Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003983
(1432 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002694329.1| PREDICTED: hypothetical protein [Bos taurus]. 476 e-134
Alignment gi|XP_612376.3| PREDICTED: hypothetical protein [Bos taurus]. 476 e-134
>ref|XP_002694329.1| PREDICTED: hypothetical protein [Bos taurus].
Length = 3079
Score = 476 bits (1225), Expect = e-134
Identities = 251/342 (73%), Positives = 273/342 (79%), Gaps = 1/342 (0%)
Frame = +3
Query: 45 SQMENLKYADKLKKENDRAQGKIKLLIKSCXXXXXXXXXXXXXXSRLEGVQEKQKTGTVV 224
++MENLK+ADKLKKENDRAQ KIKLL+KSC S LE QEKQ+ TVV
Sbjct: 2738 TKMENLKHADKLKKENDRAQSKIKLLVKSCKQLEEEKVMLQKELSHLEAAQEKQRADTVV 2797
Query: 225 DASVDXXXXXXXXXXXXXXXXXXXADEYLDKYCSLLISHEKLEKAKEMLETQVARLSAQQ 404
DA+VD ADEYLDKYCSLLISHEKLEKAKEMLETQVARLS+QQ
Sbjct: 2798 DANVDELITEMKELKETLEEKTKEADEYLDKYCSLLISHEKLEKAKEMLETQVARLSSQQ 2857
Query: 405 SKLNLRSSPLLSSAVPGPSPDPSTTEKKLSSSQNKASGKRQRSSGIREDG-ETTPSTPET 581
SKLNLR SPL++S PGPSP PS TEKKL S QNK+SGKRQRSSGIREDG ETTPSTPET
Sbjct: 2858 SKLNLRRSPLVNSLAPGPSPVPSATEKKLPSGQNKSSGKRQRSSGIREDGGETTPSTPET 2917
Query: 582 FSKKSKKAVKSGFHPTEDLEDAECEPEGLPEVVKKGFADIPTGKTSPYVLRRTTMATRTS 761
FSKKS+KA++SG H ED EDAE EPEGLPEVVKKGFADIPTGKTSPY+LRRTTMATRTS
Sbjct: 2918 FSKKSRKAIRSGTHLAEDAEDAEFEPEGLPEVVKKGFADIPTGKTSPYILRRTTMATRTS 2977
Query: 762 PRLAAQKLAPSPLSLNKENLAETSKPTAGGSRSQKVKVTPQSPVDSGAALREPTARSLSV 941
PRLAAQKLA SP SL+KENL ETSKPTAGGSRSQKVKV+ QSPVDSG A R+P RSLS+
Sbjct: 2978 PRLAAQKLAASPPSLDKENLTETSKPTAGGSRSQKVKVSQQSPVDSGTAFRDPIGRSLSI 3037
Query: 942 TNLPERSSADSPHEGLRAKRGRLVPSPEAGPQAKESENCRVQ 1067
+NLPERS SP EGLRAKRGR PSPE+ ++K SENCRVQ
Sbjct: 3038 SNLPERSPVGSPREGLRAKRGRHAPSPESSLESKGSENCRVQ 3079
>ref|XP_612376.3| PREDICTED: hypothetical protein [Bos taurus].
Length = 3079
Score = 476 bits (1225), Expect = e-134
Identities = 251/342 (73%), Positives = 273/342 (79%), Gaps = 1/342 (0%)
Frame = +3
Query: 45 SQMENLKYADKLKKENDRAQGKIKLLIKSCXXXXXXXXXXXXXXSRLEGVQEKQKTGTVV 224
++MENLK+ADKLKKENDRAQ KIKLL+KSC S LE QEKQ+ TVV
Sbjct: 2738 TKMENLKHADKLKKENDRAQSKIKLLVKSCKQLEEEKVMLQKELSHLEAAQEKQRADTVV 2797
Query: 225 DASVDXXXXXXXXXXXXXXXXXXXADEYLDKYCSLLISHEKLEKAKEMLETQVARLSAQQ 404
DA+VD ADEYLDKYCSLLISHEKLEKAKEMLETQVARLS+QQ
Sbjct: 2798 DANVDELITEMKELKETLEEKTKEADEYLDKYCSLLISHEKLEKAKEMLETQVARLSSQQ 2857
Query: 405 SKLNLRSSPLLSSAVPGPSPDPSTTEKKLSSSQNKASGKRQRSSGIREDG-ETTPSTPET 581
SKLNLR SPL++S PGPSP PS TEKKL S QNK+SGKRQRSSGIREDG ETTPSTPET
Sbjct: 2858 SKLNLRRSPLVNSLAPGPSPVPSATEKKLPSGQNKSSGKRQRSSGIREDGGETTPSTPET 2917
Query: 582 FSKKSKKAVKSGFHPTEDLEDAECEPEGLPEVVKKGFADIPTGKTSPYVLRRTTMATRTS 761
FSKKS+KA++SG H ED EDAE EPEGLPEVVKKGFADIPTGKTSPY+LRRTTMATRTS
Sbjct: 2918 FSKKSRKAIRSGTHLAEDAEDAEFEPEGLPEVVKKGFADIPTGKTSPYILRRTTMATRTS 2977
Query: 762 PRLAAQKLAPSPLSLNKENLAETSKPTAGGSRSQKVKVTPQSPVDSGAALREPTARSLSV 941
PRLAAQKLA SP SL+KENL ETSKPTAGGSRSQKVKV+ QSPVDSG A R+P RSLS+
Sbjct: 2978 PRLAAQKLAASPPSLDKENLTETSKPTAGGSRSQKVKVSQQSPVDSGTAFRDPIGRSLSI 3037
Query: 942 TNLPERSSADSPHEGLRAKRGRLVPSPEAGPQAKESENCRVQ 1067
+NLPERS SP EGLRAKRGR PSPE+ ++K SENCRVQ
Sbjct: 3038 SNLPERSPVGSPREGLRAKRGRHAPSPESSLESKGSENCRVQ 3079
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 52,901,264
Number of extensions: 1430536
Number of successful extensions: 5964
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5888
Number of HSP's successfully gapped: 2
Length of query: 477
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 371
Effective length of database: 14,174,046
Effective search space: 5258571066
Effective search space used: 5258571066
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003983
(1432 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_537150.2| PREDICTED: similar to CENP-F kinetochore protei... 376 e-104
>ref|XP_537150.2| PREDICTED: similar to CENP-F kinetochore protein (Centromere protein
F) (Mitosin) (AH antigen) [Canis familiaris].
Length = 565
Score = 376 bits (965), Expect = e-104
Identities = 226/400 (56%), Positives = 258/400 (64%), Gaps = 59/400 (14%)
Frame = +3
Query: 45 SQMENLKYADKLKKENDRAQGKIKLLIKSCXXXXXXXXXXXXXXSRLEGVQEKQKTGTVV 224
++ +++KY ++LKKEN+RAQGKIKLLIKSC S LE QE QKTGTVV
Sbjct: 167 TKADHVKYTNQLKKENERAQGKIKLLIKSCKQLEEEKEMLQKELSHLEATQENQKTGTVV 226
Query: 225 DASVDXXXXXXXXXXXXXXXXXXXADEYLDKYCSLLISHEKLEKAKEMLETQVARLSAQQ 404
D++ + ADEYLDKYCSLLISHEKLEKAKEMLETQVARLS+ +
Sbjct: 227 DSNAEELMAEMKELKETLEEKTKEADEYLDKYCSLLISHEKLEKAKEMLETQVARLSS-R 285
Query: 405 SKLNLRSSPLLSSAVPGPSPDPSTTEKKLSSSQNKASGKRQRSSGIRED-GETTPSTPET 581
SK +L++SPLL+S VP S PS TEKKLSS QN ASGKRQRS+GIRED G T STPET
Sbjct: 286 SKPHLQNSPLLNSVVPEASLAPSATEKKLSSGQNTASGKRQRSTGIREDGGGTASSTPET 345
Query: 582 FSKKSKKAVKSGFHPTEDLEDAECEPEGLPEVVKKGFADIPTGKTSPYVLRRTTMATRTS 761
FSKKS+KAV+SG HP E+ +D E EPEGLPEVVKKGFADIPTGKTSPYVLRRTTM TRTS
Sbjct: 346 FSKKSRKAVRSGIHPAEEAKDTEFEPEGLPEVVKKGFADIPTGKTSPYVLRRTTMPTRTS 405
Query: 762 PRLAAQKLAPSPLSLNKENLAETSKPTAGGSRSQKV--------------KVTPQSPVDS 899
PRLAAQKLA SPLSLNKEN AETS+PTAGGSRSQKV V P D+
Sbjct: 406 PRLAAQKLALSPLSLNKENHAETSQPTAGGSRSQKVTPMNLYPAFQIQEMTVLPGQGFDT 465
Query: 900 G----------AALREPTARSLSVT------------NLPERSSADS------------- 974
+L+ T+ S T + ++S ADS
Sbjct: 466 APFSMQHKGVEESLQGDTSEFRSDTLLASVRSEEEMVKVAQQSPADSSTAFREPTTRVSS 525
Query: 975 ---------PHEGLRAKRGRLVPSPEAGPQAKESENCRVQ 1067
P EGLRAKR RL PSPEA P++K SENCRVQ
Sbjct: 526 LPERSSADSPREGLRAKRSRLAPSPEAVPESKSSENCRVQ 565
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 55,188,129
Number of extensions: 1471827
Number of successful extensions: 6031
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5966
Number of HSP's successfully gapped: 2
Length of query: 477
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 370
Effective length of database: 15,307,552
Effective search space: 5663794240
Effective search space used: 5663794240
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003983
(1432 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_057427.3| centromere protein F [Homo sapiens]. 458 e-129
>ref|NP_057427.3| centromere protein F [Homo sapiens].
Length = 3114
Score = 458 bits (1178), Expect = e-129
Identities = 241/342 (70%), Positives = 266/342 (77%), Gaps = 1/342 (0%)
Frame = +3
Query: 45 SQMENLKYADKLKKENDRAQGKIKLLIKSCXXXXXXXXXXXXXXSRLEGVQEKQKTGTVV 224
++M+NLKY ++LKKEN+RAQGK+KLLIKSC S+L+ QEKQKTGTV+
Sbjct: 2773 TKMDNLKYVNQLKKENERAQGKMKLLIKSCKQLEEEKEILQKELSQLQAAQEKQKTGTVM 2832
Query: 225 DASVDXXXXXXXXXXXXXXXXXXXADEYLDKYCSLLISHEKLEKAKEMLETQVARLSAQQ 404
D VD ADEYLDKYCSLLISHEKLEKAKEMLETQVA L +QQ
Sbjct: 2833 DTKVDELTTEIKELKETLEEKTKEADEYLDKYCSLLISHEKLEKAKEMLETQVAHLCSQQ 2892
Query: 405 SKLNLRSSPLLSSAVPGPSPDPSTTEKKLSSSQNKASGKRQRSSGIREDGE-TTPSTPET 581
SK + R SPLL VPGPSP PS TEK+LSS QNKASGKRQRSSGI E+G TP+TPE+
Sbjct: 2893 SKQDSRGSPLLGPVVPGPSPIPSVTEKRLSSGQNKASGKRQRSSGIWENGRGPTPATPES 2952
Query: 582 FSKKSKKAVKSGFHPTEDLEDAECEPEGLPEVVKKGFADIPTGKTSPYVLRRTTMATRTS 761
FSKKSKKAV SG HP ED E E EPEGLPEVVKKGFADIPTGKTSPY+LRRTTMATRTS
Sbjct: 2953 FSKKSKKAVMSGIHPAEDTEGTEFEPEGLPEVVKKGFADIPTGKTSPYILRRTTMATRTS 3012
Query: 762 PRLAAQKLAPSPLSLNKENLAETSKPTAGGSRSQKVKVTPQSPVDSGAALREPTARSLSV 941
PRLAAQKLA SPLSL KENLAE+SKPTAGGSRSQKVKV +SPVDSG LREPT +S+ V
Sbjct: 3013 PRLAAQKLALSPLSLGKENLAESSKPTAGGSRSQKVKVAQRSPVDSGTILREPTTKSVPV 3072
Query: 942 TNLPERSSADSPHEGLRAKRGRLVPSPEAGPQAKESENCRVQ 1067
NLPERS DSP EGLR KRGRLVPSP+AG ++ SENC+VQ
Sbjct: 3073 NNLPERSPTDSPREGLRVKRGRLVPSPKAGLESNGSENCKVQ 3114
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 54,193,848
Number of extensions: 1454128
Number of successful extensions: 5952
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5855
Number of HSP's successfully gapped: 1
Length of query: 477
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 371
Effective length of database: 14,802,980
Effective search space: 5491905580
Effective search space used: 5491905580
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003983
(1432 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001074832.2| centromere protein F [Mus musculus]. 365 e-101
>ref|NP_001074832.2| centromere protein F [Mus musculus].
Length = 2997
Score = 365 bits (936), Expect = e-101
Identities = 196/338 (57%), Positives = 241/338 (71%), Gaps = 1/338 (0%)
Frame = +3
Query: 57 NLKYADKLKKENDRAQGKIKLLIKSCXXXXXXXXXXXXXXSRLEGVQEKQKTGTVVDASV 236
+LK ++L+KE RAQGKIKL++KSC S+LE Q+ Q+ G++VD++V
Sbjct: 2661 HLKSVNQLEKELQRAQGKIKLMLKSCRQLEGEKEMLQKELSQLEAAQQ-QRAGSLVDSNV 2719
Query: 237 DXXXXXXXXXXXXXXXXXXXADEYLDKYCSLLISHEKLEKAKEMLETQVARLSAQQSKLN 416
D AD+YLDKYCSLLISHE+LEKAKE+LE +VARL ++QS+ +
Sbjct: 2720 DEVMTENKALKETLEEKVKEADKYLDKYCSLLISHEELEKAKEILEIEVARLKSRQSRQD 2779
Query: 417 LRSSPLLSSAVPGPSPDPSTTEKKLSSSQNKASGKRQRSSGIREDGE-TTPSTPETFSKK 593
L+SSPLL+S++PGPSP+ S +E K +S QNKASGKRQRSSGI E G+ PST ETFSKK
Sbjct: 2780 LQSSPLLNSSIPGPSPNTSVSEMKSASGQNKASGKRQRSSGIWEHGKRAAPSTAETFSKK 2839
Query: 594 SKKAVKSGFHPTEDLEDAECEPEGLPEVVKKGFADIPTGKTSPYVLRRTTMATRTSPRLA 773
S+K+ P E ++ E EPEGLPEVVKKGFADIPTGKTSPY+LRRTTMATRTSPR A
Sbjct: 2840 SRKSDSKSTRPAEHEQETEFEPEGLPEVVKKGFADIPTGKTSPYILRRTTMATRTSPRFA 2899
Query: 774 AQKLAPSPLSLNKENLAETSKPTAGGSRSQKVKVTPQSPVDSGAALREPTARSLSVTNLP 953
QKL S SL KEN+ E+SKPTAGGSRSQKVKV +S DS A +E A+SL+ +N+P
Sbjct: 2900 TQKLVGSSPSLGKENVVESSKPTAGGSRSQKVKVVQESSADSHTAFQELPAKSLTASNIP 2959
Query: 954 ERSSADSPHEGLRAKRGRLVPSPEAGPQAKESENCRVQ 1067
R+S +SP EGLRAKR SP AGP +ENCRVQ
Sbjct: 2960 GRNSTESPREGLRAKRAYPASSPAAGPDPTNNENCRVQ 2997
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 45,999,496
Number of extensions: 1220826
Number of successful extensions: 5021
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4959
Number of HSP's successfully gapped: 1
Length of query: 477
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 372
Effective length of database: 12,463,779
Effective search space: 4636525788
Effective search space used: 4636525788
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003983
(1432 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003130443.2| PREDICTED: centromere protein F, partial [Su... 454 e-128
>ref|XP_003130443.2| PREDICTED: centromere protein F, partial [Sus scrofa].
Length = 3003
Score = 454 bits (1168), Expect = e-128
Identities = 239/274 (87%), Positives = 241/274 (87%)
Frame = +3
Query: 45 SQMENLKYADKLKKENDRAQGKIKLLIKSCXXXXXXXXXXXXXXSRLEGVQEKQKTGTVV 224
++MENLKYADKLKKENDRAQGKIKLLIKSC SRLEGVQEKQKTGTVV
Sbjct: 2730 TKMENLKYADKLKKENDRAQGKIKLLIKSCKQLEEEKEMLQKELSRLEGVQEKQKTGTVV 2789
Query: 225 DASVDXXXXXXXXXXXXXXXXXXXADEYLDKYCSLLISHEKLEKAKEMLETQVARLSAQQ 404
DASVD ADEYLDKYCSLLISHEKLEKAKEMLETQVARLSAQQ
Sbjct: 2790 DASVDELMIEMKELKETLEEKNKEADEYLDKYCSLLISHEKLEKAKEMLETQVARLSAQQ 2849
Query: 405 SKLNLRSSPLLSSAVPGPSPDPSTTEKKLSSSQNKASGKRQRSSGIREDGETTPSTPETF 584
SKLNLRSSPLLSSAVPGPSPDPSTTEKKLSSSQNKASGKRQRSSGIREDGETTPSTPETF
Sbjct: 2850 SKLNLRSSPLLSSAVPGPSPDPSTTEKKLSSSQNKASGKRQRSSGIREDGETTPSTPETF 2909
Query: 585 SKKSKKAVKSGFHPTEDLEDAECEPEGLPEVVKKGFADIPTGKTSPYVLRRTTMATRTSP 764
SKKSKKAVKSGFHPTEDLEDAECEPEGLPEVVKKGFADIPTGKTSPYVLRRTTMATRTSP
Sbjct: 2910 SKKSKKAVKSGFHPTEDLEDAECEPEGLPEVVKKGFADIPTGKTSPYVLRRTTMATRTSP 2969
Query: 765 RLAAQKLAPSPLSLNKENLAETSKPTAGGSRSQK 866
RLAAQKLAPSPLSLNKENLAETSKPTAGGSRSQK
Sbjct: 2970 RLAAQKLAPSPLSLNKENLAETSKPTAGGSRSQK 3003
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 34,080,791
Number of extensions: 919230
Number of successful extensions: 4009
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3970
Number of HSP's successfully gapped: 1
Length of query: 477
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 374
Effective length of database: 8,779,541
Effective search space: 3283548334
Effective search space used: 3283548334
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003983
(1432 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr09 983 0.0
>Sscrofa_Chr09
|| Length = 153670197
Score = 983 bits (496), Expect = 0.0
Identities = 546/568 (96%)
Strand = Plus / Minus
Query: 865 aggtcaaggtgactccgcagagccccgtggattcaggcgctgccctccgagaacccactg 924
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141676879 aggtcaaggtgactccgcagagccccgtggattcaggcgctgccctccgagaacccactg 141676820
Query: 925 ccagatctctctccgtcactaaccttcctgagagaagttcggctgacagcccccatgagg 984
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141676819 ccagatctctctccatcactaaccttcctgagagaagttcggctgacagcccccatgagg 141676760
Query: 985 gcctgagggccaagcgaggccggctggtccctagcccagaagctggcccccaggccaagg 1044
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141676759 gcctgagggccaagcgaggccggctggtccctagcccagaagctggcccccaggccaagg 141676700
Query: 1045 agagtgagaactgtagggtccagtagaagagccctgtgtgtcagcagccctgcagtgctg 1104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141676699 agagtgagaactgtagggtccagtagaagagccctgtgtgtcagcagccctgcagtgctg 141676640
Query: 1105 aacagagggcagtgtgtctgcgaggctctcttgctggggagcacactgtcagagggagga 1164
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141676639 aacagaaggcagtgtgtctgcgaggctctcttgctggggagcacactgtcagagggagga 141676580
Query: 1165 aaaccattccttataaatctaaatggaccagactctttagatttctcctcagcattagac 1224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141676579 aaaccattccttataaatctaaatggaccagactctttagatttctcctcagcattagac 141676520
Query: 1225 aaatttggaagcactgattacctcttcacagacattcctctcctcttatgtagagtagtt 1284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141676519 aaatttggaagcactgattacctcttcacagacattcctctcctcttatgtagagtagtt 141676460
Query: 1285 ctgtataaacctttttggtaatgttacacggaaatgggcagcactatataacacttctat 1344
||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 141676459 ctgtataaatctttttggtaatgttacacggaaatggcaagcactatataacacttctat 141676400
Query: 1345 ttgtatgtggatattacactnnnnnnncgcaaaacannnnnnnnncccacttgaacagct 1404
|||||||||||||||||||| |||||||| |||||||||||||||
Sbjct: 141676399 ttgtatgtggatattacacttaaaaaatgcaaaacatttttttttcccacttgaacagct 141676340
Query: 1405 cccaggaaaatgtaaacttttgcgttac 1432
||||||||||||||||||||||||||||
Sbjct: 141676339 cccaggaaaatgtaaacttttgcgttac 141676312
Score = 858 bits (433), Expect = 0.0
Identities = 464/479 (96%)
Strand = Plus / Minus
Query: 210 acaggcactgtcgtggacgccagcgtcgatgaattaatgatcgagatgaaagaactgaaa 269
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141683793 acaggcactgtcgtggacgccagcgtcgatgaattaatgatcgagatgaaagaactgaaa 141683734
Query: 270 gaaactcttgaagnnnnnnncaaggaggcagacgaatacctggataaatactgttccctg 329
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 141683733 gaaactcttgaagaaaaaaacaaggaggcagacgaatacctggataaatactgttccctg 141683674
Query: 330 cttataagccatgagaagttagagaaagccaaagagatgttagaaacacaagttgctcgt 389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141683673 cttataagccatgagaagttagagaaagccaaagagatgttagaaacacaagttgctcgt 141683614
Query: 390 ctgagcgcacaacagtctaaacttaatcttcgaagctctcctttgctgagttcagctgtt 449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141683613 ctgagcgcacaacagtctaaacttaatcttcgaagctctcctttgctgagttcagctgtt 141683554
Query: 450 ccaggaccatccccagacccttctactactgaaaagaaattatcatccagccaaaataaa 509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141683553 ccaggaccatccccagacccttctactactgaaaagaaattatcatccagccaaaataaa 141683494
Query: 510 gcttcaggcaaaaggcaaaggtccagtgggattcgggaggatggagaaaccacgccttct 569
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 141683493 gcttcaggcaaaaggcaaaggtccagtgggattcgggaggatggagaaaccacaccttct 141683434
Query: 570 acgccagagacgttttctnnnnnnngcaagaaagctgtcaaaagtggttttcaccccaca 629
|||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 141683433 acgccagagacgttttctaaaaaaagcaagaaagctgtcaaaagtggttttcaccccaca 141683374
Query: 630 gaggatttagaagacgctgagtgtgagccagagggacttccggaagttgtaaagaaagg 688
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141683373 gaggatttagaagacgctgagtgtgagccagagggacttccggaagttgtaaagaaagg 141683315
Score = 363 bits (183), Expect = 2e-97
Identities = 183/183 (100%)
Strand = Plus / Minus
Query: 686 agggtttgctgatatcccaacaggaaagaccagcccatatgtcctgcggagaaccaccat 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141681876 agggtttgctgatatcccaacaggaaagaccagcccatatgtcctgcggagaaccaccat 141681817
Query: 746 ggccacaaggaccagcccccgccttgctgcgcagaagttagcaccatctcccctaagtct 805
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141681816 ggccacaaggaccagcccccgccttgctgcgcagaagttagcaccatctcccctaagtct 141681757
Query: 806 caacaaagaaaatcttgctgagacctccaaaccaacagctggtggcagcagatcacaaaa 865
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141681756 caacaaagaaaatcttgctgagacctccaaaccaacagctggtggcagcagatcacaaaa 141681697
Query: 866 ggt 868
|||
Sbjct: 141681696 ggt 141681694
Score = 329 bits (166), Expect = 2e-87
Identities = 166/166 (100%)
Strand = Plus / Minus
Query: 49 agatggaaaacctgaaatatgcagataagctgaaaaaggagaatgatcgtgcccagggga 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141685169 agatggaaaacctgaaatatgcagataagctgaaaaaggagaatgatcgtgcccagggga 141685110
Query: 109 aaataaagttgttgatcaaatcctgtaaacagctggaagaggaaaaggagatgttgcaga 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141685109 aaataaagttgttgatcaaatcctgtaaacagctggaagaggaaaaggagatgttgcaga 141685050
Query: 169 aagaactctctcgtcttgagggcgtccaggagaaacagaagacagg 214
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141685049 aagaactctctcgtcttgagggcgtccaggagaaacagaagacagg 141685004
Score = 99.6 bits (50), Expect = 4e-18
Identities = 50/50 (100%)
Strand = Plus / Minus
Query: 1 tgtttggccaccaagaatatgtccagggatcctcagttcccacctcccag 50
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141685794 tgtttggccaccaagaatatgtccagggatcctcagttcccacctcccag 141685745
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 45,375,816
Number of extensions: 273
Number of successful extensions: 273
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 271
Number of HSP's successfully gapped: 6
Length of query: 1432
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1411
Effective length of database: 2,808,413,156
Effective search space: 3962670963116
Effective search space used: 3962670963116
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)