Animal-Genome cDNA 20110601C-007073


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007073
         (1491 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001029784.1| hemopexin precursor [Bos taurus].                 712   0.0  
Alignment   gi|XP_002694738.1| PREDICTED: matrix metallopeptidase 11-like [...    60   5e-09
Alignment   gi|XP_584877.3| PREDICTED: matrix metallopeptidase 11-like [Bos...    60   5e-09
Alignment   gi|NP_001193566.1| stromelysin-1 [Bos taurus].                        57   4e-08
Alignment   gi|NP_001092477.1| matrix metalloproteinase-27 [Bos taurus].          52   1e-06
Alignment   gi|NP_777170.1| 72 kDa type IV collagenase precursor [Bos tauru...    51   3e-06
Alignment   gi|XP_002692352.1| PREDICTED: matrix metallopeptidase 24 (membr...    51   3e-06
Alignment   gi|XP_616761.4| PREDICTED: matrix metallopeptidase 24 (membrane...    51   3e-06
Alignment   gi|XP_002697915.1| PREDICTED: matrix metalloproteinase 25 prepr...    50   4e-06
Alignment   gi|XP_609577.4| PREDICTED: matrix metalloproteinase 25 [Bos tau...    50   4e-06

>ref|NP_001029784.1| hemopexin precursor [Bos taurus].
          Length = 459

 Score =  712 bits (1838), Expect = 0.0
 Identities = 329/452 (72%), Positives = 368/452 (81%)
 Frame = +3

Query: 135  MARALGTAGAPWLLGLCCSLAIAHPLSLTAGPKHGAEGRNESKPDPDVTERCSDGWGFDA 314
            MARAL    A WLLGLC SLA AHPL+      HG EG N +KPDP+VTERCSDGWGFDA
Sbjct: 1    MARALRVPVALWLLGLCWSLAKAHPLARAPELGHGVEGGNVAKPDPEVTERCSDGWGFDA 60

Query: 315  STLDEHGAMLFFKGPSVWAGQNWTRGLISERWKDAPSSVDAAFRRGHDSVFLIQGDKVWV 494
            +TLDEHG MLF KG  VW G  W R LISERWKDAPS VDAAFR   +SV LI+GDK WV
Sbjct: 61   TTLDEHGNMLFLKGEFVWKGHAWARQLISERWKDAPSPVDAAFRYDRNSVLLIKGDKFWV 120

Query: 495  YPPEKEKENPRSLQEEFPGVPSPLDAAVECHRGECQDEGVLFFQGTHTWFWDSTTKTTKE 674
            YPPEK +E P+ LQE+FPG+P PLDAAVECHRGEC  EGV FFQG HTWFWD +TKT K+
Sbjct: 121  YPPEKGEEYPKLLQEKFPGIPFPLDAAVECHRGECSHEGVFFFQGNHTWFWDFSTKTIKK 180

Query: 675  RLWPAVGNCSSAMRWISRYYCFRGNQFLRFDPVTGHVDPKYPRDVRDYFMSCPGRGHAHR 854
            R WPAVGNCSSA+RW++RYYCFRGN+FLRFDPVTG V+  YPRDVRDYFMSCP RGHAHR
Sbjct: 181  RSWPAVGNCSSAIRWLNRYYCFRGNKFLRFDPVTGEVNSTYPRDVRDYFMSCPNRGHAHR 240

Query: 855  NATHHGDDRCSPDLVLTALLSDNHGATYAFRGTHYWRLDTSRDGWHSWPIDHQWSHGPSA 1034
            NAT H D RCSP LVL+ALLSDNH ATYAF   HYWRLD+SRDGWHSW I+H W  GPS 
Sbjct: 241  NATQHMDKRCSPHLVLSALLSDNHSATYAFSENHYWRLDSSRDGWHSWRIEHLWPQGPST 300

Query: 1035 VDAAFSWDDKLYLIQGTQVYIFLTKAGYTLVDNYPKQLEKELGSPHGISLDAVDATFVCP 1214
            VDAAF WD KLYLIQGTQVYIFLT+AGYTLV +YPKQLEKE GSP G+ L +VDA F CP
Sbjct: 301  VDAAFLWDKKLYLIQGTQVYIFLTRAGYTLVKDYPKQLEKEFGSPDGVCLHSVDAAFTCP 360

Query: 1215 GTSRLHVMAGRKLWWLDLSLGAQGPWTELPWPHEKVDAALCTEKSLGPNSCSASGLGLYI 1394
            G+S+L++MAG+KLW LDL+LGAQ  WTELPW H KVD ALCTEKSLGP+SCSA+GLGLY+
Sbjct: 361  GSSQLYIMAGQKLWRLDLNLGAQATWTELPWLHTKVDGALCTEKSLGPHSCSANGLGLYL 420

Query: 1395 VHGPHVYCYKNLEKLVSVKAPPPPQNRNSLVG 1490
            V GP++YCYK++E+L   K  P  Q  NSL+G
Sbjct: 421  VQGPNLYCYKDVEELSKTKDLPQAQRMNSLLG 452


>ref|XP_002694738.1| PREDICTED: matrix metallopeptidase 11-like [Bos taurus].
          Length = 466

 Score = 60.1 bits (144), Expect = 5e-09
 Identities = 62/224 (27%), Positives = 88/224 (39%), Gaps = 14/224 (6%)
 Frame = +3

Query: 225 GPKHGAEGRNESKPDPDVT-ERCSDGWGFDASTLDEHGAMLFFKGPSVWA--GQNWTRG- 392
           GP  GA+    +  +PD   + C     FDA+     G + FFK   VW   G     G 
Sbjct: 250 GPGTGADTNEIAPLEPDAPPDACQVS--FDAAATIR-GELFFFKAGFVWRLRGGRLQPGY 306

Query: 393 --LISERWKDAPSSVDAAFRRGHDSVFLIQGDKVWVYPPEKEKENPRSLQEEFPGVPSPL 566
             L S  W+  PS VDAAF      ++  QG + WVY  EK    P  L  E     SP+
Sbjct: 307 PALASRHWQGLPSPVDAAFEDAQGHIWFFQGAQYWVYDGEKPVLGPAPL-SELGLQGSPI 365

Query: 567 DAAVECHRGECQDEGVLFFQGTHTWFWDSTTKTTKERL------WPAV-GNCSSAMRWIS 725
            AA+       +   + FF+    W +  + +     +      W  V     +A +   
Sbjct: 366 HAALV---WGSEKNKIYFFRSGDYWRFQPSARRVDSPVPRRVTDWRGVPSEIDAAFQDAE 422

Query: 726 RY-YCFRGNQFLRFDPVTGHVDPKYPRDVRDYFMSCPGRGHAHR 854
            + Y  RG  + +FDPV       +PR V   F SC    +  R
Sbjct: 423 GFAYFLRGRLYWKFDPVKVKALEGFPRLVGPDFFSCTEAANTFR 466


>ref|XP_584877.3| PREDICTED: matrix metallopeptidase 11-like [Bos taurus].
          Length = 466

 Score = 60.1 bits (144), Expect = 5e-09
 Identities = 62/224 (27%), Positives = 88/224 (39%), Gaps = 14/224 (6%)
 Frame = +3

Query: 225 GPKHGAEGRNESKPDPDVT-ERCSDGWGFDASTLDEHGAMLFFKGPSVWA--GQNWTRG- 392
           GP  GA+    +  +PD   + C     FDA+     G + FFK   VW   G     G 
Sbjct: 250 GPGTGADTNEIAPLEPDAPPDACQVS--FDAAATIR-GELFFFKAGFVWRLRGGRLQPGY 306

Query: 393 --LISERWKDAPSSVDAAFRRGHDSVFLIQGDKVWVYPPEKEKENPRSLQEEFPGVPSPL 566
             L S  W+  PS VDAAF      ++  QG + WVY  EK    P  L  E     SP+
Sbjct: 307 PALASRHWQGLPSPVDAAFEDAQGHIWFFQGAQYWVYDGEKPVLGPAPL-SELGLQGSPI 365

Query: 567 DAAVECHRGECQDEGVLFFQGTHTWFWDSTTKTTKERL------WPAV-GNCSSAMRWIS 725
            AA+       +   + FF+    W +  + +     +      W  V     +A +   
Sbjct: 366 HAALV---WGSEKNKIYFFRSGDYWRFQPSARRVDSPVPRRVTDWRGVPSEIDAAFQDAE 422

Query: 726 RY-YCFRGNQFLRFDPVTGHVDPKYPRDVRDYFMSCPGRGHAHR 854
            + Y  RG  + +FDPV       +PR V   F SC    +  R
Sbjct: 423 GFAYFLRGRLYWKFDPVKVKALEGFPRLVGPDFFSCTEAANTFR 466


>ref|NP_001193566.1| stromelysin-1 [Bos taurus].
          Length = 477

 Score = 57.0 bits (136), Expect = 4e-08
 Identities = 52/185 (28%), Positives = 75/185 (40%), Gaps = 16/185 (8%)
 Frame = +3

Query: 264 PDPDVTERCSDGWGFDA-STLDEHGAMLFFKGPSVWAGQNWTRG----LISERWKDAPSS 428
           P+P     C     FDA STL   G +LFFKG   W     T      LIS  W   PS 
Sbjct: 282 PEPGTPAACDPALSFDAVSTL--RGEILFFKGRHFWRKSFRTFEPEFHLISSFWPSLPSG 339

Query: 429 VDAAFR-RGHDSVFLIQGDKVW-VYPPEKEKENPRSLQE-EFPGVPSPLDAAVECHRGEC 599
           +DAA+     D+VF+ +G++ W +   E +   PR +    FP     +DAA      + 
Sbjct: 340 IDAAYEVTSKDTVFIFKGNQFWAIRGNEMQAGYPRGIHTLGFPSTVRKIDAAF----SDK 395

Query: 600 QDEGVLFFQGTHTWFWDSTTKTTKERL-------WPAV-GNCSSAMRWISRYYCFRGNQF 755
           + +   FF     W +D   ++ +          +P V     +       YY F G+  
Sbjct: 396 EKKKTYFFAEDKYWRFDEKRQSMEPGFPKQIVEDFPGVESEVDAVFEVFGFYYFFSGSSQ 455

Query: 756 LRFDP 770
             FDP
Sbjct: 456 FEFDP 460


>ref|NP_001092477.1| matrix metalloproteinase-27 [Bos taurus].
          Length = 510

 Score = 52.4 bits (124), Expect = 1e-06
 Identities = 49/186 (26%), Positives = 74/186 (39%), Gaps = 14/186 (7%)
 Frame = +3

Query: 255 ESKPDPDVTERCSDGWGFDASTLDEHGAMLFFKGPSVWAGQ----NWTRGLISERWKDAP 422
           E    P +   C     FDA T      M FFKG  +W       +    LIS  W   P
Sbjct: 266 EKPKGPTLPHACDPDLTFDAITTFRREVM-FFKGRHIWRIYYDITDVEFELISSFWPSLP 324

Query: 423 SSVDAAFRRGHDSVFLIQGDKVWVYPPEKE-KENPRSLQE-EFPGVPSPLDAAVECHRGE 596
           + + AA+    D + + + D  WV        + P+S+    FP     +DAAV C R  
Sbjct: 325 ADIHAAYENPIDKILVFKDDNFWVIRGYAVLPDYPKSIYTLGFPRRVKKIDAAV-CDR-- 381

Query: 597 CQDEGVLFFQGTHTWFWDSTTKTTKE-------RLWPAVG-NCSSAMRWISRYYCFRGNQ 752
                  FF G   W +D  T+T  +       + +P +G    +A +    +Y FR ++
Sbjct: 382 -STRKTYFFVGIWCWRYDEVTQTMDKGYPRRVVKYFPGIGLRVDAAFQHKGFFYFFRRSK 440

Query: 753 FLRFDP 770
              +DP
Sbjct: 441 QFEYDP 446


>ref|NP_777170.1| 72 kDa type IV collagenase precursor [Bos taurus].
          Length = 661

 Score = 50.8 bits (120), Expect = 3e-06
 Identities = 40/180 (22%), Positives = 72/180 (40%), Gaps = 10/180 (5%)
 Frame = +3

Query: 462 VFLIQGDKVW-VYPPEKEKENPRSLQEEFPGVPSPLDAAVECHRGECQDEGVLFFQGTHT 638
           +F  +   +W    P  +   P  +   +P +P  +DA  E    + Q+E  +FF G   
Sbjct: 486 IFFFKDRFIWRTVTPRDKPTGPLLVATFWPELPEKIDAVYE----DPQEEKAVFFAGNEY 541

Query: 639 WFWDSTT-------KTTKERLWPAVGNCSSAMRWIS--RYYCFRGNQFLRFDPVTGHVDP 791
           W + ++T         T   L P V    +A  W    + Y F G++F R++ V   +DP
Sbjct: 542 WVYSASTLERGYPKPLTSLGLPPGVQKVDAAFNWSKNKKTYIFAGDKFWRYNEVKKKMDP 601

Query: 792 KYPRDVRDYFMSCPGRGHAHRNATHHGDDRCSPDLVLTALLSDNHGATYAFRGTHYWRLD 971
            +P+ + D +                      PD +   +     G +Y F+G +Y +L+
Sbjct: 602 GFPKLIADAW-------------------NAIPDNLDAVVDLQGGGHSYFFKGAYYLKLE 642


>ref|XP_002692352.1| PREDICTED: matrix metallopeptidase 24 (membrane-inserted) [Bos
           taurus].
          Length = 596

 Score = 50.8 bits (120), Expect = 3e-06
 Identities = 39/163 (23%), Positives = 62/163 (38%), Gaps = 18/163 (11%)
 Frame = +3

Query: 396 ISERWKDAPSSVDAAFRRGHDSVFLIQGDKVWVYPPEKEKENPRSLQEEFPGVPSPLDAA 575
           I + WK  P+ +DAA+ R        +GDK WV+     +          PG P  L   
Sbjct: 369 IEQFWKGLPARIDAAYERADGRFVFFKGDKYWVFKEVTVE----------PGYPHSLGEL 418

Query: 576 VECHRGECQDEGV--------LFFQGTHTWFWDSTTKTTKE------RLWPAVGNCSSAM 713
             C   E  D  +         FF+G   W +    + T         +W  +       
Sbjct: 419 GSCLPREGIDTALRWEPVGKTYFFKGERYWRYSEERRATDPGYPKPITVWKGIPQAPQG- 477

Query: 714 RWISR----YYCFRGNQFLRFDPVTGHVDPKYPRDVRDYFMSC 830
            +IS+     Y ++G  + +FD     V+P YPR++   +M C
Sbjct: 478 AFISKEGYYTYFYKGRDYWKFDNQKLSVEPGYPRNILRDWMGC 520


>ref|XP_616761.4| PREDICTED: matrix metallopeptidase 24 (membrane-inserted) [Bos
           taurus].
          Length = 568

 Score = 50.8 bits (120), Expect = 3e-06
 Identities = 39/163 (23%), Positives = 62/163 (38%), Gaps = 18/163 (11%)
 Frame = +3

Query: 396 ISERWKDAPSSVDAAFRRGHDSVFLIQGDKVWVYPPEKEKENPRSLQEEFPGVPSPLDAA 575
           I + WK  P+ +DAA+ R        +GDK WV+     +          PG P  L   
Sbjct: 341 IEQFWKGLPARIDAAYERADGRFVFFKGDKYWVFKEVTVE----------PGYPHSLGEL 390

Query: 576 VECHRGECQDEGV--------LFFQGTHTWFWDSTTKTTKE------RLWPAVGNCSSAM 713
             C   E  D  +         FF+G   W +    + T         +W  +       
Sbjct: 391 GSCLPREGIDTALRWEPVGKTYFFKGERYWRYSEERRATDPGYPKPITVWKGIPQAPQG- 449

Query: 714 RWISR----YYCFRGNQFLRFDPVTGHVDPKYPRDVRDYFMSC 830
            +IS+     Y ++G  + +FD     V+P YPR++   +M C
Sbjct: 450 AFISKEGYYTYFYKGRDYWKFDNQKLSVEPGYPRNILRDWMGC 492


>ref|XP_002697915.1| PREDICTED: matrix metalloproteinase 25 preproprotein-like [Bos
           taurus].
          Length = 674

 Score = 50.4 bits (119), Expect = 4e-06
 Identities = 43/176 (24%), Positives = 65/176 (36%), Gaps = 9/176 (5%)
 Frame = +3

Query: 465 FLIQGDKVWVYPPEKEKENPRS--LQEEFPGVPSPLDAAVECHRGECQDEGVLFFQGTHT 638
           F  +G   W   P  +  +PR   L   + G+P+ +   ++       D  +L F G   
Sbjct: 445 FFFKGPWFWRLQPSGQLVSPRPARLHRFWEGLPTQVKV-IQAAYARHPDGRILLFSGPQF 503

Query: 639 WFW-----DSTTKTTKERLWPAVGNCSSAMRWI--SRYYCFRGNQFLRFDPVTGHVDPKY 797
           W +     +   +   E   P      +   W    + Y  RG Q+ R+D      DP Y
Sbjct: 504 WSFQDRLLEGAARPLTELGLPPGTEVDAVFSWPLNGKTYLIRGRQYWRYDEAAARPDPGY 563

Query: 798 PRDVRDYFMSCPGRGHAHRNATHHGDDRCSPDLVLTALLSDNHGATYAFRGTHYWR 965
           PRD+   +   P                 +PD V  +    N G TY F+G HYWR
Sbjct: 564 PRDL-SLWEGAPS----------------APDDVTVS----NTGDTYFFKGLHYWR 598


>ref|XP_609577.4| PREDICTED: matrix metalloproteinase 25 [Bos taurus].
          Length = 674

 Score = 50.4 bits (119), Expect = 4e-06
 Identities = 43/176 (24%), Positives = 65/176 (36%), Gaps = 9/176 (5%)
 Frame = +3

Query: 465 FLIQGDKVWVYPPEKEKENPRS--LQEEFPGVPSPLDAAVECHRGECQDEGVLFFQGTHT 638
           F  +G   W   P  +  +PR   L   + G+P+ +   ++       D  +L F G   
Sbjct: 445 FFFKGPWFWRLQPSGQLVSPRPARLHRFWEGLPTQVKV-IQAAYARHPDGRILLFSGPQF 503

Query: 639 WFW-----DSTTKTTKERLWPAVGNCSSAMRWI--SRYYCFRGNQFLRFDPVTGHVDPKY 797
           W +     +   +   E   P      +   W    + Y  RG Q+ R+D      DP Y
Sbjct: 504 WSFQDRLLEGAARPLTELGLPPGTEVDAVFSWPLNGKTYLIRGRQYWRYDEAAARPDPGY 563

Query: 798 PRDVRDYFMSCPGRGHAHRNATHHGDDRCSPDLVLTALLSDNHGATYAFRGTHYWR 965
           PRD+   +   P                 +PD V  +    N G TY F+G HYWR
Sbjct: 564 PRDL-SLWEGAPS----------------APDDVTVS----NTGDTYFFKGLHYWR 598


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 66,229,336
Number of extensions: 2081675
Number of successful extensions: 9979
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 9886
Number of HSP's successfully gapped: 10
Length of query: 497
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 391
Effective length of database: 14,174,046
Effective search space: 5542051986
Effective search space used: 5542051986
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007073
         (1491 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_853676.1| PREDICTED: similar to hemopexin [Canis familiar...   711   0.0  
Alignment   gi|NP_001229661.1| stromelysin-3 [Canis lupus familiaris].            64   5e-10
Alignment   gi|NP_001002967.1| stromelysin-1 precursor [Canis lupus familia...    55   1e-07
Alignment   gi|XP_848410.1| PREDICTED: similar to Matrix metalloproteinase-...    55   2e-07
Alignment   gi|XP_542973.2| PREDICTED: similar to Matrix metalloproteinase-...    51   3e-06
Alignment   gi|XP_852332.1| PREDICTED: similar to matrix metalloproteinase ...    50   4e-06
Alignment   gi|XP_548256.2| PREDICTED: similar to matrix metalloproteinase ...    50   4e-06
Alignment   gi|XP_535300.2| PREDICTED: similar to matrix metalloproteinase ...    50   6e-06

>ref|XP_853676.1| PREDICTED: similar to hemopexin [Canis familiaris].
          Length = 458

 Score =  711 bits (1836), Expect = 0.0
 Identities = 330/461 (71%), Positives = 373/461 (80%), Gaps = 9/461 (1%)
 Frame = +3

Query: 135  MARALGTAGAPWLLGLCCSLAIAHPLSLTAGPKHGAEGRNESKPDPDVTERCSDGWGFDA 314
            MA ALG      LLGLC SLA+AHPLS      +G EG + ++  PDVTE C DGW FDA
Sbjct: 1    MAWALG------LLGLCWSLAVAHPLSPDGTHGNGTEGGSGARVKPDVTELCLDGWSFDA 54

Query: 315  STLDEHGAMLFFKGPSVWAGQNWTRGLISERWKDAPSSVDAAFRRGHDSVFLIQGDKVWV 494
            +TLDEHGAMLFFKG  VW    W R LISERW++  S VDAAFRRGH+SVFL++GDKVWV
Sbjct: 55   TTLDEHGAMLFFKGEFVWKSHRWVRELISERWRNLTSPVDAAFRRGHNSVFLLKGDKVWV 114

Query: 495  YPPEKEKEN-PRSLQEEFPGVPSPLDAAVECHRGECQDEGVLFFQGTHTWFWDSTTKTTK 671
            YPPEK+++  P+ LQEEFPG+PSP+DAAVECHRGECQDEGVLFF+G  TWFWD TT T K
Sbjct: 115  YPPEKKEQGYPKLLQEEFPGIPSPVDAAVECHRGECQDEGVLFFKGNQTWFWDLTTGTKK 174

Query: 672  ERLWPAVGNCSSAMRWISRYYCFRGNQFLRFDPVTGHVDPKYPRDVRDYFMSCPGRGHAH 851
            ER WPAVG+CSSA+RW+SRYYCFRGNQFLRF+PVTG V PKYP DVRDYF+ CPGRGH H
Sbjct: 175  ERSWPAVGHCSSALRWLSRYYCFRGNQFLRFNPVTGEVLPKYPLDVRDYFIPCPGRGHGH 234

Query: 852  RNATHHGDD--------RCSPDLVLTALLSDNHGATYAFRGTHYWRLDTSRDGWHSWPID 1007
            RN T HG+D        RCS  LVL+ALL+DNHGATYAF G+HYWRLDTSRDGWHSWPI 
Sbjct: 235  RNGTGHGNDTHHGREDMRCSAFLVLSALLTDNHGATYAFSGSHYWRLDTSRDGWHSWPIV 294

Query: 1008 HQWSHGPSAVDAAFSWDDKLYLIQGTQVYIFLTKAGYTLVDNYPKQLEKELGSPHGISLD 1187
            HQW  GPS VDAAFSWD+K+YLIQGTQVYIFLTK GYTLVD YPK+LEKE GSPHGI+L+
Sbjct: 295  HQWPQGPSTVDAAFSWDNKVYLIQGTQVYIFLTKGGYTLVDGYPKRLEKEFGSPHGINLE 354

Query: 1188 AVDATFVCPGTSRLHVMAGRKLWWLDLSLGAQGPWTELPWPHEKVDAALCTEKSLGPNSC 1367
             VDA F CPGTSRLH+ AGR LWWLDL LGAQ  WTE+PWPHEKVD ALC EKSLGPNSC
Sbjct: 355  TVDAAFTCPGTSRLHIAAGRHLWWLDLKLGAQATWTEVPWPHEKVDGALCIEKSLGPNSC 414

Query: 1368 SASGLGLYIVHGPHVYCYKNLEKLVSVKAPPPPQNRNSLVG 1490
            SA+G GLY++HG  +YCY ++EKL + K+ P PQ   SL+G
Sbjct: 415  SANGPGLYLIHGSDLYCYSDVEKLSTAKSLPQPQRVKSLLG 455


>ref|NP_001229661.1| stromelysin-3 [Canis lupus familiaris].
          Length = 489

 Score = 63.5 bits (153), Expect = 5e-10
 Identities = 64/219 (29%), Positives = 86/219 (39%), Gaps = 17/219 (7%)
 Frame = +3

Query: 225 GPKHGAEGRN----ESKPDPDVTERCSDGWGFDASTLDEHGAMLFFKGPSVWA--GQNWT 386
           GP+ G +       E +  PD  E   D      ST+   G + FFK   VW   G    
Sbjct: 273 GPQAGVDTNEIAPLEPEAPPDACEITFDA----VSTI--RGELFFFKAGFVWRLRGGRLQ 326

Query: 387 RG---LISERWKDAPSSVDAAFRRGHDSVFLIQGDKVWVYPPEKEKENPRSLQEEFPGVP 557
            G   L S  W+  PS VDAAF      ++  QG + WVY  EK    P  L  E   + 
Sbjct: 327 PGYPALASRHWQGLPSPVDAAFEDAQGHIWFFQGAQYWVYNGEKPVLGPAPL-SELGLLG 385

Query: 558 SPLDAAVECHRGECQDEGVLFFQGTHTWFWDSTTKTTKERL------WPAV-GNCSSAMR 716
           SP+ AA+       +   + FF G   W +  +T+     +      W  V     +A R
Sbjct: 386 SPIQAALAWGP---EKNKIYFFGGRDYWRFHLSTRRVDSPVPRRATDWRGVPSEIDAAFR 442

Query: 717 WISRY-YCFRGNQFLRFDPVTGHVDPKYPRDVRDYFMSC 830
               Y Y  RG  + +FDPV       +PR V   F  C
Sbjct: 443 DADGYAYFLRGRLYWKFDPVKVKALEGFPRLVGPDFFGC 481


>ref|NP_001002967.1| stromelysin-1 precursor [Canis lupus familiaris].
          Length = 478

 Score = 55.5 bits (132), Expect = 1e-07
 Identities = 54/185 (29%), Positives = 75/185 (40%), Gaps = 16/185 (8%)
 Frame = +3

Query: 264 PDPDVTERCSDGWGFDA-STLDEHGAMLFFKGPSVWAGQNWTRG----LISERWKDAPSS 428
           P P     C     FDA STL   G  LFFK    W     T      LIS  W   PS 
Sbjct: 283 PGPGTPAACDPTLSFDAISTL--RGEFLFFKDRHFWRKSLRTLEPGFYLISSFWPSLPSG 340

Query: 429 VDAAFRR-GHDSVFLIQGDKVW-VYPPEKEKENPRSLQE-EFPGVPSPLDAAVECHRGEC 599
           +DAA+     D VF+ +G++ W +   E +   P+ +    FP     +DAAV     + 
Sbjct: 341 LDAAYEETSKDIVFIFKGNQFWAMRGTEVQAGYPKGIHTLGFPPTVKKIDAAV----FDK 396

Query: 600 QDEGVLFFQGTHTWFWDSTTKTTKERL-------WPAV-GNCSSAMRWISRYYCFRGNQF 755
           + +   FF G   W +D   ++ +          +P V     +A      YY F G+  
Sbjct: 397 EKKKTYFFVGDKYWRFDEKRQSMEPGFPKQIAEDFPGVDSKVDAAFEAFGFYYFFNGSSQ 456

Query: 756 LRFDP 770
           L FDP
Sbjct: 457 LEFDP 461


>ref|XP_848410.1| PREDICTED: similar to Matrix metalloproteinase-19 precursor
           (MMP-19) (Matrix metalloproteinase RASI) (MMP-18) [Canis
           familiaris].
          Length = 547

 Score = 54.7 bits (130), Expect = 2e-07
 Identities = 60/203 (29%), Positives = 83/203 (40%), Gaps = 14/203 (6%)
 Frame = +3

Query: 264 PDPDVTERCSDGWGFDASTLDEHGAMLFFKGPSVWAGQNWTRG---LISERWKDAPSSVD 434
           PDP     CS     DA  L   G    FKG  VW   +   G    +S  W+  P ++D
Sbjct: 286 PDP-----CSGE--LDAIMLGPRGKTYAFKGNYVWTVTDSGLGPLFQVSALWEGLPGNLD 338

Query: 435 AAFRRGHDS-VFLIQGDKVWVYPPEKEKEN-PRSLQEEFPGVPSPLDAAVECHRGECQDE 608
           AA        +   +GDKVW Y   K     P+ L    P     LDAA+        ++
Sbjct: 339 AAVYSPRTQWIHFFKGDKVWRYINFKRSPGFPKKLNRIEPN----LDAALYWPF----NQ 390

Query: 609 GVLFFQGTHTWFWDSTTKT-------TKERLWPAV-GNCSSAMRW-ISRYYCFRGNQFLR 761
            V  F+G+  W WD   +T         +RL+  V    S+A+ W   R Y F+  Q+ R
Sbjct: 391 KVFLFKGSGYWQWDELARTDFSHYPKPIKRLFTGVPDQPSAAVSWRDGRVYFFKDKQYWR 450

Query: 762 FDPVTGHVDPKYPRDVRDYFMSC 830
            +     V+  YPRD    +M C
Sbjct: 451 LNRQL-RVEKGYPRDTAPNWMHC 472


>ref|XP_542973.2| PREDICTED: similar to Matrix metalloproteinase-24 precursor
           (MMP-24) (Membrane-type matrix metalloproteinase 5)
           (MT-MMP 5) (Membrane-type-5 matrix metalloproteinase)
           (MT5-MMP) [Canis familiaris].
          Length = 626

 Score = 50.8 bits (120), Expect = 3e-06
 Identities = 39/163 (23%), Positives = 62/163 (38%), Gaps = 18/163 (11%)
 Frame = +3

Query: 396 ISERWKDAPSSVDAAFRRGHDSVFLIQGDKVWVYPPEKEKENPRSLQEEFPGVPSPLDAA 575
           I + WK  P+ +DAA+ R        +GDK WV+     +          PG P  L   
Sbjct: 399 IEQFWKGLPARIDAAYERADGRFVFFKGDKYWVFKEVTVE----------PGYPHSLGEL 448

Query: 576 VECHRGECQDEGV--------LFFQGTHTWFWDSTTKTTKE------RLWPAVGNCSSAM 713
             C   E  D  +         FF+G   W +    + T         +W  +       
Sbjct: 449 GSCLPREGIDTALRWEPVGKTYFFKGERYWRYSEERRATDPGYPKPITVWKGIPQAPQG- 507

Query: 714 RWISR----YYCFRGNQFLRFDPVTGHVDPKYPRDVRDYFMSC 830
            +IS+     Y ++G  + +FD     V+P YPR++   +M C
Sbjct: 508 AFISKEGYYTYFYKGRDYWKFDNQKLSVEPGYPRNILRDWMGC 550


>ref|XP_852332.1| PREDICTED: similar to matrix metalloproteinase 17 preproprotein
            [Canis familiaris].
          Length = 661

 Score = 50.4 bits (119), Expect = 4e-06
 Identities = 61/242 (25%), Positives = 87/242 (35%), Gaps = 31/242 (12%)
 Frame = +3

Query: 249  RNESKPDPDVTERCSDGWGFDASTLDEHGAMLFFKGPSVWAGQNWTRG--LISER----- 407
            R+ + P  DV  RCS    FDA      G   FFKG   W     TR   L+S +     
Sbjct: 385  RSSTLPRKDVPHRCSTD--FDA-VAQIRGEAFFFKGKYFW---RLTRDGHLVSLQPAQMH 438

Query: 408  --WKDAP---SSVDAAFRRGHD-SVFLIQGDKVWVYPPEKEKENPRSLQEEFPGVPSPLD 569
              W+  P    SVDA + R  D  +   +GD+ WV+     +E       +F   P  +D
Sbjct: 439  RFWRGLPLQLDSVDAVYERTSDHKIVFFKGDRYWVFKDNNVEEGYPRPVSDFGLPPGGVD 498

Query: 570  AAVECHRGECQDEGVLFFQGTHTWFWDSTTK------TTKERLWPAV-GNCSSAMRWI-S 725
            AA         ++   FF+    W +D  T+        +   W  +      AM W   
Sbjct: 499  AAFSW----SHNDKTYFFKDQLYWRFDEHTRRMDPGHPARSPPWRGIPSTLDDAMCWSDG 554

Query: 726  RYYCFRGNQFLRFDPVTGHVDPKYPRDVRDYFMSC----------PGRGHAHRNATHHGD 875
              Y FRG ++ +       V P YP+     ++ C           G   AH     H  
Sbjct: 555  AAYFFRGKEYWKVLDSELEVAPGYPQSTARDWLVCRDLQADPEGAGGEAGAHARPGQHSQ 614

Query: 876  DR 881
             R
Sbjct: 615  SR 616


>ref|XP_548256.2| PREDICTED: similar to matrix metalloproteinase 28 preproprotein
            isoform 1 [Canis familiaris].
          Length = 520

 Score = 50.4 bits (119), Expect = 4e-06
 Identities = 49/209 (23%), Positives = 76/209 (36%), Gaps = 11/209 (5%)
 Frame = +3

Query: 423  SSVDAAFRRGHDSVFLIQGDKVWVYPPEKEKENPRSLQEEFPGVPSPLD-AAVECHRGEC 599
            SS DA    G   +++ QG   W   P+     P  LQE + G+P  ++ AAV    G+ 
Sbjct: 326  SSFDAITVDGQQRLYIFQGSHFWEVAPDGNVSEPLPLQERWAGLPPHIEAAAVSLDSGDF 385

Query: 600  QDEGVLFFQGTHTW-------FWDSTTKTTKERLWPAVGNCSSAMRWISRYYCFRGNQFL 758
                  FF+G+  W        W S        L P   + +     + R   F+G ++ 
Sbjct: 386  H-----FFKGSRCWRFRGPKPVWGSPQLCRAGGL-PRHPDAALFFPPLGRLVLFKGARYY 439

Query: 759  RFDPVTGHVDPKYPRDVRDYFMSCPGRGHAHRNATHHGDDRCSPDLVLTALLSDNHGATY 938
                    V+P YPR ++D+       G   +               +   L    G+  
Sbjct: 440  VLARDGLQVEPYYPRGLQDW-------GGVPKE--------------VNGALPRPDGSII 478

Query: 939  AFRGTHYWRLDTSR---DGWHSWPIDHQW 1016
             FR   YWRLD ++     W  W  +  W
Sbjct: 479  FFRDDRYWRLDQAKLQATAWGRWAAELPW 507


>ref|XP_535300.2| PREDICTED: similar to matrix metalloproteinase 2 preproprotein
           [Canis familiaris].
          Length = 612

 Score = 50.1 bits (118), Expect = 6e-06
 Identities = 40/180 (22%), Positives = 71/180 (39%), Gaps = 10/180 (5%)
 Frame = +3

Query: 462 VFLIQGDKVW-VYPPEKEKENPRSLQEEFPGVPSPLDAAVECHRGECQDEGVLFFQGTHT 638
           +F  +   +W    P  +   P  +   +P +P  +DA  E      Q+E  +FF G   
Sbjct: 437 IFFFKDRFIWRTVTPRNKPMGPLLVATFWPELPEKIDAVYEAP----QEEKAVFFAGNEY 492

Query: 639 WFWDSTT-------KTTKERLWPAVGNCSSAMRWIS--RYYCFRGNQFLRFDPVTGHVDP 791
           W + ++T         T   L P V    +A  W    + Y F G++F R++ V   +DP
Sbjct: 493 WVYSASTLERGYPKPLTSLGLPPDVQRVDAAFNWSKNKKTYIFAGDKFWRYNEVKKKMDP 552

Query: 792 KYPRDVRDYFMSCPGRGHAHRNATHHGDDRCSPDLVLTALLSDNHGATYAFRGTHYWRLD 971
            +P+ + D +                      PD +   +     G +Y F+G +Y +L+
Sbjct: 553 GFPKLIADAW-------------------NAIPDNLDAVVDLQGSGHSYFFKGAYYLKLE 593


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 68,986,623
Number of extensions: 2144517
Number of successful extensions: 10118
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 10029
Number of HSP's successfully gapped: 9
Length of query: 497
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 390
Effective length of database: 15,307,552
Effective search space: 5969945280
Effective search space used: 5969945280
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007073
         (1491 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_000604.1| hemopexin precursor [Homo sapiens].                  724   0.0  
Alignment   gi|NP_005931.2| stromelysin-3 preproprotein [Homo sapiens].           64   4e-10
Alignment   gi|NP_057239.4| matrix metalloproteinase-17 preproprotein [Homo...    59   1e-08
Alignment   gi|NP_071913.1| matrix metalloproteinase-25 preproprotein [Homo...    57   6e-08
Alignment   gi|NP_002416.1| stromelysin-2 preproprotein [Homo sapiens].           56   8e-08
Alignment   gi|NP_006681.1| matrix metalloproteinase-24 preproprotein [Homo...    51   3e-06
Alignment   gi|NP_001121363.1| 72 kDa type IV collagenase isoform b [Homo s...    50   7e-06
Alignment   gi|NP_004521.1| 72 kDa type IV collagenase isoform a preproprot...    50   7e-06

>ref|NP_000604.1| hemopexin precursor [Homo sapiens].
          Length = 462

 Score =  724 bits (1870), Expect = 0.0
 Identities = 335/461 (72%), Positives = 374/461 (81%), Gaps = 9/461 (1%)
 Frame = +3

Query: 135  MARALGTAGAPWLLGLCCSLAIAHPLSLTAGPKHGAEGRNESKPDPDVTERCSDGWGFDA 314
            MAR LG   A  L  LC SLAIA PL  T+   HG     E+KPDPDVTERCSDGW FDA
Sbjct: 1    MARVLGAPVALGLWSLCWSLAIATPLPPTSA--HGNVAEGETKPDPDVTERCSDGWSFDA 58

Query: 315  STLDEHGAMLFFKGPSVWAGQNWTRGLISERWKDAPSSVDAAFRRGHDSVFLIQGDKVWV 494
            +TLD++G MLFFKG  VW    W R LISERWK+ PS VDAAFR+GH+SVFLI+GDKVWV
Sbjct: 59   TTLDDNGTMLFFKGEFVWKSHKWDRELISERWKNFPSPVDAAFRQGHNSVFLIKGDKVWV 118

Query: 495  YPPEK-EKENPRSLQEEFPGVPSPLDAAVECHRGECQDEGVLFFQGTHTWFWDSTTKTTK 671
            YPPEK EK  P+ LQ+EFPG+PSPLDAAVECHRGECQ EGVLFFQG   WFWD  T T K
Sbjct: 119  YPPEKKEKGYPKLLQDEFPGIPSPLDAAVECHRGECQAEGVLFFQGDREWFWDLATGTMK 178

Query: 672  ERLWPAVGNCSSAMRWISRYYCFRGNQFLRFDPVTGHVDPKYPRDVRDYFMSCPGRGHAH 851
            ER WPAVGNCSSA+RW+ RYYCF+GNQFLRFDPV G V P+YPRDVRDYFM CPGRGH H
Sbjct: 179  ERSWPAVGNCSSALRWLGRYYCFQGNQFLRFDPVRGEVPPRYPRDVRDYFMPCPGRGHGH 238

Query: 852  RNATHHGDD--------RCSPDLVLTALLSDNHGATYAFRGTHYWRLDTSRDGWHSWPID 1007
            RN T HG+         RCSP LVL+AL SDNHGATYAF GTHYWRLDTSRDGWHSWPI 
Sbjct: 239  RNGTGHGNSTHHGPEYMRCSPHLVLSALTSDNHGATYAFSGTHYWRLDTSRDGWHSWPIA 298

Query: 1008 HQWSHGPSAVDAAFSWDDKLYLIQGTQVYIFLTKAGYTLVDNYPKQLEKELGSPHGISLD 1187
            HQW  GPSAVDAAFSW++KLYL+QGTQVY+FLTK GYTLV  YPK+LEKE+G+PHGI LD
Sbjct: 299  HQWPQGPSAVDAAFSWEEKLYLVQGTQVYVFLTKGGYTLVSGYPKRLEKEVGTPHGIILD 358

Query: 1188 AVDATFVCPGTSRLHVMAGRKLWWLDLSLGAQGPWTELPWPHEKVDAALCTEKSLGPNSC 1367
            +VDA F+CPG+SRLH+MAGR+LWWLDL  GAQ  WTELPWPHEKVD ALC EKSLGPNSC
Sbjct: 359  SVDAAFICPGSSRLHIMAGRRLWWLDLKSGAQATWTELPWPHEKVDGALCMEKSLGPNSC 418

Query: 1368 SASGLGLYIVHGPHVYCYKNLEKLVSVKAPPPPQNRNSLVG 1490
            SA+G GLY++HGP++YCY ++EKL + KA P PQN  SL+G
Sbjct: 419  SANGPGLYLIHGPNLYCYSDVEKLNAAKALPQPQNVTSLLG 459


>ref|NP_005931.2| stromelysin-3 preproprotein [Homo sapiens].
          Length = 488

 Score = 63.9 bits (154), Expect = 4e-10
 Identities = 63/216 (29%), Positives = 88/216 (40%), Gaps = 14/216 (6%)
 Frame = +3

Query: 225 GPKHGAEGRNESKPDPDVTERCSDGWGFDA-STLDEHGAMLFFKGPSVWA--GQNWTRG- 392
           GP+ G +    +  +PD      +   FDA ST+   G + FFK   VW   G     G 
Sbjct: 272 GPQAGIDTNEIAPLEPDAPPDACEA-SFDAVSTI--RGELFFFKAGFVWRLRGGQLQPGY 328

Query: 393 --LISERWKDAPSSVDAAFRRGHDSVFLIQGDKVWVYPPEKEKENPRSLQEEFPGVPSPL 566
             L S  W+  PS VDAAF      ++  QG + WVY  EK    P  L  E   V  P+
Sbjct: 329 PALASRHWQGLPSPVDAAFEDAQGHIWFFQGAQYWVYDGEKPVLGPAPL-TELGLVRFPV 387

Query: 567 DAAVECHRGECQDEGVLFFQGTHTWFWDSTTKTTKERL------WPAV-GNCSSAMRWIS 725
            AA+       +   + FF+G   W +  +T+     +      W  V     +A +   
Sbjct: 388 HAALVWGP---EKNKIYFFRGRDYWRFHPSTRRVDSPVPRRATDWRGVPSEIDAAFQDAD 444

Query: 726 RY-YCFRGNQFLRFDPVTGHVDPKYPRDVRDYFMSC 830
            Y Y  RG  + +FDPV       +PR V   F  C
Sbjct: 445 GYAYFLRGRLYWKFDPVKVKALEGFPRLVGPDFFGC 480


>ref|NP_057239.4| matrix metalloproteinase-17 preproprotein [Homo sapiens].
          Length = 603

 Score = 58.9 bits (141), Expect = 1e-08
 Identities = 58/215 (26%), Positives = 84/215 (39%), Gaps = 19/215 (8%)
 Frame = +3

Query: 243 EGRNESKPDPDVTERCSDGWGFDASTLDEHGAMLFFKGPSVWAGQNWTRGLISER----- 407
           + R+ + P  DV  RCS    FDA      G   FFKG   W      R L+S +     
Sbjct: 317 DNRSSAPPRKDVPHRCSTH--FDA-VAQIRGEAFFFKGKYFWRLTR-DRHLVSLQPAQMH 372

Query: 408 --WKDAP---SSVDAAFRRGHD-SVFLIQGDKVWVYPPEKEKENPRSLQEEFPGVPSPLD 569
             W+  P    SVDA + R  D  +   +GD+ WV+     +E       +F   P  +D
Sbjct: 373 RFWRGLPLHLDSVDAVYERTSDHKIVFFKGDRYWVFKDNNVEEGYPRPVSDFSLPPGGID 432

Query: 570 AAVECHRGECQDEGVLFFQGTHTWFWDSTTK------TTKERLWPAV-GNCSSAMRWI-S 725
           AA         ++   FF+    W +D  T+        +  LW  V      AMRW   
Sbjct: 433 AAFSW----AHNDRTYFFKDQLYWRYDDHTRHMDPGYPAQSPLWRGVPSTLDDAMRWSDG 488

Query: 726 RYYCFRGNQFLRFDPVTGHVDPKYPRDVRDYFMSC 830
             Y FRG ++ +       V P YP+     ++ C
Sbjct: 489 ASYFFRGQEYWKVLDGELEVAPGYPQSTARDWLVC 523


>ref|NP_071913.1| matrix metalloproteinase-25 preproprotein [Homo sapiens].
          Length = 562

 Score = 56.6 bits (135), Expect = 6e-08
 Identities = 74/267 (27%), Positives = 96/267 (35%), Gaps = 11/267 (4%)
 Frame = +3

Query: 198 IAHPLSLTAGPKHGAEGRNESKPDPDVTERCSDGWGFDASTLDEHGAMLFFKGPSVWAGQ 377
           +A P    A P H     + S P PD   RC     FDA   +  G   FFKGP  W  Q
Sbjct: 295 LAPPPQPPASPTH-----SPSFPIPD---RCEGN--FDAIA-NIRGETFFFKGPWFWRLQ 343

Query: 378 NWTRGLISER-------WKDAPSSV---DAAFRRGHDS-VFLIQGDKVWVYPPEKEKENP 524
             +  L+S R       W+  P+ V    AA+ R  D  + L  G + WV+   + +   
Sbjct: 344 P-SGQLVSPRPARLHRFWEGLPAQVRVVQAAYARHRDGRILLFSGPQFWVFQDRQLEGGA 402

Query: 525 RSLQEEFPGVPSPLDAAVECHRGECQDEGVLFFQGTHTWFWDSTTKTTKERLWPAVGNCS 704
           R L E   G+P           GE  D           + W    KT             
Sbjct: 403 RPLTEL--GLPP----------GEEVDA---------VFSWPQNGKT------------- 428

Query: 705 SAMRWISRYYCFRGNQFLRFDPVTGHVDPKYPRDVRDYFMSCPGRGHAHRNATHHGDDRC 884
                    Y  RG Q+ R+D      DP YPRD+  +  + P                 
Sbjct: 429 ---------YLVRGRQYWRYDEAAARPDPGYPRDLSLWEGAPP----------------- 462

Query: 885 SPDLVLTALLSDNHGATYAFRGTHYWR 965
           SPD V  +    N G TY F+G HYWR
Sbjct: 463 SPDDVTVS----NAGDTYFFKGAHYWR 485


>ref|NP_002416.1| stromelysin-2 preproprotein [Homo sapiens].
          Length = 476

 Score = 56.2 bits (134), Expect = 8e-08
 Identities = 49/182 (26%), Positives = 79/182 (43%), Gaps = 16/182 (8%)
 Frame = +3

Query: 273 DVTERCSDGWGFDA-STLDEHGAMLFFKGPSVWAGQNWTRG----LISERWKDAPSSVDA 437
           ++  +C     FDA STL   G  LFFK    W   +W       LIS  W   PS +DA
Sbjct: 284 EMPAKCDPALSFDAISTL--RGEYLFFKDRYFWRRSHWNPEPEFHLISAFWPSLPSYLDA 341

Query: 438 AFR-RGHDSVFLIQGDKVW-VYPPEKEKENPRSLQE-EFPGVPSPLDAAVECHRGECQDE 608
           A+     D+VF+ +G++ W +   E +   PR +    FP     +DAAV     + + +
Sbjct: 342 AYEVNSRDTVFIFKGNEFWAIRGNEVQAGYPRGIHTLGFPPTIRKIDAAV----SDKEKK 397

Query: 609 GVLFFQGTHTWFWDSTTKTTKERL-------WPAV-GNCSSAMRWISRYYCFRGNQFLRF 764
              FF     W +D  +++ ++         +P V     + ++    +Y F G+    F
Sbjct: 398 KTYFFAADKYWRFDENSQSMEQGFPRLIADDFPGVEPKVDAVLQAFGFFYFFSGSSQFEF 457

Query: 765 DP 770
           DP
Sbjct: 458 DP 459


>ref|NP_006681.1| matrix metalloproteinase-24 preproprotein [Homo sapiens].
          Length = 645

 Score = 50.8 bits (120), Expect = 3e-06
 Identities = 39/163 (23%), Positives = 62/163 (38%), Gaps = 18/163 (11%)
 Frame = +3

Query: 396 ISERWKDAPSSVDAAFRRGHDSVFLIQGDKVWVYPPEKEKENPRSLQEEFPGVPSPLDAA 575
           I + WK  P+ +DAA+ R        +GDK WV+     +          PG P  L   
Sbjct: 418 IEQFWKGLPARIDAAYERADGRFVFFKGDKYWVFKEVTVE----------PGYPHSLGEL 467

Query: 576 VECHRGECQDEGV--------LFFQGTHTWFWDSTTKTTKE------RLWPAVGNCSSAM 713
             C   E  D  +         FF+G   W +    + T         +W  +       
Sbjct: 468 GSCLPREGIDTALRWEPVGKTYFFKGERYWRYSEERRATDPGYPKPITVWKGIPQAPQG- 526

Query: 714 RWISR----YYCFRGNQFLRFDPVTGHVDPKYPRDVRDYFMSC 830
            +IS+     Y ++G  + +FD     V+P YPR++   +M C
Sbjct: 527 AFISKEGYYTYFYKGRDYWKFDNQKLSVEPGYPRNILRDWMGC 569


>ref|NP_001121363.1| 72 kDa type IV collagenase isoform b [Homo sapiens].
          Length = 610

 Score = 49.7 bits (117), Expect = 7e-06
 Identities = 40/180 (22%), Positives = 71/180 (39%), Gaps = 10/180 (5%)
 Frame = +3

Query: 462 VFLIQGDKVW-VYPPEKEKENPRSLQEEFPGVPSPLDAAVECHRGECQDEGVLFFQGTHT 638
           +F  +   +W    P  +   P  +   +P +P  +DA  E      Q+E  +FF G   
Sbjct: 435 IFFFKDRFIWRTVTPRDKPMGPLLVATFWPELPEKIDAVYEAP----QEEKAVFFAGNEY 490

Query: 639 WFWDSTT-------KTTKERLWPAVGNCSSAMRWIS--RYYCFRGNQFLRFDPVTGHVDP 791
           W + ++T         T   L P V    +A  W    + Y F G++F R++ V   +DP
Sbjct: 491 WIYSASTLERGYPKPLTSLGLPPDVQRVDAAFNWSKNKKTYIFAGDKFWRYNEVKKKMDP 550

Query: 792 KYPRDVRDYFMSCPGRGHAHRNATHHGDDRCSPDLVLTALLSDNHGATYAFRGTHYWRLD 971
            +P+ + D +                      PD +   +     G +Y F+G +Y +L+
Sbjct: 551 GFPKLIADAW-------------------NAIPDNLDAVVDLQGGGHSYFFKGAYYLKLE 591


>ref|NP_004521.1| 72 kDa type IV collagenase isoform a preproprotein [Homo sapiens].
          Length = 660

 Score = 49.7 bits (117), Expect = 7e-06
 Identities = 40/180 (22%), Positives = 71/180 (39%), Gaps = 10/180 (5%)
 Frame = +3

Query: 462 VFLIQGDKVW-VYPPEKEKENPRSLQEEFPGVPSPLDAAVECHRGECQDEGVLFFQGTHT 638
           +F  +   +W    P  +   P  +   +P +P  +DA  E      Q+E  +FF G   
Sbjct: 485 IFFFKDRFIWRTVTPRDKPMGPLLVATFWPELPEKIDAVYEAP----QEEKAVFFAGNEY 540

Query: 639 WFWDSTT-------KTTKERLWPAVGNCSSAMRWIS--RYYCFRGNQFLRFDPVTGHVDP 791
           W + ++T         T   L P V    +A  W    + Y F G++F R++ V   +DP
Sbjct: 541 WIYSASTLERGYPKPLTSLGLPPDVQRVDAAFNWSKNKKTYIFAGDKFWRYNEVKKKMDP 600

Query: 792 KYPRDVRDYFMSCPGRGHAHRNATHHGDDRCSPDLVLTALLSDNHGATYAFRGTHYWRLD 971
            +P+ + D +                      PD +   +     G +Y F+G +Y +L+
Sbjct: 601 GFPKLIADAW-------------------NAIPDNLDAVVDLQGGGHSYFFKGAYYLKLE 641


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 67,443,932
Number of extensions: 2079840
Number of successful extensions: 9369
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 9292
Number of HSP's successfully gapped: 8
Length of query: 497
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 390
Effective length of database: 14,770,016
Effective search space: 5760306240
Effective search space used: 5760306240
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007073
         (1491 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_059067.2| hemopexin precursor [Mus musculus].                  634   0.0  
Alignment   gi|NP_032632.1| stromelysin-3 precursor [Mus musculus].               64   2e-10
Alignment   gi|NP_062344.1| stromelysin-2 precursor [Mus musculus].               62   2e-09
Alignment   gi|NP_001157669.1| matrix metalloproteinase-19 isoform 2 [Mus m...    51   2e-06
Alignment   gi|NP_067387.1| matrix metalloproteinase-19 isoform 1 [Mus musc...    51   2e-06
Alignment   gi|NP_034939.1| stromelysin-1 preproprotein [Mus musculus].           51   2e-06
Alignment   gi|NP_034938.3| matrix metalloproteinase-24 [Mus musculus].           51   3e-06
Alignment   gi|NP_032636.1| 72 kDa type IV collagenase precursor [Mus muscu...    50   6e-06

>ref|NP_059067.2| hemopexin precursor [Mus musculus].
          Length = 460

 Score =  634 bits (1635), Expect = 0.0
 Identities = 300/461 (65%), Positives = 349/461 (75%), Gaps = 9/461 (1%)
 Frame = +3

Query: 135  MARALGTAGAPWLLGLCCSLAIAHPLSLTAGPKHGAEGRNESKPDPDVTERCSDGWGFDA 314
            MAR         LLGLC SLA+A PL    G    AE  N +KPD DV E C D W FDA
Sbjct: 1    MARTAVALNILVLLGLCWSLAVASPLPTANG--RVAEVENGTKPDSDVPEHCLDTWSFDA 58

Query: 315  STLDEHGAMLFFKGPSVWAGQNWTRGLISERWKDAPSSVDAAFRRGHDSVFLIQGDKVWV 494
            +T+D +G MLFFKG  VW G + TR LIS RWK+  +SVDAAFR G DSVFLI+ DKVWV
Sbjct: 59   ATMDHNGTMLFFKGEFVWRGHSGTRELISARWKNPITSVDAAFR-GPDSVFLIKEDKVWV 117

Query: 495  YPPEKEKEN--PRSLQEEFPGVPSPLDAAVECHRGECQDEGVLFFQGTHTWFWDSTTKTT 668
            YPPEK KEN  P+  QEEFPG+P P DAAVECHRGECQ EGVLFFQG   WFWD  T+T 
Sbjct: 118  YPPEK-KENGYPKLFQEEFPGIPYPPDAAVECHRGECQSEGVLFFQGNRKWFWDFATRTQ 176

Query: 669  KERLWPAVGNCSSAMRWISRYYCFRGNQFLRFDPVTGHVDPKYPRDVRDYFMSCPGRGH- 845
            KER W  VGNC++A+RW+ RYYCF+GN+FLRF+PVTG V P+YP D RDYF+SCPGRGH 
Sbjct: 177  KERSWSTVGNCTAALRWLERYYCFQGNKFLRFNPVTGEVPPRYPLDARDYFVSCPGRGHG 236

Query: 846  ------AHRNATHHGDDRCSPDLVLTALLSDNHGATYAFRGTHYWRLDTSRDGWHSWPID 1007
                  AH N+TH    RCSPD  LTALLSD+ GATYAF G+HYWRLD+SRDGWHSWPI 
Sbjct: 237  RPRNGTAHGNSTHPMHSRCSPDPGLTALLSDHRGATYAFTGSHYWRLDSSRDGWHSWPIA 296

Query: 1008 HQWSHGPSAVDAAFSWDDKLYLIQGTQVYIFLTKAGYTLVDNYPKQLEKELGSPHGISLD 1187
            H W  GPS VDAAFSWDDK+YLIQGTQVY+FLTK G  LV  YPK+LEKELGSP GISL+
Sbjct: 297  HHWPQGPSTVDAAFSWDDKVYLIQGTQVYVFLTKGGNNLVSGYPKRLEKELGSPPGISLE 356

Query: 1188 AVDATFVCPGTSRLHVMAGRKLWWLDLSLGAQGPWTELPWPHEKVDAALCTEKSLGPNSC 1367
             +DA F CPG+SRL+V +GR+LWWLDL  GAQ  WTE+ WPHEKVD ALC +KSLGPN+C
Sbjct: 357  TIDAAFSCPGSSRLYVSSGRRLWWLDLKSGAQATWTEVSWPHEKVDGALCLDKSLGPNTC 416

Query: 1368 SASGLGLYIVHGPHVYCYKNLEKLVSVKAPPPPQNRNSLVG 1490
            S++G  LY +HGP++YCY +++KL + K+ P PQ  NS++G
Sbjct: 417  SSNGSSLYFIHGPNLYCYSSIDKLNAAKSLPQPQKVNSILG 457


>ref|NP_032632.1| stromelysin-3 precursor [Mus musculus].
          Length = 492

 Score = 64.3 bits (155), Expect = 2e-10
 Identities = 66/223 (29%), Positives = 89/223 (39%), Gaps = 13/223 (5%)
 Frame = +3

Query: 201 AHPLSLTAGPKHGAEGRNESKPDPDVTERCSDGWGFDASTLDEHGAMLFFKGPSVW---A 371
           A  LS  AG         E +  PDV E   D      ST+   G + FFK   VW   +
Sbjct: 272 APTLSSQAGTDTNEIALLEPETPPDVCETSFDA----VSTI--RGELFFFKAGFVWRLRS 325

Query: 372 G--QNWTRGLISERWKDAPSSVDAAFRRGHDSVFLIQGDKVWVYPPEKEKENPRSLQEEF 545
           G  Q     L S  W+  PS VDAAF      ++  QG + WVY  EK    P  L  + 
Sbjct: 326 GRLQPGYPALASRHWQGLPSPVDAAFEDAQGQIWFFQGAQYWVYDGEKPVLGPAPL-SKL 384

Query: 546 PGVPSPLDAAVECHRGECQDEGVLFFQGTHTWFWDSTTKTTKERL------WPAV-GNCS 704
               SP+ AA+       +   + FF+G   W +   T+     +      W  V     
Sbjct: 385 GLQGSPVHAALVWGP---EKNKIYFFRGGDYWRFHPRTQRVDNPVPRRSTDWRGVPSEID 441

Query: 705 SAMRWISRY-YCFRGNQFLRFDPVTGHVDPKYPRDVRDYFMSC 830
           +A +    Y Y  RG+ + +FDPV   V   +PR V   F  C
Sbjct: 442 AAFQDAEGYAYFLRGHLYWKFDPVKVKVLEGFPRPVGPDFFDC 484


>ref|NP_062344.1| stromelysin-2 precursor [Mus musculus].
          Length = 476

 Score = 61.6 bits (148), Expect = 2e-09
 Identities = 53/185 (28%), Positives = 78/185 (42%), Gaps = 16/185 (8%)
 Frame = +3

Query: 264 PDPDVTERCSDGWGFDA-STLDEHGAMLFFKGPSVWAGQNWTRG----LISERWKDAPSS 428
           P P+  ++C     FD+ STL   G +LFFK    W   +W       LIS  W   PS 
Sbjct: 281 PRPETPDKCDPALSFDSVSTL--RGEVLFFKDRYFWRRSHWNPEPEFHLISAFWPTLPSD 338

Query: 429 VDAAFR-RGHDSVFLIQGDKVW-VYPPEKEKENPRSLQE-EFPGVPSPLDAAVECHRGEC 599
           +DAA+     DSV + +G + W V   E +   P+ +    FP     +DAAV     E 
Sbjct: 339 LDAAYEAHNTDSVLIFKGSQFWAVRGNEVQAGYPKGIHTLGFPPTVKKIDAAV----FEK 394

Query: 600 QDEGVLFFQGTHTWFWDSTTKTTKERL-------WPAV-GNCSSAMRWISRYYCFRGNQF 755
           + +   FF G   W +D T     +         +P +     + +     +Y FRG+  
Sbjct: 395 EKKKTYFFVGDKYWRFDETRHVMDKGFPRQITDDFPGIEPQVDAVLHEFGFFYFFRGSSQ 454

Query: 756 LRFDP 770
             FDP
Sbjct: 455 FEFDP 459


>ref|NP_001157669.1| matrix metalloproteinase-19 isoform 2 [Mus musculus].
          Length = 455

 Score = 51.2 bits (121), Expect = 2e-06
 Identities = 60/208 (28%), Positives = 84/208 (40%), Gaps = 17/208 (8%)
 Frame = +3

Query: 258 SKPDPDVTERCSDGWGFDASTLDEHGAMLFFKGPSVWAGQNWTRG---LISERWKDAPSS 428
           +KP P +   CS     DA  L   G    FKG  VW   +   G    IS  W+  P +
Sbjct: 208 AKPGP-MPNPCSGE--VDAMVLGPRGKTYAFKGDYVWTVTDSGPGPLFQISALWEGLPGN 264

Query: 429 VDAAF-----RRGHDSVFLIQGDKVWVYPPEKEKENPRSLQEEFPGVPSPLDAAVECHRG 593
           +DAA      RR H      +G+KVW Y   K          +F  V   LDAA+     
Sbjct: 265 LDAAVYSPRTRRTH----FFKGNKVWRYVDFKMSP---GFPMKFNRVEPNLDAALYWP-- 315

Query: 594 ECQDEGVLFFQGTHTWFWDSTTKT--------TKERLWPAVGNCSSAMRW-ISRYYCFRG 746
              ++ V  F+G+  W WD   +T         KE         S+AM W   + Y F+G
Sbjct: 316 --VNQKVFLFKGSGYWQWDELARTDLSRYPKPIKELFTGVPDRPSAAMSWQDGQVYFFKG 373

Query: 747 NQFLRFDPVTGHVDPKYPRDVRDYFMSC 830
            ++ R +     V   YPR+   ++M C
Sbjct: 374 KEYWRLNQQL-RVAKGYPRNT-THWMHC 399


>ref|NP_067387.1| matrix metalloproteinase-19 isoform 1 [Mus musculus].
          Length = 527

 Score = 51.2 bits (121), Expect = 2e-06
 Identities = 60/208 (28%), Positives = 84/208 (40%), Gaps = 17/208 (8%)
 Frame = +3

Query: 258 SKPDPDVTERCSDGWGFDASTLDEHGAMLFFKGPSVWAGQNWTRG---LISERWKDAPSS 428
           +KP P +   CS     DA  L   G    FKG  VW   +   G    IS  W+  P +
Sbjct: 280 AKPGP-MPNPCSGE--VDAMVLGPRGKTYAFKGDYVWTVTDSGPGPLFQISALWEGLPGN 336

Query: 429 VDAAF-----RRGHDSVFLIQGDKVWVYPPEKEKENPRSLQEEFPGVPSPLDAAVECHRG 593
           +DAA      RR H      +G+KVW Y   K          +F  V   LDAA+     
Sbjct: 337 LDAAVYSPRTRRTH----FFKGNKVWRYVDFKMSP---GFPMKFNRVEPNLDAALYWP-- 387

Query: 594 ECQDEGVLFFQGTHTWFWDSTTKT--------TKERLWPAVGNCSSAMRW-ISRYYCFRG 746
              ++ V  F+G+  W WD   +T         KE         S+AM W   + Y F+G
Sbjct: 388 --VNQKVFLFKGSGYWQWDELARTDLSRYPKPIKELFTGVPDRPSAAMSWQDGQVYFFKG 445

Query: 747 NQFLRFDPVTGHVDPKYPRDVRDYFMSC 830
            ++ R +     V   YPR+   ++M C
Sbjct: 446 KEYWRLNQQL-RVAKGYPRNT-THWMHC 471


>ref|NP_034939.1| stromelysin-1 preproprotein [Mus musculus].
          Length = 479

 Score = 51.2 bits (121), Expect = 2e-06
 Identities = 53/200 (26%), Positives = 79/200 (39%), Gaps = 16/200 (8%)
 Frame = +3

Query: 219 TAGPKHGAEGRNESKPDPDVTERCSDGWGFDA-STLDEHGAMLFFKGPSVWAGQNWTRG- 392
           TA P         +  +P+ +  CS    FDA STL   G +LFFK    W     T   
Sbjct: 269 TASPDVLVVPTKSNSLEPETSPMCSSTLFFDAVSTL--RGEVLFFKDRHFWRKSLRTPEP 326

Query: 393 ---LISERWKDAPSSVDAAFR-RGHDSVFLIQGDKVWVYPPEKEKEN-PRSLQE-EFPGV 554
              LIS  W   PS++DAA+     D+VF+ +G++ W     +E    P+S+     P  
Sbjct: 327 EFYLISSFWPSLPSNMDAAYEVTNRDTVFIFKGNQFWAIRGHEELAGYPKSIHTLGLPAT 386

Query: 555 PSPLDAAVECHRGECQDEGVLFFQGTHTWFWDSTTKTTKERL-------WPAV-GNCSSA 710
              +DAA+       +     FF     W +D   ++ +          +P V     + 
Sbjct: 387 VKKIDAAI----SNKEKRKTYFFVEDKYWRFDEKKQSMEPGFPRKIAEDFPGVDSRVDAV 442

Query: 711 MRWISRYYCFRGNQFLRFDP 770
                  Y F G+  L FDP
Sbjct: 443 FEAFGFLYFFSGSSQLEFDP 462


>ref|NP_034938.3| matrix metalloproteinase-24 [Mus musculus].
          Length = 618

 Score = 50.8 bits (120), Expect = 3e-06
 Identities = 39/163 (23%), Positives = 62/163 (38%), Gaps = 18/163 (11%)
 Frame = +3

Query: 396 ISERWKDAPSSVDAAFRRGHDSVFLIQGDKVWVYPPEKEKENPRSLQEEFPGVPSPLDAA 575
           I + WK  P+ +DAA+ R        +GDK WV+     +          PG P  L   
Sbjct: 391 IEQFWKGLPARIDAAYERADGRFVFFKGDKYWVFKEVTVE----------PGYPHSLGEL 440

Query: 576 VECHRGECQDEGV--------LFFQGTHTWFWDSTTKTTKE------RLWPAVGNCSSAM 713
             C   E  D  +         FF+G   W +    + T         +W  +       
Sbjct: 441 GSCLPREGIDTALRWEPVGKTYFFKGERYWRYSEERRATDPGYPKPITVWKGIPQAPQG- 499

Query: 714 RWISR----YYCFRGNQFLRFDPVTGHVDPKYPRDVRDYFMSC 830
            +IS+     Y ++G  + +FD     V+P YPR++   +M C
Sbjct: 500 AFISKEGYYTYFYKGRDYWKFDNQKLSVEPGYPRNILRDWMGC 542


>ref|NP_032636.1| 72 kDa type IV collagenase precursor [Mus musculus].
          Length = 662

 Score = 49.7 bits (117), Expect = 6e-06
 Identities = 40/180 (22%), Positives = 71/180 (39%), Gaps = 10/180 (5%)
 Frame = +3

Query: 462 VFLIQGDKVW-VYPPEKEKENPRSLQEEFPGVPSPLDAAVECHRGECQDEGVLFFQGTHT 638
           +F  +   +W    P  +   P  +   +P +P  +DA  E      Q+E  +FF G   
Sbjct: 487 IFFFKDRFIWRTVTPRDKPTGPLLVATFWPELPEKIDAVYEAP----QEEKAVFFAGNEY 542

Query: 639 WFWDSTT-------KTTKERLWPAVGNCSSAMRWIS--RYYCFRGNQFLRFDPVTGHVDP 791
           W + ++T         T   L P V    +A  W    + Y F G++F R++ V   +DP
Sbjct: 543 WVYSASTLERGYPKPLTSLGLPPDVQQVDAAFNWSKNKKTYIFAGDKFWRYNEVKKKMDP 602

Query: 792 KYPRDVRDYFMSCPGRGHAHRNATHHGDDRCSPDLVLTALLSDNHGATYAFRGTHYWRLD 971
            +P+ + D +                      PD +   +     G +Y F+G +Y +L+
Sbjct: 603 GFPKLIADSW-------------------NAIPDNLDAVVDLQGGGHSYFFKGAYYLKLE 643


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 56,593,292
Number of extensions: 1705317
Number of successful extensions: 7482
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 7411
Number of HSP's successfully gapped: 8
Length of query: 497
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 392
Effective length of database: 12,463,779
Effective search space: 4885801368
Effective search space used: 4885801368
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007073
         (1491 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_999118.1| hemopexin precursor [Sus scrofa].                    953   0.0  
Alignment   gi|XP_001929480.1| PREDICTED: stromelysin-3 [Sus scrofa].             60   3e-09
Alignment   gi|XP_001925199.2| PREDICTED: LOW QUALITY PROTEIN: matrix metal...    57   3e-08
Alignment   gi|XP_003354681.1| PREDICTED: matrix metalloproteinase-25-like ...    57   3e-08
Alignment   gi|NP_001159780.1| stromelysin-1 [Sus scrofa].                        51   1e-06

>ref|NP_999118.1| hemopexin precursor [Sus scrofa].
          Length = 459

 Score =  953 bits (2463), Expect = 0.0
 Identities = 439/452 (97%), Positives = 444/452 (98%)
 Frame = +3

Query: 135  MARALGTAGAPWLLGLCCSLAIAHPLSLTAGPKHGAEGRNESKPDPDVTERCSDGWGFDA 314
            MARALGT  APWLLGLCCSLAIAHPLSLTAGPKHGAEGRNESKPDPDVTERCSDGWGFDA
Sbjct: 1    MARALGTVEAPWLLGLCCSLAIAHPLSLTAGPKHGAEGRNESKPDPDVTERCSDGWGFDA 60

Query: 315  STLDEHGAMLFFKGPSVWAGQNWTRGLISERWKDAPSSVDAAFRRGHDSVFLIQGDKVWV 494
            STLDEHGAMLFFKGPSVWAGQNWTRGLISERWK+APSSVDAAFRRGHD VFLIQGDKVWV
Sbjct: 61   STLDEHGAMLFFKGPSVWAGQNWTRGLISERWKNAPSSVDAAFRRGHDRVFLIQGDKVWV 120

Query: 495  YPPEKEKENPRSLQEEFPGVPSPLDAAVECHRGECQDEGVLFFQGTHTWFWDSTTKTTKE 674
            YPPEKEKENPRSLQEEFPGVPSPLDAAVECHRGECQDEGVLFFQGTHTWFWDSTTKTTKE
Sbjct: 121  YPPEKEKENPRSLQEEFPGVPSPLDAAVECHRGECQDEGVLFFQGTHTWFWDSTTKTTKE 180

Query: 675  RLWPAVGNCSSAMRWISRYYCFRGNQFLRFDPVTGHVDPKYPRDVRDYFMSCPGRGHAHR 854
            RLWPAVGNCSSAMRWISRYYCFRGNQFLRFDPVTGHVDPKYPRDVRDYFMSCPGRGHAHR
Sbjct: 181  RLWPAVGNCSSAMRWISRYYCFRGNQFLRFDPVTGHVDPKYPRDVRDYFMSCPGRGHAHR 240

Query: 855  NATHHGDDRCSPDLVLTALLSDNHGATYAFRGTHYWRLDTSRDGWHSWPIDHQWSHGPSA 1034
            NATH GDDRCSPDLVLTALLSDNHGATYAFRGTHYWRLDTSRDGWHSWPIDHQWSHGPSA
Sbjct: 241  NATHRGDDRCSPDLVLTALLSDNHGATYAFRGTHYWRLDTSRDGWHSWPIDHQWSHGPSA 300

Query: 1035 VDAAFSWDDKLYLIQGTQVYIFLTKAGYTLVDNYPKQLEKELGSPHGISLDAVDATFVCP 1214
            VDAAFSWDDKLYLIQGTQVYIFLTKAGYTLVDNYPKQLEKELGSPHGISLDAVDATFVCP
Sbjct: 301  VDAAFSWDDKLYLIQGTQVYIFLTKAGYTLVDNYPKQLEKELGSPHGISLDAVDATFVCP 360

Query: 1215 GTSRLHVMAGRKLWWLDLSLGAQGPWTELPWPHEKVDAALCTEKSLGPNSCSASGLGLYI 1394
            GTSRLHVMAGRKLWWLDLSLGAQGPWTELPWPHEKVDAALCTEKSLGPNSCSASGLGLYI
Sbjct: 361  GTSRLHVMAGRKLWWLDLSLGAQGPWTELPWPHEKVDAALCTEKSLGPNSCSASGLGLYI 420

Query: 1395 VHGPHVYCYKNLEKLVSVKAPPPPQNRNSLVG 1490
            VHGPHVYCYK++EKLVS KA P PQ+ NSL+G
Sbjct: 421  VHGPHVYCYKDVEKLVSAKALPQPQSVNSLLG 452


>ref|XP_001929480.1| PREDICTED: stromelysin-3 [Sus scrofa].
          Length = 491

 Score = 60.1 bits (144), Expect = 3e-09
 Identities = 55/180 (30%), Positives = 72/180 (40%), Gaps = 14/180 (7%)
 Frame = +3

Query: 333 GAMLFFKGPSVWAG-----QNWTRGLISERWKDAPSSVDAAFRRGHDSVFLIQGDKVWVY 497
           G + FFK   VW       Q     L S  W+  PS VDAAF      ++  QG + WVY
Sbjct: 309 GELFFFKAGFVWRLRRGHLQPGYPALASRHWQGLPSPVDAAFEDAQGHIWFFQGAQYWVY 368

Query: 498 PPEKEKENPRSLQE-EFPGVPSPLDAAVECHRGECQDEGVLFFQGTHTWFWDSTTKTTKE 674
             EK    P  L E   PG  SP+ AA+       +   V FF+G   W +  +T     
Sbjct: 369 DGEKPALGPAPLSELGLPG--SPVHAALVWGP---EKNKVYFFRGGDYWRFHPSTHRVDS 423

Query: 675 RL------WPAV-GNCSSAMRWISRY-YCFRGNQFLRFDPVTGHVDPKYPRDVRDYFMSC 830
            +      W  V     +A +    Y Y  RG  + +FDPV       +PR V   F  C
Sbjct: 424 PVPRRATDWRGVPSEIDAAFQDADGYAYFLRGRLYWKFDPVKVKALEGFPRLVGLDFFGC 483


>ref|XP_001925199.2| PREDICTED: LOW QUALITY PROTEIN: matrix metalloproteinase-17 [Sus
           scrofa].
          Length = 592

 Score = 57.0 bits (136), Expect = 3e-08
 Identities = 59/215 (27%), Positives = 84/215 (39%), Gaps = 19/215 (8%)
 Frame = +3

Query: 243 EGRNESKPDPDVTERCSDGWGFDASTLDEHGAMLFFKGPSVWAGQNWTRGLISER----- 407
           + R+ S P  DV  RCS    FDA      G  LFFKG   W   N  R L+S +     
Sbjct: 317 DNRSSSPPRKDVPHRCSTH--FDA-VAQIXGESLFFKGKYFWR-LNRDRHLVSLQPVQMH 372

Query: 408 --WKDAP---SSVDAAFRRGHD-SVFLIQGDKVWVYPPEKEKENPRSLQEEFPGVPSPLD 569
             W+       SVDA + R  D  +   +GD+ WV+     +E       +F   P  +D
Sbjct: 373 RFWRGLLLHLDSVDAVYERTSDHKIIFFKGDRYWVFKDNNVEEGYPRPVSDFGLPPGGVD 432

Query: 570 AAVECHRGECQDEGVLFFQGTHTWFWDSTTK------TTKERLWPAV-GNCSSAMRWI-S 725
           AA         ++   FF+    W +D  T+        +   W  V      AMRW   
Sbjct: 433 AAFSW----AHNDKTYFFKDQLYWRYDEHTRRMDPGHPAQSPPWRGVPSTLDDAMRWSDG 488

Query: 726 RYYCFRGNQFLRFDPVTGHVDPKYPRDVRDYFMSC 830
             Y FRG ++ +       V P YP+     ++ C
Sbjct: 489 AAYFFRGKEYWKVLDSELEVAPGYPQSTARDWLVC 523


>ref|XP_003354681.1| PREDICTED: matrix metalloproteinase-25-like [Sus scrofa].
          Length = 780

 Score = 57.0 bits (136), Expect = 3e-08
 Identities = 63/245 (25%), Positives = 84/245 (34%), Gaps = 11/245 (4%)
 Frame = +3

Query: 264 PDPDVTERCSDGWGFDASTLDEHGAMLFFKGPSVWAGQNWTRGLISER-------WKDAP 422
           P   V +RC     FDA   +  G   FFKGP  W  Q  +  L+S R       W+  P
Sbjct: 313 PSQPVPDRCEGN--FDAIA-NIRGETFFFKGPWFWRLQP-SGQLVSPRPARLHRFWEGLP 368

Query: 423 SSVD---AAFRRGHDS-VFLIQGDKVWVYPPEKEKENPRSLQEEFPGVPSPLDAAVECHR 590
           + V    AA+ R  D  + L  G + WV+   + +  PR L E        +DA      
Sbjct: 369 AQVQVIQAAYARHPDGRILLFSGPQFWVFQDRRLEGAPRPLTELGLPPQEQVDAVFS--- 425

Query: 591 GECQDEGVLFFQGTHTWFWDSTTKTTKERLWPAVGNCSSAMRWISRYYCFRGNQFLRFDP 770
                                         WP  G          + Y  RG ++ R+D 
Sbjct: 426 ------------------------------WPLNG----------KTYLVRGQRYWRYDE 445

Query: 771 VTGHVDPKYPRDVRDYFMSCPGRGHAHRNATHHGDDRCSPDLVLTALLSDNHGATYAFRG 950
                DP YPRD+  +             A H  DD          +   N G TY F+G
Sbjct: 446 AAASPDPGYPRDLSLW-----------EGAPHAPDD----------VTVSNTGDTYFFKG 484

Query: 951 THYWR 965
            HYWR
Sbjct: 485 AHYWR 489


>ref|NP_001159780.1| stromelysin-1 [Sus scrofa].
          Length = 477

 Score = 51.2 bits (121), Expect = 1e-06
 Identities = 53/200 (26%), Positives = 80/200 (40%), Gaps = 17/200 (8%)
 Frame = +3

Query: 222 AGPKHGAEGRNESKPDPDVTERCSDGWGFDA-STLDEHGAMLFFKGPSVWAGQNWTR--- 389
           A P    E    +   P     C     FDA STL   G +LFFK    W  +++ R   
Sbjct: 268 ASPPEPVEPTESTPQKPGTPATCDPALSFDAISTL--RGEILFFKDRHFWR-KSFRRLEP 324

Query: 390 --GLISERWKDAPSSVDAAFR-RGHDSVFLIQGDKVW-VYPPEKEKENPRSLQE-EFPGV 554
              LIS  W   PSS+DAA      D+VF+ +G + W +   + +   PRS+    FP  
Sbjct: 325 EFHLISSFWPPLPSSIDAACEVISKDTVFIFKGTQFWAIRGNDVQPGYPRSIHTLGFPST 384

Query: 555 PSPLDAAVECHRGECQDEGVLFFQGTHTWFWDSTTKTTKERL-------WPAV-GNCSSA 710
              +DAA+     + + +   FF     W +D   ++ +          +P V     + 
Sbjct: 385 VKKIDAAI----SDKETKKTYFFVEDKYWRFDEKRQSMEPGFPKQIVEDFPGVEPKVDAV 440

Query: 711 MRWISRYYCFRGNQFLRFDP 770
                 +Y F G+    FDP
Sbjct: 441 FEAFGFFYFFNGSSQFEFDP 460


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 42,881,136
Number of extensions: 1349266
Number of successful extensions: 6234
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 6187
Number of HSP's successfully gapped: 5
Length of query: 497
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 394
Effective length of database: 8,779,541
Effective search space: 3459139154
Effective search space used: 3459139154
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007073
         (1491 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr09                                                         412   e-112

>Sscrofa_Chr09 
||          Length = 153670197

 Score =  412 bits (208), Expect = e-112
 Identities = 214/216 (99%)
 Strand = Plus / Plus

                                                                           
Query: 626     aggcacccacacctggttctgggactccacgacaaaaaccacaaaggagcgcctctggcc 685
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3949767 aggcacccacacctggttctgggactccacgacaaaaaccacaaaggagcgcctctggcc 3949826

                                                                           
Query: 686     ggccgtgggcaactgctcctccgccatgcgatggatcagccgctactactgcttccgggg 745
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3949827 ggccgtgggcaactgctcctccgccatgcgatggatcagccgctactactgcttccgggg 3949886

                                                                           
Query: 746     taaccagttcctgcgctttgaccctgtcacgggacatgtggatcccaaataccctcggga 805
               |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 3949887 taaccagttcctgcgctttgaccccgtcacgggacatgtggatcccaaataccctcggga 3949946

                                                   
Query: 806     tgtccgcgactacttcatgtcctgcccgggcagagg 841
               ||||||||||||||||||||||||||||| ||||||
Sbjct: 3949947 tgtccgcgactacttcatgtcctgcccggacagagg 3949982



 Score =  381 bits (192), Expect = e-103
 Identities = 237/252 (94%)
 Strand = Plus / Plus

                                                                           
Query: 1240    caggacggaagctgtggtggctggacctgagtttaggcgctcaaggcccgtggaccgagc 1299
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 3954864 caggacggaagctgtggtggctggacctgagtttaggcgctcaaggcccgtggacagagc 3954923

                                                                           
Query: 1300    ttccctggccgcatgagaaggtcgatgcagccctgtgcacggaaaagtctctcggcccca 1359
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3954924 ttccctggccgcatgagaaggtcgatgcagccctgtgcacggaaaagtctctcggcccca 3954983

                                                                           
Query: 1360    actcgtgttccgccagcggcctcggcctgtacatcgtccacggcccccatgtctactgct 1419
               ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 3954984 actcgtgttccgccagcggcctcggcctgtacatcgtccacggcccccacgtctactgct 3955043

                                                                           
Query: 1420    acaaaaacctggaaaaactggtctcggtcaaggcccctcccccgccccaaaaccgaaaca 1479
               ||||| || |||| ||||||||||||| |||||| |  |||| |||||| | |  |||||
Sbjct: 3955044 acaaagacgtggagaaactggtctcggccaaggcgctgccccagccccagagcgtaaaca 3955103

                           
Query: 1480    gcctggtgggct 1491
               ||||| ||||||
Sbjct: 3955104 gcctgctgggct 3955115



 Score =  341 bits (172), Expect = 7e-91
 Identities = 195/205 (95%)
 Strand = Plus / Plus

                                                                           
Query: 14      acattggcacagtcccgggaggtnnnnnnnagcaggcatgggcgggggcggtgctgctgc 73
               |||||||||||||||||||||||       ||||||||||||||||||||||||||| ||
Sbjct: 3946393 acattggcacagtcccgggaggtcccccccagcaggcatgggcgggggcggtgctgccgc 3946452

                                                                           
Query: 74      cacctctatatagggcgttcagccggggcccagcgctgacctgtggcccctccagctcat 133
               |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 3946453 cacctctatatagggcgttcagccggggcccagcgctgacctgtggcccccccagctcat 3946512

                                                                           
Query: 134     catggctcgggcgctgggaacagcgggggcaccgtggctgttggggctctgctgctctct 193
               ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 3946513 catggctcgggcgctgggaacagtgggggcaccgtggctgttggggctctgctgctctct 3946572

                                        
Query: 194     ggccatcgcccaccctctttctctg 218
               |||||||||||||||||||||||||
Sbjct: 3946573 ggccatcgcccaccctctttctctg 3946597



 Score =  333 bits (168), Expect = 2e-88
 Identities = 168/168 (100%)
 Strand = Plus / Plus

                                                                           
Query: 1076    ccagggcacccaggtctatatcttcctgacaaaggcgggctacaccctggtagacaatta 1135
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3954581 ccagggcacccaggtctatatcttcctgacaaaggcgggctacaccctggtagacaatta 3954640

                                                                           
Query: 1136    cccaaagcagctggagaaggagctcgggagccctcacggcatcagccttgacgctgtgga 1195
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3954641 cccaaagcagctggagaaggagctcgggagccctcacggcatcagccttgacgctgtgga 3954700

                                                               
Query: 1196    tgcgacctttgtctgtcctgggacgtctcggctccacgtcatggcagg 1243
               ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3954701 tgcgacctttgtctgtcctgggacgtctcggctccacgtcatggcagg 3954748



 Score =  299 bits (151), Expect = 2e-78
 Identities = 154/155 (99%)
 Strand = Plus / Plus

                                                                           
Query: 474     cagggggacaaggtctgggtctacccgccagagaaggagaaagaaaatccaaggtcgctc 533
               |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 3949038 cagggggacaaggtctgggtctaccctccagagaaggagaaagaaaatccaaggtcgctc 3949097

                                                                           
Query: 534     caagaggagtttcctggagtcccatccccactggatgctgcagtggaatgtcaccgtgga 593
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3949098 caagaggagtttcctggagtcccatccccactggatgctgcagtggaatgtcaccgtgga 3949157

                                                  
Query: 594     gaatgccaagatgagggcgtcctcttcttccaagg 628
               |||||||||||||||||||||||||||||||||||
Sbjct: 3949158 gaatgccaagatgagggcgtcctcttcttccaagg 3949192



 Score =  264 bits (133), Expect = 1e-67
 Identities = 133/133 (100%)
 Strand = Plus / Plus

                                                                           
Query: 948     gggacccactactggcgtctggacaccagccgggacgggtggcacagctggcccattgac 1007
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3954377 gggacccactactggcgtctggacaccagccgggacgggtggcacagctggcccattgac 3954436

                                                                           
Query: 1008    catcagtggtcccacggtccttcggccgtggatgctgccttttcctgggatgacaagctc 1067
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3954437 catcagtggtcccacggtccttcggccgtggatgctgccttttcctgggatgacaagctc 3954496

                            
Query: 1068    tatctgatccagg 1080
               |||||||||||||
Sbjct: 3954497 tatctgatccagg 3954509



 Score =  224 bits (113), Expect = 1e-55
 Identities = 122/125 (97%)
 Strand = Plus / Plus

                                                                           
Query: 353     agggccgtctgtgtgggcgggtcaaaactggacccgggggttaatctcagagaggtggaa 412
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3947405 agggccgtctgtgtgggcgggtcaaaactggacccgggggttaatctcagagaggtggaa 3947464

                                                                           
Query: 413     ggacgcccccagctccgtggacgccgccttccgccgtggtcacgacagcgtctttctcat 472
                 |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 3947465 aaacgcccccagctccgtggacgccgccttccgccgtggtcacgacagagtctttctcat 3947524

                    
Query: 473     ccagg 477
               |||||
Sbjct: 3947525 ccagg 3947529



 Score =  212 bits (107), Expect = 4e-52
 Identities = 110/111 (99%)
 Strand = Plus / Plus

                                                                           
Query: 839     aggccatgcacacaggaacgcaacccaccatggggatgaccgctgtagcccagacctggt 898
               ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 3950226 aggccatgcacacaggaacgcaacccaccgtggggatgaccgctgtagcccagacctggt 3950285

                                                                  
Query: 899     cttgactgcactgctgtctgacaaccacggtgccacctacgccttccgtgg 949
               |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3950286 cttgactgcactgctgtctgacaaccacggtgccacctacgccttccgtgg 3950336



 Score =  139 bits (70), Expect = 5e-30
 Identities = 73/74 (98%)
 Strand = Plus / Plus

                                                                           
Query: 282     gaacgctgctcggatggctggggcttcgacgccagcaccctggatgagcacggggctatg 341
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3946897 gaacgctgctcggatggctggggcttcgacgccagcaccctggatgagcacggggctatg 3946956

                             
Query: 342     ctgttttttaaagg 355
               |||||||| |||||
Sbjct: 3946957 ctgtttttcaaagg 3946970



 Score =  129 bits (65), Expect = 5e-27
 Identities = 65/65 (100%)
 Strand = Plus / Plus

                                                                           
Query: 218     gactgctggccctaagcacggagctgaaggcaggaatgagtccaagccggacccagacgt 277
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3946747 gactgctggccctaagcacggagctgaaggcaggaatgagtccaagccggacccagacgt 3946806

                    
Query: 278     gaccg 282
               |||||
Sbjct: 3946807 gaccg 3946811


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 36,900,446
Number of extensions: 221
Number of successful extensions: 221
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 220
Number of HSP's successfully gapped: 10
Length of query: 1491
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1470
Effective length of database: 2,808,413,156
Effective search space: 4128367339320
Effective search space used: 4128367339320
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)