Animal-Genome cDNA 20110601C-003983


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-003983
         (1432 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_002694329.1| PREDICTED: hypothetical protein [Bos taurus].     476   e-134
Alignment   gi|XP_612376.3| PREDICTED: hypothetical protein [Bos taurus].        476   e-134

>ref|XP_002694329.1| PREDICTED: hypothetical protein [Bos taurus].
          Length = 3079

 Score =  476 bits (1225), Expect = e-134
 Identities = 251/342 (73%), Positives = 273/342 (79%), Gaps = 1/342 (0%)
 Frame = +3

Query: 45   SQMENLKYADKLKKENDRAQGKIKLLIKSCXXXXXXXXXXXXXXSRLEGVQEKQKTGTVV 224
            ++MENLK+ADKLKKENDRAQ KIKLL+KSC              S LE  QEKQ+  TVV
Sbjct: 2738 TKMENLKHADKLKKENDRAQSKIKLLVKSCKQLEEEKVMLQKELSHLEAAQEKQRADTVV 2797

Query: 225  DASVDXXXXXXXXXXXXXXXXXXXADEYLDKYCSLLISHEKLEKAKEMLETQVARLSAQQ 404
            DA+VD                   ADEYLDKYCSLLISHEKLEKAKEMLETQVARLS+QQ
Sbjct: 2798 DANVDELITEMKELKETLEEKTKEADEYLDKYCSLLISHEKLEKAKEMLETQVARLSSQQ 2857

Query: 405  SKLNLRSSPLLSSAVPGPSPDPSTTEKKLSSSQNKASGKRQRSSGIREDG-ETTPSTPET 581
            SKLNLR SPL++S  PGPSP PS TEKKL S QNK+SGKRQRSSGIREDG ETTPSTPET
Sbjct: 2858 SKLNLRRSPLVNSLAPGPSPVPSATEKKLPSGQNKSSGKRQRSSGIREDGGETTPSTPET 2917

Query: 582  FSKKSKKAVKSGFHPTEDLEDAECEPEGLPEVVKKGFADIPTGKTSPYVLRRTTMATRTS 761
            FSKKS+KA++SG H  ED EDAE EPEGLPEVVKKGFADIPTGKTSPY+LRRTTMATRTS
Sbjct: 2918 FSKKSRKAIRSGTHLAEDAEDAEFEPEGLPEVVKKGFADIPTGKTSPYILRRTTMATRTS 2977

Query: 762  PRLAAQKLAPSPLSLNKENLAETSKPTAGGSRSQKVKVTPQSPVDSGAALREPTARSLSV 941
            PRLAAQKLA SP SL+KENL ETSKPTAGGSRSQKVKV+ QSPVDSG A R+P  RSLS+
Sbjct: 2978 PRLAAQKLAASPPSLDKENLTETSKPTAGGSRSQKVKVSQQSPVDSGTAFRDPIGRSLSI 3037

Query: 942  TNLPERSSADSPHEGLRAKRGRLVPSPEAGPQAKESENCRVQ 1067
            +NLPERS   SP EGLRAKRGR  PSPE+  ++K SENCRVQ
Sbjct: 3038 SNLPERSPVGSPREGLRAKRGRHAPSPESSLESKGSENCRVQ 3079


>ref|XP_612376.3| PREDICTED: hypothetical protein [Bos taurus].
          Length = 3079

 Score =  476 bits (1225), Expect = e-134
 Identities = 251/342 (73%), Positives = 273/342 (79%), Gaps = 1/342 (0%)
 Frame = +3

Query: 45   SQMENLKYADKLKKENDRAQGKIKLLIKSCXXXXXXXXXXXXXXSRLEGVQEKQKTGTVV 224
            ++MENLK+ADKLKKENDRAQ KIKLL+KSC              S LE  QEKQ+  TVV
Sbjct: 2738 TKMENLKHADKLKKENDRAQSKIKLLVKSCKQLEEEKVMLQKELSHLEAAQEKQRADTVV 2797

Query: 225  DASVDXXXXXXXXXXXXXXXXXXXADEYLDKYCSLLISHEKLEKAKEMLETQVARLSAQQ 404
            DA+VD                   ADEYLDKYCSLLISHEKLEKAKEMLETQVARLS+QQ
Sbjct: 2798 DANVDELITEMKELKETLEEKTKEADEYLDKYCSLLISHEKLEKAKEMLETQVARLSSQQ 2857

Query: 405  SKLNLRSSPLLSSAVPGPSPDPSTTEKKLSSSQNKASGKRQRSSGIREDG-ETTPSTPET 581
            SKLNLR SPL++S  PGPSP PS TEKKL S QNK+SGKRQRSSGIREDG ETTPSTPET
Sbjct: 2858 SKLNLRRSPLVNSLAPGPSPVPSATEKKLPSGQNKSSGKRQRSSGIREDGGETTPSTPET 2917

Query: 582  FSKKSKKAVKSGFHPTEDLEDAECEPEGLPEVVKKGFADIPTGKTSPYVLRRTTMATRTS 761
            FSKKS+KA++SG H  ED EDAE EPEGLPEVVKKGFADIPTGKTSPY+LRRTTMATRTS
Sbjct: 2918 FSKKSRKAIRSGTHLAEDAEDAEFEPEGLPEVVKKGFADIPTGKTSPYILRRTTMATRTS 2977

Query: 762  PRLAAQKLAPSPLSLNKENLAETSKPTAGGSRSQKVKVTPQSPVDSGAALREPTARSLSV 941
            PRLAAQKLA SP SL+KENL ETSKPTAGGSRSQKVKV+ QSPVDSG A R+P  RSLS+
Sbjct: 2978 PRLAAQKLAASPPSLDKENLTETSKPTAGGSRSQKVKVSQQSPVDSGTAFRDPIGRSLSI 3037

Query: 942  TNLPERSSADSPHEGLRAKRGRLVPSPEAGPQAKESENCRVQ 1067
            +NLPERS   SP EGLRAKRGR  PSPE+  ++K SENCRVQ
Sbjct: 3038 SNLPERSPVGSPREGLRAKRGRHAPSPESSLESKGSENCRVQ 3079


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 52,901,264
Number of extensions: 1430536
Number of successful extensions: 5964
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5888
Number of HSP's successfully gapped: 2
Length of query: 477
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 371
Effective length of database: 14,174,046
Effective search space: 5258571066
Effective search space used: 5258571066
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-003983
         (1432 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_537150.2| PREDICTED: similar to CENP-F kinetochore protei...   376   e-104

>ref|XP_537150.2| PREDICTED: similar to CENP-F kinetochore protein (Centromere protein
            F) (Mitosin) (AH antigen) [Canis familiaris].
          Length = 565

 Score =  376 bits (965), Expect = e-104
 Identities = 226/400 (56%), Positives = 258/400 (64%), Gaps = 59/400 (14%)
 Frame = +3

Query: 45   SQMENLKYADKLKKENDRAQGKIKLLIKSCXXXXXXXXXXXXXXSRLEGVQEKQKTGTVV 224
            ++ +++KY ++LKKEN+RAQGKIKLLIKSC              S LE  QE QKTGTVV
Sbjct: 167  TKADHVKYTNQLKKENERAQGKIKLLIKSCKQLEEEKEMLQKELSHLEATQENQKTGTVV 226

Query: 225  DASVDXXXXXXXXXXXXXXXXXXXADEYLDKYCSLLISHEKLEKAKEMLETQVARLSAQQ 404
            D++ +                   ADEYLDKYCSLLISHEKLEKAKEMLETQVARLS+ +
Sbjct: 227  DSNAEELMAEMKELKETLEEKTKEADEYLDKYCSLLISHEKLEKAKEMLETQVARLSS-R 285

Query: 405  SKLNLRSSPLLSSAVPGPSPDPSTTEKKLSSSQNKASGKRQRSSGIRED-GETTPSTPET 581
            SK +L++SPLL+S VP  S  PS TEKKLSS QN ASGKRQRS+GIRED G T  STPET
Sbjct: 286  SKPHLQNSPLLNSVVPEASLAPSATEKKLSSGQNTASGKRQRSTGIREDGGGTASSTPET 345

Query: 582  FSKKSKKAVKSGFHPTEDLEDAECEPEGLPEVVKKGFADIPTGKTSPYVLRRTTMATRTS 761
            FSKKS+KAV+SG HP E+ +D E EPEGLPEVVKKGFADIPTGKTSPYVLRRTTM TRTS
Sbjct: 346  FSKKSRKAVRSGIHPAEEAKDTEFEPEGLPEVVKKGFADIPTGKTSPYVLRRTTMPTRTS 405

Query: 762  PRLAAQKLAPSPLSLNKENLAETSKPTAGGSRSQKV--------------KVTPQSPVDS 899
            PRLAAQKLA SPLSLNKEN AETS+PTAGGSRSQKV               V P    D+
Sbjct: 406  PRLAAQKLALSPLSLNKENHAETSQPTAGGSRSQKVTPMNLYPAFQIQEMTVLPGQGFDT 465

Query: 900  G----------AALREPTARSLSVT------------NLPERSSADS------------- 974
                        +L+  T+   S T             + ++S ADS             
Sbjct: 466  APFSMQHKGVEESLQGDTSEFRSDTLLASVRSEEEMVKVAQQSPADSSTAFREPTTRVSS 525

Query: 975  ---------PHEGLRAKRGRLVPSPEAGPQAKESENCRVQ 1067
                     P EGLRAKR RL PSPEA P++K SENCRVQ
Sbjct: 526  LPERSSADSPREGLRAKRSRLAPSPEAVPESKSSENCRVQ 565


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 55,188,129
Number of extensions: 1471827
Number of successful extensions: 6031
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5966
Number of HSP's successfully gapped: 2
Length of query: 477
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 370
Effective length of database: 15,307,552
Effective search space: 5663794240
Effective search space used: 5663794240
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-003983
         (1432 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_057427.3| centromere protein F [Homo sapiens].                 458   e-129

>ref|NP_057427.3| centromere protein F [Homo sapiens].
          Length = 3114

 Score =  458 bits (1178), Expect = e-129
 Identities = 241/342 (70%), Positives = 266/342 (77%), Gaps = 1/342 (0%)
 Frame = +3

Query: 45   SQMENLKYADKLKKENDRAQGKIKLLIKSCXXXXXXXXXXXXXXSRLEGVQEKQKTGTVV 224
            ++M+NLKY ++LKKEN+RAQGK+KLLIKSC              S+L+  QEKQKTGTV+
Sbjct: 2773 TKMDNLKYVNQLKKENERAQGKMKLLIKSCKQLEEEKEILQKELSQLQAAQEKQKTGTVM 2832

Query: 225  DASVDXXXXXXXXXXXXXXXXXXXADEYLDKYCSLLISHEKLEKAKEMLETQVARLSAQQ 404
            D  VD                   ADEYLDKYCSLLISHEKLEKAKEMLETQVA L +QQ
Sbjct: 2833 DTKVDELTTEIKELKETLEEKTKEADEYLDKYCSLLISHEKLEKAKEMLETQVAHLCSQQ 2892

Query: 405  SKLNLRSSPLLSSAVPGPSPDPSTTEKKLSSSQNKASGKRQRSSGIREDGE-TTPSTPET 581
            SK + R SPLL   VPGPSP PS TEK+LSS QNKASGKRQRSSGI E+G   TP+TPE+
Sbjct: 2893 SKQDSRGSPLLGPVVPGPSPIPSVTEKRLSSGQNKASGKRQRSSGIWENGRGPTPATPES 2952

Query: 582  FSKKSKKAVKSGFHPTEDLEDAECEPEGLPEVVKKGFADIPTGKTSPYVLRRTTMATRTS 761
            FSKKSKKAV SG HP ED E  E EPEGLPEVVKKGFADIPTGKTSPY+LRRTTMATRTS
Sbjct: 2953 FSKKSKKAVMSGIHPAEDTEGTEFEPEGLPEVVKKGFADIPTGKTSPYILRRTTMATRTS 3012

Query: 762  PRLAAQKLAPSPLSLNKENLAETSKPTAGGSRSQKVKVTPQSPVDSGAALREPTARSLSV 941
            PRLAAQKLA SPLSL KENLAE+SKPTAGGSRSQKVKV  +SPVDSG  LREPT +S+ V
Sbjct: 3013 PRLAAQKLALSPLSLGKENLAESSKPTAGGSRSQKVKVAQRSPVDSGTILREPTTKSVPV 3072

Query: 942  TNLPERSSADSPHEGLRAKRGRLVPSPEAGPQAKESENCRVQ 1067
             NLPERS  DSP EGLR KRGRLVPSP+AG ++  SENC+VQ
Sbjct: 3073 NNLPERSPTDSPREGLRVKRGRLVPSPKAGLESNGSENCKVQ 3114


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 54,193,848
Number of extensions: 1454128
Number of successful extensions: 5952
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5855
Number of HSP's successfully gapped: 1
Length of query: 477
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 371
Effective length of database: 14,802,980
Effective search space: 5491905580
Effective search space used: 5491905580
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-003983
         (1432 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001074832.2| centromere protein F [Mus musculus].              365   e-101

>ref|NP_001074832.2| centromere protein F [Mus musculus].
          Length = 2997

 Score =  365 bits (936), Expect = e-101
 Identities = 196/338 (57%), Positives = 241/338 (71%), Gaps = 1/338 (0%)
 Frame = +3

Query: 57   NLKYADKLKKENDRAQGKIKLLIKSCXXXXXXXXXXXXXXSRLEGVQEKQKTGTVVDASV 236
            +LK  ++L+KE  RAQGKIKL++KSC              S+LE  Q+ Q+ G++VD++V
Sbjct: 2661 HLKSVNQLEKELQRAQGKIKLMLKSCRQLEGEKEMLQKELSQLEAAQQ-QRAGSLVDSNV 2719

Query: 237  DXXXXXXXXXXXXXXXXXXXADEYLDKYCSLLISHEKLEKAKEMLETQVARLSAQQSKLN 416
            D                   AD+YLDKYCSLLISHE+LEKAKE+LE +VARL ++QS+ +
Sbjct: 2720 DEVMTENKALKETLEEKVKEADKYLDKYCSLLISHEELEKAKEILEIEVARLKSRQSRQD 2779

Query: 417  LRSSPLLSSAVPGPSPDPSTTEKKLSSSQNKASGKRQRSSGIREDGE-TTPSTPETFSKK 593
            L+SSPLL+S++PGPSP+ S +E K +S QNKASGKRQRSSGI E G+   PST ETFSKK
Sbjct: 2780 LQSSPLLNSSIPGPSPNTSVSEMKSASGQNKASGKRQRSSGIWEHGKRAAPSTAETFSKK 2839

Query: 594  SKKAVKSGFHPTEDLEDAECEPEGLPEVVKKGFADIPTGKTSPYVLRRTTMATRTSPRLA 773
            S+K+      P E  ++ E EPEGLPEVVKKGFADIPTGKTSPY+LRRTTMATRTSPR A
Sbjct: 2840 SRKSDSKSTRPAEHEQETEFEPEGLPEVVKKGFADIPTGKTSPYILRRTTMATRTSPRFA 2899

Query: 774  AQKLAPSPLSLNKENLAETSKPTAGGSRSQKVKVTPQSPVDSGAALREPTARSLSVTNLP 953
             QKL  S  SL KEN+ E+SKPTAGGSRSQKVKV  +S  DS  A +E  A+SL+ +N+P
Sbjct: 2900 TQKLVGSSPSLGKENVVESSKPTAGGSRSQKVKVVQESSADSHTAFQELPAKSLTASNIP 2959

Query: 954  ERSSADSPHEGLRAKRGRLVPSPEAGPQAKESENCRVQ 1067
             R+S +SP EGLRAKR     SP AGP    +ENCRVQ
Sbjct: 2960 GRNSTESPREGLRAKRAYPASSPAAGPDPTNNENCRVQ 2997


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 45,999,496
Number of extensions: 1220826
Number of successful extensions: 5021
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4959
Number of HSP's successfully gapped: 1
Length of query: 477
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 372
Effective length of database: 12,463,779
Effective search space: 4636525788
Effective search space used: 4636525788
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-003983
         (1432 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_003130443.2| PREDICTED: centromere protein F, partial [Su...   454   e-128

>ref|XP_003130443.2| PREDICTED: centromere protein F, partial [Sus scrofa].
          Length = 3003

 Score =  454 bits (1168), Expect = e-128
 Identities = 239/274 (87%), Positives = 241/274 (87%)
 Frame = +3

Query: 45   SQMENLKYADKLKKENDRAQGKIKLLIKSCXXXXXXXXXXXXXXSRLEGVQEKQKTGTVV 224
            ++MENLKYADKLKKENDRAQGKIKLLIKSC              SRLEGVQEKQKTGTVV
Sbjct: 2730 TKMENLKYADKLKKENDRAQGKIKLLIKSCKQLEEEKEMLQKELSRLEGVQEKQKTGTVV 2789

Query: 225  DASVDXXXXXXXXXXXXXXXXXXXADEYLDKYCSLLISHEKLEKAKEMLETQVARLSAQQ 404
            DASVD                   ADEYLDKYCSLLISHEKLEKAKEMLETQVARLSAQQ
Sbjct: 2790 DASVDELMIEMKELKETLEEKNKEADEYLDKYCSLLISHEKLEKAKEMLETQVARLSAQQ 2849

Query: 405  SKLNLRSSPLLSSAVPGPSPDPSTTEKKLSSSQNKASGKRQRSSGIREDGETTPSTPETF 584
            SKLNLRSSPLLSSAVPGPSPDPSTTEKKLSSSQNKASGKRQRSSGIREDGETTPSTPETF
Sbjct: 2850 SKLNLRSSPLLSSAVPGPSPDPSTTEKKLSSSQNKASGKRQRSSGIREDGETTPSTPETF 2909

Query: 585  SKKSKKAVKSGFHPTEDLEDAECEPEGLPEVVKKGFADIPTGKTSPYVLRRTTMATRTSP 764
            SKKSKKAVKSGFHPTEDLEDAECEPEGLPEVVKKGFADIPTGKTSPYVLRRTTMATRTSP
Sbjct: 2910 SKKSKKAVKSGFHPTEDLEDAECEPEGLPEVVKKGFADIPTGKTSPYVLRRTTMATRTSP 2969

Query: 765  RLAAQKLAPSPLSLNKENLAETSKPTAGGSRSQK 866
            RLAAQKLAPSPLSLNKENLAETSKPTAGGSRSQK
Sbjct: 2970 RLAAQKLAPSPLSLNKENLAETSKPTAGGSRSQK 3003


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 34,080,791
Number of extensions: 919230
Number of successful extensions: 4009
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3970
Number of HSP's successfully gapped: 1
Length of query: 477
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 374
Effective length of database: 8,779,541
Effective search space: 3283548334
Effective search space used: 3283548334
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-003983
         (1432 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr09                                                         983   0.0  

>Sscrofa_Chr09 
||          Length = 153670197

 Score =  983 bits (496), Expect = 0.0
 Identities = 546/568 (96%)
 Strand = Plus / Minus

                                                                             
Query: 865       aggtcaaggtgactccgcagagccccgtggattcaggcgctgccctccgagaacccactg 924
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141676879 aggtcaaggtgactccgcagagccccgtggattcaggcgctgccctccgagaacccactg 141676820

                                                                             
Query: 925       ccagatctctctccgtcactaaccttcctgagagaagttcggctgacagcccccatgagg 984
                 |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141676819 ccagatctctctccatcactaaccttcctgagagaagttcggctgacagcccccatgagg 141676760

                                                                             
Query: 985       gcctgagggccaagcgaggccggctggtccctagcccagaagctggcccccaggccaagg 1044
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141676759 gcctgagggccaagcgaggccggctggtccctagcccagaagctggcccccaggccaagg 141676700

                                                                             
Query: 1045      agagtgagaactgtagggtccagtagaagagccctgtgtgtcagcagccctgcagtgctg 1104
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141676699 agagtgagaactgtagggtccagtagaagagccctgtgtgtcagcagccctgcagtgctg 141676640

                                                                             
Query: 1105      aacagagggcagtgtgtctgcgaggctctcttgctggggagcacactgtcagagggagga 1164
                 |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141676639 aacagaaggcagtgtgtctgcgaggctctcttgctggggagcacactgtcagagggagga 141676580

                                                                             
Query: 1165      aaaccattccttataaatctaaatggaccagactctttagatttctcctcagcattagac 1224
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141676579 aaaccattccttataaatctaaatggaccagactctttagatttctcctcagcattagac 141676520

                                                                             
Query: 1225      aaatttggaagcactgattacctcttcacagacattcctctcctcttatgtagagtagtt 1284
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141676519 aaatttggaagcactgattacctcttcacagacattcctctcctcttatgtagagtagtt 141676460

                                                                             
Query: 1285      ctgtataaacctttttggtaatgttacacggaaatgggcagcactatataacacttctat 1344
                 ||||||||| |||||||||||||||||||||||||||  |||||||||||||||||||||
Sbjct: 141676459 ctgtataaatctttttggtaatgttacacggaaatggcaagcactatataacacttctat 141676400

                                                                             
Query: 1345      ttgtatgtggatattacactnnnnnnncgcaaaacannnnnnnnncccacttgaacagct 1404
                 ||||||||||||||||||||        ||||||||         |||||||||||||||
Sbjct: 141676399 ttgtatgtggatattacacttaaaaaatgcaaaacatttttttttcccacttgaacagct 141676340

                                             
Query: 1405      cccaggaaaatgtaaacttttgcgttac 1432
                 ||||||||||||||||||||||||||||
Sbjct: 141676339 cccaggaaaatgtaaacttttgcgttac 141676312



 Score =  858 bits (433), Expect = 0.0
 Identities = 464/479 (96%)
 Strand = Plus / Minus

                                                                             
Query: 210       acaggcactgtcgtggacgccagcgtcgatgaattaatgatcgagatgaaagaactgaaa 269
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141683793 acaggcactgtcgtggacgccagcgtcgatgaattaatgatcgagatgaaagaactgaaa 141683734

                                                                             
Query: 270       gaaactcttgaagnnnnnnncaaggaggcagacgaatacctggataaatactgttccctg 329
                 |||||||||||||       ||||||||||||||||||||||||||||||||||||||||
Sbjct: 141683733 gaaactcttgaagaaaaaaacaaggaggcagacgaatacctggataaatactgttccctg 141683674

                                                                             
Query: 330       cttataagccatgagaagttagagaaagccaaagagatgttagaaacacaagttgctcgt 389
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141683673 cttataagccatgagaagttagagaaagccaaagagatgttagaaacacaagttgctcgt 141683614

                                                                             
Query: 390       ctgagcgcacaacagtctaaacttaatcttcgaagctctcctttgctgagttcagctgtt 449
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141683613 ctgagcgcacaacagtctaaacttaatcttcgaagctctcctttgctgagttcagctgtt 141683554

                                                                             
Query: 450       ccaggaccatccccagacccttctactactgaaaagaaattatcatccagccaaaataaa 509
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141683553 ccaggaccatccccagacccttctactactgaaaagaaattatcatccagccaaaataaa 141683494

                                                                             
Query: 510       gcttcaggcaaaaggcaaaggtccagtgggattcgggaggatggagaaaccacgccttct 569
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 141683493 gcttcaggcaaaaggcaaaggtccagtgggattcgggaggatggagaaaccacaccttct 141683434

                                                                             
Query: 570       acgccagagacgttttctnnnnnnngcaagaaagctgtcaaaagtggttttcaccccaca 629
                 ||||||||||||||||||       |||||||||||||||||||||||||||||||||||
Sbjct: 141683433 acgccagagacgttttctaaaaaaagcaagaaagctgtcaaaagtggttttcaccccaca 141683374

                                                                            
Query: 630       gaggatttagaagacgctgagtgtgagccagagggacttccggaagttgtaaagaaagg 688
                 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141683373 gaggatttagaagacgctgagtgtgagccagagggacttccggaagttgtaaagaaagg 141683315



 Score =  363 bits (183), Expect = 2e-97
 Identities = 183/183 (100%)
 Strand = Plus / Minus

                                                                             
Query: 686       agggtttgctgatatcccaacaggaaagaccagcccatatgtcctgcggagaaccaccat 745
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141681876 agggtttgctgatatcccaacaggaaagaccagcccatatgtcctgcggagaaccaccat 141681817

                                                                             
Query: 746       ggccacaaggaccagcccccgccttgctgcgcagaagttagcaccatctcccctaagtct 805
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141681816 ggccacaaggaccagcccccgccttgctgcgcagaagttagcaccatctcccctaagtct 141681757

                                                                             
Query: 806       caacaaagaaaatcttgctgagacctccaaaccaacagctggtggcagcagatcacaaaa 865
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141681756 caacaaagaaaatcttgctgagacctccaaaccaacagctggtggcagcagatcacaaaa 141681697

                    
Query: 866       ggt 868
                 |||
Sbjct: 141681696 ggt 141681694



 Score =  329 bits (166), Expect = 2e-87
 Identities = 166/166 (100%)
 Strand = Plus / Minus

                                                                             
Query: 49        agatggaaaacctgaaatatgcagataagctgaaaaaggagaatgatcgtgcccagggga 108
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141685169 agatggaaaacctgaaatatgcagataagctgaaaaaggagaatgatcgtgcccagggga 141685110

                                                                             
Query: 109       aaataaagttgttgatcaaatcctgtaaacagctggaagaggaaaaggagatgttgcaga 168
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141685109 aaataaagttgttgatcaaatcctgtaaacagctggaagaggaaaaggagatgttgcaga 141685050

                                                               
Query: 169       aagaactctctcgtcttgagggcgtccaggagaaacagaagacagg 214
                 ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141685049 aagaactctctcgtcttgagggcgtccaggagaaacagaagacagg 141685004



 Score = 99.6 bits (50), Expect = 4e-18
 Identities = 50/50 (100%)
 Strand = Plus / Minus

                                                                   
Query: 1         tgtttggccaccaagaatatgtccagggatcctcagttcccacctcccag 50
                 ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141685794 tgtttggccaccaagaatatgtccagggatcctcagttcccacctcccag 141685745


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 45,375,816
Number of extensions: 273
Number of successful extensions: 273
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 271
Number of HSP's successfully gapped: 6
Length of query: 1432
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1411
Effective length of database: 2,808,413,156
Effective search space: 3962670963116
Effective search space used: 3962670963116
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)