Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003991
(1101 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001030214.1| cytochrome P450, family 4, subfamily F, poly... 476 e-141
Alignment gi|XP_002688602.1| PREDICTED: cytochrome P450, family 4, subfam... 479 e-135
Alignment gi|XP_002704774.1| PREDICTED: cytochrome P450, family 4, subfam... 479 e-135
Alignment gi|XP_002688601.1| PREDICTED: cytochrome P450, family 4, subfam... 468 e-132
Alignment gi|XP_586481.3| PREDICTED: cytochrome P450, family 4, subfamily... 468 e-132
Alignment gi|NP_001068790.1| cytochrome P450, family 4, subfamily F, poly... 441 e-131
Alignment gi|NP_001039856.1| leukotriene-B(4) omega-hydroxylase 2 [Bos ta... 389 e-108
Alignment gi|XP_002688603.1| PREDICTED: cytochrome P450, family 4, subfam... 310 2e-89
Alignment gi|NP_001071376.1| cytochrome P450, family 4, subfamily A, poly... 183 4e-47
Alignment gi|NP_001092460.1| cytochrome P450, family 4, subfamily A, poly... 185 5e-47
>ref|NP_001030214.1| cytochrome P450, family 4, subfamily F, polypeptide 2 [Bos taurus].
Length = 524
Score = 476 bits (1224), Expect(2) = e-141
Identities = 219/283 (77%), Positives = 245/283 (86%)
Frame = +3
Query: 159 MLQLSVSWLGLETVAASPWXXXXXVGASWLMSRVLVWTYAAYNYSRHLQSFPQPPKRNWF 338
ML+LS+SWLGL VAASPW GASWL++R+L WTY YN SR LQ FPQPPKRNWF
Sbjct: 1 MLELSLSWLGLGPVAASPWLLLLFTGASWLLARILAWTYTFYNNSRRLQCFPQPPKRNWF 60
Query: 339 LGHLGLVPPTEQGLRDLTQLVTNYPKGYMTWMGPITPLVILCHPDLIRTMANVSAAIASK 518
LGHLGLVPPTEQG+ LT+LV Y +G+ WMGPITP+++ CHPDLIR +AN SAA+A K
Sbjct: 61 LGHLGLVPPTEQGMSKLTELVAKYSQGFRIWMGPITPIIVFCHPDLIRIVANASAAVAPK 120
Query: 519 DVVFYEVLKPWLGDGLLLSAGDKWSSHRRMLTPAFHFNILKPYMKIFSDSVNVMHAKWQR 698
DV+FYEVLKPWLGDGLLLSAGDKWS HRRMLTPAFHFNILKPYMKIF+ S ++MHAKWQ
Sbjct: 121 DVIFYEVLKPWLGDGLLLSAGDKWSRHRRMLTPAFHFNILKPYMKIFTKSTDIMHAKWQH 180
Query: 699 LVTEGHNRLDMFEHISLMTLDSLQKCVFSFDSNCQEKPSEYIAAILELSALVAKRHQQIF 878
L+ EGH LDMFEHISLMTLDSLQKC+FS+DSNCQEKPSEYIAAILELSALVAKRHQ+IF
Sbjct: 181 LIKEGHTHLDMFEHISLMTLDSLQKCIFSYDSNCQEKPSEYIAAILELSALVAKRHQEIF 240
Query: 879 LHKDFLYYLTPEGRRFRKACHLVHNFTDAVIQERRRSLPKEGI 1007
LH DFLYYLTP+GRRFR+AC LVH+FTDAVIQE R+LP E I
Sbjct: 241 LHMDFLYYLTPDGRRFRRACRLVHDFTDAVIQEWHRTLPSESI 283
Score = 47.0 bits (110), Expect(2) = e-141
Identities = 22/26 (84%), Positives = 23/26 (88%)
Frame = +2
Query: 1022 RPKANAKTLDFIDVLLLTKDEDGKGL 1099
+ KA KTLDFIDVLLLTKDEDGKGL
Sbjct: 288 KAKAKTKTLDFIDVLLLTKDEDGKGL 313
>ref|XP_002688602.1| PREDICTED: cytochrome P450, family 4, subfamily F, polypeptide 2-like
[Bos taurus].
Length = 524
Score = 479 bits (1234), Expect = e-135
Identities = 226/283 (79%), Positives = 249/283 (87%)
Frame = +3
Query: 159 MLQLSVSWLGLETVAASPWXXXXXVGASWLMSRVLVWTYAAYNYSRHLQSFPQPPKRNWF 338
ML+LS+SWLGL VAASPW VGASW+++ VL WTY +YN S L+ FPQPPKRNWF
Sbjct: 1 MLELSLSWLGLGPVAASPWLLLLLVGASWILAHVLAWTYTSYNNSLRLRCFPQPPKRNWF 60
Query: 339 LGHLGLVPPTEQGLRDLTQLVTNYPKGYMTWMGPITPLVILCHPDLIRTMANVSAAIASK 518
LGHLGLVPPTEQGL +TQLVTNYP+GY+ WMGPI PLVI CHPDLIRT A+ SAAIA K
Sbjct: 61 LGHLGLVPPTEQGLSKVTQLVTNYPQGYLMWMGPIIPLVIFCHPDLIRTFASASAAIAPK 120
Query: 519 DVVFYEVLKPWLGDGLLLSAGDKWSSHRRMLTPAFHFNILKPYMKIFSDSVNVMHAKWQR 698
+VVFY LKPWLGDGLLLSAGDKWSSHRRMLTPAFHFNILKPYMKIF+ S ++MHAKWQR
Sbjct: 121 NVVFYNFLKPWLGDGLLLSAGDKWSSHRRMLTPAFHFNILKPYMKIFTKSADIMHAKWQR 180
Query: 699 LVTEGHNRLDMFEHISLMTLDSLQKCVFSFDSNCQEKPSEYIAAILELSALVAKRHQQIF 878
L+ EGH LDMFEHISLMTLDSLQKCVFS+DSNCQEKPS+YIAAILELSALVAKR+QQIF
Sbjct: 181 LIIEGHTHLDMFEHISLMTLDSLQKCVFSYDSNCQEKPSDYIAAILELSALVAKRYQQIF 240
Query: 879 LHKDFLYYLTPEGRRFRKACHLVHNFTDAVIQERRRSLPKEGI 1007
LH DFLYYLTP+G RFR+AC LVH+FT AVIQERRR+LPKE I
Sbjct: 241 LHMDFLYYLTPDGWRFRRACRLVHDFTGAVIQERRRTLPKEDI 283
>ref|XP_002704774.1| PREDICTED: cytochrome P450, family 4, subfamily F, polypeptide 2-like
[Bos taurus].
Length = 524
Score = 479 bits (1234), Expect = e-135
Identities = 226/283 (79%), Positives = 249/283 (87%)
Frame = +3
Query: 159 MLQLSVSWLGLETVAASPWXXXXXVGASWLMSRVLVWTYAAYNYSRHLQSFPQPPKRNWF 338
ML+LS+SWLGL VAASPW VGASW+++ VL WTY +YN S L+ FPQPPKRNWF
Sbjct: 1 MLELSLSWLGLGPVAASPWLLLLLVGASWILAHVLAWTYTSYNNSLRLRCFPQPPKRNWF 60
Query: 339 LGHLGLVPPTEQGLRDLTQLVTNYPKGYMTWMGPITPLVILCHPDLIRTMANVSAAIASK 518
LGHLGLVPPTEQGL +TQLVTNYP+GY+ WMGPI PLVI CHPDLIRT A+ SAAIA K
Sbjct: 61 LGHLGLVPPTEQGLSKVTQLVTNYPQGYLMWMGPIIPLVIFCHPDLIRTFASASAAIAPK 120
Query: 519 DVVFYEVLKPWLGDGLLLSAGDKWSSHRRMLTPAFHFNILKPYMKIFSDSVNVMHAKWQR 698
+VVFY LKPWLGDGLLLSAGDKWSSHRRMLTPAFHFNILKPYMKIF+ S ++MHAKWQR
Sbjct: 121 NVVFYNFLKPWLGDGLLLSAGDKWSSHRRMLTPAFHFNILKPYMKIFTKSADIMHAKWQR 180
Query: 699 LVTEGHNRLDMFEHISLMTLDSLQKCVFSFDSNCQEKPSEYIAAILELSALVAKRHQQIF 878
L+ EGH LDMFEHISLMTLDSLQKCVFS+DSNCQEKPS+YIAAILELSALVAKR+QQIF
Sbjct: 181 LIIEGHTHLDMFEHISLMTLDSLQKCVFSYDSNCQEKPSDYIAAILELSALVAKRYQQIF 240
Query: 879 LHKDFLYYLTPEGRRFRKACHLVHNFTDAVIQERRRSLPKEGI 1007
LH DFLYYLTP+G RFR+AC LVH+FT AVIQERRR+LPKE I
Sbjct: 241 LHMDFLYYLTPDGWRFRRACRLVHDFTGAVIQERRRTLPKEDI 283
>ref|XP_002688601.1| PREDICTED: cytochrome P450, family 4, subfamily F, polypeptide 2-like
[Bos taurus].
Length = 523
Score = 468 bits (1203), Expect = e-132
Identities = 215/282 (76%), Positives = 244/282 (86%)
Frame = +3
Query: 159 MLQLSVSWLGLETVAASPWXXXXXVGASWLMSRVLVWTYAAYNYSRHLQSFPQPPKRNWF 338
ML+LS+SWLGL VAASPW VGASW+++ VL WTY YN SRHLQ FPQPPKRNWF
Sbjct: 1 MLELSLSWLGLRPVAASPWLLLVLVGASWILAHVLAWTYTFYNNSRHLQCFPQPPKRNWF 60
Query: 339 LGHLGLVPPTEQGLRDLTQLVTNYPKGYMTWMGPITPLVILCHPDLIRTMANVSAAIASK 518
LGH+G PPTE+GLRD TQLV NYP+G+ +GP P++I CHPD+IR +AN SAA A K
Sbjct: 61 LGHMGQYPPTEKGLRDFTQLVANYPQGFRICLGPAIPIIIFCHPDMIRIVANASAAAAPK 120
Query: 519 DVVFYEVLKPWLGDGLLLSAGDKWSSHRRMLTPAFHFNILKPYMKIFSDSVNVMHAKWQR 698
DV+FY+ LKPWLGDGLLLSAGDKWS HRRMLTPAFHFNILKPYMKIF+ S ++MHAKWQR
Sbjct: 121 DVIFYDFLKPWLGDGLLLSAGDKWSRHRRMLTPAFHFNILKPYMKIFTKSADIMHAKWQR 180
Query: 699 LVTEGHNRLDMFEHISLMTLDSLQKCVFSFDSNCQEKPSEYIAAILELSALVAKRHQQIF 878
L+TEGH LDMFEHISLMTLDSLQKCVFS+DSNCQEKP+EYIA+ILELSALVAKR+QQIF
Sbjct: 181 LITEGHTHLDMFEHISLMTLDSLQKCVFSYDSNCQEKPNEYIASILELSALVAKRNQQIF 240
Query: 879 LHKDFLYYLTPEGRRFRKACHLVHNFTDAVIQERRRSLPKEG 1004
LH DFLY+LTP+ RRFR+AC LVH+FTDAVIQERR +LP EG
Sbjct: 241 LHMDFLYFLTPDWRRFRRACRLVHDFTDAVIQERRHTLPSEG 282
>ref|XP_586481.3| PREDICTED: cytochrome P450, family 4, subfamily F, polypeptide 2-like
[Bos taurus].
Length = 523
Score = 468 bits (1203), Expect = e-132
Identities = 215/282 (76%), Positives = 244/282 (86%)
Frame = +3
Query: 159 MLQLSVSWLGLETVAASPWXXXXXVGASWLMSRVLVWTYAAYNYSRHLQSFPQPPKRNWF 338
ML+LS+SWLGL VAASPW VGASW+++ VL WTY YN SRHLQ FPQPPKRNWF
Sbjct: 1 MLELSLSWLGLRPVAASPWLLLVLVGASWILAHVLAWTYTFYNNSRHLQCFPQPPKRNWF 60
Query: 339 LGHLGLVPPTEQGLRDLTQLVTNYPKGYMTWMGPITPLVILCHPDLIRTMANVSAAIASK 518
LGH+G PPTE+GLRD TQLV NYP+G+ +GP P++I CHPD+IR +AN SAA A K
Sbjct: 61 LGHMGQYPPTEKGLRDFTQLVANYPQGFRICLGPAIPIIIFCHPDMIRIVANASAAAAPK 120
Query: 519 DVVFYEVLKPWLGDGLLLSAGDKWSSHRRMLTPAFHFNILKPYMKIFSDSVNVMHAKWQR 698
DV+FY+ LKPWLGDGLLLSAGDKWS HRRMLTPAFHFNILKPYMKIF+ S ++MHAKWQR
Sbjct: 121 DVIFYDFLKPWLGDGLLLSAGDKWSRHRRMLTPAFHFNILKPYMKIFTKSADIMHAKWQR 180
Query: 699 LVTEGHNRLDMFEHISLMTLDSLQKCVFSFDSNCQEKPSEYIAAILELSALVAKRHQQIF 878
L+TEGH LDMFEHISLMTLDSLQKCVFS+DSNCQEKP+EYIA+ILELSALVAKR+QQIF
Sbjct: 181 LITEGHTHLDMFEHISLMTLDSLQKCVFSYDSNCQEKPNEYIASILELSALVAKRNQQIF 240
Query: 879 LHKDFLYYLTPEGRRFRKACHLVHNFTDAVIQERRRSLPKEG 1004
LH DFLY+LTP+ RRFR+AC LVH+FTDAVIQERR +LP EG
Sbjct: 241 LHMDFLYFLTPDWRRFRRACRLVHDFTDAVIQERRHTLPSEG 282
>ref|NP_001068790.1| cytochrome P450, family 4, subfamily F, polypeptide 2 [Bos taurus].
Length = 523
Score = 441 bits (1135), Expect(2) = e-131
Identities = 205/283 (72%), Positives = 237/283 (83%)
Frame = +3
Query: 159 MLQLSVSWLGLETVAASPWXXXXXVGASWLMSRVLVWTYAAYNYSRHLQSFPQPPKRNWF 338
ML+LS+S LGL +AASPW G SW+++RVL WTY YN SR L+ F QPPK NWF
Sbjct: 1 MLELSLSRLGLGPLAASPWLLPLLAGVSWILARVLAWTYTFYNNSRRLRCFLQPPKPNWF 60
Query: 339 LGHLGLVPPTEQGLRDLTQLVTNYPKGYMTWMGPITPLVILCHPDLIRTMANVSAAIASK 518
LGH+ LVP TEQGL TQ+ NYP+GY+ W GPI P+VI CHPD++R++ N SAAIA K
Sbjct: 61 LGHMNLVPSTEQGLIYFTQMAANYPRGYLIWFGPIIPMVIFCHPDMLRSITNASAAIAPK 120
Query: 519 DVVFYEVLKPWLGDGLLLSAGDKWSSHRRMLTPAFHFNILKPYMKIFSDSVNVMHAKWQR 698
D+ FY LKPWLGDGLLLSAGDKWSSHRRMLTPAFHFNILKPY+KIF+ S +MHAKW+
Sbjct: 121 DMQFYGTLKPWLGDGLLLSAGDKWSSHRRMLTPAFHFNILKPYIKIFTKSAEIMHAKWEH 180
Query: 699 LVTEGHNRLDMFEHISLMTLDSLQKCVFSFDSNCQEKPSEYIAAILELSALVAKRHQQIF 878
L+TEGH LDMFEHISL+TLD+LQKCVFSFDSNCQEKPSEYIAAILELSALV+KR+QQ+F
Sbjct: 181 LITEGHTHLDMFEHISLLTLDNLQKCVFSFDSNCQEKPSEYIAAILELSALVSKRNQQLF 240
Query: 879 LHKDFLYYLTPEGRRFRKACHLVHNFTDAVIQERRRSLPKEGI 1007
L+ DFLYYLT +G+RFR AC LVH+FTDAVIQERRR+LPKE I
Sbjct: 241 LYMDFLYYLTSDGQRFRNACRLVHDFTDAVIQERRRTLPKENI 283
Score = 47.0 bits (110), Expect(2) = e-131
Identities = 22/26 (84%), Positives = 23/26 (88%)
Frame = +2
Query: 1022 RPKANAKTLDFIDVLLLTKDEDGKGL 1099
+ KA KTLDFIDVLLLTKDEDGKGL
Sbjct: 288 KAKAKTKTLDFIDVLLLTKDEDGKGL 313
>ref|NP_001039856.1| leukotriene-B(4) omega-hydroxylase 2 [Bos taurus].
Length = 522
Score = 389 bits (998), Expect = e-108
Identities = 184/282 (65%), Positives = 220/282 (78%)
Frame = +3
Query: 159 MLQLSVSWLGLETVAASPWXXXXXVGASWLMSRVLVWTYAAYNYSRHLQSFPQPPKRNWF 338
ML+LS+SWLGL VAASPW VGASW+++R+L W YA Y+ L+ FPQPPKR+WF
Sbjct: 1 MLELSLSWLGLGPVAASPWLLLLLVGASWILARILAWIYAFYDNCCRLRCFPQPPKRSWF 60
Query: 339 LGHLGLVPPTEQGLRDLTQLVTNYPKGYMTWMGPITPLVILCHPDLIRTMANVSAAIASK 518
GHLGL E+ +R + +L + ++ WMGP P++ L HP+ + + SA I K
Sbjct: 61 WGHLGLAQSNEESMRLVEELGHYFRDVHLWWMGPFFPILRLVHPNFVAPLLQASATIIPK 120
Query: 519 DVVFYEVLKPWLGDGLLLSAGDKWSSHRRMLTPAFHFNILKPYMKIFSDSVNVMHAKWQR 698
D+ FY LKPWLGDGLLLSAGDKWSSHRR+LTPAFHF ILKPYMKIF+ S ++MHAKWQR
Sbjct: 121 DMFFYSFLKPWLGDGLLLSAGDKWSSHRRLLTPAFHFEILKPYMKIFNKSADIMHAKWQR 180
Query: 699 LVTEGHNRLDMFEHISLMTLDSLQKCVFSFDSNCQEKPSEYIAAILELSALVAKRHQQIF 878
L EG RLDMFEHISLMTLDSLQKCVFS+DSNCQEKPSEYIAAILELSALV KR + IF
Sbjct: 181 LALEGSTRLDMFEHISLMTLDSLQKCVFSYDSNCQEKPSEYIAAILELSALVMKRIKHIF 240
Query: 879 LHKDFLYYLTPEGRRFRKACHLVHNFTDAVIQERRRSLPKEG 1004
LH DFLYYLT +G+RF +AC LVH+FTDA+IQ+RRR+L +G
Sbjct: 241 LHVDFLYYLTRDGQRFYRACRLVHDFTDAIIQKRRRTLISQG 282
>ref|XP_002688603.1| PREDICTED: cytochrome P450, family 4, subfamily F, polypeptide
22-like [Bos taurus].
Length = 531
Score = 310 bits (795), Expect(2) = 2e-89
Identities = 146/248 (58%), Positives = 185/248 (74%)
Frame = +3
Query: 261 LVWTYAAYNYSRHLQSFPQPPKRNWFLGHLGLVPPTEQGLRDLTQLVTNYPKGYMTWMGP 440
L W + Y R L+ FPQPP+RNW LGHLG+ P E+GL+D +++ + + W+GP
Sbjct: 45 LCWGF--YITCRRLRCFPQPPRRNWLLGHLGMYLPNERGLQDEKKVLDDMHHVILVWLGP 102
Query: 441 ITPLVILCHPDLIRTMANVSAAIASKDVVFYEVLKPWLGDGLLLSAGDKWSSHRRMLTPA 620
+ PLV+L HPD I+ + SAA+A KD +FY LKPWLGDGLLLS GDKWS HRR+LTPA
Sbjct: 103 VLPLVVLVHPDYIKPLVGASAAVAPKDDLFYGFLKPWLGDGLLLSRGDKWSRHRRLLTPA 162
Query: 621 FHFNILKPYMKIFSDSVNVMHAKWQRLVTEGHNRLDMFEHISLMTLDSLQKCVFSFDSNC 800
FHF+ILKPYMKIF+ + MHAKW+ L LDMFEH+SLMTLD LQKCVFS++SNC
Sbjct: 163 FHFDILKPYMKIFNQCADTMHAKWRGLAEGSEVSLDMFEHVSLMTLDCLQKCVFSYNSNC 222
Query: 801 QEKPSEYIAAILELSALVAKRHQQIFLHKDFLYYLTPEGRRFRKACHLVHNFTDAVIQER 980
QEK S+YI+AI+ELSALV +R ++ + DF+YY T +GRRFR+AC VH FT VIQER
Sbjct: 223 QEKMSDYISAIIELSALVVRRQYRLHHYLDFIYYRTADGRRFRQACDTVHGFTTEVIQER 282
Query: 981 RRSLPKEG 1004
RR+L ++G
Sbjct: 283 RRALRQQG 290
Score = 38.1 bits (87), Expect(2) = 2e-89
Identities = 18/20 (90%), Positives = 18/20 (90%)
Frame = +2
Query: 1040 KTLDFIDVLLLTKDEDGKGL 1099
KTLDFIDVLLL KDEDGK L
Sbjct: 301 KTLDFIDVLLLAKDEDGKEL 320
>ref|NP_001071376.1| cytochrome P450, family 4, subfamily A, polypeptide 11 [Bos taurus].
Length = 514
Score = 183 bits (465), Expect(2) = 4e-47
Identities = 108/261 (41%), Positives = 146/261 (55%), Gaps = 8/261 (3%)
Frame = +3
Query: 246 LMSRVLVWTYAAYNYSRH------LQSFPQPPKRNWFLGHLGLVPPTEQGLRDLTQLVTN 407
L+ VL+ AA Y R L FP PP +WF GH E L L + V
Sbjct: 24 LLGLVLLLIKAAQLYLRRQWLLKALHHFPSPPS-HWFYGHKREFQE-EGELPHLLKRVEK 81
Query: 408 YPKGYMTWMGPITPLVILCHPDLIRTMANVSAAIASKDVVFYEVLKPWLGDGLLLSAGDK 587
YP+ + WM L+++ PD ++ + S A + + +KPW+G GLLL G
Sbjct: 82 YPRACVRWMWGTRALLLVYDPDYMKMVLGRSDPKAQ---IIHRFVKPWIGTGLLLLEGQT 138
Query: 588 WSSHRRMLTPAFHFNILKPYMKIFSDSVNVMHAKWQRLVTEGHNRLDMFEHISLMTLDSL 767
W HRRMLTPAFH++ILKPY+ I +DSV VM KW+ LV++ + L++F H+SLMTLD++
Sbjct: 139 WFQHRRMLTPAFHYDILKPYVGIMADSVRVMLDKWEELVSQ-DSHLEIFGHVSLMTLDTI 197
Query: 768 QKCVFSFDSNCQ--EKPSEYIAAILELSALVAKRHQQIFLHKDFLYYLTPEGRRFRKACH 941
KC FS + Q YI AI ++S L+ R + F D +Y LTPEG +AC
Sbjct: 198 MKCAFSQQGSVQTDRNSQSYIQAIKDVSHLIISRLRNAFHQNDLIYRLTPEGHWNHRACQ 257
Query: 942 LVHNFTDAVIQERRRSLPKEG 1004
L H TDAVI+ER+ L KEG
Sbjct: 258 LAHQHTDAVIKERKVRLQKEG 278
Score = 23.9 bits (50), Expect(2) = 4e-47
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +2
Query: 1046 LDFIDVLLLTKDEDGKGL 1099
LDF+D+LL + E+G L
Sbjct: 289 LDFLDILLFARMENGSSL 306
>ref|NP_001092460.1| cytochrome P450, family 4, subfamily A, polypeptide 22 [Bos taurus].
Length = 515
Score = 185 bits (470), Expect = 5e-47
Identities = 110/261 (42%), Positives = 144/261 (55%), Gaps = 8/261 (3%)
Frame = +3
Query: 246 LMSRVLVWTYAAYNYSRH------LQSFPQPPKRNWFLGHLGLVPPTEQGLRDLTQLVTN 407
L+ VL+ AA Y R L FP PP +WF GH E L L + V
Sbjct: 24 LLGLVLLLLKAAQLYLRRQWLLKALHQFPSPPS-HWFYGHKKEFQK-ESELPPLLERVEK 81
Query: 408 YPKGYMTWMGPITPLVILCHPDLIRTMANVSAAIASKDVVFYEVLKPWLGDGLLLSAGDK 587
YPK + W+ LV++ PD ++ S + Y+ L PW+G GLLL G K
Sbjct: 82 YPKACVRWLWGTKALVLVYDPDYMKVFLGRSDPKPHRT---YKYLAPWIGTGLLLLEGQK 138
Query: 588 WSSHRRMLTPAFHFNILKPYMKIFSDSVNVMHAKWQRLVTEGHNRLDMFEHISLMTLDSL 767
W HRRMLTPAF ++ILK Y+ I +DSV VM KW+ LV++ + L++F H+SLMTLD++
Sbjct: 139 WFQHRRMLTPAFRYDILKAYVGIMADSVRVMLDKWEELVSQ-DSHLEIFGHVSLMTLDTI 197
Query: 768 QKCVFSFDSNCQ--EKPSEYIAAILELSALVAKRHQQIFLHKDFLYYLTPEGRRFRKACH 941
KC FS + Q YI AI +LS L+ R + F D +Y LTPEGR +AC
Sbjct: 198 MKCAFSHQGSVQMDRSSQSYIQAIRDLSHLIVSRLRNAFHQNDLIYRLTPEGRWNHRACQ 257
Query: 942 LVHNFTDAVIQERRRSLPKEG 1004
L H TDAVI+ER+ L KEG
Sbjct: 258 LTHQHTDAVIKERKAHLQKEG 278
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 49,229,995
Number of extensions: 1554771
Number of successful extensions: 6643
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 6612
Number of HSP's successfully gapped: 17
Length of query: 367
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 263
Effective length of database: 14,240,222
Effective search space: 3745178386
Effective search space used: 3745178386
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003991
(1101 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_541982.2| PREDICTED: similar to Cytochrome P450 4F3 (CYPI... 416 e-116
Alignment gi|XP_541983.2| PREDICTED: similar to Cytochrome P450 4F6 (CYPI... 382 e-106
Alignment gi|XP_541984.2| PREDICTED: similar to cytochrome P450, family 2... 317 1e-90
Alignment gi|NP_001041482.1| cytochrome P450 4A38 [Canis lupus familiaris]. 182 1e-48
Alignment gi|NP_001041499.1| cytochrome P450, family 4, subfamily A, poly... 181 4e-48
Alignment gi|NP_001041490.1| cytochrome P450 4A37 [Canis lupus familiaris]. 175 8e-47
Alignment gi|XP_850244.1| PREDICTED: similar to cytochrome P450, family 4... 157 8e-40
Alignment gi|NP_001193862.1| cytochrome P450 4X1 [Canis lupus familiaris]. 157 2e-38
Alignment gi|XP_860991.1| PREDICTED: similar to cytochrome P450, family 4... 145 2e-36
Alignment gi|XP_849364.1| PREDICTED: similar to cytochrome P450, family 4... 119 5e-27
>ref|XP_541982.2| PREDICTED: similar to Cytochrome P450 4F3 (CYPIVF3) (Leukotriene-B(4)
omega-hydroxylase) (Leukotriene-B(4) 20-monooxygenase)
(Cytochrome P450-LTB-omega) [Canis familiaris].
Length = 465
Score = 416 bits (1069), Expect = e-116
Identities = 201/283 (71%), Positives = 233/283 (82%)
Frame = +3
Query: 159 MLQLSVSWLGLETVAASPWXXXXXVGASWLMSRVLVWTYAAYNYSRHLQSFPQPPKRNWF 338
MLQLS+SWLGL +AASPW VGA+WL++RVL W+Y+ Y+ R LQ FPQPPKRNWF
Sbjct: 1 MLQLSLSWLGLGQLAASPWVLLLLVGATWLLTRVLAWSYSFYDIRRRLQCFPQPPKRNWF 60
Query: 339 LGHLGLVPPTEQGLRDLTQLVTNYPKGYMTWMGPITPLVILCHPDLIRTMANVSAAIASK 518
GH+GL+ +E+GL +L + Y W+GP ++ + HP I+ + SAAIA K
Sbjct: 61 WGHVGLIQSSEEGLLYTQELASTYGDVCCWWVGPWHAVIRIFHPTYIKPVLFSSAAIAPK 120
Query: 519 DVVFYEVLKPWLGDGLLLSAGDKWSSHRRMLTPAFHFNILKPYMKIFSDSVNVMHAKWQR 698
D+VFY +LKPWLGDGLLLSAGDKWSSHRRMLTPAFHFNILKPY+KIF+ S NVMHAKW+R
Sbjct: 121 DMVFYSLLKPWLGDGLLLSAGDKWSSHRRMLTPAFHFNILKPYVKIFNYSTNVMHAKWKR 180
Query: 699 LVTEGHNRLDMFEHISLMTLDSLQKCVFSFDSNCQEKPSEYIAAILELSALVAKRHQQIF 878
LV+EG LDMFEHISLMTLDSLQKCVFSFDSNCQEKPSEYIAAILELSALVAKRHQQI
Sbjct: 181 LVSEGSTHLDMFEHISLMTLDSLQKCVFSFDSNCQEKPSEYIAAILELSALVAKRHQQI- 239
Query: 879 LHKDFLYYLTPEGRRFRKACHLVHNFTDAVIQERRRSLPKEGI 1007
LH DFLYYLTP+G+RFR+AC LVHNFTDAVIQERRR+LP +G+
Sbjct: 240 LHMDFLYYLTPDGQRFRRACRLVHNFTDAVIQERRRTLPVQGV 282
>ref|XP_541983.2| PREDICTED: similar to Cytochrome P450 4F6 (CYPIVF6) [Canis
familiaris].
Length = 540
Score = 382 bits (980), Expect = e-106
Identities = 180/282 (63%), Positives = 217/282 (76%)
Frame = +3
Query: 159 MLQLSVSWLGLETVAASPWXXXXXVGASWLMSRVLVWTYAAYNYSRHLQSFPQPPKRNWF 338
MLQ+S+SWLGL +AASPW GA+WL++RVL W+Y+ Y+ L+ FPQPPKRNWF
Sbjct: 21 MLQVSLSWLGLGQLAASPWVLLLLAGATWLLARVLTWSYSFYDNCCRLRCFPQPPKRNWF 80
Query: 339 LGHLGLVPPTEQGLRDLTQLVTNYPKGYMTWMGPITPLVILCHPDLIRTMANVSAAIASK 518
GHLGLV E+GLR + L + ++ W+GP P++ L HP + + A I K
Sbjct: 81 WGHLGLVKSNEEGLRMIEDLGHYFRDVHLWWIGPFYPVLRLVHPKFVAPLLQAPATIVPK 140
Query: 519 DVVFYEVLKPWLGDGLLLSAGDKWSSHRRMLTPAFHFNILKPYMKIFSDSVNVMHAKWQR 698
D+ FY LKPWLGDGLLLSAGDKWS HRR+LTPAFHF ILK Y+KIF+ S ++MHAKW+R
Sbjct: 141 DMFFYNFLKPWLGDGLLLSAGDKWSHHRRLLTPAFHFEILKSYVKIFNRSADIMHAKWKR 200
Query: 699 LVTEGHNRLDMFEHISLMTLDSLQKCVFSFDSNCQEKPSEYIAAILELSALVAKRHQQIF 878
LV+EG LDMFEHISLMTLDSLQKCVFSFDSNCQE PSEYIAAILELSALV KR++Q+
Sbjct: 201 LVSEGSTHLDMFEHISLMTLDSLQKCVFSFDSNCQESPSEYIAAILELSALVVKRNEQVL 260
Query: 879 LHKDFLYYLTPEGRRFRKACHLVHNFTDAVIQERRRSLPKEG 1004
L+ DFLY L+P+GRRFR+AC LVHNFTDA+IQERR +L G
Sbjct: 261 LYLDFLYNLSPDGRRFRRACELVHNFTDAIIQERRHTLISRG 302
>ref|XP_541984.2| PREDICTED: similar to cytochrome P450, family 2, subfamily E,
polypeptide 2 homolog [Canis familiaris].
Length = 531
Score = 317 bits (812), Expect(2) = 1e-90
Identities = 149/253 (58%), Positives = 189/253 (74%)
Frame = +3
Query: 246 LMSRVLVWTYAAYNYSRHLQSFPQPPKRNWFLGHLGLVPPTEQGLRDLTQLVTNYPKGYM 425
L+ + L + + Y R L FPQPP+RNW LGHLG+ P E GL+D +++ N +
Sbjct: 38 LLMQFLRFCWRFYITCRRLSCFPQPPRRNWLLGHLGMYLPNETGLQDEKKVLDNMHHVIL 97
Query: 426 TWMGPITPLVILCHPDLIRTMANVSAAIASKDVVFYEVLKPWLGDGLLLSAGDKWSSHRR 605
W+GP+ PL++L HPD I+ + SAAIA KD +FY LKPWLGDGLLLS GDKWS HRR
Sbjct: 98 VWIGPVLPLLVLVHPDYIKPLVGASAAIAPKDDLFYGFLKPWLGDGLLLSKGDKWSRHRR 157
Query: 606 MLTPAFHFNILKPYMKIFSDSVNVMHAKWQRLVTEGHNRLDMFEHISLMTLDSLQKCVFS 785
+LTPAFHF+ILKPYMKIF+ ++MH KW+RL LDMFEH+SLMTLDSLQKCVFS
Sbjct: 158 LLTPAFHFDILKPYMKIFNQCTDIMHGKWRRLAQGSVISLDMFEHVSLMTLDSLQKCVFS 217
Query: 786 FDSNCQEKPSEYIAAILELSALVAKRHQQIFLHKDFLYYLTPEGRRFRKACHLVHNFTDA 965
++SNCQEK S+YI+AI+ELSALV +R ++ H DF+YYLT +GRRFR+AC VH FT
Sbjct: 218 YNSNCQEKMSDYISAIIELSALVVRRQYRLHHHIDFIYYLTADGRRFRQACDTVHRFTTE 277
Query: 966 VIQERRRSLPKEG 1004
VIQERR++L ++G
Sbjct: 278 VIQERRQALRQQG 290
Score = 35.8 bits (81), Expect(2) = 1e-90
Identities = 16/20 (80%), Positives = 18/20 (90%)
Frame = +2
Query: 1040 KTLDFIDVLLLTKDEDGKGL 1099
KTLDFIDVLLL +DEDG+ L
Sbjct: 301 KTLDFIDVLLLARDEDGREL 320
>ref|NP_001041482.1| cytochrome P450 4A38 [Canis lupus familiaris].
Length = 510
Score = 182 bits (462), Expect(2) = 1e-48
Identities = 100/237 (42%), Positives = 139/237 (58%), Gaps = 2/237 (0%)
Frame = +3
Query: 300 LQSFPQPPKRNWFLGHLGLVPPTEQGLRDLTQLVTNYPKGYMTWMGPITPLVILCHPDLI 479
+Q FP PP +WF GH + L++L + YP W+ +++ PD +
Sbjct: 48 IQQFPSPPS-HWFFGHRQEFQKGRE-LQELKKRTEKYPCASPRWLWGSRVSLVVYDPDYM 105
Query: 480 RTMANVSAAIASKDVVFYEVLKPWLGDGLLLSAGDKWSSHRRMLTPAFHFNILKPYMKIF 659
R + S K Y ++ PW+G GLLL G+ W HRRMLTPAFH++ILKPY+++
Sbjct: 106 RMILGRSDP---KSDGSYRLMAPWIGYGLLLLNGEIWFQHRRMLTPAFHYDILKPYVRLM 162
Query: 660 SDSVNVMHAKWQRLVTEGHNRLDMFEHISLMTLDSLQKCVFSFDSNCQ--EKPSEYIAAI 833
+DSV VM KW+ L+T+ ++ L++FEH+SLMTLD++ KC FS+ N Q YI AI
Sbjct: 163 ADSVQVMLDKWEELLTQ-NSHLEIFEHVSLMTLDTIMKCAFSYQGNHQADRNSQAYIQAI 221
Query: 834 LELSALVAKRHQQIFLHKDFLYYLTPEGRRFRKACHLVHNFTDAVIQERRRSLPKEG 1004
+L+ LV R + +F KD Y LT EGRR KAC L H TD VI+ R+ L EG
Sbjct: 222 RDLNNLVFARVRNVFYQKDIFYGLTSEGRRNHKACQLAHEHTDRVIKLRKAQLQDEG 278
Score = 30.0 bits (66), Expect(2) = 1e-48
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +2
Query: 1034 NAKTLDFIDVLLLTKDEDGKGL 1099
N + LDF+D+LL K E+G+GL
Sbjct: 285 NKRHLDFLDILLFAKMENGRGL 306
>ref|NP_001041499.1| cytochrome P450, family 4, subfamily A, polypeptide 11 [Canis lupus
familiaris].
Length = 510
Score = 181 bits (458), Expect(2) = 4e-48
Identities = 101/261 (38%), Positives = 152/261 (58%), Gaps = 8/261 (3%)
Frame = +3
Query: 246 LMSRVLVWTYAAYNYSRH------LQSFPQPPKRNWFLGHLGLVPPTEQGLRDLTQLVTN 407
L+ L+ AA Y R +Q FP PP +W GH + ++ L+ L + + +
Sbjct: 24 LLGLALLLLKAAQLYQRRQWLLKAVQQFPSPPS-HWLFGHKRELQKGDE-LQLLLKWIED 81
Query: 408 YPKGYMTWMGPITPLVILCHPDLIRTMANVSAAIASKDVVFYEVLKPWLGDGLLLSAGDK 587
+P + W+ +++ PD ++ + S K Y+++ PW+G GLLL G+
Sbjct: 82 FPCAFSRWIWGTEAEIMIYDPDYMKLILGRSDP---KPDGSYKLMAPWIGYGLLLLNGET 138
Query: 588 WSSHRRMLTPAFHFNILKPYMKIFSDSVNVMHAKWQRLVTEGHNRLDMFEHISLMTLDSL 767
WS HRRMLTPAFH++ILKPY+++ +DSV VM KW+ L+++ ++ L++F+H+SLMTLD++
Sbjct: 139 WSQHRRMLTPAFHYDILKPYVRLMADSVQVMLDKWEELLSQ-NSHLEIFDHVSLMTLDTI 197
Query: 768 QKCVFSFDSNCQ--EKPSEYIAAILELSALVAKRHQQIFLHKDFLYYLTPEGRRFRKACH 941
KC FS+ N Q YI AI +L+ LV R + +F KD Y LT EGRR KAC
Sbjct: 198 MKCAFSYQGNHQADRNSQAYIQAIRDLNNLVFARMRNVFYQKDIFYGLTSEGRRNHKACQ 257
Query: 942 LVHNFTDAVIQERRRSLPKEG 1004
L H TD VI+ R+ L +G
Sbjct: 258 LAHQHTDRVIKLRKAQLQDKG 278
Score = 30.0 bits (66), Expect(2) = 4e-48
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +2
Query: 1034 NAKTLDFIDVLLLTKDEDGKGL 1099
N + LDF+D+LL K E+G+GL
Sbjct: 285 NKRHLDFLDILLFAKVENGRGL 306
>ref|NP_001041490.1| cytochrome P450 4A37 [Canis lupus familiaris].
Length = 510
Score = 175 bits (444), Expect(2) = 8e-47
Identities = 103/261 (39%), Positives = 144/261 (55%), Gaps = 8/261 (3%)
Frame = +3
Query: 246 LMSRVLVWTYAAYNYSRH------LQSFPQPPKRNWFLGHLGLVPPTEQGLRDLTQLVTN 407
L+ L+ AA Y R +Q FP PP +WF GH T Q L+ +
Sbjct: 24 LLGLALLLLKAAQLYQRRQWLLKAVQQFPSPPS-HWFFGHKQEFQ-TGQELQVFQKWTEK 81
Query: 408 YPKGYMTWMGPITPLVILCHPDLIRTMANVSAAIASKDVVFYEVLKPWLGDGLLLSAGDK 587
YP W+ +++ PD ++ + S A F + PW+G GLLL G+
Sbjct: 82 YPCASPRWLWGSRVSLVVYDPDYMKMILGRSDPKAGGSYTF---ITPWIGYGLLLLHGEA 138
Query: 588 WSSHRRMLTPAFHFNILKPYMKIFSDSVNVMHAKWQRLVTEGHNRLDMFEHISLMTLDSL 767
W HRRMLTPAFH++ILKPY+++ +DSV VM KW+ L+T+ ++ L++FEH+SLMTLD++
Sbjct: 139 WFQHRRMLTPAFHYDILKPYVRLMADSVQVMLDKWEELLTQ-NSHLEIFEHVSLMTLDTI 197
Query: 768 QKCVFSFDSNCQ--EKPSEYIAAILELSALVAKRHQQIFLHKDFLYYLTPEGRRFRKACH 941
KC FS+ N Q YI AI +++ LV R + +F KD Y LT EGRR KA
Sbjct: 198 MKCAFSYQGNHQADRNSQAYIQAIRDMNNLVFARVRNVFYQKDIFYGLTSEGRRNHKARQ 257
Query: 942 LVHNFTDAVIQERRRSLPKEG 1004
+ H TD VI+ R+ L EG
Sbjct: 258 IAHQHTDRVIKLRKAQLQDEG 278
Score = 31.2 bits (69), Expect(2) = 8e-47
Identities = 13/22 (59%), Positives = 17/22 (77%)
Frame = +2
Query: 1034 NAKTLDFIDVLLLTKDEDGKGL 1099
N + LDF+D+LL K E+GKGL
Sbjct: 285 NKRHLDFLDILLFAKMENGKGL 306
>ref|XP_850244.1| PREDICTED: similar to cytochrome P450, family 4, subfamily B,
polypeptide 1 isoform 2 [Canis familiaris].
Length = 511
Score = 157 bits (396), Expect(2) = 8e-40
Identities = 87/241 (36%), Positives = 134/241 (55%), Gaps = 4/241 (1%)
Frame = +3
Query: 291 SRHLQSFPQPPKRNWFLGHLGLVPPTEQGLRDLTQLVT---NYPKGYMTWMGPITPLVIL 461
+R + SFP PP +W GH + T L ++VT Y + W+GP + +
Sbjct: 40 ARAMDSFPGPPT-HWLFGHAQEIQQTGS----LDKVVTWAHQYDYAHPLWLGPFLGFLNI 94
Query: 462 CHPDLIRTMANVSAAIASKDVVFYEVLKPWLGDGLLLSAGDKWSSHRRMLTPAFHFNILK 641
PD + + + A+ DV Y+ W+G GLL+ G KW HR++LTP FH+++LK
Sbjct: 95 YEPDYAKAVYSRGDPKAA-DV--YDFFLQWIGKGLLVLQGPKWYQHRKLLTPGFHYDVLK 151
Query: 642 PYMKIFSDSVNVMHAKWQRLVTEGHNRLDMFEHISLMTLDSLQKCVFSF-DSNCQEKPSE 818
Y+ +F++S + M KW+ E + D+F + M LDSL KC F DS+ + S
Sbjct: 152 SYVAVFTNSTHAMLDKWEEKAREDKS-FDIFCDVGYMALDSLMKCTFGKGDSSLGHRDSS 210
Query: 819 YIAAILELSALVAKRHQQIFLHKDFLYYLTPEGRRFRKACHLVHNFTDAVIQERRRSLPK 998
Y +A+ +L+ L+ +R + H DF+Y+LTP GRRF +AC H+ TD VI+ER+ +L
Sbjct: 211 YYSAVRDLTLLMQQRIESFQYHNDFIYWLTPHGRRFLRACQAAHDHTDQVIRERKAALQD 270
Query: 999 E 1001
E
Sbjct: 271 E 271
Score = 26.2 bits (56), Expect(2) = 8e-40
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = +2
Query: 1034 NAKTLDFIDVLLLTKDEDG 1090
N + LDF+D+LL +DE+G
Sbjct: 279 NRRHLDFLDILLGARDENG 297
>ref|NP_001193862.1| cytochrome P450 4X1 [Canis lupus familiaris].
Length = 507
Score = 157 bits (396), Expect = 2e-38
Identities = 85/238 (35%), Positives = 128/238 (53%), Gaps = 2/238 (0%)
Frame = +3
Query: 294 RHLQSFPQPPKRNWFLGHLGLVPPTEQGLRDLTQLVTNYPKGYMTWMGPITPLVILCHPD 473
R L FP PP +WF GH L+ + + L +LV YP + W+GP + PD
Sbjct: 41 RDLCPFPAPPT-HWFYGHQKLLQDGK--IEKLEELVEKYPCAFPYWVGPFQAFFYIYDPD 97
Query: 474 LIRTMANVSAAIASKDVVFYEVLKPWLGDGLLLSAGDKWSSHRRMLTPAFHFNILKPYMK 653
+T + K Y+ L P LG+GL+ G KW HR +LTP F+ NILK Y+K
Sbjct: 98 YAKTFLGRTDP---KSKYLYKFLIPCLGNGLVNLEGSKWFQHRCLLTPGFNVNILKSYIK 154
Query: 654 IFSDSVNVMHAKWQRLVTEGHNRLDMFEHISLMTLDSLQKCVFSFDSNCQEKPSE--YIA 827
+ + SVN M KW+++ +++FEHI+LMTLD L KC FS ++NCQ + Y+
Sbjct: 155 VMAHSVNTMLGKWEKICGTQDTVVEVFEHINLMTLDVLMKCAFSQETNCQISSNHDLYVK 214
Query: 828 AILELSALVAKRHQQIFLHKDFLYYLTPEGRRFRKACHLVHNFTDAVIQERRRSLPKE 1001
E S + R H D ++ +P+G R ++ ++H +T+ VIQ+R++ L E
Sbjct: 215 TTFEASKINFYRLYSFLHHHDIIFKFSPQGHRLQELVKILHQYTEKVIQDRKKLLKDE 272
>ref|XP_860991.1| PREDICTED: similar to cytochrome P450, family 4, subfamily B,
polypeptide 1 isoform 3 [Canis familiaris].
Length = 496
Score = 145 bits (367), Expect(2) = 2e-36
Identities = 84/241 (34%), Positives = 128/241 (53%), Gaps = 4/241 (1%)
Frame = +3
Query: 291 SRHLQSFPQPPKRNWFLGHLGLVPPTEQGLRDLTQLVT---NYPKGYMTWMGPITPLVIL 461
+R + SFP PP +W GH + T L ++VT Y + W+GP + +
Sbjct: 40 ARAMDSFPGPPT-HWLFGHAQEIQQTGS----LDKVVTWAHQYDYAHPLWLGPFLGFLNI 94
Query: 462 CHPDLIRTMANVSAAIASKDVVFYEVLKPWLGDGLLLSAGDKWSSHRRMLTPAFHFNILK 641
PD + A+ S+ G GLL+ G KW HR++LTP FH+++LK
Sbjct: 95 YEPDYAK-------AVYSRG-----------GKGLLVLQGPKWYQHRKLLTPGFHYDVLK 136
Query: 642 PYMKIFSDSVNVMHAKWQRLVTEGHNRLDMFEHISLMTLDSLQKCVFSF-DSNCQEKPSE 818
Y+ +F++S + M KW+ E + D+F + M LDSL KC F DS+ + S
Sbjct: 137 SYVAVFTNSTHAMLDKWEEKAREDKS-FDIFCDVGYMALDSLMKCTFGKGDSSLGHRDSS 195
Query: 819 YIAAILELSALVAKRHQQIFLHKDFLYYLTPEGRRFRKACHLVHNFTDAVIQERRRSLPK 998
Y +A+ +L+ L+ +R + H DF+Y+LTP GRRF +AC H+ TD VI+ER+ +L
Sbjct: 196 YYSAVRDLTLLMQQRIESFQYHNDFIYWLTPHGRRFLRACQAAHDHTDQVIRERKAALQD 255
Query: 999 E 1001
E
Sbjct: 256 E 256
Score = 26.2 bits (56), Expect(2) = 2e-36
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = +2
Query: 1034 NAKTLDFIDVLLLTKDEDG 1090
N + LDF+D+LL +DE+G
Sbjct: 264 NRRHLDFLDILLGARDENG 282
>ref|XP_849364.1| PREDICTED: similar to cytochrome P450, family 4, subfamily v,
polypeptide 2 [Canis familiaris].
Length = 575
Score = 119 bits (298), Expect = 5e-27
Identities = 79/251 (31%), Positives = 131/251 (52%), Gaps = 9/251 (3%)
Frame = +3
Query: 276 AAYNYSRH-LQSFPQPPKRNWFLGHLGLV-PPTEQGLRDLTQLVTNYPKG------YMTW 431
A+Y H +++FP P + H L+ PP + R+ Q V Y + W
Sbjct: 84 ASYAQKCHQMRAFPSLPGAYPLVEHSLLINPPGKVRGREFFQQVILYSEESRHLPLLKLW 143
Query: 432 MGPITPLVILCHPDLIRTMANVSAAIASKDVVFYEVLKPWLGDGLLLSAGDKWSSHRRML 611
+GPI P+V + + + + S I V Y+ L+PWLG GLL S G+KW S R+ML
Sbjct: 144 LGPI-PIVAIYSAENVEVILTSSRQIDKSYV--YKFLEPWLGLGLLTSTGNKWRSRRKML 200
Query: 612 TPAFHFNILKPYMKIFSDSVNVMHAKWQRLVTEGHNRLDMFEHISLMTLDSLQKCVFSFD 791
TP FHF IL+ ++ + ++ N++ K ++ V + + F +I+L LD + + +
Sbjct: 201 TPTFHFTILEDFLDVMNEHANILVNKLEKHVNQ--EAFNCFFYITLCALDIICETAMGKN 258
Query: 792 SNCQ-EKPSEYIAAILELSALVAKRHQQIFLHKDFLYYLTPEGRRFRKACHLVHNFTDAV 968
Q + SEY+ AI +S + +R + +L DFL+ + EGR ++ ++HNFT+ V
Sbjct: 259 IGAQNNEDSEYVRAIYRMSDTIHRRMKMPWLWLDFLFLMFKEGREHKRNLEILHNFTNNV 318
Query: 969 IQERRRSLPKE 1001
I ER L ++
Sbjct: 319 ITERASELKRD 329
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 51,280,920
Number of extensions: 1594992
Number of successful extensions: 6512
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 6487
Number of HSP's successfully gapped: 17
Length of query: 367
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 263
Effective length of database: 15,407,560
Effective search space: 4052188280
Effective search space used: 4052188280
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003991
(1101 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001122404.1| cytochrome P450 4F11 [Homo sapiens]. 449 e-126
Alignment gi|NP_067010.3| cytochrome P450 4F11 [Homo sapiens]. 449 e-126
Alignment gi|NP_001073.3| leukotriene-B(4) omega-hydroxylase 1 [Homo sapi... 448 e-126
Alignment gi|NP_001186138.1| leukotriene-B(4) omega-hydroxylase 2 isoform... 445 e-125
Alignment gi|NP_001186137.1| leukotriene-B(4) omega-hydroxylase 2 isoform... 445 e-125
Alignment gi|NP_009184.1| cytochrome P450 4F8 [Homo sapiens]. 437 e-122
Alignment gi|NP_076433.3| cytochrome P450 4F12 [Homo sapiens]. 408 e-114
Alignment gi|NP_000887.2| leukotriene-B(4) omega-hydroxylase 2 isoform a ... 397 e-111
Alignment gi|NP_775754.2| cytochrome P450 4F22 [Homo sapiens]. 315 2e-90
Alignment gi|NP_828847.1| cytochrome P450 4X1 [Homo sapiens]. 172 1e-43
>ref|NP_001122404.1| cytochrome P450 4F11 [Homo sapiens].
Length = 524
Score = 449 bits (1156), Expect = e-126
Identities = 210/283 (74%), Positives = 239/283 (84%)
Frame = +3
Query: 159 MLQLSVSWLGLETVAASPWXXXXXVGASWLMSRVLVWTYAAYNYSRHLQSFPQPPKRNWF 338
M QLS+SWLGL VAASPW VG SWL++RVL WTY Y+ R LQ FPQPPK+NWF
Sbjct: 1 MPQLSLSWLGLGPVAASPWLLLLLVGGSWLLARVLAWTYTFYDNCRRLQCFPQPPKQNWF 60
Query: 339 LGHLGLVPPTEQGLRDLTQLVTNYPKGYMTWMGPITPLVILCHPDLIRTMANVSAAIASK 518
GH GLV PTE+G++ LTQLVT YP+G+ W+GP PL+ILCHPD+IR + + SAA+A K
Sbjct: 61 WGHQGLVTPTEEGMKTLTQLVTTYPQGFKLWLGPTFPLLILCHPDIIRPITSASAAVAPK 120
Query: 519 DVVFYEVLKPWLGDGLLLSAGDKWSSHRRMLTPAFHFNILKPYMKIFSDSVNVMHAKWQR 698
D++FY LKPWLGDGLLLS GDKWS HRRMLTPAFHFNILKPYMKIF+ SVN+MH KWQR
Sbjct: 121 DMIFYGFLKPWLGDGLLLSGGDKWSRHRRMLTPAFHFNILKPYMKIFNKSVNIMHDKWQR 180
Query: 699 LVTEGHNRLDMFEHISLMTLDSLQKCVFSFDSNCQEKPSEYIAAILELSALVAKRHQQIF 878
L +EG RLDMFEHISLMTLDSLQKCVFSF+SNCQEKPSEYIAAILELSA V KR+QQI
Sbjct: 181 LASEGSARLDMFEHISLMTLDSLQKCVFSFESNCQEKPSEYIAAILELSAFVEKRNQQIL 240
Query: 879 LHKDFLYYLTPEGRRFRKACHLVHNFTDAVIQERRRSLPKEGI 1007
LH DFLYYLTP+G+RFR+ACHLVH+FTDAVIQERR +LP +GI
Sbjct: 241 LHTDFLYYLTPDGQRFRRACHLVHDFTDAVIQERRCTLPTQGI 283
>ref|NP_067010.3| cytochrome P450 4F11 [Homo sapiens].
Length = 524
Score = 449 bits (1156), Expect = e-126
Identities = 210/283 (74%), Positives = 239/283 (84%)
Frame = +3
Query: 159 MLQLSVSWLGLETVAASPWXXXXXVGASWLMSRVLVWTYAAYNYSRHLQSFPQPPKRNWF 338
M QLS+SWLGL VAASPW VG SWL++RVL WTY Y+ R LQ FPQPPK+NWF
Sbjct: 1 MPQLSLSWLGLGPVAASPWLLLLLVGGSWLLARVLAWTYTFYDNCRRLQCFPQPPKQNWF 60
Query: 339 LGHLGLVPPTEQGLRDLTQLVTNYPKGYMTWMGPITPLVILCHPDLIRTMANVSAAIASK 518
GH GLV PTE+G++ LTQLVT YP+G+ W+GP PL+ILCHPD+IR + + SAA+A K
Sbjct: 61 WGHQGLVTPTEEGMKTLTQLVTTYPQGFKLWLGPTFPLLILCHPDIIRPITSASAAVAPK 120
Query: 519 DVVFYEVLKPWLGDGLLLSAGDKWSSHRRMLTPAFHFNILKPYMKIFSDSVNVMHAKWQR 698
D++FY LKPWLGDGLLLS GDKWS HRRMLTPAFHFNILKPYMKIF+ SVN+MH KWQR
Sbjct: 121 DMIFYGFLKPWLGDGLLLSGGDKWSRHRRMLTPAFHFNILKPYMKIFNKSVNIMHDKWQR 180
Query: 699 LVTEGHNRLDMFEHISLMTLDSLQKCVFSFDSNCQEKPSEYIAAILELSALVAKRHQQIF 878
L +EG RLDMFEHISLMTLDSLQKCVFSF+SNCQEKPSEYIAAILELSA V KR+QQI
Sbjct: 181 LASEGSARLDMFEHISLMTLDSLQKCVFSFESNCQEKPSEYIAAILELSAFVEKRNQQIL 240
Query: 879 LHKDFLYYLTPEGRRFRKACHLVHNFTDAVIQERRRSLPKEGI 1007
LH DFLYYLTP+G+RFR+ACHLVH+FTDAVIQERR +LP +GI
Sbjct: 241 LHTDFLYYLTPDGQRFRRACHLVHDFTDAVIQERRCTLPTQGI 283
>ref|NP_001073.3| leukotriene-B(4) omega-hydroxylase 1 [Homo sapiens].
Length = 520
Score = 448 bits (1153), Expect = e-126
Identities = 210/283 (74%), Positives = 241/283 (85%)
Frame = +3
Query: 159 MLQLSVSWLGLETVAASPWXXXXXVGASWLMSRVLVWTYAAYNYSRHLQSFPQPPKRNWF 338
M QLS+SWLGL VAASPW VGASWL++ VL WTYA Y+ R L+ FPQPP+RNWF
Sbjct: 1 MSQLSLSWLGLWPVAASPWLLLLLVGASWLLAHVLAWTYAFYDNCRRLRCFPQPPRRNWF 60
Query: 339 LGHLGLVPPTEQGLRDLTQLVTNYPKGYMTWMGPITPLVILCHPDLIRTMANVSAAIASK 518
GH G+V PTE+G+R LTQLV YP+G+ WMGPI+PL+ LCHPD+IR++ N SAAIA K
Sbjct: 61 WGHQGMVNPTEEGMRVLTQLVATYPQGFKVWMGPISPLLSLCHPDIIRSVINASAAIAPK 120
Query: 519 DVVFYEVLKPWLGDGLLLSAGDKWSSHRRMLTPAFHFNILKPYMKIFSDSVNVMHAKWQR 698
D FY L+PWLGDGLLLSAGDKWS HRRMLTPAFHFNILKPYMKIF++SVN+MHAKWQ
Sbjct: 121 DKFFYSFLEPWLGDGLLLSAGDKWSRHRRMLTPAFHFNILKPYMKIFNESVNIMHAKWQL 180
Query: 699 LVTEGHNRLDMFEHISLMTLDSLQKCVFSFDSNCQEKPSEYIAAILELSALVAKRHQQIF 878
L +EG LDMFEHISLMTLDSLQKCVFSFDS+CQEKPSEYIAAILELSALV+KRH +I
Sbjct: 181 LASEGSACLDMFEHISLMTLDSLQKCVFSFDSHCQEKPSEYIAAILELSALVSKRHHEIL 240
Query: 879 LHKDFLYYLTPEGRRFRKACHLVHNFTDAVIQERRRSLPKEGI 1007
LH DFLYYLTP+G+RFR+AC LVH+FTDAVIQERRR+LP +G+
Sbjct: 241 LHIDFLYYLTPDGQRFRRACRLVHDFTDAVIQERRRTLPSQGV 283
>ref|NP_001186138.1| leukotriene-B(4) omega-hydroxylase 2 isoform b [Homo sapiens].
Length = 520
Score = 445 bits (1144), Expect = e-125
Identities = 210/283 (74%), Positives = 240/283 (84%)
Frame = +3
Query: 159 MLQLSVSWLGLETVAASPWXXXXXVGASWLMSRVLVWTYAAYNYSRHLQSFPQPPKRNWF 338
M QLS+S LGL +AASPW VGASWL++R+L WTY Y+ L+ FPQPPKRNWF
Sbjct: 1 MPQLSLSSLGLWPMAASPWLLLLLVGASWLLARILAWTYTFYDNCCRLRCFPQPPKRNWF 60
Query: 339 LGHLGLVPPTEQGLRDLTQLVTNYPKGYMTWMGPITPLVILCHPDLIRTMANVSAAIASK 518
LGHLGLV PTEQG+R LTQLV YP+G+ WMGPI P++ CHP++IR++ N SAAI K
Sbjct: 61 LGHLGLVTPTEQGMRVLTQLVATYPQGFKVWMGPIFPVIRFCHPNIIRSVINASAAIVPK 120
Query: 519 DVVFYEVLKPWLGDGLLLSAGDKWSSHRRMLTPAFHFNILKPYMKIFSDSVNVMHAKWQR 698
D VFY LKPWLGDGLLLSAG+KWS HRRMLTPAFHFNILKPYMKIF++SVN+MHAKWQ
Sbjct: 121 DKVFYSFLKPWLGDGLLLSAGEKWSRHRRMLTPAFHFNILKPYMKIFNESVNIMHAKWQL 180
Query: 699 LVTEGHNRLDMFEHISLMTLDSLQKCVFSFDSNCQEKPSEYIAAILELSALVAKRHQQIF 878
L +EG RLDMFEHISLMTLDSLQKCVFSFDS+CQEKPSEYIAAILELSALV KRHQQI
Sbjct: 181 LASEGSARLDMFEHISLMTLDSLQKCVFSFDSHCQEKPSEYIAAILELSALVTKRHQQIL 240
Query: 879 LHKDFLYYLTPEGRRFRKACHLVHNFTDAVIQERRRSLPKEGI 1007
L+ DFLYYLTP+G+RFR+AC LVH+FTDAVIQERRR+LP +G+
Sbjct: 241 LYIDFLYYLTPDGQRFRRACRLVHDFTDAVIQERRRTLPSQGV 283
>ref|NP_001186137.1| leukotriene-B(4) omega-hydroxylase 2 isoform b [Homo sapiens].
Length = 520
Score = 445 bits (1144), Expect = e-125
Identities = 210/283 (74%), Positives = 240/283 (84%)
Frame = +3
Query: 159 MLQLSVSWLGLETVAASPWXXXXXVGASWLMSRVLVWTYAAYNYSRHLQSFPQPPKRNWF 338
M QLS+S LGL +AASPW VGASWL++R+L WTY Y+ L+ FPQPPKRNWF
Sbjct: 1 MPQLSLSSLGLWPMAASPWLLLLLVGASWLLARILAWTYTFYDNCCRLRCFPQPPKRNWF 60
Query: 339 LGHLGLVPPTEQGLRDLTQLVTNYPKGYMTWMGPITPLVILCHPDLIRTMANVSAAIASK 518
LGHLGLV PTEQG+R LTQLV YP+G+ WMGPI P++ CHP++IR++ N SAAI K
Sbjct: 61 LGHLGLVTPTEQGMRVLTQLVATYPQGFKVWMGPIFPVIRFCHPNIIRSVINASAAIVPK 120
Query: 519 DVVFYEVLKPWLGDGLLLSAGDKWSSHRRMLTPAFHFNILKPYMKIFSDSVNVMHAKWQR 698
D VFY LKPWLGDGLLLSAG+KWS HRRMLTPAFHFNILKPYMKIF++SVN+MHAKWQ
Sbjct: 121 DKVFYSFLKPWLGDGLLLSAGEKWSRHRRMLTPAFHFNILKPYMKIFNESVNIMHAKWQL 180
Query: 699 LVTEGHNRLDMFEHISLMTLDSLQKCVFSFDSNCQEKPSEYIAAILELSALVAKRHQQIF 878
L +EG RLDMFEHISLMTLDSLQKCVFSFDS+CQEKPSEYIAAILELSALV KRHQQI
Sbjct: 181 LASEGSARLDMFEHISLMTLDSLQKCVFSFDSHCQEKPSEYIAAILELSALVTKRHQQIL 240
Query: 879 LHKDFLYYLTPEGRRFRKACHLVHNFTDAVIQERRRSLPKEGI 1007
L+ DFLYYLTP+G+RFR+AC LVH+FTDAVIQERRR+LP +G+
Sbjct: 241 LYIDFLYYLTPDGQRFRRACRLVHDFTDAVIQERRRTLPSQGV 283
>ref|NP_009184.1| cytochrome P450 4F8 [Homo sapiens].
Length = 520
Score = 437 bits (1123), Expect = e-122
Identities = 201/283 (71%), Positives = 235/283 (83%)
Frame = +3
Query: 159 MLQLSVSWLGLETVAASPWXXXXXVGASWLMSRVLVWTYAAYNYSRHLQSFPQPPKRNWF 338
M LS+SWLGL VAASPW VGASWL++R+L WTYA Y+ R L+ FPQP K+NWF
Sbjct: 1 MSLLSLSWLGLRPVAASPWLLLLVVGASWLLARILAWTYAFYHNGRRLRCFPQPRKQNWF 60
Query: 339 LGHLGLVPPTEQGLRDLTQLVTNYPKGYMTWMGPITPLVILCHPDLIRTMANVSAAIASK 518
LGHLGLV PTE+GLR LTQLV YP+G++ W+GPITP++ LCHPD++R++ N S AI K
Sbjct: 61 LGHLGLVTPTEEGLRVLTQLVATYPQGFVRWLGPITPIINLCHPDIVRSVINTSDAITDK 120
Query: 519 DVVFYEVLKPWLGDGLLLSAGDKWSSHRRMLTPAFHFNILKPYMKIFSDSVNVMHAKWQR 698
D+VFY+ LKPWLGDGLLLS GDKW HRR+LTPAFHFNILKPY+KIFS S N+MHAKWQR
Sbjct: 121 DIVFYKTLKPWLGDGLLLSVGDKWRHHRRLLTPAFHFNILKPYIKIFSKSANIMHAKWQR 180
Query: 699 LVTEGHNRLDMFEHISLMTLDSLQKCVFSFDSNCQEKPSEYIAAILELSALVAKRHQQIF 878
L EG LD+FEHISLMTLDSLQKC+FSFDSNCQEKPSEYI AI+ELSALV KR+ Q F
Sbjct: 181 LAMEGSTCLDVFEHISLMTLDSLQKCIFSFDSNCQEKPSEYITAIMELSALVVKRNNQFF 240
Query: 879 LHKDFLYYLTPEGRRFRKACHLVHNFTDAVIQERRRSLPKEGI 1007
+KDFLY+LTP GRRF +AC LVH+FTDAVIQERRR+L +G+
Sbjct: 241 RYKDFLYFLTPCGRRFHRACRLVHDFTDAVIQERRRTLTSQGV 283
>ref|NP_076433.3| cytochrome P450 4F12 [Homo sapiens].
Length = 524
Score = 408 bits (1048), Expect = e-114
Identities = 189/283 (66%), Positives = 223/283 (78%)
Frame = +3
Query: 159 MLQLSVSWLGLETVAASPWXXXXXVGASWLMSRVLVWTYAAYNYSRHLQSFPQPPKRNWF 338
M LS+ WLGL VA SPW V SWL++R+L WTYA YN R LQ FPQPPKRNWF
Sbjct: 1 MSLLSLPWLGLRPVATSPWLLLLLVVGSWLLARILAWTYAFYNNCRRLQCFPQPPKRNWF 60
Query: 339 LGHLGLVPPTEQGLRDLTQLVTNYPKGYMTWMGPITPLVILCHPDLIRTMANVSAAIASK 518
GHLGL+ PTE+GL++ TQ+ Y +G+ W+GPI P ++LCHPD IR++ N SAAIA K
Sbjct: 61 WGHLGLITPTEEGLKNSTQMSATYSQGFTVWLGPIIPFIVLCHPDTIRSITNASAAIAPK 120
Query: 519 DVVFYEVLKPWLGDGLLLSAGDKWSSHRRMLTPAFHFNILKPYMKIFSDSVNVMHAKWQR 698
D +F LKPWLG+G+LLS GDKWS HRRMLTPAFHFNILK Y+ IF+ S N+M KWQ
Sbjct: 121 DNLFIRFLKPWLGEGILLSGGDKWSRHRRMLTPAFHFNILKSYITIFNKSANIMLDKWQH 180
Query: 699 LVTEGHNRLDMFEHISLMTLDSLQKCVFSFDSNCQEKPSEYIAAILELSALVAKRHQQIF 878
L +EG +RLDMFEHISLMTLDSLQKC+FSFDS+CQE+PSEYIA ILELSALV KR Q I
Sbjct: 181 LASEGSSRLDMFEHISLMTLDSLQKCIFSFDSHCQERPSEYIATILELSALVEKRSQHIL 240
Query: 879 LHKDFLYYLTPEGRRFRKACHLVHNFTDAVIQERRRSLPKEGI 1007
H DFLYYL+ +GRRF +AC LVH+FTDAVI+ERRR+LP +GI
Sbjct: 241 QHMDFLYYLSHDGRRFHRACRLVHDFTDAVIRERRRTLPTQGI 283
>ref|NP_000887.2| leukotriene-B(4) omega-hydroxylase 2 isoform a [Homo sapiens].
Length = 520
Score = 397 bits (1020), Expect = e-111
Identities = 193/283 (68%), Positives = 223/283 (78%)
Frame = +3
Query: 159 MLQLSVSWLGLETVAASPWXXXXXVGASWLMSRVLVWTYAAYNYSRHLQSFPQPPKRNWF 338
M QLS+S LGL +AASPW VGASWL++R+L WTY Y+ L+ FPQPPKRNWF
Sbjct: 1 MPQLSLSSLGLWPMAASPWLLLLLVGASWLLARILAWTYTFYDNCCRLRCFPQPPKRNWF 60
Query: 339 LGHLGLVPPTEQGLRDLTQLVTNYPKGYMTWMGPITPLVILCHPDLIRTMANVSAAIASK 518
LGHLGL+ +E+GL L + W+GP +V + HP I+ + AAI K
Sbjct: 61 LGHLGLIHSSEEGLLYTQSLACTFGDMCCWWVGPWHAIVRIFHPTYIKPVLFAPAAIVPK 120
Query: 519 DVVFYEVLKPWLGDGLLLSAGDKWSSHRRMLTPAFHFNILKPYMKIFSDSVNVMHAKWQR 698
D VFY LKPWLGDGLLLSAG+KWS HRRMLTPAFHFNILKPYMKIF++SVN+MHAKWQ
Sbjct: 121 DKVFYSFLKPWLGDGLLLSAGEKWSRHRRMLTPAFHFNILKPYMKIFNESVNIMHAKWQL 180
Query: 699 LVTEGHNRLDMFEHISLMTLDSLQKCVFSFDSNCQEKPSEYIAAILELSALVAKRHQQIF 878
L +EG RLDMFEHISLMTLDSLQKCVFSFDS+CQEKPSEYIAAILELSALV KRHQQI
Sbjct: 181 LASEGSARLDMFEHISLMTLDSLQKCVFSFDSHCQEKPSEYIAAILELSALVTKRHQQIL 240
Query: 879 LHKDFLYYLTPEGRRFRKACHLVHNFTDAVIQERRRSLPKEGI 1007
L+ DFLYYLTP+G+RFR+AC LVH+FTDAVIQERRR+LP +G+
Sbjct: 241 LYIDFLYYLTPDGQRFRRACRLVHDFTDAVIQERRRTLPSQGV 283
>ref|NP_775754.2| cytochrome P450 4F22 [Homo sapiens].
Length = 531
Score = 315 bits (807), Expect(2) = 2e-90
Identities = 150/253 (59%), Positives = 190/253 (75%)
Frame = +3
Query: 246 LMSRVLVWTYAAYNYSRHLQSFPQPPKRNWFLGHLGLVPPTEQGLRDLTQLVTNYPKGYM 425
L+ R L + Y R L+ FPQPP+RNW LGHLG+ P E GL+D +++ N +
Sbjct: 38 LLLRFLRLCRSFYITCRRLRCFPQPPRRNWLLGHLGMYLPNEAGLQDEKKVLDNMHHVLL 97
Query: 426 TWMGPITPLVILCHPDLIRTMANVSAAIASKDVVFYEVLKPWLGDGLLLSAGDKWSSHRR 605
WMGP+ PL++L HPD I+ + SAAIA KD +FY LKPWLGDGLLLS GDKWS HRR
Sbjct: 98 VWMGPVLPLLVLVHPDYIKPLLGASAAIAPKDDLFYGFLKPWLGDGLLLSKGDKWSRHRR 157
Query: 606 MLTPAFHFNILKPYMKIFSDSVNVMHAKWQRLVTEGHNRLDMFEHISLMTLDSLQKCVFS 785
+LTPAFHF+ILKPYMKIF+ S ++MHAKW+ L LDMFEHISLMTLDSLQKCVFS
Sbjct: 158 LLTPAFHFDILKPYMKIFNQSADIMHAKWRHLAEGSAVSLDMFEHISLMTLDSLQKCVFS 217
Query: 786 FDSNCQEKPSEYIAAILELSALVAKRHQQIFLHKDFLYYLTPEGRRFRKACHLVHNFTDA 965
++SNCQEK S+YI+AI+ELSAL +R ++ + DF+YY + +GRRFR+AC +VH+FT
Sbjct: 218 YNSNCQEKMSDYISAIIELSALSVRRQYRLHHYLDFIYYRSADGRRFRQACDMVHHFTTE 277
Query: 966 VIQERRRSLPKEG 1004
VIQERRR+L ++G
Sbjct: 278 VIQERRRALRQQG 290
Score = 37.0 bits (84), Expect(2) = 2e-90
Identities = 17/20 (85%), Positives = 18/20 (90%)
Frame = +2
Query: 1040 KTLDFIDVLLLTKDEDGKGL 1099
KTLDFIDVLLL +DEDGK L
Sbjct: 301 KTLDFIDVLLLARDEDGKEL 320
>ref|NP_828847.1| cytochrome P450 4X1 [Homo sapiens].
Length = 509
Score = 172 bits (436), Expect(2) = 1e-43
Identities = 84/235 (35%), Positives = 136/235 (57%), Gaps = 2/235 (0%)
Frame = +3
Query: 294 RHLQSFPQPPKRNWFLGHLGLVPPTEQGLRDLTQLVTNYPKGYMTWMGPITPLVILCHPD 473
R L+ FP PP +WFLGH + + + L +++ YP+ + W+GP + PD
Sbjct: 41 RDLRPFPAPPT-HWFLGHQKFIQ--DDNMEKLEEIIEKYPRAFPFWIGPFQAFFCIYDPD 97
Query: 474 LIRTMANVSAAIASKDVVFYEVLKPWLGDGLLLSAGDKWSSHRRMLTPAFHFNILKPYMK 653
+T+ + + K + P LG GL G KW HRR+LTP FHFNILK Y++
Sbjct: 98 YAKTLLSRTDP---KSQYLQKFSPPLLGKGLAALDGPKWFQHRRLLTPGFHFNILKAYIE 154
Query: 654 IFSDSVNVMHAKWQRLVTEGHNRLDMFEHISLMTLDSLQKCVFSFDSNCQEKPSE--YIA 827
+ + SV +M KW+++ + ++++EHI+ M+LD + KC FS ++NCQ + Y
Sbjct: 155 VMAHSVKMMLDKWEKICSTQDTSVEVYEHINSMSLDIIMKCAFSKETNCQTNSTHDPYAK 214
Query: 828 AILELSALVAKRHQQIFLHKDFLYYLTPEGRRFRKACHLVHNFTDAVIQERRRSL 992
AI ELS ++ R + H D ++ L+P+G RF+K +++ +TD +IQER++SL
Sbjct: 215 AIFELSKIIFHRLYSLLYHSDIIFKLSPQGYRFQKLSRVLNQYTDTIIQERKKSL 269
Score = 23.5 bits (49), Expect(2) = 1e-43
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +2
Query: 1040 KTLDFIDVLLLTKDEDG 1090
K DF+D++L KDE G
Sbjct: 282 KYQDFLDIVLSAKDESG 298
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 50,389,610
Number of extensions: 1565975
Number of successful extensions: 6516
Number of sequences better than 1.0e-05: 16
Number of HSP's gapped: 6478
Number of HSP's successfully gapped: 22
Length of query: 367
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 263
Effective length of database: 14,868,908
Effective search space: 3910522804
Effective search space used: 3910522804
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003991
(1101 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001191265.1| leukotriene-B4 omega-hydroxylase 3 [Mus musc... 432 e-127
Alignment gi|NP_001191264.1| leukotriene-B4 omega-hydroxylase 3 [Mus musc... 432 e-127
Alignment gi|NP_001191263.1| leukotriene-B4 omega-hydroxylase 3 [Mus musc... 432 e-127
Alignment gi|NP_001191262.1| leukotriene-B4 omega-hydroxylase 3 [Mus musc... 432 e-127
Alignment gi|NP_071879.1| leukotriene-B4 omega-hydroxylase 3 [Mus musculu... 432 e-127
Alignment gi|NP_598888.1| cytochrome P450, family 4, subfamily f, polypep... 425 e-119
Alignment gi|NP_001095058.1| cytochrome P450, family 4, subfamily f, poly... 407 e-114
Alignment gi|NP_077764.2| leukotriene-B(4) omega-hydroxylase 2 [Mus muscu... 372 e-109
Alignment gi|NP_570952.1| cytochrome P450, family 4, subfamily f, polypep... 369 e-107
Alignment gi|NP_001094915.1| cytochrome P450, family 4, subfamily f, poly... 360 e-104
>ref|NP_001191265.1| leukotriene-B4 omega-hydroxylase 3 [Mus musculus].
Length = 524
Score = 432 bits (1111), Expect(2) = e-127
Identities = 195/283 (68%), Positives = 238/283 (84%)
Frame = +3
Query: 159 MLQLSVSWLGLETVAASPWXXXXXVGASWLMSRVLVWTYAAYNYSRHLQSFPQPPKRNWF 338
M QLS+SWLGL A PW +GASW+++R+L+ YAAY RHL FPQPPKRNW
Sbjct: 1 MSQLSLSWLGLGPEVAFPWKTLLLLGASWILARILIQIYAAYRNYRHLHGFPQPPKRNWL 60
Query: 339 LGHLGLVPPTEQGLRDLTQLVTNYPKGYMTWMGPITPLVILCHPDLIRTMANVSAAIASK 518
+GH+G+V PTEQGL++LT+LV YP+G++ W+GP+ P++ LCH D++R++ N SAA+A K
Sbjct: 61 MGHVGMVTPTEQGLKELTRLVGTYPQGFLMWIGPMVPVITLCHSDIVRSILNASAAVALK 120
Query: 519 DVVFYEVLKPWLGDGLLLSAGDKWSSHRRMLTPAFHFNILKPYMKIFSDSVNVMHAKWQR 698
DV+FY +LKPWLGDGLL+SAGDKWS HRRMLTPAFHFNILKPY+KIF+DS N+MHAKWQR
Sbjct: 121 DVIFYSILKPWLGDGLLVSAGDKWSRHRRMLTPAFHFNILKPYVKIFNDSTNIMHAKWQR 180
Query: 699 LVTEGHNRLDMFEHISLMTLDSLQKCVFSFDSNCQEKPSEYIAAILELSALVAKRHQQIF 878
L+++G RLDMFEH+SLMTLDSLQKCVFSFDSNCQEK SEYIAAILELSALVAKRHQQ
Sbjct: 181 LISDGSARLDMFEHVSLMTLDSLQKCVFSFDSNCQEKSSEYIAAILELSALVAKRHQQPL 240
Query: 879 LHKDFLYYLTPEGRRFRKACHLVHNFTDAVIQERRRSLPKEGI 1007
+ D LY LTP+G RFRKAC++VH FTDAVI+ER R+LP +G+
Sbjct: 241 MFMDLLYNLTPDGMRFRKACNVVHEFTDAVIRERHRTLPDQGL 283
Score = 42.7 bits (99), Expect(2) = e-127
Identities = 20/26 (76%), Positives = 23/26 (88%)
Frame = +2
Query: 1022 RPKANAKTLDFIDVLLLTKDEDGKGL 1099
+ KA +KTLDFIDVLLL+KDEDGK L
Sbjct: 288 KSKAKSKTLDFIDVLLLSKDEDGKEL 313
>ref|NP_001191264.1| leukotriene-B4 omega-hydroxylase 3 [Mus musculus].
Length = 524
Score = 432 bits (1111), Expect(2) = e-127
Identities = 195/283 (68%), Positives = 238/283 (84%)
Frame = +3
Query: 159 MLQLSVSWLGLETVAASPWXXXXXVGASWLMSRVLVWTYAAYNYSRHLQSFPQPPKRNWF 338
M QLS+SWLGL A PW +GASW+++R+L+ YAAY RHL FPQPPKRNW
Sbjct: 1 MSQLSLSWLGLGPEVAFPWKTLLLLGASWILARILIQIYAAYRNYRHLHGFPQPPKRNWL 60
Query: 339 LGHLGLVPPTEQGLRDLTQLVTNYPKGYMTWMGPITPLVILCHPDLIRTMANVSAAIASK 518
+GH+G+V PTEQGL++LT+LV YP+G++ W+GP+ P++ LCH D++R++ N SAA+A K
Sbjct: 61 MGHVGMVTPTEQGLKELTRLVGTYPQGFLMWIGPMVPVITLCHSDIVRSILNASAAVALK 120
Query: 519 DVVFYEVLKPWLGDGLLLSAGDKWSSHRRMLTPAFHFNILKPYMKIFSDSVNVMHAKWQR 698
DV+FY +LKPWLGDGLL+SAGDKWS HRRMLTPAFHFNILKPY+KIF+DS N+MHAKWQR
Sbjct: 121 DVIFYSILKPWLGDGLLVSAGDKWSRHRRMLTPAFHFNILKPYVKIFNDSTNIMHAKWQR 180
Query: 699 LVTEGHNRLDMFEHISLMTLDSLQKCVFSFDSNCQEKPSEYIAAILELSALVAKRHQQIF 878
L+++G RLDMFEH+SLMTLDSLQKCVFSFDSNCQEK SEYIAAILELSALVAKRHQQ
Sbjct: 181 LISDGSARLDMFEHVSLMTLDSLQKCVFSFDSNCQEKSSEYIAAILELSALVAKRHQQPL 240
Query: 879 LHKDFLYYLTPEGRRFRKACHLVHNFTDAVIQERRRSLPKEGI 1007
+ D LY LTP+G RFRKAC++VH FTDAVI+ER R+LP +G+
Sbjct: 241 MFMDLLYNLTPDGMRFRKACNVVHEFTDAVIRERHRTLPDQGL 283
Score = 42.7 bits (99), Expect(2) = e-127
Identities = 20/26 (76%), Positives = 23/26 (88%)
Frame = +2
Query: 1022 RPKANAKTLDFIDVLLLTKDEDGKGL 1099
+ KA +KTLDFIDVLLL+KDEDGK L
Sbjct: 288 KSKAKSKTLDFIDVLLLSKDEDGKEL 313
>ref|NP_001191263.1| leukotriene-B4 omega-hydroxylase 3 [Mus musculus].
Length = 524
Score = 432 bits (1111), Expect(2) = e-127
Identities = 195/283 (68%), Positives = 238/283 (84%)
Frame = +3
Query: 159 MLQLSVSWLGLETVAASPWXXXXXVGASWLMSRVLVWTYAAYNYSRHLQSFPQPPKRNWF 338
M QLS+SWLGL A PW +GASW+++R+L+ YAAY RHL FPQPPKRNW
Sbjct: 1 MSQLSLSWLGLGPEVAFPWKTLLLLGASWILARILIQIYAAYRNYRHLHGFPQPPKRNWL 60
Query: 339 LGHLGLVPPTEQGLRDLTQLVTNYPKGYMTWMGPITPLVILCHPDLIRTMANVSAAIASK 518
+GH+G+V PTEQGL++LT+LV YP+G++ W+GP+ P++ LCH D++R++ N SAA+A K
Sbjct: 61 MGHVGMVTPTEQGLKELTRLVGTYPQGFLMWIGPMVPVITLCHSDIVRSILNASAAVALK 120
Query: 519 DVVFYEVLKPWLGDGLLLSAGDKWSSHRRMLTPAFHFNILKPYMKIFSDSVNVMHAKWQR 698
DV+FY +LKPWLGDGLL+SAGDKWS HRRMLTPAFHFNILKPY+KIF+DS N+MHAKWQR
Sbjct: 121 DVIFYSILKPWLGDGLLVSAGDKWSRHRRMLTPAFHFNILKPYVKIFNDSTNIMHAKWQR 180
Query: 699 LVTEGHNRLDMFEHISLMTLDSLQKCVFSFDSNCQEKPSEYIAAILELSALVAKRHQQIF 878
L+++G RLDMFEH+SLMTLDSLQKCVFSFDSNCQEK SEYIAAILELSALVAKRHQQ
Sbjct: 181 LISDGSARLDMFEHVSLMTLDSLQKCVFSFDSNCQEKSSEYIAAILELSALVAKRHQQPL 240
Query: 879 LHKDFLYYLTPEGRRFRKACHLVHNFTDAVIQERRRSLPKEGI 1007
+ D LY LTP+G RFRKAC++VH FTDAVI+ER R+LP +G+
Sbjct: 241 MFMDLLYNLTPDGMRFRKACNVVHEFTDAVIRERHRTLPDQGL 283
Score = 42.7 bits (99), Expect(2) = e-127
Identities = 20/26 (76%), Positives = 23/26 (88%)
Frame = +2
Query: 1022 RPKANAKTLDFIDVLLLTKDEDGKGL 1099
+ KA +KTLDFIDVLLL+KDEDGK L
Sbjct: 288 KSKAKSKTLDFIDVLLLSKDEDGKEL 313
>ref|NP_001191262.1| leukotriene-B4 omega-hydroxylase 3 [Mus musculus].
Length = 524
Score = 432 bits (1111), Expect(2) = e-127
Identities = 195/283 (68%), Positives = 238/283 (84%)
Frame = +3
Query: 159 MLQLSVSWLGLETVAASPWXXXXXVGASWLMSRVLVWTYAAYNYSRHLQSFPQPPKRNWF 338
M QLS+SWLGL A PW +GASW+++R+L+ YAAY RHL FPQPPKRNW
Sbjct: 1 MSQLSLSWLGLGPEVAFPWKTLLLLGASWILARILIQIYAAYRNYRHLHGFPQPPKRNWL 60
Query: 339 LGHLGLVPPTEQGLRDLTQLVTNYPKGYMTWMGPITPLVILCHPDLIRTMANVSAAIASK 518
+GH+G+V PTEQGL++LT+LV YP+G++ W+GP+ P++ LCH D++R++ N SAA+A K
Sbjct: 61 MGHVGMVTPTEQGLKELTRLVGTYPQGFLMWIGPMVPVITLCHSDIVRSILNASAAVALK 120
Query: 519 DVVFYEVLKPWLGDGLLLSAGDKWSSHRRMLTPAFHFNILKPYMKIFSDSVNVMHAKWQR 698
DV+FY +LKPWLGDGLL+SAGDKWS HRRMLTPAFHFNILKPY+KIF+DS N+MHAKWQR
Sbjct: 121 DVIFYSILKPWLGDGLLVSAGDKWSRHRRMLTPAFHFNILKPYVKIFNDSTNIMHAKWQR 180
Query: 699 LVTEGHNRLDMFEHISLMTLDSLQKCVFSFDSNCQEKPSEYIAAILELSALVAKRHQQIF 878
L+++G RLDMFEH+SLMTLDSLQKCVFSFDSNCQEK SEYIAAILELSALVAKRHQQ
Sbjct: 181 LISDGSARLDMFEHVSLMTLDSLQKCVFSFDSNCQEKSSEYIAAILELSALVAKRHQQPL 240
Query: 879 LHKDFLYYLTPEGRRFRKACHLVHNFTDAVIQERRRSLPKEGI 1007
+ D LY LTP+G RFRKAC++VH FTDAVI+ER R+LP +G+
Sbjct: 241 MFMDLLYNLTPDGMRFRKACNVVHEFTDAVIRERHRTLPDQGL 283
Score = 42.7 bits (99), Expect(2) = e-127
Identities = 20/26 (76%), Positives = 23/26 (88%)
Frame = +2
Query: 1022 RPKANAKTLDFIDVLLLTKDEDGKGL 1099
+ KA +KTLDFIDVLLL+KDEDGK L
Sbjct: 288 KSKAKSKTLDFIDVLLLSKDEDGKEL 313
>ref|NP_071879.1| leukotriene-B4 omega-hydroxylase 3 [Mus musculus].
Length = 524
Score = 432 bits (1111), Expect(2) = e-127
Identities = 195/283 (68%), Positives = 238/283 (84%)
Frame = +3
Query: 159 MLQLSVSWLGLETVAASPWXXXXXVGASWLMSRVLVWTYAAYNYSRHLQSFPQPPKRNWF 338
M QLS+SWLGL A PW +GASW+++R+L+ YAAY RHL FPQPPKRNW
Sbjct: 1 MSQLSLSWLGLGPEVAFPWKTLLLLGASWILARILIQIYAAYRNYRHLHGFPQPPKRNWL 60
Query: 339 LGHLGLVPPTEQGLRDLTQLVTNYPKGYMTWMGPITPLVILCHPDLIRTMANVSAAIASK 518
+GH+G+V PTEQGL++LT+LV YP+G++ W+GP+ P++ LCH D++R++ N SAA+A K
Sbjct: 61 MGHVGMVTPTEQGLKELTRLVGTYPQGFLMWIGPMVPVITLCHSDIVRSILNASAAVALK 120
Query: 519 DVVFYEVLKPWLGDGLLLSAGDKWSSHRRMLTPAFHFNILKPYMKIFSDSVNVMHAKWQR 698
DV+FY +LKPWLGDGLL+SAGDKWS HRRMLTPAFHFNILKPY+KIF+DS N+MHAKWQR
Sbjct: 121 DVIFYSILKPWLGDGLLVSAGDKWSRHRRMLTPAFHFNILKPYVKIFNDSTNIMHAKWQR 180
Query: 699 LVTEGHNRLDMFEHISLMTLDSLQKCVFSFDSNCQEKPSEYIAAILELSALVAKRHQQIF 878
L+++G RLDMFEH+SLMTLDSLQKCVFSFDSNCQEK SEYIAAILELSALVAKRHQQ
Sbjct: 181 LISDGSARLDMFEHVSLMTLDSLQKCVFSFDSNCQEKSSEYIAAILELSALVAKRHQQPL 240
Query: 879 LHKDFLYYLTPEGRRFRKACHLVHNFTDAVIQERRRSLPKEGI 1007
+ D LY LTP+G RFRKAC++VH FTDAVI+ER R+LP +G+
Sbjct: 241 MFMDLLYNLTPDGMRFRKACNVVHEFTDAVIRERHRTLPDQGL 283
Score = 42.7 bits (99), Expect(2) = e-127
Identities = 20/26 (76%), Positives = 23/26 (88%)
Frame = +2
Query: 1022 RPKANAKTLDFIDVLLLTKDEDGKGL 1099
+ KA +KTLDFIDVLLL+KDEDGK L
Sbjct: 288 KSKAKSKTLDFIDVLLLSKDEDGKEL 313
>ref|NP_598888.1| cytochrome P450, family 4, subfamily f, polypeptide 15 [Mus
musculus].
Length = 534
Score = 425 bits (1092), Expect = e-119
Identities = 197/282 (69%), Positives = 231/282 (81%)
Frame = +3
Query: 156 RMLQLSVSWLGLETVAASPWXXXXXVGASWLMSRVLVWTYAAYNYSRHLQSFPQPPKRNW 335
RM QL +SWLGL A+SPW +GASWL++RVL TY Y HL FPQPPK NW
Sbjct: 5 RMPQLDLSWLGLRLEASSPWLLLLLIGASWLLARVLTQTYIFYRTYHHLCDFPQPPKWNW 64
Query: 336 FLGHLGLVPPTEQGLRDLTQLVTNYPKGYMTWMGPITPLVILCHPDLIRTMANVSAAIAS 515
FLGHLG++ PTE GL+++T LV YP+G+MTW+GPI P++ LCHPD+IR++ N SA++A
Sbjct: 65 FLGHLGMITPTEHGLKEVTNLVATYPQGFMTWLGPIIPIITLCHPDIIRSVLNASASVAL 124
Query: 516 KDVVFYEVLKPWLGDGLLLSAGDKWSSHRRMLTPAFHFNILKPYMKIFSDSVNVMHAKWQ 695
K+VVFY LKPWLGDGLLLS GDKWSSHRRMLTPAFHFNILKPY+KIF+DS N+MHAKWQ
Sbjct: 125 KEVVFYSFLKPWLGDGLLLSDGDKWSSHRRMLTPAFHFNILKPYVKIFNDSTNIMHAKWQ 184
Query: 696 RLVTEGHNRLDMFEHISLMTLDSLQKCVFSFDSNCQEKPSEYIAAILELSALVAKRHQQI 875
L + G RLD+FE+ISLMTLDSLQKCVFSFDSNCQE PSEYI+AILELSALV KR+ Q+
Sbjct: 185 HLASGGSARLDVFENISLMTLDSLQKCVFSFDSNCQENPSEYISAILELSALVTKRYHQL 244
Query: 876 FLHKDFLYYLTPEGRRFRKACHLVHNFTDAVIQERRRSLPKE 1001
LH D LY LT GRRF KACHLVH+FTDAVIQ+RRR+LP +
Sbjct: 245 LLHIDSLYQLTCSGRRFHKACHLVHSFTDAVIQDRRRTLPSK 286
>ref|NP_001095058.1| cytochrome P450, family 4, subfamily f, polypeptide 40 [Mus
musculus].
Length = 524
Score = 407 bits (1046), Expect = e-114
Identities = 186/282 (65%), Positives = 227/282 (80%)
Frame = +3
Query: 159 MLQLSVSWLGLETVAASPWXXXXXVGASWLMSRVLVWTYAAYNYSRHLQSFPQPPKRNWF 338
M L +SWLGL ++ASPW VG SW ++R L Y Y + L FPQPPK+NWF
Sbjct: 1 MRYLDLSWLGLGPMSASPWLLFFLVGISWFLARFLTQLYTLYAKCQRLCGFPQPPKKNWF 60
Query: 339 LGHLGLVPPTEQGLRDLTQLVTNYPKGYMTWMGPITPLVILCHPDLIRTMANVSAAIASK 518
GHLG+ PPTE+G++ +T+LVT YP+G+MTW+GPI PL+ LCHPD+IR++ + SAA+A K
Sbjct: 61 WGHLGMSPPTEEGMKQVTELVTTYPQGFMTWLGPIVPLITLCHPDIIRSVLSASAAVAPK 120
Query: 519 DVVFYEVLKPWLGDGLLLSAGDKWSSHRRMLTPAFHFNILKPYMKIFSDSVNVMHAKWQR 698
D +FY LKPWLGDGLL+SAGDKW+ HRRMLTPAFHFNILKPY+KIF+DS N+MHAKW R
Sbjct: 121 DDIFYSFLKPWLGDGLLVSAGDKWNRHRRMLTPAFHFNILKPYVKIFNDSTNIMHAKWLR 180
Query: 699 LVTEGHNRLDMFEHISLMTLDSLQKCVFSFDSNCQEKPSEYIAAILELSALVAKRHQQIF 878
L + G RL+MFE+ISLMTLD+LQKCVFSF+SNCQEKPS+YIAAILELS L KR++Q+
Sbjct: 181 LASGGSTRLNMFENISLMTLDTLQKCVFSFNSNCQEKPSQYIAAILELSTLAVKRNEQLL 240
Query: 879 LHKDFLYYLTPEGRRFRKACHLVHNFTDAVIQERRRSLPKEG 1004
+H D LY LTP+G RF KAC LVH+FTDAVIQERRR+L K G
Sbjct: 241 MHVDLLYRLTPDGMRFYKACRLVHDFTDAVIQERRRTLLKHG 282
>ref|NP_077764.2| leukotriene-B(4) omega-hydroxylase 2 [Mus musculus].
Length = 524
Score = 372 bits (954), Expect(2) = e-109
Identities = 176/282 (62%), Positives = 212/282 (75%)
Frame = +3
Query: 159 MLQLSVSWLGLETVAASPWXXXXXVGASWLMSRVLVWTYAAYNYSRHLQSFPQPPKRNWF 338
M QLS+SW+GL AASPW GAS L++ +L Y + S L+ FPQPPKRNW
Sbjct: 1 MSQLSMSWMGLGHTAASPWLLLLLAGASCLLAYILTPIYGVFENSLRLRCFPQPPKRNWI 60
Query: 339 LGHLGLVPPTEQGLRDLTQLVTNYPKGYMTWMGPITPLVILCHPDLIRTMANVSAAIASK 518
LGHLGL+ +E+GL + LV + W+GP+ P++ + HP I+ + A +A K
Sbjct: 61 LGHLGLIQSSEEGLLYIQSLVRTFRDACCWWVGPLHPVIRIFHPAFIKPVVLAPALVAPK 120
Query: 519 DVVFYEVLKPWLGDGLLLSAGDKWSSHRRMLTPAFHFNILKPYMKIFSDSVNVMHAKWQR 698
D VFY LKPWLGDGLL+S GDKWS HRRMLTPAFHFNILKPY+K+F+DS N+MHAKWQR
Sbjct: 121 DTVFYRFLKPWLGDGLLMSTGDKWSRHRRMLTPAFHFNILKPYVKVFNDSTNIMHAKWQR 180
Query: 699 LVTEGHNRLDMFEHISLMTLDSLQKCVFSFDSNCQEKPSEYIAAILELSALVAKRHQQIF 878
L ++G L+MFEHISLMTLDSLQKCVFSFDSNCQEKPSEYI AILELS LVA+RHQ++
Sbjct: 181 LASKGSAYLNMFEHISLMTLDSLQKCVFSFDSNCQEKPSEYITAILELSTLVARRHQRLL 240
Query: 879 LHKDFLYYLTPEGRRFRKACHLVHNFTDAVIQERRRSLPKEG 1004
LH D YYLT +G RFRKAC LVH+FTDAVI+ERRR+L +G
Sbjct: 241 LHVDLFYYLTHDGMRFRKACRLVHDFTDAVIRERRRTLLDQG 282
Score = 42.0 bits (97), Expect(2) = e-109
Identities = 20/26 (76%), Positives = 22/26 (84%)
Frame = +2
Query: 1022 RPKANAKTLDFIDVLLLTKDEDGKGL 1099
+ KA AKTLDFIDVLLL+KDE GK L
Sbjct: 288 KAKAKAKTLDFIDVLLLSKDEHGKAL 313
>ref|NP_570952.1| cytochrome P450, family 4, subfamily f, polypeptide 13 [Mus
musculus].
Length = 523
Score = 369 bits (947), Expect(2) = e-107
Identities = 171/283 (60%), Positives = 220/283 (77%)
Frame = +3
Query: 159 MLQLSVSWLGLETVAASPWXXXXXVGASWLMSRVLVWTYAAYNYSRHLQSFPQPPKRNWF 338
MLQL +SWLG+ ++ ASPW GASW+++R+L W YA Y+ L+ FPQPPK +WF
Sbjct: 1 MLQLCLSWLGMGSLTASPWHLLLLGGASWILARILAWIYAFYDNCSRLRCFPQPPKPSWF 60
Query: 339 LGHLGLVPPTEQGLRDLTQLVTNYPKGYMTWMGPITPLVILCHPDLIRTMANVSAAIASK 518
GHL L+ E+ ++ +T L ++ +++W+GP+ P++ L HP+ I + SAA+A K
Sbjct: 61 WGHLALMKNNEESMQFITHLGHDFHDVHLSWVGPVYPILRLVHPNFIAPLLQASAAVAPK 120
Query: 519 DVVFYEVLKPWLGDGLLLSAGDKWSSHRRMLTPAFHFNILKPYMKIFSDSVNVMHAKWQR 698
++ Y LKPWLGDGLL+SAGDKWS HRR+LTPAFHF+ILK Y+KIF+ SVN+MHAKWQ
Sbjct: 121 EMTLYGFLKPWLGDGLLMSAGDKWSHHRRLLTPAFHFDILKSYVKIFNKSVNIMHAKWQC 180
Query: 699 LVTEGHNRLDMFEHISLMTLDSLQKCVFSFDSNCQEKPSEYIAAILELSALVAKRHQQIF 878
L ++G +RLDMFEHISLMTLDSLQKC+FS DSNCQE S+YIAAILELS+LV KRH+Q F
Sbjct: 181 LASKGTSRLDMFEHISLMTLDSLQKCIFSVDSNCQESDSKYIAAILELSSLVVKRHRQPF 240
Query: 879 LHKDFLYYLTPEGRRFRKACHLVHNFTDAVIQERRRSLPKEGI 1007
L+ D LYYLT +GRRFRKAC LVHNFTDAVI+ERR +L +G+
Sbjct: 241 LYLDLLYYLTADGRRFRKACDLVHNFTDAVIKERRSTLNTQGV 283
Score = 40.0 bits (92), Expect(2) = e-107
Identities = 18/26 (69%), Positives = 21/26 (80%)
Frame = +2
Query: 1022 RPKANAKTLDFIDVLLLTKDEDGKGL 1099
+ KA KTLDFIDVLL+ +DE GKGL
Sbjct: 287 KAKAKTKTLDFIDVLLMAEDEHGKGL 312
>ref|NP_001094915.1| cytochrome P450, family 4, subfamily f, polypeptide 17 [Mus
musculus].
Length = 524
Score = 360 bits (924), Expect(2) = e-104
Identities = 172/283 (60%), Positives = 211/283 (74%)
Frame = +3
Query: 159 MLQLSVSWLGLETVAASPWXXXXXVGASWLMSRVLVWTYAAYNYSRHLQSFPQPPKRNWF 338
MLQL +SWLGL AA PW VGAS ++R+L W A Y+ L+ FP+PP R+WF
Sbjct: 1 MLQLGLSWLGLGPGAAFPWQLLQLVGASLFLARILTWICAFYDNYCRLRCFPEPPSRHWF 60
Query: 339 LGHLGLVPPTEQGLRDLTQLVTNYPKGYMTWMGPITPLVILCHPDLIRTMANVSAAIASK 518
GH+ +V E+GL+ LT+ + ++ W+GP P++ L HP I + SAA+A K
Sbjct: 61 WGHMSMVKNNEEGLQLLTERSHQFHDVHLCWIGPFYPILRLIHPKFIGPILQASAAVAPK 120
Query: 519 DVVFYEVLKPWLGDGLLLSAGDKWSSHRRMLTPAFHFNILKPYMKIFSDSVNVMHAKWQR 698
+++FY LKPWLGDGLL+SAG+KWS HR +LTPAFHF+ILKPYMK F+ SVN+MHAKWQR
Sbjct: 121 EMIFYGFLKPWLGDGLLVSAGEKWSRHRHLLTPAFHFDILKPYMKNFNKSVNIMHAKWQR 180
Query: 699 LVTEGHNRLDMFEHISLMTLDSLQKCVFSFDSNCQEKPSEYIAAILELSALVAKRHQQIF 878
L T+G LDM EHISLMTLDSLQ CVFSFDSNCQE PSEYIAAI ELS+L+ KRH Q F
Sbjct: 181 LTTKGTACLDMLEHISLMTLDSLQNCVFSFDSNCQESPSEYIAAIQELSSLIVKRHHQPF 240
Query: 879 LHKDFLYYLTPEGRRFRKACHLVHNFTDAVIQERRRSLPKEGI 1007
L+ DFLYY T +GRRFRKAC LVHNFTDAVI+ERRR+L + +
Sbjct: 241 LYLDFLYYCTADGRRFRKACDLVHNFTDAVIRERRRTLSSQNL 283
Score = 38.1 bits (87), Expect(2) = e-104
Identities = 18/26 (69%), Positives = 20/26 (76%)
Frame = +2
Query: 1022 RPKANAKTLDFIDVLLLTKDEDGKGL 1099
+ K +KTLDFIDVLLL KDE GK L
Sbjct: 288 KSKTKSKTLDFIDVLLLAKDEHGKEL 313
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 42,487,338
Number of extensions: 1302678
Number of successful extensions: 5294
Number of sequences better than 1.0e-05: 24
Number of HSP's gapped: 5228
Number of HSP's successfully gapped: 41
Length of query: 367
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 264
Effective length of database: 12,523,851
Effective search space: 3306296664
Effective search space used: 3306296664
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003991
(1101 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003123481.1| PREDICTED: leukotriene-B(4) omega-hydroxylas... 486 e-138
Alignment gi|XP_003123482.1| PREDICTED: leukotriene-B(4) omega-hydroxylas... 426 e-119
Alignment gi|XP_003354173.1| PREDICTED: cytochrome P450 4F22-like [Sus sc... 324 1e-92
Alignment gi|XP_003354174.1| PREDICTED: cytochrome P450 4F6-like [Sus scr... 269 2e-72
Alignment gi|XP_003356525.1| PREDICTED: cytochrome P450 4A24-like isoform... 177 9e-45
Alignment gi|XP_003127953.1| PREDICTED: cytochrome P450 4A11-like [Sus sc... 174 2e-44
Alignment gi|XP_003128064.2| PREDICTED: cytochrome P450 4A24-like isoform... 176 2e-44
Alignment gi|NP_999590.1| taurochenodeoxycholic 6 alpha-hydroxylase [Sus ... 172 4e-44
Alignment gi|XP_003128078.2| PREDICTED: cytochrome P450 4A24-like [Sus sc... 163 2e-41
Alignment gi|NP_999589.1| cytochrome P450 4A24 [Sus scrofa]. 162 3e-41
>ref|XP_003123481.1| PREDICTED: leukotriene-B(4) omega-hydroxylase 2 isoform 1 [Sus
scrofa].
Length = 524
Score = 486 bits (1251), Expect = e-138
Identities = 229/283 (80%), Positives = 250/283 (88%)
Frame = +3
Query: 159 MLQLSVSWLGLETVAASPWXXXXXVGASWLMSRVLVWTYAAYNYSRHLQSFPQPPKRNWF 338
MLQLS+SWLGL V ASPW VGASWL++RVLVWT + + R L+ FPQPPK NW
Sbjct: 1 MLQLSLSWLGLGPVEASPWLLLLLVGASWLLARVLVWTCTSLDNVRRLRGFPQPPKPNWL 60
Query: 339 LGHLGLVPPTEQGLRDLTQLVTNYPKGYMTWMGPITPLVILCHPDLIRTMANVSAAIASK 518
LGH+G VPPTE+G+ LTQ++ YP G+M WMGPITP+++LCHPDLIRTMAN SAA+A K
Sbjct: 61 LGHMGQVPPTEEGMTKLTQMMNTYPNGFMIWMGPITPIIVLCHPDLIRTMANASAAVAPK 120
Query: 519 DVVFYEVLKPWLGDGLLLSAGDKWSSHRRMLTPAFHFNILKPYMKIFSDSVNVMHAKWQR 698
DVVFY+ LKPWLGDGLLLSAGDKWSSHRRMLTPAFHFNILKPYMKIF+DSVNVMHAKWQR
Sbjct: 121 DVVFYDFLKPWLGDGLLLSAGDKWSSHRRMLTPAFHFNILKPYMKIFNDSVNVMHAKWQR 180
Query: 699 LVTEGHNRLDMFEHISLMTLDSLQKCVFSFDSNCQEKPSEYIAAILELSALVAKRHQQIF 878
LVTEGHNRLDMFEHISLMTLDSLQKCVFSFDSNCQEKPSEYIAAILELSALVAKRHQQIF
Sbjct: 181 LVTEGHNRLDMFEHISLMTLDSLQKCVFSFDSNCQEKPSEYIAAILELSALVAKRHQQIF 240
Query: 879 LHKDFLYYLTPEGRRFRKACHLVHNFTDAVIQERRRSLPKEGI 1007
LH DFLYYLTP+G RF KAC LVH+FTDAVIQERR +LP EGI
Sbjct: 241 LHLDFLYYLTPDGWRFHKACRLVHDFTDAVIQERRNTLPTEGI 283
Score = 48.9 bits (115), Expect = 5e-06
Identities = 29/63 (46%), Positives = 37/63 (58%), Gaps = 9/63 (14%)
Frame = +2
Query: 938 PPGAQFHRCC---HPGAAPLPPQRGHLMIS------FRPKANAKTLDFIDVLLLTKDEDG 1090
P G +FH+ C H + +R + + + + KA AKTLD IDVLLLTKDEDG
Sbjct: 251 PDGWRFHKACRLVHDFTDAVIQERRNTLPTEGIDDFLKAKAKAKTLDIIDVLLLTKDEDG 310
Query: 1091 KGL 1099
KGL
Sbjct: 311 KGL 313
>ref|XP_003123482.1| PREDICTED: leukotriene-B(4) omega-hydroxylase 2 isoform 2 [Sus
scrofa].
Length = 524
Score = 426 bits (1094), Expect = e-119
Identities = 207/283 (73%), Positives = 230/283 (81%)
Frame = +3
Query: 159 MLQLSVSWLGLETVAASPWXXXXXVGASWLMSRVLVWTYAAYNYSRHLQSFPQPPKRNWF 338
MLQLS+SWLGL V ASPW VGASWL++RVLVWT + + R L+ FPQPPK NW
Sbjct: 1 MLQLSLSWLGLGPVEASPWLLLLLVGASWLLARVLVWTCTSLDNVRRLRGFPQPPKPNWL 60
Query: 339 LGHLGLVPPTEQGLRDLTQLVTNYPKGYMTWMGPITPLVILCHPDLIRTMANVSAAIASK 518
LGH+G + +E+GL L + Y W+GP ++ + HP I+ + AA+A K
Sbjct: 61 LGHMGQIESSEEGLLYTQDLASTYGDVCCWWVGPWHAVIRIFHPTCIKPVLFAPAAVAPK 120
Query: 519 DVVFYEVLKPWLGDGLLLSAGDKWSSHRRMLTPAFHFNILKPYMKIFSDSVNVMHAKWQR 698
DVVFY+ LKPWLGDGLLLSAGDKWSSHRRMLTPAFHFNILKPYMKIF+DSVNVMHAKWQR
Sbjct: 121 DVVFYDFLKPWLGDGLLLSAGDKWSSHRRMLTPAFHFNILKPYMKIFNDSVNVMHAKWQR 180
Query: 699 LVTEGHNRLDMFEHISLMTLDSLQKCVFSFDSNCQEKPSEYIAAILELSALVAKRHQQIF 878
LVTEGHNRLDMFEHISLMTLDSLQKCVFSFDSNCQEKPSEYIAAILELSALVAKRHQQIF
Sbjct: 181 LVTEGHNRLDMFEHISLMTLDSLQKCVFSFDSNCQEKPSEYIAAILELSALVAKRHQQIF 240
Query: 879 LHKDFLYYLTPEGRRFRKACHLVHNFTDAVIQERRRSLPKEGI 1007
LH DFLYYLTP+G RF KAC LVH+FTDAVIQERR +LP EGI
Sbjct: 241 LHLDFLYYLTPDGWRFHKACRLVHDFTDAVIQERRNTLPTEGI 283
Score = 48.9 bits (115), Expect = 5e-06
Identities = 29/63 (46%), Positives = 37/63 (58%), Gaps = 9/63 (14%)
Frame = +2
Query: 938 PPGAQFHRCC---HPGAAPLPPQRGHLMIS------FRPKANAKTLDFIDVLLLTKDEDG 1090
P G +FH+ C H + +R + + + + KA AKTLD IDVLLLTKDEDG
Sbjct: 251 PDGWRFHKACRLVHDFTDAVIQERRNTLPTEGIDDFLKAKAKAKTLDIIDVLLLTKDEDG 310
Query: 1091 KGL 1099
KGL
Sbjct: 311 KGL 313
>ref|XP_003354173.1| PREDICTED: cytochrome P450 4F22-like [Sus scrofa].
Length = 531
Score = 324 bits (830), Expect(2) = 1e-92
Identities = 154/253 (60%), Positives = 190/253 (75%)
Frame = +3
Query: 246 LMSRVLVWTYAAYNYSRHLQSFPQPPKRNWFLGHLGLVPPTEQGLRDLTQLVTNYPKGYM 425
L+ + L + + Y R L+ FPQPP+RNW LGHLG+ P E GLR +++ N +
Sbjct: 38 LLLQFLRFCWCFYITCRRLRCFPQPPRRNWLLGHLGMYLPNEMGLRAEKKVLDNMHHVIL 97
Query: 426 TWMGPITPLVILCHPDLIRTMANVSAAIASKDVVFYEVLKPWLGDGLLLSAGDKWSSHRR 605
W+GP+ PL++L HPD I+ + SAAIA KD +FY LKPWLGDGLLLS GDKWS HRR
Sbjct: 98 VWIGPVLPLLVLVHPDYIKPVVGASAAIAPKDDLFYGFLKPWLGDGLLLSKGDKWSRHRR 157
Query: 606 MLTPAFHFNILKPYMKIFSDSVNVMHAKWQRLVTEGHNRLDMFEHISLMTLDSLQKCVFS 785
MLTPAFHF+ILKPYMKIF+ N+MHAKW+RL LDMFEH+SLMTLDSLQKCVFS
Sbjct: 158 MLTPAFHFDILKPYMKIFNQCTNIMHAKWRRLAEGSVVSLDMFEHVSLMTLDSLQKCVFS 217
Query: 786 FDSNCQEKPSEYIAAILELSALVAKRHQQIFLHKDFLYYLTPEGRRFRKACHLVHNFTDA 965
++SNCQEK S+YI+AI++LSALV +R ++ LH DF+YY T EGRRFRKAC VH FT
Sbjct: 218 YNSNCQEKMSDYISAIIQLSALVVQRQYRLHLHIDFIYYCTAEGRRFRKACDTVHRFTTE 277
Query: 966 VIQERRRSLPKEG 1004
VIQERRR+L ++G
Sbjct: 278 VIQERRRALRQQG 290
Score = 35.0 bits (79), Expect(2) = 1e-92
Identities = 16/20 (80%), Positives = 17/20 (85%)
Frame = +2
Query: 1040 KTLDFIDVLLLTKDEDGKGL 1099
K LDFIDVLLL +DEDGK L
Sbjct: 301 KNLDFIDVLLLARDEDGKEL 320
>ref|XP_003354174.1| PREDICTED: cytochrome P450 4F6-like [Sus scrofa].
Length = 216
Score = 269 bits (688), Expect = 2e-72
Identities = 127/216 (58%), Positives = 155/216 (71%)
Frame = +3
Query: 159 MLQLSVSWLGLETVAASPWXXXXXVGASWLMSRVLVWTYAAYNYSRHLQSFPQPPKRNWF 338
MLQLS+SWLGL V+ASPW VGA+WL+SR+L W Y Y+ L+ FPQPPKRNWF
Sbjct: 1 MLQLSLSWLGLGPVSASPWLLLQLVGATWLLSRILSWIYDFYDNCCRLRCFPQPPKRNWF 60
Query: 339 LGHLGLVPPTEQGLRDLTQLVTNYPKGYMTWMGPITPLVILCHPDLIRTMANVSAAIASK 518
GH L E+ L+ + + + Y+ W+GP P++ L HP+ + + A I K
Sbjct: 61 WGHQDLAKSNEECLQLMEDVGHYFHDVYLWWLGPFYPILRLVHPNFVAPLLQAPATIIHK 120
Query: 519 DVVFYEVLKPWLGDGLLLSAGDKWSSHRRMLTPAFHFNILKPYMKIFSDSVNVMHAKWQR 698
D+ Y LKPWLG GLLLSAG+KWS RR+LTPAFHF+ILK Y+KIF+ S ++MHAKWQ
Sbjct: 121 DMFLYIFLKPWLGVGLLLSAGEKWSHQRRLLTPAFHFDILKSYVKIFNRSADIMHAKWQH 180
Query: 699 LVTEGHNRLDMFEHISLMTLDSLQKCVFSFDSNCQE 806
L +EGH RLDMFEHISLMTLDSLQKCVFSFDSNCQE
Sbjct: 181 LASEGHTRLDMFEHISLMTLDSLQKCVFSFDSNCQE 216
>ref|XP_003356525.1| PREDICTED: cytochrome P450 4A24-like isoform 2 [Sus scrofa].
Length = 504
Score = 177 bits (449), Expect = 9e-45
Identities = 106/261 (40%), Positives = 144/261 (55%), Gaps = 8/261 (3%)
Frame = +3
Query: 246 LMSRVLVWTYAAYNYSRH------LQSFPQPPKRNWFLGHLGLVPPTEQGLRDLTQLVTN 407
L+ +L+ AA Y R LQ FP PP +W GH E L L + V
Sbjct: 18 LLGLLLLLLKAAQLYLRRQWLLKALQQFPSPPS-HWLYGHSREFQE-ESELPPLLKRVEK 75
Query: 408 YPKGYMTWMGPITPLVILCHPDLIRTMANVSAAIASKDVVFYEVLKPWLGDGLLLSAGDK 587
YP W +V++ PD ++ V A K+ V Y +L PW+G+GLLL G
Sbjct: 76 YPSACALWRWGTRAMVLVYDPDYMKV---VLARSDPKNSVVYRLLIPWIGNGLLLLDGQA 132
Query: 588 WSSHRRMLTPAFHFNILKPYMKIFSDSVNVMHAKWQRLVTEGHNRLDMFEHISLMTLDSL 767
W HRRMLTPAFH +ILKPY+++ +DSV VM KW++LV + RL++ +SLMTLD++
Sbjct: 133 WFQHRRMLTPAFHHDILKPYVRLMADSVQVMLDKWEQLVAQ-DPRLEIVGPVSLMTLDTI 191
Query: 768 QKCVFSFDSNCQE--KPSEYIAAILELSALVAKRHQQIFLHKDFLYYLTPEGRRFRKACH 941
KC FS + Q YI AI +L+ L+ R + +F D +Y L+PEGRR +AC
Sbjct: 192 MKCAFSHQGSVQTDGNSHSYIQAIRDLNDLLFSRVRNVFQQNDVIYRLSPEGRRSHRACQ 251
Query: 942 LVHNFTDAVIQERRRSLPKEG 1004
L H TD VIQ R+ L K+G
Sbjct: 252 LAHQHTDRVIQLRKAQLQKQG 272
>ref|XP_003127953.1| PREDICTED: cytochrome P450 4A11-like [Sus scrofa].
Length = 510
Score = 174 bits (440), Expect(2) = 2e-44
Identities = 95/237 (40%), Positives = 137/237 (57%), Gaps = 2/237 (0%)
Frame = +3
Query: 300 LQSFPQPPKRNWFLGHLGLVPPTEQGLRDLTQLVTNYPKGYMTWMGPITPLVILCHPDLI 479
LQ FP PP +W GH + L++ + V N+P+ W+ +++ PD +
Sbjct: 48 LQQFPSPPS-HWLYGH-SREHLKDNDLQEALRRVKNFPRACPYWLWGNKAHLVIYDPDYM 105
Query: 480 RTMANVSAAIASKDVVFYEVLKPWLGDGLLLSAGDKWSSHRRMLTPAFHFNILKPYMKIF 659
+ + S K ++ L PW+G GLLLS G W HRRMLTPAFH++ILKPY+ +
Sbjct: 106 KVVLGRSDP---KLTDVHKFLSPWIGYGLLLSDGQTWFQHRRMLTPAFHYDILKPYVNLM 162
Query: 660 SDSVNVMHAKWQRLVTEGHNRLDMFEHISLMTLDSLQKCVFSFDSNCQ--EKPSEYIAAI 833
+DSV VM KW++LVT+ + L++F H+SLMTLD++ KC FS+ + Q YI A+
Sbjct: 163 ADSVKVMLDKWEQLVTQ-DSHLEIFGHVSLMTLDTVMKCAFSYQGSVQTDRNSHSYIQAV 221
Query: 834 LELSALVAKRHQQIFLHKDFLYYLTPEGRRFRKACHLVHNFTDAVIQERRRSLPKEG 1004
L++L R + D +Y L+PEGR R+AC L H TD VI+ R+ L KEG
Sbjct: 222 GNLNSLFVARLRSALYQNDIIYRLSPEGRLSRQACQLAHQHTDQVIRLRKAHLQKEG 278
Score = 23.9 bits (50), Expect(2) = 2e-44
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +2
Query: 1046 LDFIDVLLLTKDEDGKGL 1099
LDF+D+LL + E+G L
Sbjct: 289 LDFLDILLFARMENGSSL 306
>ref|XP_003128064.2| PREDICTED: cytochrome P450 4A24-like isoform 1 [Sus scrofa].
Length = 504
Score = 176 bits (446), Expect = 2e-44
Identities = 106/261 (40%), Positives = 143/261 (54%), Gaps = 8/261 (3%)
Frame = +3
Query: 246 LMSRVLVWTYAAYNYSRH------LQSFPQPPKRNWFLGHLGLVPPTEQGLRDLTQLVTN 407
L+ +L+ AA Y R LQ FP PP +W GH E L L + V
Sbjct: 18 LLGLLLLLLKAAQLYLRRQWLLKALQQFPSPPS-HWLYGHSREFQE-ESELPPLLKRVEK 75
Query: 408 YPKGYMTWMGPITPLVILCHPDLIRTMANVSAAIASKDVVFYEVLKPWLGDGLLLSAGDK 587
YP W +V++ PD ++ V A K + Y+ L PWLG+GLLL G
Sbjct: 76 YPSACALWRWGTRAMVLVYDPDYMKV---VLARSEPKPHITYKYLIPWLGNGLLLLDGQA 132
Query: 588 WSSHRRMLTPAFHFNILKPYMKIFSDSVNVMHAKWQRLVTEGHNRLDMFEHISLMTLDSL 767
W HRRMLTPAFH +ILKPY+++ +DSV VM KW++LV + RL++ +SLMTLD++
Sbjct: 133 WFQHRRMLTPAFHHDILKPYVRLMADSVQVMLDKWEQLVAQ-DPRLEIVGPVSLMTLDTI 191
Query: 768 QKCVFSFDSNCQE--KPSEYIAAILELSALVAKRHQQIFLHKDFLYYLTPEGRRFRKACH 941
KC FS + Q YI AI +L+ L+ R + +F D +Y L+PEGRR +AC
Sbjct: 192 MKCAFSHQGSVQTDGNSHSYIQAIRDLNDLLFSRVRNVFQQNDVIYRLSPEGRRSHRACQ 251
Query: 942 LVHNFTDAVIQERRRSLPKEG 1004
L H TD VIQ R+ L K+G
Sbjct: 252 LAHQHTDRVIQLRKAQLQKQG 272
>ref|NP_999590.1| taurochenodeoxycholic 6 alpha-hydroxylase [Sus scrofa].
Length = 504
Score = 172 bits (437), Expect(2) = 4e-44
Identities = 105/261 (40%), Positives = 142/261 (54%), Gaps = 8/261 (3%)
Frame = +3
Query: 246 LMSRVLVWTYAAYNYSRH------LQSFPQPPKRNWFLGHLGLVPPTEQGLRDLTQLVTN 407
L+ +L+ AA Y R LQ FP PP +W GH E L+ L + V
Sbjct: 18 LLGLLLLLLKAAQLYLRRQWLLKALQQFPSPPS-HWLYGHSREFQE-ESELQPLLKRVEK 75
Query: 408 YPKGYMTWMGPITPLVILCHPDLIRTMANVSAAIASKDVVFYEVLKPWLGDGLLLSAGDK 587
YP W+ +V++ PD ++ V A K V Y +L PW+G GLLL G
Sbjct: 76 YPSACARWLWGTRAMVLVYDPDYMKV---VLARSEPKAPVLYRLLIPWIGCGLLLLNGQM 132
Query: 588 WSSHRRMLTPAFHFNILKPYMKIFSDSVNVMHAKWQRLVTEGHNRLDMFEHISLMTLDSL 767
W RRMLTPAFH++ILKPY+ + + SV VM KW++LV + RL++ +SLMTLD++
Sbjct: 133 WFQRRRMLTPAFHYDILKPYVGLMAKSVQVMLDKWEQLVAQ-DPRLEIVGPVSLMTLDTI 191
Query: 768 QKCVFSFDSNCQE--KPSEYIAAILELSALVAKRHQQIFLHKDFLYYLTPEGRRFRKACH 941
KC FS + Q YI AI +L L+ R + FL D +Y L+PEGR+ ++AC
Sbjct: 192 MKCAFSHQGSAQTDGDSQSYIQAIWDLKNLIFSRLRSAFLQNDIIYRLSPEGRQCQRACQ 251
Query: 942 LVHNFTDAVIQERRRSLPKEG 1004
VH TD VIQ R+ L KEG
Sbjct: 252 KVHQHTDRVIQLRKTHLQKEG 272
Score = 23.9 bits (50), Expect(2) = 4e-44
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +2
Query: 1046 LDFIDVLLLTKDEDGKGL 1099
LDF+D+LL + E+G L
Sbjct: 283 LDFLDILLFARMENGNSL 300
>ref|XP_003128078.2| PREDICTED: cytochrome P450 4A24-like [Sus scrofa].
Length = 504
Score = 163 bits (412), Expect(2) = 2e-41
Identities = 95/237 (40%), Positives = 130/237 (54%), Gaps = 2/237 (0%)
Frame = +3
Query: 300 LQSFPQPPKRNWFLGHLGLVPPTEQGLRDLTQLVTNYPKGYMTWMGPITPLVILCHPDLI 479
LQ FP PP +W GH E + L + + YP W LV++ PD +
Sbjct: 42 LQQFPSPPS-HWLYGHSREFQE-EGEQQSLLKRIGKYPSACARWRWGTRALVLVYDPDYM 99
Query: 480 RTMANVSAAIASKDVVFYEVLKPWLGDGLLLSAGDKWSSHRRMLTPAFHFNILKPYMKIF 659
+ V A K+ V Y +L PW+G GLLL G W RRMLTPAFH++ILKPY+ +
Sbjct: 100 KV---VLARSDPKNSVVYRLLIPWIGCGLLLLNGQTWFQRRRMLTPAFHYDILKPYVGLM 156
Query: 660 SDSVNVMHAKWQRLVTEGHNRLDMFEHISLMTLDSLQKCVFSFDSNCQE--KPSEYIAAI 833
+ SV VM KW++LV + RL++ +SLMTLD++ KC FS + Q YI AI
Sbjct: 157 AKSVQVMLDKWEQLVAQ-DPRLEIVGPVSLMTLDTIMKCAFSHQGSTQTDGDSHSYIQAI 215
Query: 834 LELSALVAKRHQQIFLHKDFLYYLTPEGRRFRKACHLVHNFTDAVIQERRRSLPKEG 1004
+L L + R + FL D +Y L+PEGR+ +A + H TD VIQ R+ L K+G
Sbjct: 216 WDLKNLFSTRTKSAFLQNDIIYRLSPEGRKSHRAARIAHQHTDRVIQLRKAQLQKQG 272
Score = 24.3 bits (51), Expect(2) = 2e-41
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +2
Query: 1046 LDFIDVLLLTKDEDGKGL 1099
LDF+D+LLL + E G L
Sbjct: 283 LDFLDILLLAQMEKGNSL 300
>ref|NP_999589.1| cytochrome P450 4A24 [Sus scrofa].
Length = 504
Score = 162 bits (411), Expect(2) = 3e-41
Identities = 95/237 (40%), Positives = 129/237 (54%), Gaps = 2/237 (0%)
Frame = +3
Query: 300 LQSFPQPPKRNWFLGHLGLVPPTEQGLRDLTQLVTNYPKGYMTWMGPITPLVILCHPDLI 479
LQ FP PP +W GH E L L + V YP W+ +V++ PD +
Sbjct: 42 LQQFPSPPS-HWLYGHSREFQE-ESELPPLLKRVEKYPSACARWLWGTRAMVLVYDPDYM 99
Query: 480 RTMANVSAAIASKDVVFYEVLKPWLGDGLLLSAGDKWSSHRRMLTPAFHFNILKPYMKIF 659
+ V A K V Y +L PW+G GLLL G W RRMLTPAFH++ILKPY+ +
Sbjct: 100 KV---VLARSDPKTSVVYRLLIPWIGCGLLLLNGQTWFQRRRMLTPAFHYDILKPYVGLM 156
Query: 660 SDSVNVMHAKWQRLVTEGHNRLDMFEHISLMTLDSLQKCVFSFDSNCQE--KPSEYIAAI 833
+ SV VM KW++LV + RL++ +SLMTLD++ KC FS + Q YI AI
Sbjct: 157 AKSVQVMLDKWEQLVAQ-DPRLEIVGPVSLMTLDTIMKCAFSHQGSVQTDGDSHSYIQAI 215
Query: 834 LELSALVAKRHQQIFLHKDFLYYLTPEGRRFRKACHLVHNFTDAVIQERRRSLPKEG 1004
+L L + R + FL D +Y L+PEG + +A + H TD VIQ R+ L K+G
Sbjct: 216 WDLKNLFSTRTKSAFLQNDIIYRLSPEGHKNHRAARIAHQHTDRVIQLRKAQLQKQG 272
Score = 24.3 bits (51), Expect(2) = 3e-41
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +2
Query: 1046 LDFIDVLLLTKDEDGKGL 1099
LDF+D+LLL + E G L
Sbjct: 283 LDFLDILLLAQMEKGNSL 300
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 31,821,839
Number of extensions: 1008093
Number of successful extensions: 4468
Number of sequences better than 1.0e-05: 16
Number of HSP's gapped: 4429
Number of HSP's successfully gapped: 27
Length of query: 367
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 267
Effective length of database: 8,854,232
Effective search space: 2364079944
Effective search space used: 2364079944
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-003991
(1101 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 297 7e-78
>Sscrofa_Chr02
|| Length = 162569375
Score = 297 bits (150), Expect = 7e-78
Identities = 245/274 (89%), Gaps = 2/274 (0%)
Strand = Plus / Minus
Query: 806 gaagcctagtgaatatattgctgccatcttggagctcagtgcccttgtggcaaaacggca 865
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 61350288 gaagcctagtgaatatattgctgccatcttggagctcagtgctcttgtggcaaaacggca 61350229
Query: 866 ccagcagatcttcctgcacaaggacttcctgtactacctcacccccgaagggaggcgctt 925
||||||||||||||||||| |||||||||||||||||||||||| || ||| |||||||
Sbjct: 61350228 ccagcagatcttcctgcacctggacttcctgtactacctcacccctgatgggtggcgctt 61350169
Query: 926 ccgcaaagcctgccacctggtgcacaatttcacagatgctgtcatccaggagcggcgccg 985
|| || ||||||| ||| || ||| | ||||||||||| ||||||||||||||||||
Sbjct: 61350168 ccataaggcctgccgcctagttcacgacttcacagatgccgtcatccaggagcggcgcaa 61350109
Query: 986 ctccctccccaaagagggcatttgatgatttccttcaggccaaaggctaatgcaaagact 1045
| |||| |||| |||||||| ||||||| ||||| ||||| |||||||| || || |||
Sbjct: 61350108 cacccttcccacagagggca-ttgatgacttcctcaaggcc-aaggctaaggctaaaact 61350051
Query: 1046 ttggacttcattgatgtgctcctgctgaccaagg 1079
|||||| |||||||||||||||||||||||||||
Sbjct: 61350050 ttggacatcattgatgtgctcctgctgaccaagg 61350017
Score = 250 bits (126), Expect = 1e-63
Identities = 129/130 (99%)
Strand = Plus / Minus
Query: 555 ggggatgggctcctgctgagtgctggtgacaagtggagcagccaccgtcgcatgctgaca 614
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61353387 ggggatgggctcctgctgagtgctggtgacaagtggagcagccaccgtcgcatgctgaca 61353328
Query: 615 cctgccttccacttcaacatcctgaagccctacatgaagattttcagtgacagcgtgaat 674
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 61353327 cctgccttccacttcaacatcctgaagccctacatgaagattttcaatgacagcgtgaat 61353268
Query: 675 gtcatgcatg 684
||||||||||
Sbjct: 61353267 gtcatgcatg 61353258
Score = 244 bits (123), Expect = 9e-62
Identities = 123/123 (100%)
Strand = Plus / Minus
Query: 684 gccaagtggcagcgtctggtcacagagggccacaaccgtttggacatgtttgaacacatc 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61351175 gccaagtggcagcgtctggtcacagagggccacaaccgtttggacatgtttgaacacatc 61351116
Query: 744 agcctcatgaccctggacagtctgcagaaatgtgtcttcagctttgacagcaattgccaa 803
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61351115 agcctcatgaccctggacagtctgcagaaatgtgtcttcagctttgacagcaattgccaa 61351056
Query: 804 gag 806
|||
Sbjct: 61351055 gag 61351053
Score = 236 bits (119), Expect = 2e-59
Identities = 232/267 (86%), Gaps = 2/267 (0%)
Strand = Plus / Plus
Query: 813 agtgaatatattgctgccatcttggagctcagtgcccttgtggcaaaacggcaccagcag 872
|||||||| |||||||| |||| |||||||||||||| ||| |||||||| | |||||
Sbjct: 61533620 agtgaatacattgctgcaatctccgagctcagtgccctggtgacaaaacggaatgagcag 61533679
Query: 873 atcttcctgcacaaggacttcctgtactacctcacccccgaagggaggcgcttccgcaaa 932
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61533680 atcttcctgcacaaggacttcctgtactacctcacccccgaagggaggcgcttccgcaag 61533739
Query: 933 gcctgccacctggtgcacaatttcacagatgctgtcatccaggagcggcgccgctccctc 992
||||||| |||||||||| | ||||||||||| ||||||||||||||||| ||| |||||
Sbjct: 61533740 gcctgccgcctggtgcacgacttcacagatgccgtcatccaggagcggcgtcgcaccctc 61533799
Query: 993 cccaaagagggcatttgatgatttccttcaggccaaaggctaatgcaaagactttggact 1052
| |||| | | || |||||| ||| | |||||||| || |||||||||||||
Sbjct: 61533800 attagtcaggg-ttcccaagacttcctt-agggccaaggctaaggccaagactttggact 61533857
Query: 1053 tcattgatgtgctcctgctgaccaagg 1079
|||||||||||||||||||| ||||||
Sbjct: 61533858 tcattgatgtgctcctgctggccaagg 61533884
Score = 230 bits (116), Expect = 1e-57
Identities = 164/180 (91%)
Strand = Plus / Plus
Query: 813 agtgaatatattgctgccatcttggagctcagtgcccttgtggcaaaacggcaccagcag 872
|||||||| |||||||| |||| |||||||||||||| ||| |||||||| | |||||
Sbjct: 61532143 agtgaatacattgctgcaatctccgagctcagtgccctggtgacaaaacggaatgagcag 61532202
Query: 873 atcttcctgcacaaggacttcctgtactacctcacccccgaagggaggcgcttccgcaaa 932
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61532203 atcttcctgcacaaggacttcctgtactacctcacccccgaagggaggcgcttccgcaag 61532262
Query: 933 gcctgccacctggtgcacaatttcacagatgctgtcatccaggagcggcgccgctccctc 992
||||||| |||||||||| | ||||||||||| ||||||||||||||||| ||| |||||
Sbjct: 61532263 gcctgccgcctggtgcacgacttcacagatgccgtcatccaggagcggcgtcgcaccctc 61532322
Score = 220 bits (111), Expect = 1e-54
Identities = 230/267 (86%), Gaps = 2/267 (0%)
Strand = Plus / Minus
Query: 813 agtgaatatattgctgccatcttggagctcagtgcccttgtggcaaaacggcaccagcag 872
|||||||||||| |||||||||| | ||||||||||| ||| ||||||| | |||||
Sbjct: 61503942 agtgaatatattactgccatcttagcactcagtgccctggtgataaaacggtgcgagcag 61503883
Query: 873 atcttcctgcacaaggacttcctgtactacctcacccccgaagggaggcgcttccgcaaa 932
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61503882 atcttcctgcacaaggacttcctgtactacctcacccccgaagggaggcgcttccgcaag 61503823
Query: 933 gcctgccacctggtgcacaatttcacagatgctgtcatccaggagcggcgccgctccctc 992
||||||| |||||||||| | ||||||||||| ||||||||||||||||| || |||||
Sbjct: 61503822 gcctgccgcctggtgcacgacttcacagatgccgtcatccaggagcggcgttgcaccctc 61503763
Query: 993 cccaaagagggcatttgatgatttccttcaggccaaaggctaatgcaaagactttggact 1052
| |||| | | || |||||| ||| | |||||||| || |||||||||||||
Sbjct: 61503762 attagtcaggg-ttcccaagacttcctt-agggccaaggctaaggccaagactttggact 61503705
Query: 1053 tcattgatgtgctcctgctgaccaagg 1079
|||||||||||||||||||| ||||||
Sbjct: 61503704 tcattgatgtgctcctgctggccaagg 61503678
Score = 157 bits (79), Expect = 2e-35
Identities = 109/119 (91%)
Strand = Plus / Minus
Query: 684 gccaagtggcagcgtctggtcacagagggccacaaccgtttggacatgtttgaacacatc 743
|||||||||||||| ||| | |||| ||||||| |||| ||||||||||||||||||||
Sbjct: 61478976 gccaagtggcagcgcttggcctcagaaggccacacccgtctggacatgtttgaacacatc 61478917
Query: 744 agcctcatgaccctggacagtctgcagaaatgtgtcttcagctttgacagcaattgcca 802
||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct: 61478916 agcctcatgactctggacagtctgcagaaatgtgtcttcagttttgacagcaactgcca 61478858
Score = 157 bits (79), Expect = 2e-35
Identities = 109/119 (91%)
Strand = Plus / Plus
Query: 684 gccaagtggcagcgtctggtcacagagggccacaaccgtttggacatgtttgaacacatc 743
||||||||||||| ||| | |||||||||||| |||| ||||||||||||||||||||
Sbjct: 61531272 gccaagtggcagcacttggcctcagagggccacacccgtctggacatgtttgaacacatc 61531331
Query: 744 agcctcatgaccctggacagtctgcagaaatgtgtcttcagctttgacagcaattgcca 802
||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct: 61531332 agcctcatgactctggacagtctgcagaaatgtgtcttcagttttgacagcaactgcca 61531390
Score = 157 bits (79), Expect = 2e-35
Identities = 109/119 (91%)
Strand = Plus / Plus
Query: 684 gccaagtggcagcgtctggtcacagagggccacaaccgtttggacatgtttgaacacatc 743
||||||||||||| ||| | |||||||||||| |||| ||||||||||||||||||||
Sbjct: 61647676 gccaagtggcagcacttggcctcagagggccacacccgtctggacatgtttgaacacatc 61647735
Query: 744 agcctcatgaccctggacagtctgcagaaatgtgtcttcagctttgacagcaattgcca 802
||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct: 61647736 agcctcatgactctggacagtctgcagaaatgtgtcttcagttttgacagcaactgcca 61647794
Score = 153 bits (77), Expect = 2e-34
Identities = 146/168 (86%), Gaps = 1/168 (0%)
Strand = Plus / Minus
Query: 813 agtgaatatattgctgccatcttggagctcagtgcccttgtggcaaaacggcaccagcag 872
|||||||||||| |||||||||| | ||||||||||| ||| ||| ||| | |||||
Sbjct: 61538103 agtgaatatattactgccatcttagcactcagtgccctggtgataaa-cggtgcgagcag 61538045
Query: 873 atcttcctgcacaaggacttcctgtactacctcacccccgaagggaggcgcttccgcaaa 932
||||||||||||| ||||||||||||||||||||||||||||||| |||||||| |
Sbjct: 61538044 atcttcctgcacanggacttcctgtactacctcacccccgaaggggagcgcttcccgcag 61537985
Query: 933 gcctgccacctggtgcacaatttcacagatgctgtcatccaggagcgg 980
|||||| |||||||||||| ||||||||||| |||||||||||||||
Sbjct: 61537984 gcctgcggcctggtgcacaacttcacagatgccgtcatccaggagcgg 61537937
Score = 149 bits (75), Expect = 4e-33
Identities = 108/119 (90%)
Strand = Plus / Minus
Query: 684 gccaagtggcagcgtctggtcacagagggccacaaccgtttggacatgtttgaacacatc 743
|||||||||||||| ||| | |||| ||||||| |||| |||| |||||||||||||||
Sbjct: 61538974 gccaagtggcagcgcttggcctcagaaggccacacccgtctggagatgtttgaacacatc 61538915
Query: 744 agcctcatgaccctggacagtctgcagaaatgtgtcttcagctttgacagcaattgcca 802
||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct: 61538914 agcctcatgactctggacagtctgcagaaatgtgtcttcagttttgacagcaactgcca 61538856
Score = 141 bits (71), Expect = 9e-31
Identities = 167/199 (83%)
Strand = Plus / Minus
Query: 156 aggatgctgcagctgagcgtgtcctggctgggactggagacagtggcagcctcaccatgg 215
|||||||||||||||||| | |||||||||||||||| | |||||| |||||||||||||
Sbjct: 61358718 aggatgctgcagctgagcctatcctggctgggactggggccagtggaagcctcaccatgg 61358659
Query: 216 ctgcttctattgctggttggggcttcctggcttatgtcccgagtcctggtctggacctat 275
|| || || | |||||||||||||||||||| || |||||||||||||||||||||
Sbjct: 61358658 ctactcctgctcctggttggggcttcctggctcctggcccgagtcctggtctggacctgc 61358599
Query: 276 gctgcctacaactattctcgccacctccaaagtttcccacagcctccaaaacggaactgg 335
| || || || ||||| ||||| | ||||||| ||||||||||||| |||||||
Sbjct: 61358598 acctcccttgacaatgttcgccgcctccgaggtttcccgcagcctccaaaaccgaactgg 61358539
Query: 336 ttcttgggtcacctgggcc 354
||||||||||| ||||||
Sbjct: 61358538 ctcttgggtcacatgggcc 61358520
Score = 129 bits (65), Expect = 4e-27
Identities = 97/108 (89%)
Strand = Plus / Minus
Query: 686 caagtggcagcgtctggtcacagagggccacaaccgtttggacatgtttgaacacatcag 745
|||||||||||| ||| | |||| || |||| |||| |||| |||||||||||||||||
Sbjct: 61540305 caagtggcagcgcttggcctcagaaggncacacccgtctggagatgtttgaacacatcag 61540246
Query: 746 cctcatgaccctggacagtctgcagaaatgtgtcttcagctttgacag 793
||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct: 61540245 cctcatgactctggacagtctgcagaaatgtgtcttcagttttgacag 61540198
Score = 99.6 bits (50), Expect = 3e-18
Identities = 83/94 (88%)
Strand = Plus / Minus
Query: 408 taccccaagggatatatgacctggatgggccccatcacacccctcgtcattttgtgccac 467
|||||||| |||| ||||| |||||||||||||||||| ||| || | ||||||||||
Sbjct: 61356631 taccccaatggatttatgatctggatgggccccatcactcccatcattgttttgtgccat 61356572
Query: 468 cctgacttgatccggacaatggccaatgtctcag 501
||||||||||||||||| |||||||||| |||||
Sbjct: 61356571 cctgacttgatccggactatggccaatgcctcag 61356538
Score = 91.7 bits (46), Expect = 8e-16
Identities = 67/74 (90%)
Strand = Plus / Plus
Query: 555 ggggatgggctcctgctgagtgctggtgacaagtggagcagccaccgtcgcatgctgaca 614
|||| |||||||||||||||||||||||| ||||||||| ||| || ||| ||||||||
Sbjct: 61470792 ggggttgggctcctgctgagtgctggtgagaagtggagccaccagcgccgcctgctgaca 61470851
Query: 615 cctgccttccactt 628
||||||||||||||
Sbjct: 61470852 cctgccttccactt 61470865
Score = 91.7 bits (46), Expect = 8e-16
Identities = 67/74 (90%)
Strand = Plus / Minus
Query: 555 ggggatgggctcctgctgagtgctggtgacaagtggagcagccaccgtcgcatgctgaca 614
|||| |||||||||||||||||||||||| ||||||||| ||| || ||| ||||||||
Sbjct: 61548131 ggggttgggctcctgctgagtgctggtgagaagtggagccaccagcgccgcctgctgaca 61548072
Query: 615 cctgccttccactt 628
||||||||||||||
Sbjct: 61548071 cctgccttccactt 61548058
Score = 91.7 bits (46), Expect = 8e-16
Identities = 73/82 (89%)
Strand = Plus / Plus
Query: 579 ggtgacaagtggagcagccaccgtcgcatgctgacacctgccttccacttcaacatcctg 638
||||||||||||||| | ||||| || ||||||||||||||||||||||| |||| ||
Sbjct: 61615981 ggtgacaagtggagccggcaccgccgtatgctgacacctgccttccactttgacattcta 61616040
Query: 639 aagccctacatgaagattttca 660
||||||||||||||||| ||||
Sbjct: 61616041 aagccctacatgaagatattca 61616062
Score = 91.7 bits (46), Expect = 8e-16
Identities = 67/74 (90%)
Strand = Plus / Plus
Query: 555 ggggatgggctcctgctgagtgctggtgacaagtggagcagccaccgtcgcatgctgaca 614
|||| |||||||||||||||||||||||| ||||||||| ||| || ||| ||||||||
Sbjct: 61645719 ggggttgggctcctgctgagtgctggtgagaagtggagccaccagcgccgcctgctgaca 61645778
Query: 615 cctgccttccactt 628
||||||||||||||
Sbjct: 61645779 cctgccttccactt 61645792
Score = 89.7 bits (45), Expect = 3e-15
Identities = 57/61 (93%)
Strand = Plus / Plus
Query: 726 gacatgtttgaacacatcagcctcatgaccctggacagtctgcagaaatgtgtcttcagc 785
||||||||||| || ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 61616344 gacatgtttgagcatgtcagcctcatgaccctggacagtcttcagaaatgtgtcttcagc 61616403
Query: 786 t 786
|
Sbjct: 61616404 t 61616404
Score = 87.7 bits (44), Expect = 1e-14
Identities = 92/108 (85%)
Strand = Plus / Plus
Query: 156 aggatgctgcagctgagcgtgtcctggctgggactggagacagtggcagcctcaccatgg 215
|||||||||||||||||| |||||||||||||||||| | | ||| ||||||| || |||
Sbjct: 61441936 aggatgctgcagctgagcctgtcctggctgggactggggcctgtgtcagcctccccgtgg 61441995
Query: 216 ctgcttctattgctggttggggcttcctggcttatgtcccgagtcctg 263
|||||||| |||||| || ||| ||||||| |||||||| |||||
Sbjct: 61441996 ctgcttctgcagctggtcggtgctacctggctcctgtcccgaatcctg 61442043
Score = 81.8 bits (41), Expect = 7e-13
Identities = 101/121 (83%)
Strand = Plus / Plus
Query: 156 aggatgctgcagctgagcgtgtcctggctgggactggagacagtggcagcctcaccatgg 215
|||||||||||||||||| |||||||||||||||||| | | ||| ||||||| || |||
Sbjct: 61637437 aggatgctgcagctgagcctgtcctggctgggactggggcctgtgtcagcctccccgtgg 61637496
Query: 216 ctgcttctattgctggttggggcttcctggcttatgtcccgagtcctggtctggacctat 275
||||| || |||||| || ||| ||||||| |||||||| ||||| ||||| ||||
Sbjct: 61637497 ctgctcctgcagctggtcggtgctacctggctcctgtcccgaatcctgtcctggatctat 61637556
Query: 276 g 276
|
Sbjct: 61637557 g 61637557
Score = 73.8 bits (37), Expect = 2e-10
Identities = 98/112 (87%), Gaps = 5/112 (4%)
Strand = Plus / Plus
Query: 684 gccaagtggcagcgtctggtcacagagggccacaaccgtttggacatgtttgaacacatc 743
||||||||||||| ||| | |||||||||||| |||| |||||||||| | |||||||
Sbjct: 61478053 gccaagtggcagcacttggcctcagagggccacacccgtctggacatgttng-acacatc 61478111
Query: 744 agcctcatgaccctggacagtctgcagaaatgtgtcttcagctttgacagca 795
|| |||||||| |||||| |||||||| ||||||||||||| ||||||||||
Sbjct: 61478112 ag-ctcatgactctggac-gtctgcag-aatgtgtcttcag-tttgacagca 61478159
Score = 65.9 bits (33), Expect = 4e-08
Identities = 33/33 (100%)
Strand = Plus / Minus
Query: 1040 aagactttggacttcattgatgtgctcctgctg 1072
|||||||||||||||||||||||||||||||||
Sbjct: 61537880 aagactttggacttcattgatgtgctcctgctg 61537848
Score = 65.9 bits (33), Expect = 4e-08
Identities = 99/121 (81%)
Strand = Plus / Minus
Query: 156 aggatgctgcagctgagcgtgtcctggctgggactggagacagtggcagcctcaccatgg 215
|||||| ||||||||||| |||||||||| ||||||| | | ||| ||||||| || |||
Sbjct: 61555626 aggatgttgcagctgagcctgtcctggctaggactggggcctgtgtcagcctccccgtgg 61555567
Query: 216 ctgcttctattgctggttggggcttcctggcttatgtcccgagtcctggtctggacctat 275
||||| || |||||| || ||| ||||||| |||||||| ||||| ||||| ||||
Sbjct: 61555566 ctgctcctgcagctggtcggtgctacctggctcctgtcccgaatcctgtcctggatctat 61555507
Query: 276 g 276
|
Sbjct: 61555506 g 61555506
Score = 61.9 bits (31), Expect = 7e-07
Identities = 52/59 (88%)
Strand = Plus / Minus
Query: 498 tcagctgccattgcatccaaggatgtggtcttctatgaagttctgaagccatggctggg 556
||||||||| | ||| ||||||||||||||||||| || |||||||||| ||||||||
Sbjct: 61353536 tcagctgccgtcgcacccaaggatgtggtcttctacgactttctgaagccctggctggg 61353478
Score = 60.0 bits (30), Expect = 3e-06
Identities = 48/54 (88%)
Strand = Plus / Minus
Query: 368 ggagcagggattgagagacttaactcagctggtgactaactaccccaagggata 421
||||||||| ||||| |||||||||||||||||| | ||| ||||| |||||||
Sbjct: 61551460 ggagcagggcttgagggacttaactcagctggtgtccaaccacccccagggata 61551407
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 32,279,030
Number of extensions: 236
Number of successful extensions: 236
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 234
Number of HSP's successfully gapped: 31
Length of query: 1101
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1080
Effective length of database: 2,808,413,156
Effective search space: 3033086208480
Effective search space used: 3033086208480
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)