LLS P+NYYIQWLNGSLIHGLWNL LFSNL L LM
Sbjct: 65 TFTLAVSAGAVLLLPFSIISNEILLSFPQNYYIQWLNGSLIHGLWNLASLFSNLCLFVLM 124
Query: 675 PFAYFFTESEGFAGSRKGVLARVYEXXXXXXXXXXXXXXXXXXASAIVDNDKASRESLYD 854
PFA+FF ESEGFAG +KG+ AR+ E ASA++DND AS ESLYD
Sbjct: 125 PFAFFFLESEGFAGLKKGIRARILETLVMLILLALLILGIVWVASALIDNDAASMESLYD 184
Query: 855 FWEYYLPYLYSCISFXXXXXXXXXXXXXXARMFSVTGKLLVKPRLLEDLEEQLHCSAFEE 1034
WE+YLPYLYSCIS +RMF+V G+LLVKP +LEDL+EQ++ EE
Sbjct: 185 LWEFYLPYLYSCISLMGCLLLLLCTPVGLSRMFTVMGQLLVKPTILEDLDEQIYIITLEE 244
Query: 1035 AAL 1043
AL
Sbjct: 245 EAL 247
>ref|XP_001790128.1| PREDICTED: limb region 1 protein [Bos taurus].
Length = 490
Score = 252 bits (643), Expect = 4e-67
Identities = 131/243 (53%), Positives = 160/243 (65%)
Frame = +3
Query: 315 LSVREQLFHERVRECIISTLLFATLYILCHIALTRFKKPAEFTTVDDEDATVNKIALELC 494
+S REQ FH +VRE I L+FA LYI+ + +TR+K+ ++ +DEDA VN+I+L L
Sbjct: 7 VSAREQHFHSQVRESTICFLIFAILYIVSYFIITRYKRKSD--EQEDEDAIVNRISLFLS 64
Query: 495 TFTXXXXXXXXXXXPFSIISNEVLLSLPRNYYIQWLNGSLIHGLWNLVFLFSNLSLIFLM 674
TFT PFSIISNE+LLS P+NYYIQWLNGSLIHGLWNL LFSNL L LM
Sbjct: 65 TFTLAVSAGAVLLLPFSIISNEILLSFPQNYYIQWLNGSLIHGLWNLASLFSNLCLFVLM 124
Query: 675 PFAYFFTESEGFAGSRKGVLARVYEXXXXXXXXXXXXXXXXXXASAIVDNDKASRESLYD 854
PFA+FF ESEGFAG +KG+ AR+ E ASA++DND AS ESLYD
Sbjct: 125 PFAFFFLESEGFAGLKKGIRARILETLVMLILLALLILGIVWVASALIDNDAASMESLYD 184
Query: 855 FWEYYLPYLYSCISFXXXXXXXXXXXXXXARMFSVTGKLLVKPRLLEDLEEQLHCSAFEE 1034
WE+YLPYLYSCIS +RMF+V G+LLVKP +LEDL+EQ++ EE
Sbjct: 185 LWEFYLPYLYSCISLMGCLLLLLCTPVGLSRMFTVMGQLLVKPTILEDLDEQIYIITLEE 244
Query: 1035 AAL 1043
AL
Sbjct: 245 EAL 247
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 34,551,876
Number of extensions: 881329
Number of successful extensions: 4154
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4108
Number of HSP's successfully gapped: 3
Length of query: 350
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 247
Effective length of database: 14,273,310
Effective search space: 3525507570
Effective search space used: 3525507570
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003975
(1051 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_862715.1| PREDICTED: similar to lipocalin-interacting mem... 395 e-110
Alignment gi|XP_862692.1| PREDICTED: similar to lipocalin-interacting mem... 395 e-110
Alignment gi|XP_862663.1| PREDICTED: similar to lipocalin-interacting mem... 395 e-110
Alignment gi|XP_862638.1| PREDICTED: similar to lipocalin-interacting mem... 395 e-110
Alignment gi|XP_850891.1| PREDICTED: similar to lipocalin-interacting mem... 395 e-110
Alignment gi|XP_539934.2| PREDICTED: similar to limb region 1 protein [Ca... 253 3e-67
>ref|XP_862715.1| PREDICTED: similar to lipocalin-interacting membrane receptor isoform
8 [Canis familiaris].
Length = 489
Score = 395 bits (1015), Expect = e-110
Identities = 205/252 (81%), Positives = 207/252 (82%)
Frame = +3
Query: 291 MEAADYEVLSVREQLFHERVRECIISTLLFATLYILCHIALTRFKKPAEFTTVDDEDATV 470
MEAADYEVLSVREQLFHERVRECIISTLLFATLYILCHIALT FKKPAEFTTVDDEDATV
Sbjct: 1 MEAADYEVLSVREQLFHERVRECIISTLLFATLYILCHIALTHFKKPAEFTTVDDEDATV 60
Query: 471 NKIALELCTFTXXXXXXXXXXXPFSIISNEVLLSLPRNYYIQWLNGSLIHGLWNLVFLFS 650
NKIALELCTFT PFSIISNEVLLSLPRNYYIQWLNGSLIHGLWNLVFLFS
Sbjct: 61 NKIALELCTFTLAVALGAVLLLPFSIISNEVLLSLPRNYYIQWLNGSLIHGLWNLVFLFS 120
Query: 651 NLSLIFLMPFAYFFTESEGFAGSRKGVLARVYEXXXXXXXXXXXXXXXXXXASAIVDNDK 830
NLSLIFLMPFAYFFTESEGFAGSRKGVL RVYE ASAIVDN+K
Sbjct: 121 NLSLIFLMPFAYFFTESEGFAGSRKGVLGRVYETVVMLMLLTLLVLGMVWVASAIVDNNK 180
Query: 831 ASRESLYDFWEYYLPYLYSCISFXXXXXXXXXXXXXXARMFSVTGKLLVKPRLLEDLEEQ 1010
ASRESLYDFWEYYLPYLYSCISF ARMFSVTGKLLVKPRLLEDLEEQ
Sbjct: 181 ASRESLYDFWEYYLPYLYSCISFLGVLLLLVCTPLGLARMFSVTGKLLVKPRLLEDLEEQ 240
Query: 1011 LHCSAFEEAALT 1046
L+CSAFEEAALT
Sbjct: 241 LYCSAFEEAALT 252
>ref|XP_862692.1| PREDICTED: similar to lipocalin-interacting membrane receptor isoform
7 [Canis familiaris].
Length = 469
Score = 395 bits (1015), Expect = e-110
Identities = 205/252 (81%), Positives = 207/252 (82%)
Frame = +3
Query: 291 MEAADYEVLSVREQLFHERVRECIISTLLFATLYILCHIALTRFKKPAEFTTVDDEDATV 470
MEAADYEVLSVREQLFHERVRECIISTLLFATLYILCHIALT FKKPAEFTTVDDEDATV
Sbjct: 1 MEAADYEVLSVREQLFHERVRECIISTLLFATLYILCHIALTHFKKPAEFTTVDDEDATV 60
Query: 471 NKIALELCTFTXXXXXXXXXXXPFSIISNEVLLSLPRNYYIQWLNGSLIHGLWNLVFLFS 650
NKIALELCTFT PFSIISNEVLLSLPRNYYIQWLNGSLIHGLWNLVFLFS
Sbjct: 61 NKIALELCTFTLAVALGAVLLLPFSIISNEVLLSLPRNYYIQWLNGSLIHGLWNLVFLFS 120
Query: 651 NLSLIFLMPFAYFFTESEGFAGSRKGVLARVYEXXXXXXXXXXXXXXXXXXASAIVDNDK 830
NLSLIFLMPFAYFFTESEGFAGSRKGVL RVYE ASAIVDN+K
Sbjct: 121 NLSLIFLMPFAYFFTESEGFAGSRKGVLGRVYETVVMLMLLTLLVLGMVWVASAIVDNNK 180
Query: 831 ASRESLYDFWEYYLPYLYSCISFXXXXXXXXXXXXXXARMFSVTGKLLVKPRLLEDLEEQ 1010
ASRESLYDFWEYYLPYLYSCISF ARMFSVTGKLLVKPRLLEDLEEQ
Sbjct: 181 ASRESLYDFWEYYLPYLYSCISFLGVLLLLVCTPLGLARMFSVTGKLLVKPRLLEDLEEQ 240
Query: 1011 LHCSAFEEAALT 1046
L+CSAFEEAALT
Sbjct: 241 LYCSAFEEAALT 252
>ref|XP_862663.1| PREDICTED: similar to lipocalin-interacting membrane receptor isoform
6 [Canis familiaris].
Length = 491
Score = 395 bits (1015), Expect = e-110
Identities = 205/252 (81%), Positives = 207/252 (82%)
Frame = +3
Query: 291 MEAADYEVLSVREQLFHERVRECIISTLLFATLYILCHIALTRFKKPAEFTTVDDEDATV 470
MEAADYEVLSVREQLFHERVRECIISTLLFATLYILCHIALT FKKPAEFTTVDDEDATV
Sbjct: 1 MEAADYEVLSVREQLFHERVRECIISTLLFATLYILCHIALTHFKKPAEFTTVDDEDATV 60
Query: 471 NKIALELCTFTXXXXXXXXXXXPFSIISNEVLLSLPRNYYIQWLNGSLIHGLWNLVFLFS 650
NKIALELCTFT PFSIISNEVLLSLPRNYYIQWLNGSLIHGLWNLVFLFS
Sbjct: 61 NKIALELCTFTLAVALGAVLLLPFSIISNEVLLSLPRNYYIQWLNGSLIHGLWNLVFLFS 120
Query: 651 NLSLIFLMPFAYFFTESEGFAGSRKGVLARVYEXXXXXXXXXXXXXXXXXXASAIVDNDK 830
NLSLIFLMPFAYFFTESEGFAGSRKGVL RVYE ASAIVDN+K
Sbjct: 121 NLSLIFLMPFAYFFTESEGFAGSRKGVLGRVYETVVMLMLLTLLVLGMVWVASAIVDNNK 180
Query: 831 ASRESLYDFWEYYLPYLYSCISFXXXXXXXXXXXXXXARMFSVTGKLLVKPRLLEDLEEQ 1010
ASRESLYDFWEYYLPYLYSCISF ARMFSVTGKLLVKPRLLEDLEEQ
Sbjct: 181 ASRESLYDFWEYYLPYLYSCISFLGVLLLLVCTPLGLARMFSVTGKLLVKPRLLEDLEEQ 240
Query: 1011 LHCSAFEEAALT 1046
L+CSAFEEAALT
Sbjct: 241 LYCSAFEEAALT 252
>ref|XP_862638.1| PREDICTED: similar to lipocalin-interacting membrane receptor isoform
5 [Canis familiaris].
Length = 366
Score = 395 bits (1015), Expect = e-110
Identities = 205/252 (81%), Positives = 207/252 (82%)
Frame = +3
Query: 291 MEAADYEVLSVREQLFHERVRECIISTLLFATLYILCHIALTRFKKPAEFTTVDDEDATV 470
MEAADYEVLSVREQLFHERVRECIISTLLFATLYILCHIALT FKKPAEFTTVDDEDATV
Sbjct: 1 MEAADYEVLSVREQLFHERVRECIISTLLFATLYILCHIALTHFKKPAEFTTVDDEDATV 60
Query: 471 NKIALELCTFTXXXXXXXXXXXPFSIISNEVLLSLPRNYYIQWLNGSLIHGLWNLVFLFS 650
NKIALELCTFT PFSIISNEVLLSLPRNYYIQWLNGSLIHGLWNLVFLFS
Sbjct: 61 NKIALELCTFTLAVALGAVLLLPFSIISNEVLLSLPRNYYIQWLNGSLIHGLWNLVFLFS 120
Query: 651 NLSLIFLMPFAYFFTESEGFAGSRKGVLARVYEXXXXXXXXXXXXXXXXXXASAIVDNDK 830
NLSLIFLMPFAYFFTESEGFAGSRKGVL RVYE ASAIVDN+K
Sbjct: 121 NLSLIFLMPFAYFFTESEGFAGSRKGVLGRVYETVVMLMLLTLLVLGMVWVASAIVDNNK 180
Query: 831 ASRESLYDFWEYYLPYLYSCISFXXXXXXXXXXXXXXARMFSVTGKLLVKPRLLEDLEEQ 1010
ASRESLYDFWEYYLPYLYSCISF ARMFSVTGKLLVKPRLLEDLEEQ
Sbjct: 181 ASRESLYDFWEYYLPYLYSCISFLGVLLLLVCTPLGLARMFSVTGKLLVKPRLLEDLEEQ 240
Query: 1011 LHCSAFEEAALT 1046
L+CSAFEEAALT
Sbjct: 241 LYCSAFEEAALT 252
>ref|XP_850891.1| PREDICTED: similar to lipocalin-interacting membrane receptor isoform
2 [Canis familiaris].
Length = 489
Score = 395 bits (1015), Expect = e-110
Identities = 205/252 (81%), Positives = 207/252 (82%)
Frame = +3
Query: 291 MEAADYEVLSVREQLFHERVRECIISTLLFATLYILCHIALTRFKKPAEFTTVDDEDATV 470
MEAADYEVLSVREQLFHERVRECIISTLLFATLYILCHIALT FKKPAEFTTVDDEDATV
Sbjct: 1 MEAADYEVLSVREQLFHERVRECIISTLLFATLYILCHIALTHFKKPAEFTTVDDEDATV 60
Query: 471 NKIALELCTFTXXXXXXXXXXXPFSIISNEVLLSLPRNYYIQWLNGSLIHGLWNLVFLFS 650
NKIALELCTFT PFSIISNEVLLSLPRNYYIQWLNGSLIHGLWNLVFLFS
Sbjct: 61 NKIALELCTFTLAVALGAVLLLPFSIISNEVLLSLPRNYYIQWLNGSLIHGLWNLVFLFS 120
Query: 651 NLSLIFLMPFAYFFTESEGFAGSRKGVLARVYEXXXXXXXXXXXXXXXXXXASAIVDNDK 830
NLSLIFLMPFAYFFTESEGFAGSRKGVL RVYE ASAIVDN+K
Sbjct: 121 NLSLIFLMPFAYFFTESEGFAGSRKGVLGRVYETVVMLMLLTLLVLGMVWVASAIVDNNK 180
Query: 831 ASRESLYDFWEYYLPYLYSCISFXXXXXXXXXXXXXXARMFSVTGKLLVKPRLLEDLEEQ 1010
ASRESLYDFWEYYLPYLYSCISF ARMFSVTGKLLVKPRLLEDLEEQ
Sbjct: 181 ASRESLYDFWEYYLPYLYSCISFLGVLLLLVCTPLGLARMFSVTGKLLVKPRLLEDLEEQ 240
Query: 1011 LHCSAFEEAALT 1046
L+CSAFEEAALT
Sbjct: 241 LYCSAFEEAALT 252
>ref|XP_539934.2| PREDICTED: similar to limb region 1 protein [Canis familiaris].
Length = 490
Score = 253 bits (645), Expect = 3e-67
Identities = 132/243 (54%), Positives = 160/243 (65%)
Frame = +3
Query: 315 LSVREQLFHERVRECIISTLLFATLYILCHIALTRFKKPAEFTTVDDEDATVNKIALELC 494
+S REQ FH +VRE I LLFA LYI+ + +TR+K+ ++ +DEDA VN+I+L L
Sbjct: 7 VSAREQHFHSQVRESTICFLLFAILYIVSYFIITRYKRKSD--EQEDEDAIVNRISLFLS 64
Query: 495 TFTXXXXXXXXXXXPFSIISNEVLLSLPRNYYIQWLNGSLIHGLWNLVFLFSNLSLIFLM 674
TFT PFSIISNE+LLS P+NYYIQWLNGSLIHGLWNL LFSNL L LM
Sbjct: 65 TFTLAVSAGAVLLLPFSIISNEILLSFPQNYYIQWLNGSLIHGLWNLASLFSNLCLFVLM 124
Query: 675 PFAYFFTESEGFAGSRKGVLARVYEXXXXXXXXXXXXXXXXXXASAIVDNDKASRESLYD 854
PFA+FF ESEGFAG +KG+ AR+ E ASA++DND AS ESLYD
Sbjct: 125 PFAFFFLESEGFAGLKKGIRARILETVVMLVLLALLILGIVWVASALIDNDAASMESLYD 184
Query: 855 FWEYYLPYLYSCISFXXXXXXXXXXXXXXARMFSVTGKLLVKPRLLEDLEEQLHCSAFEE 1034
WE+YLPYLYSCIS +RMF+V G+LLVKP +LEDL+EQ++ EE
Sbjct: 185 LWEFYLPYLYSCISLMGCLLLLLCTPVGLSRMFTVMGQLLVKPTILEDLDEQIYIITLEE 244
Query: 1035 AAL 1043
AL
Sbjct: 245 EAL 247
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 36,044,568
Number of extensions: 906559
Number of successful extensions: 4311
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 4275
Number of HSP's successfully gapped: 6
Length of query: 350
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 246
Effective length of database: 15,407,560
Effective search space: 3790259760
Effective search space used: 3790259760
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003975
(1051 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_060583.2| protein LMBR1L [Homo sapiens]. 389 e-108
Alignment gi|NP_071903.2| limb region 1 protein homolog [Homo sapiens]. 252 4e-67
>ref|NP_060583.2| protein LMBR1L [Homo sapiens].
Length = 489
Score = 389 bits (999), Expect = e-108
Identities = 201/252 (79%), Positives = 205/252 (81%)
Frame = +3
Query: 291 MEAADYEVLSVREQLFHERVRECIISTLLFATLYILCHIALTRFKKPAEFTTVDDEDATV 470
MEA DYEVLSVREQLFHER+RECIISTLLFATLYILCHI LTRFKKPAEFTTVDDEDATV
Sbjct: 1 MEAPDYEVLSVREQLFHERIRECIISTLLFATLYILCHIFLTRFKKPAEFTTVDDEDATV 60
Query: 471 NKIALELCTFTXXXXXXXXXXXPFSIISNEVLLSLPRNYYIQWLNGSLIHGLWNLVFLFS 650
NKIALELCTFT PFSIISNEVLLSLPRNYYIQWLNGSLIHGLWNLVFLFS
Sbjct: 61 NKIALELCTFTLAIALGAVLLLPFSIISNEVLLSLPRNYYIQWLNGSLIHGLWNLVFLFS 120
Query: 651 NLSLIFLMPFAYFFTESEGFAGSRKGVLARVYEXXXXXXXXXXXXXXXXXXASAIVDNDK 830
NLSLIFLMPFAYFFTESEGFAGSRKGVL RVYE ASAIVD +K
Sbjct: 121 NLSLIFLMPFAYFFTESEGFAGSRKGVLGRVYETVVMLMLLTLLVLGMVWVASAIVDKNK 180
Query: 831 ASRESLYDFWEYYLPYLYSCISFXXXXXXXXXXXXXXARMFSVTGKLLVKPRLLEDLEEQ 1010
A+RESLYDFWEYYLPYLYSCISF ARMFSVTGKLLVKPRLLEDLEEQ
Sbjct: 181 ANRESLYDFWEYYLPYLYSCISFLGVLLLLVCTPLGLARMFSVTGKLLVKPRLLEDLEEQ 240
Query: 1011 LHCSAFEEAALT 1046
L+CSAFEEAALT
Sbjct: 241 LYCSAFEEAALT 252
>ref|NP_071903.2| limb region 1 protein homolog [Homo sapiens].
Length = 490
Score = 252 bits (644), Expect = 4e-67
Identities = 131/243 (53%), Positives = 160/243 (65%)
Frame = +3
Query: 315 LSVREQLFHERVRECIISTLLFATLYILCHIALTRFKKPAEFTTVDDEDATVNKIALELC 494
+S REQ FH +VRE I LLFA LY++ + +TR+K+ ++ +DEDA VN+I+L L
Sbjct: 7 VSAREQHFHSQVRESTICFLLFAILYVVSYFIITRYKRKSD--EQEDEDAIVNRISLFLS 64
Query: 495 TFTXXXXXXXXXXXPFSIISNEVLLSLPRNYYIQWLNGSLIHGLWNLVFLFSNLSLIFLM 674
TFT PFSIISNE+LLS P+NYYIQWLNGSLIHGLWNL LFSNL L LM
Sbjct: 65 TFTLAVSAGAVLLLPFSIISNEILLSFPQNYYIQWLNGSLIHGLWNLASLFSNLCLFVLM 124
Query: 675 PFAYFFTESEGFAGSRKGVLARVYEXXXXXXXXXXXXXXXXXXASAIVDNDKASRESLYD 854
PFA+FF ESEGFAG +KG+ AR+ E ASA++DND AS ESLYD
Sbjct: 125 PFAFFFLESEGFAGLKKGIRARILETLVMLLLLALLILGIVWVASALIDNDAASMESLYD 184
Query: 855 FWEYYLPYLYSCISFXXXXXXXXXXXXXXARMFSVTGKLLVKPRLLEDLEEQLHCSAFEE 1034
WE+YLPYLYSCIS +RMF+V G+LLVKP +LEDL+EQ++ EE
Sbjct: 185 LWEFYLPYLYSCISLMGCLLLLLCTPVGLSRMFTVMGQLLVKPTILEDLDEQIYIITLEE 244
Query: 1035 AAL 1043
AL
Sbjct: 245 EAL 247
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 35,330,462
Number of extensions: 886674
Number of successful extensions: 3882
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3840
Number of HSP's successfully gapped: 2
Length of query: 350
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 247
Effective length of database: 14,901,872
Effective search space: 3680762384
Effective search space used: 3680762384
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003975
(1051 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_083374.1| protein LMBR1L [Mus musculus]. 392 e-109
Alignment gi|NP_064691.2| limb region 1 protein [Mus musculus]. 247 1e-65
>ref|NP_083374.1| protein LMBR1L [Mus musculus].
Length = 489
Score = 392 bits (1008), Expect = e-109
Identities = 203/252 (80%), Positives = 206/252 (81%)
Frame = +3
Query: 291 MEAADYEVLSVREQLFHERVRECIISTLLFATLYILCHIALTRFKKPAEFTTVDDEDATV 470
MEAADYEVLSVREQLFH+RVRECIIS LLFATLYILCHI LTRFKKPAEFTTVDDEDATV
Sbjct: 1 MEAADYEVLSVREQLFHDRVRECIISILLFATLYILCHIFLTRFKKPAEFTTVDDEDATV 60
Query: 471 NKIALELCTFTXXXXXXXXXXXPFSIISNEVLLSLPRNYYIQWLNGSLIHGLWNLVFLFS 650
NKIALELCTFT PFSIISNEVLLSLPRNYYIQWLNGSLIHGLWNLVFLFS
Sbjct: 61 NKIALELCTFTLAVALGAVLLLPFSIISNEVLLSLPRNYYIQWLNGSLIHGLWNLVFLFS 120
Query: 651 NLSLIFLMPFAYFFTESEGFAGSRKGVLARVYEXXXXXXXXXXXXXXXXXXASAIVDNDK 830
NLSL+FLMPFAYFFTESEGFAGSRKGVL RVYE ASAIVDNDK
Sbjct: 121 NLSLVFLMPFAYFFTESEGFAGSRKGVLGRVYETVVMLILLTLLVLGMVWVASAIVDNDK 180
Query: 831 ASRESLYDFWEYYLPYLYSCISFXXXXXXXXXXXXXXARMFSVTGKLLVKPRLLEDLEEQ 1010
ASRESLYDFWEYYLPYLYSCISF ARMFSVTGKLLVKPRLLEDLEEQ
Sbjct: 181 ASRESLYDFWEYYLPYLYSCISFLGVLLLLVCTPLGLARMFSVTGKLLVKPRLLEDLEEQ 240
Query: 1011 LHCSAFEEAALT 1046
L+CSAFEEAALT
Sbjct: 241 LNCSAFEEAALT 252
>ref|NP_064691.2| limb region 1 protein [Mus musculus].
Length = 490
Score = 247 bits (631), Expect = 1e-65
Identities = 129/243 (53%), Positives = 158/243 (65%)
Frame = +3
Query: 315 LSVREQLFHERVRECIISTLLFATLYILCHIALTRFKKPAEFTTVDDEDATVNKIALELC 494
+S REQ FH +VRE I LLFA LYI+ + + R+K+ ++ +DEDA VN+I+L L
Sbjct: 7 VSAREQHFHSQVRESTICFLLFAILYIVSYFIIIRYKRKSD--EQEDEDAVVNRISLFLS 64
Query: 495 TFTXXXXXXXXXXXPFSIISNEVLLSLPRNYYIQWLNGSLIHGLWNLVFLFSNLSLIFLM 674
TFT PFSIISNE+LL+ P NYYIQWLNGSLIHGLWNL LFSNL L LM
Sbjct: 65 TFTLAVSAGAVLLLPFSIISNEILLAFPHNYYIQWLNGSLIHGLWNLASLFSNLCLFVLM 124
Query: 675 PFAYFFTESEGFAGSRKGVLARVYEXXXXXXXXXXXXXXXXXXASAIVDNDKASRESLYD 854
PFA+FF ESEGFAG +KG+ AR+ E ASA++D+D AS ESLYD
Sbjct: 125 PFAFFFLESEGFAGLKKGIRARILETLVMLLLLALLILGMVWVASALIDSDAASMESLYD 184
Query: 855 FWEYYLPYLYSCISFXXXXXXXXXXXXXXARMFSVTGKLLVKPRLLEDLEEQLHCSAFEE 1034
WE+YLPYLYSCIS +RMF+V G+LLVKP +LEDL+EQ++ EE
Sbjct: 185 LWEFYLPYLYSCISLMGCLLLLLCTPVGLSRMFTVMGQLLVKPAILEDLDEQIYMITLEE 244
Query: 1035 AAL 1043
AL
Sbjct: 245 EAL 247
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 29,752,235
Number of extensions: 735806
Number of successful extensions: 3235
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3159
Number of HSP's successfully gapped: 2
Length of query: 350
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 248
Effective length of database: 12,553,887
Effective search space: 3113363976
Effective search space used: 3113363976
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003975
(1051 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003134572.2| PREDICTED: limb region 1 protein homolog [Su... 148 4e-36
>ref|XP_003134572.2| PREDICTED: limb region 1 protein homolog [Sus scrofa].
Length = 520
Score = 148 bits (374), Expect = 4e-36
Identities = 81/142 (57%), Positives = 95/142 (66%)
Frame = +3
Query: 618 HGLWNLVFLFSNLSLIFLMPFAYFFTESEGFAGSRKGVLARVYEXXXXXXXXXXXXXXXX 797
HGLWNL LFSNL L LMPFA+FF ESEGFAG +KG+ AR+ E
Sbjct: 21 HGLWNLASLFSNLCLFVLMPFAFFFLESEGFAGLKKGIRARILETLVMXXXXXXLILGMV 80
Query: 798 XXASAIVDNDKASRESLYDFWEYYLPYLYSCISFXXXXXXXXXXXXXXARMFSVTGKLLV 977
ASA++DND A ESLYD WE+YLPYLYSCIS +RMF+V G+LLV
Sbjct: 81 WVASALIDNDAALMESLYDLWEFYLPYLYSCISLMGCLLLLLCTPVGLSRMFTVMGQLLV 140
Query: 978 KPRLLEDLEEQLHCSAFEEAAL 1043
KP +LEDL+EQ++ EE AL
Sbjct: 141 KPAILEDLDEQIYIITLEEEAL 162
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 22,282,794
Number of extensions: 569964
Number of successful extensions: 2735
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2709
Number of HSP's successfully gapped: 1
Length of query: 350
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 250
Effective length of database: 8,854,232
Effective search space: 2213558000
Effective search space used: 2213558000
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003975
(1051 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr05 718 0.0
gb|GL894864.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 72 7e-10
>Sscrofa_Chr05
|| Length = 111506441
Score = 718 bits (362), Expect = 0.0
Identities = 362/362 (100%)
Strand = Plus / Minus
Query: 1 gtgcttgttggcgggtgtttgcgttgaaacaacactgaagccgaccttaaaggggaggga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15494211 gtgcttgttggcgggtgtttgcgttgaaacaacactgaagccgaccttaaaggggaggga 15494152
Query: 61 acaaagagggggagccggggccctttaaaacaaggcgcgccggtacctgcccctttaagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15494151 acaaagagggggagccggggccctttaaaacaaggcgcgccggtacctgcccctttaagg 15494092
Query: 121 gcggggcggccagaagactgaatctgagccccagattaccccgagtttccgtcacaggct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15494091 gcggggcggccagaagactgaatctgagccccagattaccccgagtttccgtcacaggct 15494032
Query: 181 gcgaggaaaggcttcttcgctgggtccgggtgcttggcggcggcggcttcatccccgctg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15494031 gcgaggaaaggcttcttcgctgggtccgggtgcttggcggcggcggcttcatccccgctg 15493972
Query: 241 gtcctccccgggcccggagacacccccgccccagtcatgctgagcagagtatggaagcag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15493971 gtcctccccgggcccggagacacccccgccccagtcatgctgagcagagtatggaagcag 15493912
Query: 301 ctgattacgaagtgctatccgtgcgagagcagctattccacgagagggtccgcgagtgca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15493911 ctgattacgaagtgctatccgtgcgagagcagctattccacgagagggtccgcgagtgca 15493852
Query: 361 tt 362
||
Sbjct: 15493851 tt 15493850
Score = 280 bits (141), Expect = 1e-72
Identities = 141/141 (100%)
Strand = Plus / Minus
Query: 482 gctcgagctgtgcaccttcaccctggcagtcgctctgggtgctgtcctgctcctgccctt 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15488497 gctcgagctgtgcaccttcaccctggcagtcgctctgggtgctgtcctgctcctgccctt 15488438
Query: 542 ttccatcatcagcaatgaggtgctgctctcactgcctcgaaactactacatccagtggct 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15488437 ttccatcatcagcaatgaggtgctgctctcactgcctcgaaactactacatccagtggct 15488378
Query: 602 caacggctccctcatccatgg 622
|||||||||||||||||||||
Sbjct: 15488377 caacggctccctcatccatgg 15488357
Score = 256 bits (129), Expect = 2e-65
Identities = 129/129 (100%)
Strand = Plus / Minus
Query: 724 agggtgtcctggcccgggtctacgagacggtggtgatgttgattcttctcactctgctgg 783
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15487289 agggtgtcctggcccgggtctacgagacggtggtgatgttgattcttctcactctgctgg 15487230
Query: 784 tgctgggcatggtgtgggtggcatcagccattgtggacaacgacaaggccagcagggagt 843
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15487229 tgctgggcatggtgtgggtggcatcagccattgtggacaacgacaaggccagcagggagt 15487170
Query: 844 ccctctatg 852
|||||||||
Sbjct: 15487169 ccctctatg 15487161
Score = 210 bits (106), Expect = 1e-51
Identities = 106/106 (100%)
Strand = Plus / Minus
Query: 621 ggcctctggaacctggtatttctcttctccaacttgtccctcatcttcctcatgcctttt 680
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15487904 ggcctctggaacctggtatttctcttctccaacttgtccctcatcttcctcatgcctttt 15487845
Query: 681 gcatacttcttcactgagtctgagggcttcgctggctccagaaagg 726
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15487844 gcatacttcttcactgagtctgagggcttcgctggctccagaaagg 15487799
Score = 168 bits (85), Expect = 4e-39
Identities = 85/85 (100%)
Strand = Plus / Minus
Query: 363 atctcaacgcttctgtttgcgacactctacatcctctgccacatcgccctgactcgcttc 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15490786 atctcaacgcttctgtttgcgacactctacatcctctgccacatcgccctgactcgcttc 15490727
Query: 423 aagaagcctgctgagttcaccacag 447
|||||||||||||||||||||||||
Sbjct: 15490726 aagaagcctgctgagttcaccacag 15490702
Score = 139 bits (70), Expect = 3e-30
Identities = 70/70 (100%)
Strand = Plus / Minus
Query: 852 gacttctgggagtactacctcccctacctctactcctgcatctccttccttggggtgctg 911
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15486257 gacttctgggagtactacctcccctacctctactcctgcatctccttccttggggtgctg 15486198
Query: 912 ctcctcctgg 921
||||||||||
Sbjct: 15486197 ctcctcctgg 15486188
Score = 131 bits (66), Expect = 8e-28
Identities = 66/66 (100%)
Strand = Plus / Minus
Query: 921 gtgtgtactccgctaggtctcgcccgcatgttctccgtcactgggaagctgctggtcaag 980
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15486051 gtgtgtactccgctaggtctcgcccgcatgttctccgtcactgggaagctgctggtcaag 15485992
Query: 981 ccccgg 986
||||||
Sbjct: 15485991 ccccgg 15485986
Score = 125 bits (63), Expect = 5e-26
Identities = 66/67 (98%)
Strand = Plus / Minus
Query: 981 ccccggctgctagaggacctggaggagcagctgcactgctcagcctttgaggaggcagct 1040
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15485655 ccccagctgctagaggacctggaggagcagctgcactgctcagcctttgaggaggcagct 15485596
Query: 1041 ttgaccc 1047
|||||||
Sbjct: 15485595 ttgaccc 15485589
Score = 79.8 bits (40), Expect = 3e-12
Identities = 40/40 (100%)
Strand = Plus / Minus
Query: 443 cacagtggatgatgaagatgccacagtcaacaagattgcg 482
||||||||||||||||||||||||||||||||||||||||
Sbjct: 15489563 cacagtggatgatgaagatgccacagtcaacaagattgcg 15489524
>gb|GL894864.1| Sus scrofa unplaced genomic scaffold chrU_scaffold3487
Length = 61664
Score = 71.9 bits (36), Expect = 7e-10
Identities = 75/88 (85%)
Strand = Plus / Plus
Query: 535 tgcccttttccatcatcagcaatgaggtgctgctctcactgcctcgaaactactacatcc 594
|||||||||| || |||||||||||| | |||||||| | || | |||||||||||||
Sbjct: 55773 tgcccttttcaataatcagcaatgagatcctgctctcctttccgcagaactactacatcc 55832
Query: 595 agtggctcaacggctccctcatccatgg 622
||||||| || |||||||| ||||||||
Sbjct: 55833 agtggctgaatggctccctgatccatgg 55860
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 27,434,016
Number of extensions: 227
Number of successful extensions: 227
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 226
Number of HSP's successfully gapped: 10
Length of query: 1051
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1030
Effective length of database: 2,808,413,156
Effective search space: 2892665550680
Effective search space used: 2892665550680
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)