Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007073
(1491 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029784.1| hemopexin precursor [Bos taurus]. 712 0.0
Alignment gi|XP_002694738.1| PREDICTED: matrix metallopeptidase 11-like [... 60 5e-09
Alignment gi|XP_584877.3| PREDICTED: matrix metallopeptidase 11-like [Bos... 60 5e-09
Alignment gi|NP_001193566.1| stromelysin-1 [Bos taurus]. 57 4e-08
Alignment gi|NP_001092477.1| matrix metalloproteinase-27 [Bos taurus]. 52 1e-06
Alignment gi|NP_777170.1| 72 kDa type IV collagenase precursor [Bos tauru... 51 3e-06
Alignment gi|XP_002692352.1| PREDICTED: matrix metallopeptidase 24 (membr... 51 3e-06
Alignment gi|XP_616761.4| PREDICTED: matrix metallopeptidase 24 (membrane... 51 3e-06
Alignment gi|XP_002697915.1| PREDICTED: matrix metalloproteinase 25 prepr... 50 4e-06
Alignment gi|XP_609577.4| PREDICTED: matrix metalloproteinase 25 [Bos tau... 50 4e-06
>ref|NP_001029784.1| hemopexin precursor [Bos taurus].
Length = 459
Score = 712 bits (1838), Expect = 0.0
Identities = 329/452 (72%), Positives = 368/452 (81%)
Frame = +3
Query: 135 MARALGTAGAPWLLGLCCSLAIAHPLSLTAGPKHGAEGRNESKPDPDVTERCSDGWGFDA 314
MARAL A WLLGLC SLA AHPL+ HG EG N +KPDP+VTERCSDGWGFDA
Sbjct: 1 MARALRVPVALWLLGLCWSLAKAHPLARAPELGHGVEGGNVAKPDPEVTERCSDGWGFDA 60
Query: 315 STLDEHGAMLFFKGPSVWAGQNWTRGLISERWKDAPSSVDAAFRRGHDSVFLIQGDKVWV 494
+TLDEHG MLF KG VW G W R LISERWKDAPS VDAAFR +SV LI+GDK WV
Sbjct: 61 TTLDEHGNMLFLKGEFVWKGHAWARQLISERWKDAPSPVDAAFRYDRNSVLLIKGDKFWV 120
Query: 495 YPPEKEKENPRSLQEEFPGVPSPLDAAVECHRGECQDEGVLFFQGTHTWFWDSTTKTTKE 674
YPPEK +E P+ LQE+FPG+P PLDAAVECHRGEC EGV FFQG HTWFWD +TKT K+
Sbjct: 121 YPPEKGEEYPKLLQEKFPGIPFPLDAAVECHRGECSHEGVFFFQGNHTWFWDFSTKTIKK 180
Query: 675 RLWPAVGNCSSAMRWISRYYCFRGNQFLRFDPVTGHVDPKYPRDVRDYFMSCPGRGHAHR 854
R WPAVGNCSSA+RW++RYYCFRGN+FLRFDPVTG V+ YPRDVRDYFMSCP RGHAHR
Sbjct: 181 RSWPAVGNCSSAIRWLNRYYCFRGNKFLRFDPVTGEVNSTYPRDVRDYFMSCPNRGHAHR 240
Query: 855 NATHHGDDRCSPDLVLTALLSDNHGATYAFRGTHYWRLDTSRDGWHSWPIDHQWSHGPSA 1034
NAT H D RCSP LVL+ALLSDNH ATYAF HYWRLD+SRDGWHSW I+H W GPS
Sbjct: 241 NATQHMDKRCSPHLVLSALLSDNHSATYAFSENHYWRLDSSRDGWHSWRIEHLWPQGPST 300
Query: 1035 VDAAFSWDDKLYLIQGTQVYIFLTKAGYTLVDNYPKQLEKELGSPHGISLDAVDATFVCP 1214
VDAAF WD KLYLIQGTQVYIFLT+AGYTLV +YPKQLEKE GSP G+ L +VDA F CP
Sbjct: 301 VDAAFLWDKKLYLIQGTQVYIFLTRAGYTLVKDYPKQLEKEFGSPDGVCLHSVDAAFTCP 360
Query: 1215 GTSRLHVMAGRKLWWLDLSLGAQGPWTELPWPHEKVDAALCTEKSLGPNSCSASGLGLYI 1394
G+S+L++MAG+KLW LDL+LGAQ WTELPW H KVD ALCTEKSLGP+SCSA+GLGLY+
Sbjct: 361 GSSQLYIMAGQKLWRLDLNLGAQATWTELPWLHTKVDGALCTEKSLGPHSCSANGLGLYL 420
Query: 1395 VHGPHVYCYKNLEKLVSVKAPPPPQNRNSLVG 1490
V GP++YCYK++E+L K P Q NSL+G
Sbjct: 421 VQGPNLYCYKDVEELSKTKDLPQAQRMNSLLG 452
>ref|XP_002694738.1| PREDICTED: matrix metallopeptidase 11-like [Bos taurus].
Length = 466
Score = 60.1 bits (144), Expect = 5e-09
Identities = 62/224 (27%), Positives = 88/224 (39%), Gaps = 14/224 (6%)
Frame = +3
Query: 225 GPKHGAEGRNESKPDPDVT-ERCSDGWGFDASTLDEHGAMLFFKGPSVWA--GQNWTRG- 392
GP GA+ + +PD + C FDA+ G + FFK VW G G
Sbjct: 250 GPGTGADTNEIAPLEPDAPPDACQVS--FDAAATIR-GELFFFKAGFVWRLRGGRLQPGY 306
Query: 393 --LISERWKDAPSSVDAAFRRGHDSVFLIQGDKVWVYPPEKEKENPRSLQEEFPGVPSPL 566
L S W+ PS VDAAF ++ QG + WVY EK P L E SP+
Sbjct: 307 PALASRHWQGLPSPVDAAFEDAQGHIWFFQGAQYWVYDGEKPVLGPAPL-SELGLQGSPI 365
Query: 567 DAAVECHRGECQDEGVLFFQGTHTWFWDSTTKTTKERL------WPAV-GNCSSAMRWIS 725
AA+ + + FF+ W + + + + W V +A +
Sbjct: 366 HAALV---WGSEKNKIYFFRSGDYWRFQPSARRVDSPVPRRVTDWRGVPSEIDAAFQDAE 422
Query: 726 RY-YCFRGNQFLRFDPVTGHVDPKYPRDVRDYFMSCPGRGHAHR 854
+ Y RG + +FDPV +PR V F SC + R
Sbjct: 423 GFAYFLRGRLYWKFDPVKVKALEGFPRLVGPDFFSCTEAANTFR 466
>ref|XP_584877.3| PREDICTED: matrix metallopeptidase 11-like [Bos taurus].
Length = 466
Score = 60.1 bits (144), Expect = 5e-09
Identities = 62/224 (27%), Positives = 88/224 (39%), Gaps = 14/224 (6%)
Frame = +3
Query: 225 GPKHGAEGRNESKPDPDVT-ERCSDGWGFDASTLDEHGAMLFFKGPSVWA--GQNWTRG- 392
GP GA+ + +PD + C FDA+ G + FFK VW G G
Sbjct: 250 GPGTGADTNEIAPLEPDAPPDACQVS--FDAAATIR-GELFFFKAGFVWRLRGGRLQPGY 306
Query: 393 --LISERWKDAPSSVDAAFRRGHDSVFLIQGDKVWVYPPEKEKENPRSLQEEFPGVPSPL 566
L S W+ PS VDAAF ++ QG + WVY EK P L E SP+
Sbjct: 307 PALASRHWQGLPSPVDAAFEDAQGHIWFFQGAQYWVYDGEKPVLGPAPL-SELGLQGSPI 365
Query: 567 DAAVECHRGECQDEGVLFFQGTHTWFWDSTTKTTKERL------WPAV-GNCSSAMRWIS 725
AA+ + + FF+ W + + + + W V +A +
Sbjct: 366 HAALV---WGSEKNKIYFFRSGDYWRFQPSARRVDSPVPRRVTDWRGVPSEIDAAFQDAE 422
Query: 726 RY-YCFRGNQFLRFDPVTGHVDPKYPRDVRDYFMSCPGRGHAHR 854
+ Y RG + +FDPV +PR V F SC + R
Sbjct: 423 GFAYFLRGRLYWKFDPVKVKALEGFPRLVGPDFFSCTEAANTFR 466
>ref|NP_001193566.1| stromelysin-1 [Bos taurus].
Length = 477
Score = 57.0 bits (136), Expect = 4e-08
Identities = 52/185 (28%), Positives = 75/185 (40%), Gaps = 16/185 (8%)
Frame = +3
Query: 264 PDPDVTERCSDGWGFDA-STLDEHGAMLFFKGPSVWAGQNWTRG----LISERWKDAPSS 428
P+P C FDA STL G +LFFKG W T LIS W PS
Sbjct: 282 PEPGTPAACDPALSFDAVSTL--RGEILFFKGRHFWRKSFRTFEPEFHLISSFWPSLPSG 339
Query: 429 VDAAFR-RGHDSVFLIQGDKVW-VYPPEKEKENPRSLQE-EFPGVPSPLDAAVECHRGEC 599
+DAA+ D+VF+ +G++ W + E + PR + FP +DAA +
Sbjct: 340 IDAAYEVTSKDTVFIFKGNQFWAIRGNEMQAGYPRGIHTLGFPSTVRKIDAAF----SDK 395
Query: 600 QDEGVLFFQGTHTWFWDSTTKTTKERL-------WPAV-GNCSSAMRWISRYYCFRGNQF 755
+ + FF W +D ++ + +P V + YY F G+
Sbjct: 396 EKKKTYFFAEDKYWRFDEKRQSMEPGFPKQIVEDFPGVESEVDAVFEVFGFYYFFSGSSQ 455
Query: 756 LRFDP 770
FDP
Sbjct: 456 FEFDP 460
>ref|NP_001092477.1| matrix metalloproteinase-27 [Bos taurus].
Length = 510
Score = 52.4 bits (124), Expect = 1e-06
Identities = 49/186 (26%), Positives = 74/186 (39%), Gaps = 14/186 (7%)
Frame = +3
Query: 255 ESKPDPDVTERCSDGWGFDASTLDEHGAMLFFKGPSVWAGQ----NWTRGLISERWKDAP 422
E P + C FDA T M FFKG +W + LIS W P
Sbjct: 266 EKPKGPTLPHACDPDLTFDAITTFRREVM-FFKGRHIWRIYYDITDVEFELISSFWPSLP 324
Query: 423 SSVDAAFRRGHDSVFLIQGDKVWVYPPEKE-KENPRSLQE-EFPGVPSPLDAAVECHRGE 596
+ + AA+ D + + + D WV + P+S+ FP +DAAV C R
Sbjct: 325 ADIHAAYENPIDKILVFKDDNFWVIRGYAVLPDYPKSIYTLGFPRRVKKIDAAV-CDR-- 381
Query: 597 CQDEGVLFFQGTHTWFWDSTTKTTKE-------RLWPAVG-NCSSAMRWISRYYCFRGNQ 752
FF G W +D T+T + + +P +G +A + +Y FR ++
Sbjct: 382 -STRKTYFFVGIWCWRYDEVTQTMDKGYPRRVVKYFPGIGLRVDAAFQHKGFFYFFRRSK 440
Query: 753 FLRFDP 770
+DP
Sbjct: 441 QFEYDP 446
>ref|NP_777170.1| 72 kDa type IV collagenase precursor [Bos taurus].
Length = 661
Score = 50.8 bits (120), Expect = 3e-06
Identities = 40/180 (22%), Positives = 72/180 (40%), Gaps = 10/180 (5%)
Frame = +3
Query: 462 VFLIQGDKVW-VYPPEKEKENPRSLQEEFPGVPSPLDAAVECHRGECQDEGVLFFQGTHT 638
+F + +W P + P + +P +P +DA E + Q+E +FF G
Sbjct: 486 IFFFKDRFIWRTVTPRDKPTGPLLVATFWPELPEKIDAVYE----DPQEEKAVFFAGNEY 541
Query: 639 WFWDSTT-------KTTKERLWPAVGNCSSAMRWIS--RYYCFRGNQFLRFDPVTGHVDP 791
W + ++T T L P V +A W + Y F G++F R++ V +DP
Sbjct: 542 WVYSASTLERGYPKPLTSLGLPPGVQKVDAAFNWSKNKKTYIFAGDKFWRYNEVKKKMDP 601
Query: 792 KYPRDVRDYFMSCPGRGHAHRNATHHGDDRCSPDLVLTALLSDNHGATYAFRGTHYWRLD 971
+P+ + D + PD + + G +Y F+G +Y +L+
Sbjct: 602 GFPKLIADAW-------------------NAIPDNLDAVVDLQGGGHSYFFKGAYYLKLE 642
>ref|XP_002692352.1| PREDICTED: matrix metallopeptidase 24 (membrane-inserted) [Bos
taurus].
Length = 596
Score = 50.8 bits (120), Expect = 3e-06
Identities = 39/163 (23%), Positives = 62/163 (38%), Gaps = 18/163 (11%)
Frame = +3
Query: 396 ISERWKDAPSSVDAAFRRGHDSVFLIQGDKVWVYPPEKEKENPRSLQEEFPGVPSPLDAA 575
I + WK P+ +DAA+ R +GDK WV+ + PG P L
Sbjct: 369 IEQFWKGLPARIDAAYERADGRFVFFKGDKYWVFKEVTVE----------PGYPHSLGEL 418
Query: 576 VECHRGECQDEGV--------LFFQGTHTWFWDSTTKTTKE------RLWPAVGNCSSAM 713
C E D + FF+G W + + T +W +
Sbjct: 419 GSCLPREGIDTALRWEPVGKTYFFKGERYWRYSEERRATDPGYPKPITVWKGIPQAPQG- 477
Query: 714 RWISR----YYCFRGNQFLRFDPVTGHVDPKYPRDVRDYFMSC 830
+IS+ Y ++G + +FD V+P YPR++ +M C
Sbjct: 478 AFISKEGYYTYFYKGRDYWKFDNQKLSVEPGYPRNILRDWMGC 520
>ref|XP_616761.4| PREDICTED: matrix metallopeptidase 24 (membrane-inserted) [Bos
taurus].
Length = 568
Score = 50.8 bits (120), Expect = 3e-06
Identities = 39/163 (23%), Positives = 62/163 (38%), Gaps = 18/163 (11%)
Frame = +3
Query: 396 ISERWKDAPSSVDAAFRRGHDSVFLIQGDKVWVYPPEKEKENPRSLQEEFPGVPSPLDAA 575
I + WK P+ +DAA+ R +GDK WV+ + PG P L
Sbjct: 341 IEQFWKGLPARIDAAYERADGRFVFFKGDKYWVFKEVTVE----------PGYPHSLGEL 390
Query: 576 VECHRGECQDEGV--------LFFQGTHTWFWDSTTKTTKE------RLWPAVGNCSSAM 713
C E D + FF+G W + + T +W +
Sbjct: 391 GSCLPREGIDTALRWEPVGKTYFFKGERYWRYSEERRATDPGYPKPITVWKGIPQAPQG- 449
Query: 714 RWISR----YYCFRGNQFLRFDPVTGHVDPKYPRDVRDYFMSC 830
+IS+ Y ++G + +FD V+P YPR++ +M C
Sbjct: 450 AFISKEGYYTYFYKGRDYWKFDNQKLSVEPGYPRNILRDWMGC 492
>ref|XP_002697915.1| PREDICTED: matrix metalloproteinase 25 preproprotein-like [Bos
taurus].
Length = 674
Score = 50.4 bits (119), Expect = 4e-06
Identities = 43/176 (24%), Positives = 65/176 (36%), Gaps = 9/176 (5%)
Frame = +3
Query: 465 FLIQGDKVWVYPPEKEKENPRS--LQEEFPGVPSPLDAAVECHRGECQDEGVLFFQGTHT 638
F +G W P + +PR L + G+P+ + ++ D +L F G
Sbjct: 445 FFFKGPWFWRLQPSGQLVSPRPARLHRFWEGLPTQVKV-IQAAYARHPDGRILLFSGPQF 503
Query: 639 WFW-----DSTTKTTKERLWPAVGNCSSAMRWI--SRYYCFRGNQFLRFDPVTGHVDPKY 797
W + + + E P + W + Y RG Q+ R+D DP Y
Sbjct: 504 WSFQDRLLEGAARPLTELGLPPGTEVDAVFSWPLNGKTYLIRGRQYWRYDEAAARPDPGY 563
Query: 798 PRDVRDYFMSCPGRGHAHRNATHHGDDRCSPDLVLTALLSDNHGATYAFRGTHYWR 965
PRD+ + P +PD V + N G TY F+G HYWR
Sbjct: 564 PRDL-SLWEGAPS----------------APDDVTVS----NTGDTYFFKGLHYWR 598
>ref|XP_609577.4| PREDICTED: matrix metalloproteinase 25 [Bos taurus].
Length = 674
Score = 50.4 bits (119), Expect = 4e-06
Identities = 43/176 (24%), Positives = 65/176 (36%), Gaps = 9/176 (5%)
Frame = +3
Query: 465 FLIQGDKVWVYPPEKEKENPRS--LQEEFPGVPSPLDAAVECHRGECQDEGVLFFQGTHT 638
F +G W P + +PR L + G+P+ + ++ D +L F G
Sbjct: 445 FFFKGPWFWRLQPSGQLVSPRPARLHRFWEGLPTQVKV-IQAAYARHPDGRILLFSGPQF 503
Query: 639 WFW-----DSTTKTTKERLWPAVGNCSSAMRWI--SRYYCFRGNQFLRFDPVTGHVDPKY 797
W + + + E P + W + Y RG Q+ R+D DP Y
Sbjct: 504 WSFQDRLLEGAARPLTELGLPPGTEVDAVFSWPLNGKTYLIRGRQYWRYDEAAARPDPGY 563
Query: 798 PRDVRDYFMSCPGRGHAHRNATHHGDDRCSPDLVLTALLSDNHGATYAFRGTHYWR 965
PRD+ + P +PD V + N G TY F+G HYWR
Sbjct: 564 PRDL-SLWEGAPS----------------APDDVTVS----NTGDTYFFKGLHYWR 598
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 66,229,336
Number of extensions: 2081675
Number of successful extensions: 9979
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 9886
Number of HSP's successfully gapped: 10
Length of query: 497
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 391
Effective length of database: 14,174,046
Effective search space: 5542051986
Effective search space used: 5542051986
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007073
(1491 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_853676.1| PREDICTED: similar to hemopexin [Canis familiar... 711 0.0
Alignment gi|NP_001229661.1| stromelysin-3 [Canis lupus familiaris]. 64 5e-10
Alignment gi|NP_001002967.1| stromelysin-1 precursor [Canis lupus familia... 55 1e-07
Alignment gi|XP_848410.1| PREDICTED: similar to Matrix metalloproteinase-... 55 2e-07
Alignment gi|XP_542973.2| PREDICTED: similar to Matrix metalloproteinase-... 51 3e-06
Alignment gi|XP_852332.1| PREDICTED: similar to matrix metalloproteinase ... 50 4e-06
Alignment gi|XP_548256.2| PREDICTED: similar to matrix metalloproteinase ... 50 4e-06
Alignment gi|XP_535300.2| PREDICTED: similar to matrix metalloproteinase ... 50 6e-06
>ref|XP_853676.1| PREDICTED: similar to hemopexin [Canis familiaris].
Length = 458
Score = 711 bits (1836), Expect = 0.0
Identities = 330/461 (71%), Positives = 373/461 (80%), Gaps = 9/461 (1%)
Frame = +3
Query: 135 MARALGTAGAPWLLGLCCSLAIAHPLSLTAGPKHGAEGRNESKPDPDVTERCSDGWGFDA 314
MA ALG LLGLC SLA+AHPLS +G EG + ++ PDVTE C DGW FDA
Sbjct: 1 MAWALG------LLGLCWSLAVAHPLSPDGTHGNGTEGGSGARVKPDVTELCLDGWSFDA 54
Query: 315 STLDEHGAMLFFKGPSVWAGQNWTRGLISERWKDAPSSVDAAFRRGHDSVFLIQGDKVWV 494
+TLDEHGAMLFFKG VW W R LISERW++ S VDAAFRRGH+SVFL++GDKVWV
Sbjct: 55 TTLDEHGAMLFFKGEFVWKSHRWVRELISERWRNLTSPVDAAFRRGHNSVFLLKGDKVWV 114
Query: 495 YPPEKEKEN-PRSLQEEFPGVPSPLDAAVECHRGECQDEGVLFFQGTHTWFWDSTTKTTK 671
YPPEK+++ P+ LQEEFPG+PSP+DAAVECHRGECQDEGVLFF+G TWFWD TT T K
Sbjct: 115 YPPEKKEQGYPKLLQEEFPGIPSPVDAAVECHRGECQDEGVLFFKGNQTWFWDLTTGTKK 174
Query: 672 ERLWPAVGNCSSAMRWISRYYCFRGNQFLRFDPVTGHVDPKYPRDVRDYFMSCPGRGHAH 851
ER WPAVG+CSSA+RW+SRYYCFRGNQFLRF+PVTG V PKYP DVRDYF+ CPGRGH H
Sbjct: 175 ERSWPAVGHCSSALRWLSRYYCFRGNQFLRFNPVTGEVLPKYPLDVRDYFIPCPGRGHGH 234
Query: 852 RNATHHGDD--------RCSPDLVLTALLSDNHGATYAFRGTHYWRLDTSRDGWHSWPID 1007
RN T HG+D RCS LVL+ALL+DNHGATYAF G+HYWRLDTSRDGWHSWPI
Sbjct: 235 RNGTGHGNDTHHGREDMRCSAFLVLSALLTDNHGATYAFSGSHYWRLDTSRDGWHSWPIV 294
Query: 1008 HQWSHGPSAVDAAFSWDDKLYLIQGTQVYIFLTKAGYTLVDNYPKQLEKELGSPHGISLD 1187
HQW GPS VDAAFSWD+K+YLIQGTQVYIFLTK GYTLVD YPK+LEKE GSPHGI+L+
Sbjct: 295 HQWPQGPSTVDAAFSWDNKVYLIQGTQVYIFLTKGGYTLVDGYPKRLEKEFGSPHGINLE 354
Query: 1188 AVDATFVCPGTSRLHVMAGRKLWWLDLSLGAQGPWTELPWPHEKVDAALCTEKSLGPNSC 1367
VDA F CPGTSRLH+ AGR LWWLDL LGAQ WTE+PWPHEKVD ALC EKSLGPNSC
Sbjct: 355 TVDAAFTCPGTSRLHIAAGRHLWWLDLKLGAQATWTEVPWPHEKVDGALCIEKSLGPNSC 414
Query: 1368 SASGLGLYIVHGPHVYCYKNLEKLVSVKAPPPPQNRNSLVG 1490
SA+G GLY++HG +YCY ++EKL + K+ P PQ SL+G
Sbjct: 415 SANGPGLYLIHGSDLYCYSDVEKLSTAKSLPQPQRVKSLLG 455
>ref|NP_001229661.1| stromelysin-3 [Canis lupus familiaris].
Length = 489
Score = 63.5 bits (153), Expect = 5e-10
Identities = 64/219 (29%), Positives = 86/219 (39%), Gaps = 17/219 (7%)
Frame = +3
Query: 225 GPKHGAEGRN----ESKPDPDVTERCSDGWGFDASTLDEHGAMLFFKGPSVWA--GQNWT 386
GP+ G + E + PD E D ST+ G + FFK VW G
Sbjct: 273 GPQAGVDTNEIAPLEPEAPPDACEITFDA----VSTI--RGELFFFKAGFVWRLRGGRLQ 326
Query: 387 RG---LISERWKDAPSSVDAAFRRGHDSVFLIQGDKVWVYPPEKEKENPRSLQEEFPGVP 557
G L S W+ PS VDAAF ++ QG + WVY EK P L E +
Sbjct: 327 PGYPALASRHWQGLPSPVDAAFEDAQGHIWFFQGAQYWVYNGEKPVLGPAPL-SELGLLG 385
Query: 558 SPLDAAVECHRGECQDEGVLFFQGTHTWFWDSTTKTTKERL------WPAV-GNCSSAMR 716
SP+ AA+ + + FF G W + +T+ + W V +A R
Sbjct: 386 SPIQAALAWGP---EKNKIYFFGGRDYWRFHLSTRRVDSPVPRRATDWRGVPSEIDAAFR 442
Query: 717 WISRY-YCFRGNQFLRFDPVTGHVDPKYPRDVRDYFMSC 830
Y Y RG + +FDPV +PR V F C
Sbjct: 443 DADGYAYFLRGRLYWKFDPVKVKALEGFPRLVGPDFFGC 481
>ref|NP_001002967.1| stromelysin-1 precursor [Canis lupus familiaris].
Length = 478
Score = 55.5 bits (132), Expect = 1e-07
Identities = 54/185 (29%), Positives = 75/185 (40%), Gaps = 16/185 (8%)
Frame = +3
Query: 264 PDPDVTERCSDGWGFDA-STLDEHGAMLFFKGPSVWAGQNWTRG----LISERWKDAPSS 428
P P C FDA STL G LFFK W T LIS W PS
Sbjct: 283 PGPGTPAACDPTLSFDAISTL--RGEFLFFKDRHFWRKSLRTLEPGFYLISSFWPSLPSG 340
Query: 429 VDAAFRR-GHDSVFLIQGDKVW-VYPPEKEKENPRSLQE-EFPGVPSPLDAAVECHRGEC 599
+DAA+ D VF+ +G++ W + E + P+ + FP +DAAV +
Sbjct: 341 LDAAYEETSKDIVFIFKGNQFWAMRGTEVQAGYPKGIHTLGFPPTVKKIDAAV----FDK 396
Query: 600 QDEGVLFFQGTHTWFWDSTTKTTKERL-------WPAV-GNCSSAMRWISRYYCFRGNQF 755
+ + FF G W +D ++ + +P V +A YY F G+
Sbjct: 397 EKKKTYFFVGDKYWRFDEKRQSMEPGFPKQIAEDFPGVDSKVDAAFEAFGFYYFFNGSSQ 456
Query: 756 LRFDP 770
L FDP
Sbjct: 457 LEFDP 461
>ref|XP_848410.1| PREDICTED: similar to Matrix metalloproteinase-19 precursor
(MMP-19) (Matrix metalloproteinase RASI) (MMP-18) [Canis
familiaris].
Length = 547
Score = 54.7 bits (130), Expect = 2e-07
Identities = 60/203 (29%), Positives = 83/203 (40%), Gaps = 14/203 (6%)
Frame = +3
Query: 264 PDPDVTERCSDGWGFDASTLDEHGAMLFFKGPSVWAGQNWTRG---LISERWKDAPSSVD 434
PDP CS DA L G FKG VW + G +S W+ P ++D
Sbjct: 286 PDP-----CSGE--LDAIMLGPRGKTYAFKGNYVWTVTDSGLGPLFQVSALWEGLPGNLD 338
Query: 435 AAFRRGHDS-VFLIQGDKVWVYPPEKEKEN-PRSLQEEFPGVPSPLDAAVECHRGECQDE 608
AA + +GDKVW Y K P+ L P LDAA+ ++
Sbjct: 339 AAVYSPRTQWIHFFKGDKVWRYINFKRSPGFPKKLNRIEPN----LDAALYWPF----NQ 390
Query: 609 GVLFFQGTHTWFWDSTTKT-------TKERLWPAV-GNCSSAMRW-ISRYYCFRGNQFLR 761
V F+G+ W WD +T +RL+ V S+A+ W R Y F+ Q+ R
Sbjct: 391 KVFLFKGSGYWQWDELARTDFSHYPKPIKRLFTGVPDQPSAAVSWRDGRVYFFKDKQYWR 450
Query: 762 FDPVTGHVDPKYPRDVRDYFMSC 830
+ V+ YPRD +M C
Sbjct: 451 LNRQL-RVEKGYPRDTAPNWMHC 472
>ref|XP_542973.2| PREDICTED: similar to Matrix metalloproteinase-24 precursor
(MMP-24) (Membrane-type matrix metalloproteinase 5)
(MT-MMP 5) (Membrane-type-5 matrix metalloproteinase)
(MT5-MMP) [Canis familiaris].
Length = 626
Score = 50.8 bits (120), Expect = 3e-06
Identities = 39/163 (23%), Positives = 62/163 (38%), Gaps = 18/163 (11%)
Frame = +3
Query: 396 ISERWKDAPSSVDAAFRRGHDSVFLIQGDKVWVYPPEKEKENPRSLQEEFPGVPSPLDAA 575
I + WK P+ +DAA+ R +GDK WV+ + PG P L
Sbjct: 399 IEQFWKGLPARIDAAYERADGRFVFFKGDKYWVFKEVTVE----------PGYPHSLGEL 448
Query: 576 VECHRGECQDEGV--------LFFQGTHTWFWDSTTKTTKE------RLWPAVGNCSSAM 713
C E D + FF+G W + + T +W +
Sbjct: 449 GSCLPREGIDTALRWEPVGKTYFFKGERYWRYSEERRATDPGYPKPITVWKGIPQAPQG- 507
Query: 714 RWISR----YYCFRGNQFLRFDPVTGHVDPKYPRDVRDYFMSC 830
+IS+ Y ++G + +FD V+P YPR++ +M C
Sbjct: 508 AFISKEGYYTYFYKGRDYWKFDNQKLSVEPGYPRNILRDWMGC 550
>ref|XP_852332.1| PREDICTED: similar to matrix metalloproteinase 17 preproprotein
[Canis familiaris].
Length = 661
Score = 50.4 bits (119), Expect = 4e-06
Identities = 61/242 (25%), Positives = 87/242 (35%), Gaps = 31/242 (12%)
Frame = +3
Query: 249 RNESKPDPDVTERCSDGWGFDASTLDEHGAMLFFKGPSVWAGQNWTRG--LISER----- 407
R+ + P DV RCS FDA G FFKG W TR L+S +
Sbjct: 385 RSSTLPRKDVPHRCSTD--FDA-VAQIRGEAFFFKGKYFW---RLTRDGHLVSLQPAQMH 438
Query: 408 --WKDAP---SSVDAAFRRGHD-SVFLIQGDKVWVYPPEKEKENPRSLQEEFPGVPSPLD 569
W+ P SVDA + R D + +GD+ WV+ +E +F P +D
Sbjct: 439 RFWRGLPLQLDSVDAVYERTSDHKIVFFKGDRYWVFKDNNVEEGYPRPVSDFGLPPGGVD 498
Query: 570 AAVECHRGECQDEGVLFFQGTHTWFWDSTTK------TTKERLWPAV-GNCSSAMRWI-S 725
AA ++ FF+ W +D T+ + W + AM W
Sbjct: 499 AAFSW----SHNDKTYFFKDQLYWRFDEHTRRMDPGHPARSPPWRGIPSTLDDAMCWSDG 554
Query: 726 RYYCFRGNQFLRFDPVTGHVDPKYPRDVRDYFMSC----------PGRGHAHRNATHHGD 875
Y FRG ++ + V P YP+ ++ C G AH H
Sbjct: 555 AAYFFRGKEYWKVLDSELEVAPGYPQSTARDWLVCRDLQADPEGAGGEAGAHARPGQHSQ 614
Query: 876 DR 881
R
Sbjct: 615 SR 616
>ref|XP_548256.2| PREDICTED: similar to matrix metalloproteinase 28 preproprotein
isoform 1 [Canis familiaris].
Length = 520
Score = 50.4 bits (119), Expect = 4e-06
Identities = 49/209 (23%), Positives = 76/209 (36%), Gaps = 11/209 (5%)
Frame = +3
Query: 423 SSVDAAFRRGHDSVFLIQGDKVWVYPPEKEKENPRSLQEEFPGVPSPLD-AAVECHRGEC 599
SS DA G +++ QG W P+ P LQE + G+P ++ AAV G+
Sbjct: 326 SSFDAITVDGQQRLYIFQGSHFWEVAPDGNVSEPLPLQERWAGLPPHIEAAAVSLDSGDF 385
Query: 600 QDEGVLFFQGTHTW-------FWDSTTKTTKERLWPAVGNCSSAMRWISRYYCFRGNQFL 758
FF+G+ W W S L P + + + R F+G ++
Sbjct: 386 H-----FFKGSRCWRFRGPKPVWGSPQLCRAGGL-PRHPDAALFFPPLGRLVLFKGARYY 439
Query: 759 RFDPVTGHVDPKYPRDVRDYFMSCPGRGHAHRNATHHGDDRCSPDLVLTALLSDNHGATY 938
V+P YPR ++D+ G + + L G+
Sbjct: 440 VLARDGLQVEPYYPRGLQDW-------GGVPKE--------------VNGALPRPDGSII 478
Query: 939 AFRGTHYWRLDTSR---DGWHSWPIDHQW 1016
FR YWRLD ++ W W + W
Sbjct: 479 FFRDDRYWRLDQAKLQATAWGRWAAELPW 507
>ref|XP_535300.2| PREDICTED: similar to matrix metalloproteinase 2 preproprotein
[Canis familiaris].
Length = 612
Score = 50.1 bits (118), Expect = 6e-06
Identities = 40/180 (22%), Positives = 71/180 (39%), Gaps = 10/180 (5%)
Frame = +3
Query: 462 VFLIQGDKVW-VYPPEKEKENPRSLQEEFPGVPSPLDAAVECHRGECQDEGVLFFQGTHT 638
+F + +W P + P + +P +P +DA E Q+E +FF G
Sbjct: 437 IFFFKDRFIWRTVTPRNKPMGPLLVATFWPELPEKIDAVYEAP----QEEKAVFFAGNEY 492
Query: 639 WFWDSTT-------KTTKERLWPAVGNCSSAMRWIS--RYYCFRGNQFLRFDPVTGHVDP 791
W + ++T T L P V +A W + Y F G++F R++ V +DP
Sbjct: 493 WVYSASTLERGYPKPLTSLGLPPDVQRVDAAFNWSKNKKTYIFAGDKFWRYNEVKKKMDP 552
Query: 792 KYPRDVRDYFMSCPGRGHAHRNATHHGDDRCSPDLVLTALLSDNHGATYAFRGTHYWRLD 971
+P+ + D + PD + + G +Y F+G +Y +L+
Sbjct: 553 GFPKLIADAW-------------------NAIPDNLDAVVDLQGSGHSYFFKGAYYLKLE 593
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 68,986,623
Number of extensions: 2144517
Number of successful extensions: 10118
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 10029
Number of HSP's successfully gapped: 9
Length of query: 497
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 390
Effective length of database: 15,307,552
Effective search space: 5969945280
Effective search space used: 5969945280
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007073
(1491 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_000604.1| hemopexin precursor [Homo sapiens]. 724 0.0
Alignment gi|NP_005931.2| stromelysin-3 preproprotein [Homo sapiens]. 64 4e-10
Alignment gi|NP_057239.4| matrix metalloproteinase-17 preproprotein [Homo... 59 1e-08
Alignment gi|NP_071913.1| matrix metalloproteinase-25 preproprotein [Homo... 57 6e-08
Alignment gi|NP_002416.1| stromelysin-2 preproprotein [Homo sapiens]. 56 8e-08
Alignment gi|NP_006681.1| matrix metalloproteinase-24 preproprotein [Homo... 51 3e-06
Alignment gi|NP_001121363.1| 72 kDa type IV collagenase isoform b [Homo s... 50 7e-06
Alignment gi|NP_004521.1| 72 kDa type IV collagenase isoform a preproprot... 50 7e-06
>ref|NP_000604.1| hemopexin precursor [Homo sapiens].
Length = 462
Score = 724 bits (1870), Expect = 0.0
Identities = 335/461 (72%), Positives = 374/461 (81%), Gaps = 9/461 (1%)
Frame = +3
Query: 135 MARALGTAGAPWLLGLCCSLAIAHPLSLTAGPKHGAEGRNESKPDPDVTERCSDGWGFDA 314
MAR LG A L LC SLAIA PL T+ HG E+KPDPDVTERCSDGW FDA
Sbjct: 1 MARVLGAPVALGLWSLCWSLAIATPLPPTSA--HGNVAEGETKPDPDVTERCSDGWSFDA 58
Query: 315 STLDEHGAMLFFKGPSVWAGQNWTRGLISERWKDAPSSVDAAFRRGHDSVFLIQGDKVWV 494
+TLD++G MLFFKG VW W R LISERWK+ PS VDAAFR+GH+SVFLI+GDKVWV
Sbjct: 59 TTLDDNGTMLFFKGEFVWKSHKWDRELISERWKNFPSPVDAAFRQGHNSVFLIKGDKVWV 118
Query: 495 YPPEK-EKENPRSLQEEFPGVPSPLDAAVECHRGECQDEGVLFFQGTHTWFWDSTTKTTK 671
YPPEK EK P+ LQ+EFPG+PSPLDAAVECHRGECQ EGVLFFQG WFWD T T K
Sbjct: 119 YPPEKKEKGYPKLLQDEFPGIPSPLDAAVECHRGECQAEGVLFFQGDREWFWDLATGTMK 178
Query: 672 ERLWPAVGNCSSAMRWISRYYCFRGNQFLRFDPVTGHVDPKYPRDVRDYFMSCPGRGHAH 851
ER WPAVGNCSSA+RW+ RYYCF+GNQFLRFDPV G V P+YPRDVRDYFM CPGRGH H
Sbjct: 179 ERSWPAVGNCSSALRWLGRYYCFQGNQFLRFDPVRGEVPPRYPRDVRDYFMPCPGRGHGH 238
Query: 852 RNATHHGDD--------RCSPDLVLTALLSDNHGATYAFRGTHYWRLDTSRDGWHSWPID 1007
RN T HG+ RCSP LVL+AL SDNHGATYAF GTHYWRLDTSRDGWHSWPI
Sbjct: 239 RNGTGHGNSTHHGPEYMRCSPHLVLSALTSDNHGATYAFSGTHYWRLDTSRDGWHSWPIA 298
Query: 1008 HQWSHGPSAVDAAFSWDDKLYLIQGTQVYIFLTKAGYTLVDNYPKQLEKELGSPHGISLD 1187
HQW GPSAVDAAFSW++KLYL+QGTQVY+FLTK GYTLV YPK+LEKE+G+PHGI LD
Sbjct: 299 HQWPQGPSAVDAAFSWEEKLYLVQGTQVYVFLTKGGYTLVSGYPKRLEKEVGTPHGIILD 358
Query: 1188 AVDATFVCPGTSRLHVMAGRKLWWLDLSLGAQGPWTELPWPHEKVDAALCTEKSLGPNSC 1367
+VDA F+CPG+SRLH+MAGR+LWWLDL GAQ WTELPWPHEKVD ALC EKSLGPNSC
Sbjct: 359 SVDAAFICPGSSRLHIMAGRRLWWLDLKSGAQATWTELPWPHEKVDGALCMEKSLGPNSC 418
Query: 1368 SASGLGLYIVHGPHVYCYKNLEKLVSVKAPPPPQNRNSLVG 1490
SA+G GLY++HGP++YCY ++EKL + KA P PQN SL+G
Sbjct: 419 SANGPGLYLIHGPNLYCYSDVEKLNAAKALPQPQNVTSLLG 459
>ref|NP_005931.2| stromelysin-3 preproprotein [Homo sapiens].
Length = 488
Score = 63.9 bits (154), Expect = 4e-10
Identities = 63/216 (29%), Positives = 88/216 (40%), Gaps = 14/216 (6%)
Frame = +3
Query: 225 GPKHGAEGRNESKPDPDVTERCSDGWGFDA-STLDEHGAMLFFKGPSVWA--GQNWTRG- 392
GP+ G + + +PD + FDA ST+ G + FFK VW G G
Sbjct: 272 GPQAGIDTNEIAPLEPDAPPDACEA-SFDAVSTI--RGELFFFKAGFVWRLRGGQLQPGY 328
Query: 393 --LISERWKDAPSSVDAAFRRGHDSVFLIQGDKVWVYPPEKEKENPRSLQEEFPGVPSPL 566
L S W+ PS VDAAF ++ QG + WVY EK P L E V P+
Sbjct: 329 PALASRHWQGLPSPVDAAFEDAQGHIWFFQGAQYWVYDGEKPVLGPAPL-TELGLVRFPV 387
Query: 567 DAAVECHRGECQDEGVLFFQGTHTWFWDSTTKTTKERL------WPAV-GNCSSAMRWIS 725
AA+ + + FF+G W + +T+ + W V +A +
Sbjct: 388 HAALVWGP---EKNKIYFFRGRDYWRFHPSTRRVDSPVPRRATDWRGVPSEIDAAFQDAD 444
Query: 726 RY-YCFRGNQFLRFDPVTGHVDPKYPRDVRDYFMSC 830
Y Y RG + +FDPV +PR V F C
Sbjct: 445 GYAYFLRGRLYWKFDPVKVKALEGFPRLVGPDFFGC 480
>ref|NP_057239.4| matrix metalloproteinase-17 preproprotein [Homo sapiens].
Length = 603
Score = 58.9 bits (141), Expect = 1e-08
Identities = 58/215 (26%), Positives = 84/215 (39%), Gaps = 19/215 (8%)
Frame = +3
Query: 243 EGRNESKPDPDVTERCSDGWGFDASTLDEHGAMLFFKGPSVWAGQNWTRGLISER----- 407
+ R+ + P DV RCS FDA G FFKG W R L+S +
Sbjct: 317 DNRSSAPPRKDVPHRCSTH--FDA-VAQIRGEAFFFKGKYFWRLTR-DRHLVSLQPAQMH 372
Query: 408 --WKDAP---SSVDAAFRRGHD-SVFLIQGDKVWVYPPEKEKENPRSLQEEFPGVPSPLD 569
W+ P SVDA + R D + +GD+ WV+ +E +F P +D
Sbjct: 373 RFWRGLPLHLDSVDAVYERTSDHKIVFFKGDRYWVFKDNNVEEGYPRPVSDFSLPPGGID 432
Query: 570 AAVECHRGECQDEGVLFFQGTHTWFWDSTTK------TTKERLWPAV-GNCSSAMRWI-S 725
AA ++ FF+ W +D T+ + LW V AMRW
Sbjct: 433 AAFSW----AHNDRTYFFKDQLYWRYDDHTRHMDPGYPAQSPLWRGVPSTLDDAMRWSDG 488
Query: 726 RYYCFRGNQFLRFDPVTGHVDPKYPRDVRDYFMSC 830
Y FRG ++ + V P YP+ ++ C
Sbjct: 489 ASYFFRGQEYWKVLDGELEVAPGYPQSTARDWLVC 523
>ref|NP_071913.1| matrix metalloproteinase-25 preproprotein [Homo sapiens].
Length = 562
Score = 56.6 bits (135), Expect = 6e-08
Identities = 74/267 (27%), Positives = 96/267 (35%), Gaps = 11/267 (4%)
Frame = +3
Query: 198 IAHPLSLTAGPKHGAEGRNESKPDPDVTERCSDGWGFDASTLDEHGAMLFFKGPSVWAGQ 377
+A P A P H + S P PD RC FDA + G FFKGP W Q
Sbjct: 295 LAPPPQPPASPTH-----SPSFPIPD---RCEGN--FDAIA-NIRGETFFFKGPWFWRLQ 343
Query: 378 NWTRGLISER-------WKDAPSSV---DAAFRRGHDS-VFLIQGDKVWVYPPEKEKENP 524
+ L+S R W+ P+ V AA+ R D + L G + WV+ + +
Sbjct: 344 P-SGQLVSPRPARLHRFWEGLPAQVRVVQAAYARHRDGRILLFSGPQFWVFQDRQLEGGA 402
Query: 525 RSLQEEFPGVPSPLDAAVECHRGECQDEGVLFFQGTHTWFWDSTTKTTKERLWPAVGNCS 704
R L E G+P GE D + W KT
Sbjct: 403 RPLTEL--GLPP----------GEEVDA---------VFSWPQNGKT------------- 428
Query: 705 SAMRWISRYYCFRGNQFLRFDPVTGHVDPKYPRDVRDYFMSCPGRGHAHRNATHHGDDRC 884
Y RG Q+ R+D DP YPRD+ + + P
Sbjct: 429 ---------YLVRGRQYWRYDEAAARPDPGYPRDLSLWEGAPP----------------- 462
Query: 885 SPDLVLTALLSDNHGATYAFRGTHYWR 965
SPD V + N G TY F+G HYWR
Sbjct: 463 SPDDVTVS----NAGDTYFFKGAHYWR 485
>ref|NP_002416.1| stromelysin-2 preproprotein [Homo sapiens].
Length = 476
Score = 56.2 bits (134), Expect = 8e-08
Identities = 49/182 (26%), Positives = 79/182 (43%), Gaps = 16/182 (8%)
Frame = +3
Query: 273 DVTERCSDGWGFDA-STLDEHGAMLFFKGPSVWAGQNWTRG----LISERWKDAPSSVDA 437
++ +C FDA STL G LFFK W +W LIS W PS +DA
Sbjct: 284 EMPAKCDPALSFDAISTL--RGEYLFFKDRYFWRRSHWNPEPEFHLISAFWPSLPSYLDA 341
Query: 438 AFR-RGHDSVFLIQGDKVW-VYPPEKEKENPRSLQE-EFPGVPSPLDAAVECHRGECQDE 608
A+ D+VF+ +G++ W + E + PR + FP +DAAV + + +
Sbjct: 342 AYEVNSRDTVFIFKGNEFWAIRGNEVQAGYPRGIHTLGFPPTIRKIDAAV----SDKEKK 397
Query: 609 GVLFFQGTHTWFWDSTTKTTKERL-------WPAV-GNCSSAMRWISRYYCFRGNQFLRF 764
FF W +D +++ ++ +P V + ++ +Y F G+ F
Sbjct: 398 KTYFFAADKYWRFDENSQSMEQGFPRLIADDFPGVEPKVDAVLQAFGFFYFFSGSSQFEF 457
Query: 765 DP 770
DP
Sbjct: 458 DP 459
>ref|NP_006681.1| matrix metalloproteinase-24 preproprotein [Homo sapiens].
Length = 645
Score = 50.8 bits (120), Expect = 3e-06
Identities = 39/163 (23%), Positives = 62/163 (38%), Gaps = 18/163 (11%)
Frame = +3
Query: 396 ISERWKDAPSSVDAAFRRGHDSVFLIQGDKVWVYPPEKEKENPRSLQEEFPGVPSPLDAA 575
I + WK P+ +DAA+ R +GDK WV+ + PG P L
Sbjct: 418 IEQFWKGLPARIDAAYERADGRFVFFKGDKYWVFKEVTVE----------PGYPHSLGEL 467
Query: 576 VECHRGECQDEGV--------LFFQGTHTWFWDSTTKTTKE------RLWPAVGNCSSAM 713
C E D + FF+G W + + T +W +
Sbjct: 468 GSCLPREGIDTALRWEPVGKTYFFKGERYWRYSEERRATDPGYPKPITVWKGIPQAPQG- 526
Query: 714 RWISR----YYCFRGNQFLRFDPVTGHVDPKYPRDVRDYFMSC 830
+IS+ Y ++G + +FD V+P YPR++ +M C
Sbjct: 527 AFISKEGYYTYFYKGRDYWKFDNQKLSVEPGYPRNILRDWMGC 569
>ref|NP_001121363.1| 72 kDa type IV collagenase isoform b [Homo sapiens].
Length = 610
Score = 49.7 bits (117), Expect = 7e-06
Identities = 40/180 (22%), Positives = 71/180 (39%), Gaps = 10/180 (5%)
Frame = +3
Query: 462 VFLIQGDKVW-VYPPEKEKENPRSLQEEFPGVPSPLDAAVECHRGECQDEGVLFFQGTHT 638
+F + +W P + P + +P +P +DA E Q+E +FF G
Sbjct: 435 IFFFKDRFIWRTVTPRDKPMGPLLVATFWPELPEKIDAVYEAP----QEEKAVFFAGNEY 490
Query: 639 WFWDSTT-------KTTKERLWPAVGNCSSAMRWIS--RYYCFRGNQFLRFDPVTGHVDP 791
W + ++T T L P V +A W + Y F G++F R++ V +DP
Sbjct: 491 WIYSASTLERGYPKPLTSLGLPPDVQRVDAAFNWSKNKKTYIFAGDKFWRYNEVKKKMDP 550
Query: 792 KYPRDVRDYFMSCPGRGHAHRNATHHGDDRCSPDLVLTALLSDNHGATYAFRGTHYWRLD 971
+P+ + D + PD + + G +Y F+G +Y +L+
Sbjct: 551 GFPKLIADAW-------------------NAIPDNLDAVVDLQGGGHSYFFKGAYYLKLE 591
>ref|NP_004521.1| 72 kDa type IV collagenase isoform a preproprotein [Homo sapiens].
Length = 660
Score = 49.7 bits (117), Expect = 7e-06
Identities = 40/180 (22%), Positives = 71/180 (39%), Gaps = 10/180 (5%)
Frame = +3
Query: 462 VFLIQGDKVW-VYPPEKEKENPRSLQEEFPGVPSPLDAAVECHRGECQDEGVLFFQGTHT 638
+F + +W P + P + +P +P +DA E Q+E +FF G
Sbjct: 485 IFFFKDRFIWRTVTPRDKPMGPLLVATFWPELPEKIDAVYEAP----QEEKAVFFAGNEY 540
Query: 639 WFWDSTT-------KTTKERLWPAVGNCSSAMRWIS--RYYCFRGNQFLRFDPVTGHVDP 791
W + ++T T L P V +A W + Y F G++F R++ V +DP
Sbjct: 541 WIYSASTLERGYPKPLTSLGLPPDVQRVDAAFNWSKNKKTYIFAGDKFWRYNEVKKKMDP 600
Query: 792 KYPRDVRDYFMSCPGRGHAHRNATHHGDDRCSPDLVLTALLSDNHGATYAFRGTHYWRLD 971
+P+ + D + PD + + G +Y F+G +Y +L+
Sbjct: 601 GFPKLIADAW-------------------NAIPDNLDAVVDLQGGGHSYFFKGAYYLKLE 641
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 67,443,932
Number of extensions: 2079840
Number of successful extensions: 9369
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 9292
Number of HSP's successfully gapped: 8
Length of query: 497
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 390
Effective length of database: 14,770,016
Effective search space: 5760306240
Effective search space used: 5760306240
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007073
(1491 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_059067.2| hemopexin precursor [Mus musculus]. 634 0.0
Alignment gi|NP_032632.1| stromelysin-3 precursor [Mus musculus]. 64 2e-10
Alignment gi|NP_062344.1| stromelysin-2 precursor [Mus musculus]. 62 2e-09
Alignment gi|NP_001157669.1| matrix metalloproteinase-19 isoform 2 [Mus m... 51 2e-06
Alignment gi|NP_067387.1| matrix metalloproteinase-19 isoform 1 [Mus musc... 51 2e-06
Alignment gi|NP_034939.1| stromelysin-1 preproprotein [Mus musculus]. 51 2e-06
Alignment gi|NP_034938.3| matrix metalloproteinase-24 [Mus musculus]. 51 3e-06
Alignment gi|NP_032636.1| 72 kDa type IV collagenase precursor [Mus muscu... 50 6e-06
>ref|NP_059067.2| hemopexin precursor [Mus musculus].
Length = 460
Score = 634 bits (1635), Expect = 0.0
Identities = 300/461 (65%), Positives = 349/461 (75%), Gaps = 9/461 (1%)
Frame = +3
Query: 135 MARALGTAGAPWLLGLCCSLAIAHPLSLTAGPKHGAEGRNESKPDPDVTERCSDGWGFDA 314
MAR LLGLC SLA+A PL G AE N +KPD DV E C D W FDA
Sbjct: 1 MARTAVALNILVLLGLCWSLAVASPLPTANG--RVAEVENGTKPDSDVPEHCLDTWSFDA 58
Query: 315 STLDEHGAMLFFKGPSVWAGQNWTRGLISERWKDAPSSVDAAFRRGHDSVFLIQGDKVWV 494
+T+D +G MLFFKG VW G + TR LIS RWK+ +SVDAAFR G DSVFLI+ DKVWV
Sbjct: 59 ATMDHNGTMLFFKGEFVWRGHSGTRELISARWKNPITSVDAAFR-GPDSVFLIKEDKVWV 117
Query: 495 YPPEKEKEN--PRSLQEEFPGVPSPLDAAVECHRGECQDEGVLFFQGTHTWFWDSTTKTT 668
YPPEK KEN P+ QEEFPG+P P DAAVECHRGECQ EGVLFFQG WFWD T+T
Sbjct: 118 YPPEK-KENGYPKLFQEEFPGIPYPPDAAVECHRGECQSEGVLFFQGNRKWFWDFATRTQ 176
Query: 669 KERLWPAVGNCSSAMRWISRYYCFRGNQFLRFDPVTGHVDPKYPRDVRDYFMSCPGRGH- 845
KER W VGNC++A+RW+ RYYCF+GN+FLRF+PVTG V P+YP D RDYF+SCPGRGH
Sbjct: 177 KERSWSTVGNCTAALRWLERYYCFQGNKFLRFNPVTGEVPPRYPLDARDYFVSCPGRGHG 236
Query: 846 ------AHRNATHHGDDRCSPDLVLTALLSDNHGATYAFRGTHYWRLDTSRDGWHSWPID 1007
AH N+TH RCSPD LTALLSD+ GATYAF G+HYWRLD+SRDGWHSWPI
Sbjct: 237 RPRNGTAHGNSTHPMHSRCSPDPGLTALLSDHRGATYAFTGSHYWRLDSSRDGWHSWPIA 296
Query: 1008 HQWSHGPSAVDAAFSWDDKLYLIQGTQVYIFLTKAGYTLVDNYPKQLEKELGSPHGISLD 1187
H W GPS VDAAFSWDDK+YLIQGTQVY+FLTK G LV YPK+LEKELGSP GISL+
Sbjct: 297 HHWPQGPSTVDAAFSWDDKVYLIQGTQVYVFLTKGGNNLVSGYPKRLEKELGSPPGISLE 356
Query: 1188 AVDATFVCPGTSRLHVMAGRKLWWLDLSLGAQGPWTELPWPHEKVDAALCTEKSLGPNSC 1367
+DA F CPG+SRL+V +GR+LWWLDL GAQ WTE+ WPHEKVD ALC +KSLGPN+C
Sbjct: 357 TIDAAFSCPGSSRLYVSSGRRLWWLDLKSGAQATWTEVSWPHEKVDGALCLDKSLGPNTC 416
Query: 1368 SASGLGLYIVHGPHVYCYKNLEKLVSVKAPPPPQNRNSLVG 1490
S++G LY +HGP++YCY +++KL + K+ P PQ NS++G
Sbjct: 417 SSNGSSLYFIHGPNLYCYSSIDKLNAAKSLPQPQKVNSILG 457
>ref|NP_032632.1| stromelysin-3 precursor [Mus musculus].
Length = 492
Score = 64.3 bits (155), Expect = 2e-10
Identities = 66/223 (29%), Positives = 89/223 (39%), Gaps = 13/223 (5%)
Frame = +3
Query: 201 AHPLSLTAGPKHGAEGRNESKPDPDVTERCSDGWGFDASTLDEHGAMLFFKGPSVW---A 371
A LS AG E + PDV E D ST+ G + FFK VW +
Sbjct: 272 APTLSSQAGTDTNEIALLEPETPPDVCETSFDA----VSTI--RGELFFFKAGFVWRLRS 325
Query: 372 G--QNWTRGLISERWKDAPSSVDAAFRRGHDSVFLIQGDKVWVYPPEKEKENPRSLQEEF 545
G Q L S W+ PS VDAAF ++ QG + WVY EK P L +
Sbjct: 326 GRLQPGYPALASRHWQGLPSPVDAAFEDAQGQIWFFQGAQYWVYDGEKPVLGPAPL-SKL 384
Query: 546 PGVPSPLDAAVECHRGECQDEGVLFFQGTHTWFWDSTTKTTKERL------WPAV-GNCS 704
SP+ AA+ + + FF+G W + T+ + W V
Sbjct: 385 GLQGSPVHAALVWGP---EKNKIYFFRGGDYWRFHPRTQRVDNPVPRRSTDWRGVPSEID 441
Query: 705 SAMRWISRY-YCFRGNQFLRFDPVTGHVDPKYPRDVRDYFMSC 830
+A + Y Y RG+ + +FDPV V +PR V F C
Sbjct: 442 AAFQDAEGYAYFLRGHLYWKFDPVKVKVLEGFPRPVGPDFFDC 484
>ref|NP_062344.1| stromelysin-2 precursor [Mus musculus].
Length = 476
Score = 61.6 bits (148), Expect = 2e-09
Identities = 53/185 (28%), Positives = 78/185 (42%), Gaps = 16/185 (8%)
Frame = +3
Query: 264 PDPDVTERCSDGWGFDA-STLDEHGAMLFFKGPSVWAGQNWTRG----LISERWKDAPSS 428
P P+ ++C FD+ STL G +LFFK W +W LIS W PS
Sbjct: 281 PRPETPDKCDPALSFDSVSTL--RGEVLFFKDRYFWRRSHWNPEPEFHLISAFWPTLPSD 338
Query: 429 VDAAFR-RGHDSVFLIQGDKVW-VYPPEKEKENPRSLQE-EFPGVPSPLDAAVECHRGEC 599
+DAA+ DSV + +G + W V E + P+ + FP +DAAV E
Sbjct: 339 LDAAYEAHNTDSVLIFKGSQFWAVRGNEVQAGYPKGIHTLGFPPTVKKIDAAV----FEK 394
Query: 600 QDEGVLFFQGTHTWFWDSTTKTTKERL-------WPAV-GNCSSAMRWISRYYCFRGNQF 755
+ + FF G W +D T + +P + + + +Y FRG+
Sbjct: 395 EKKKTYFFVGDKYWRFDETRHVMDKGFPRQITDDFPGIEPQVDAVLHEFGFFYFFRGSSQ 454
Query: 756 LRFDP 770
FDP
Sbjct: 455 FEFDP 459
>ref|NP_001157669.1| matrix metalloproteinase-19 isoform 2 [Mus musculus].
Length = 455
Score = 51.2 bits (121), Expect = 2e-06
Identities = 60/208 (28%), Positives = 84/208 (40%), Gaps = 17/208 (8%)
Frame = +3
Query: 258 SKPDPDVTERCSDGWGFDASTLDEHGAMLFFKGPSVWAGQNWTRG---LISERWKDAPSS 428
+KP P + CS DA L G FKG VW + G IS W+ P +
Sbjct: 208 AKPGP-MPNPCSGE--VDAMVLGPRGKTYAFKGDYVWTVTDSGPGPLFQISALWEGLPGN 264
Query: 429 VDAAF-----RRGHDSVFLIQGDKVWVYPPEKEKENPRSLQEEFPGVPSPLDAAVECHRG 593
+DAA RR H +G+KVW Y K +F V LDAA+
Sbjct: 265 LDAAVYSPRTRRTH----FFKGNKVWRYVDFKMSP---GFPMKFNRVEPNLDAALYWP-- 315
Query: 594 ECQDEGVLFFQGTHTWFWDSTTKT--------TKERLWPAVGNCSSAMRW-ISRYYCFRG 746
++ V F+G+ W WD +T KE S+AM W + Y F+G
Sbjct: 316 --VNQKVFLFKGSGYWQWDELARTDLSRYPKPIKELFTGVPDRPSAAMSWQDGQVYFFKG 373
Query: 747 NQFLRFDPVTGHVDPKYPRDVRDYFMSC 830
++ R + V YPR+ ++M C
Sbjct: 374 KEYWRLNQQL-RVAKGYPRNT-THWMHC 399
>ref|NP_067387.1| matrix metalloproteinase-19 isoform 1 [Mus musculus].
Length = 527
Score = 51.2 bits (121), Expect = 2e-06
Identities = 60/208 (28%), Positives = 84/208 (40%), Gaps = 17/208 (8%)
Frame = +3
Query: 258 SKPDPDVTERCSDGWGFDASTLDEHGAMLFFKGPSVWAGQNWTRG---LISERWKDAPSS 428
+KP P + CS DA L G FKG VW + G IS W+ P +
Sbjct: 280 AKPGP-MPNPCSGE--VDAMVLGPRGKTYAFKGDYVWTVTDSGPGPLFQISALWEGLPGN 336
Query: 429 VDAAF-----RRGHDSVFLIQGDKVWVYPPEKEKENPRSLQEEFPGVPSPLDAAVECHRG 593
+DAA RR H +G+KVW Y K +F V LDAA+
Sbjct: 337 LDAAVYSPRTRRTH----FFKGNKVWRYVDFKMSP---GFPMKFNRVEPNLDAALYWP-- 387
Query: 594 ECQDEGVLFFQGTHTWFWDSTTKT--------TKERLWPAVGNCSSAMRW-ISRYYCFRG 746
++ V F+G+ W WD +T KE S+AM W + Y F+G
Sbjct: 388 --VNQKVFLFKGSGYWQWDELARTDLSRYPKPIKELFTGVPDRPSAAMSWQDGQVYFFKG 445
Query: 747 NQFLRFDPVTGHVDPKYPRDVRDYFMSC 830
++ R + V YPR+ ++M C
Sbjct: 446 KEYWRLNQQL-RVAKGYPRNT-THWMHC 471
>ref|NP_034939.1| stromelysin-1 preproprotein [Mus musculus].
Length = 479
Score = 51.2 bits (121), Expect = 2e-06
Identities = 53/200 (26%), Positives = 79/200 (39%), Gaps = 16/200 (8%)
Frame = +3
Query: 219 TAGPKHGAEGRNESKPDPDVTERCSDGWGFDA-STLDEHGAMLFFKGPSVWAGQNWTRG- 392
TA P + +P+ + CS FDA STL G +LFFK W T
Sbjct: 269 TASPDVLVVPTKSNSLEPETSPMCSSTLFFDAVSTL--RGEVLFFKDRHFWRKSLRTPEP 326
Query: 393 ---LISERWKDAPSSVDAAFR-RGHDSVFLIQGDKVWVYPPEKEKEN-PRSLQE-EFPGV 554
LIS W PS++DAA+ D+VF+ +G++ W +E P+S+ P
Sbjct: 327 EFYLISSFWPSLPSNMDAAYEVTNRDTVFIFKGNQFWAIRGHEELAGYPKSIHTLGLPAT 386
Query: 555 PSPLDAAVECHRGECQDEGVLFFQGTHTWFWDSTTKTTKERL-------WPAV-GNCSSA 710
+DAA+ + FF W +D ++ + +P V +
Sbjct: 387 VKKIDAAI----SNKEKRKTYFFVEDKYWRFDEKKQSMEPGFPRKIAEDFPGVDSRVDAV 442
Query: 711 MRWISRYYCFRGNQFLRFDP 770
Y F G+ L FDP
Sbjct: 443 FEAFGFLYFFSGSSQLEFDP 462
>ref|NP_034938.3| matrix metalloproteinase-24 [Mus musculus].
Length = 618
Score = 50.8 bits (120), Expect = 3e-06
Identities = 39/163 (23%), Positives = 62/163 (38%), Gaps = 18/163 (11%)
Frame = +3
Query: 396 ISERWKDAPSSVDAAFRRGHDSVFLIQGDKVWVYPPEKEKENPRSLQEEFPGVPSPLDAA 575
I + WK P+ +DAA+ R +GDK WV+ + PG P L
Sbjct: 391 IEQFWKGLPARIDAAYERADGRFVFFKGDKYWVFKEVTVE----------PGYPHSLGEL 440
Query: 576 VECHRGECQDEGV--------LFFQGTHTWFWDSTTKTTKE------RLWPAVGNCSSAM 713
C E D + FF+G W + + T +W +
Sbjct: 441 GSCLPREGIDTALRWEPVGKTYFFKGERYWRYSEERRATDPGYPKPITVWKGIPQAPQG- 499
Query: 714 RWISR----YYCFRGNQFLRFDPVTGHVDPKYPRDVRDYFMSC 830
+IS+ Y ++G + +FD V+P YPR++ +M C
Sbjct: 500 AFISKEGYYTYFYKGRDYWKFDNQKLSVEPGYPRNILRDWMGC 542
>ref|NP_032636.1| 72 kDa type IV collagenase precursor [Mus musculus].
Length = 662
Score = 49.7 bits (117), Expect = 6e-06
Identities = 40/180 (22%), Positives = 71/180 (39%), Gaps = 10/180 (5%)
Frame = +3
Query: 462 VFLIQGDKVW-VYPPEKEKENPRSLQEEFPGVPSPLDAAVECHRGECQDEGVLFFQGTHT 638
+F + +W P + P + +P +P +DA E Q+E +FF G
Sbjct: 487 IFFFKDRFIWRTVTPRDKPTGPLLVATFWPELPEKIDAVYEAP----QEEKAVFFAGNEY 542
Query: 639 WFWDSTT-------KTTKERLWPAVGNCSSAMRWIS--RYYCFRGNQFLRFDPVTGHVDP 791
W + ++T T L P V +A W + Y F G++F R++ V +DP
Sbjct: 543 WVYSASTLERGYPKPLTSLGLPPDVQQVDAAFNWSKNKKTYIFAGDKFWRYNEVKKKMDP 602
Query: 792 KYPRDVRDYFMSCPGRGHAHRNATHHGDDRCSPDLVLTALLSDNHGATYAFRGTHYWRLD 971
+P+ + D + PD + + G +Y F+G +Y +L+
Sbjct: 603 GFPKLIADSW-------------------NAIPDNLDAVVDLQGGGHSYFFKGAYYLKLE 643
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 56,593,292
Number of extensions: 1705317
Number of successful extensions: 7482
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 7411
Number of HSP's successfully gapped: 8
Length of query: 497
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 392
Effective length of database: 12,463,779
Effective search space: 4885801368
Effective search space used: 4885801368
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007073
(1491 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_999118.1| hemopexin precursor [Sus scrofa]. 953 0.0
Alignment gi|XP_001929480.1| PREDICTED: stromelysin-3 [Sus scrofa]. 60 3e-09
Alignment gi|XP_001925199.2| PREDICTED: LOW QUALITY PROTEIN: matrix metal... 57 3e-08
Alignment gi|XP_003354681.1| PREDICTED: matrix metalloproteinase-25-like ... 57 3e-08
Alignment gi|NP_001159780.1| stromelysin-1 [Sus scrofa]. 51 1e-06
>ref|NP_999118.1| hemopexin precursor [Sus scrofa].
Length = 459
Score = 953 bits (2463), Expect = 0.0
Identities = 439/452 (97%), Positives = 444/452 (98%)
Frame = +3
Query: 135 MARALGTAGAPWLLGLCCSLAIAHPLSLTAGPKHGAEGRNESKPDPDVTERCSDGWGFDA 314
MARALGT APWLLGLCCSLAIAHPLSLTAGPKHGAEGRNESKPDPDVTERCSDGWGFDA
Sbjct: 1 MARALGTVEAPWLLGLCCSLAIAHPLSLTAGPKHGAEGRNESKPDPDVTERCSDGWGFDA 60
Query: 315 STLDEHGAMLFFKGPSVWAGQNWTRGLISERWKDAPSSVDAAFRRGHDSVFLIQGDKVWV 494
STLDEHGAMLFFKGPSVWAGQNWTRGLISERWK+APSSVDAAFRRGHD VFLIQGDKVWV
Sbjct: 61 STLDEHGAMLFFKGPSVWAGQNWTRGLISERWKNAPSSVDAAFRRGHDRVFLIQGDKVWV 120
Query: 495 YPPEKEKENPRSLQEEFPGVPSPLDAAVECHRGECQDEGVLFFQGTHTWFWDSTTKTTKE 674
YPPEKEKENPRSLQEEFPGVPSPLDAAVECHRGECQDEGVLFFQGTHTWFWDSTTKTTKE
Sbjct: 121 YPPEKEKENPRSLQEEFPGVPSPLDAAVECHRGECQDEGVLFFQGTHTWFWDSTTKTTKE 180
Query: 675 RLWPAVGNCSSAMRWISRYYCFRGNQFLRFDPVTGHVDPKYPRDVRDYFMSCPGRGHAHR 854
RLWPAVGNCSSAMRWISRYYCFRGNQFLRFDPVTGHVDPKYPRDVRDYFMSCPGRGHAHR
Sbjct: 181 RLWPAVGNCSSAMRWISRYYCFRGNQFLRFDPVTGHVDPKYPRDVRDYFMSCPGRGHAHR 240
Query: 855 NATHHGDDRCSPDLVLTALLSDNHGATYAFRGTHYWRLDTSRDGWHSWPIDHQWSHGPSA 1034
NATH GDDRCSPDLVLTALLSDNHGATYAFRGTHYWRLDTSRDGWHSWPIDHQWSHGPSA
Sbjct: 241 NATHRGDDRCSPDLVLTALLSDNHGATYAFRGTHYWRLDTSRDGWHSWPIDHQWSHGPSA 300
Query: 1035 VDAAFSWDDKLYLIQGTQVYIFLTKAGYTLVDNYPKQLEKELGSPHGISLDAVDATFVCP 1214
VDAAFSWDDKLYLIQGTQVYIFLTKAGYTLVDNYPKQLEKELGSPHGISLDAVDATFVCP
Sbjct: 301 VDAAFSWDDKLYLIQGTQVYIFLTKAGYTLVDNYPKQLEKELGSPHGISLDAVDATFVCP 360
Query: 1215 GTSRLHVMAGRKLWWLDLSLGAQGPWTELPWPHEKVDAALCTEKSLGPNSCSASGLGLYI 1394
GTSRLHVMAGRKLWWLDLSLGAQGPWTELPWPHEKVDAALCTEKSLGPNSCSASGLGLYI
Sbjct: 361 GTSRLHVMAGRKLWWLDLSLGAQGPWTELPWPHEKVDAALCTEKSLGPNSCSASGLGLYI 420
Query: 1395 VHGPHVYCYKNLEKLVSVKAPPPPQNRNSLVG 1490
VHGPHVYCYK++EKLVS KA P PQ+ NSL+G
Sbjct: 421 VHGPHVYCYKDVEKLVSAKALPQPQSVNSLLG 452
>ref|XP_001929480.1| PREDICTED: stromelysin-3 [Sus scrofa].
Length = 491
Score = 60.1 bits (144), Expect = 3e-09
Identities = 55/180 (30%), Positives = 72/180 (40%), Gaps = 14/180 (7%)
Frame = +3
Query: 333 GAMLFFKGPSVWAG-----QNWTRGLISERWKDAPSSVDAAFRRGHDSVFLIQGDKVWVY 497
G + FFK VW Q L S W+ PS VDAAF ++ QG + WVY
Sbjct: 309 GELFFFKAGFVWRLRRGHLQPGYPALASRHWQGLPSPVDAAFEDAQGHIWFFQGAQYWVY 368
Query: 498 PPEKEKENPRSLQE-EFPGVPSPLDAAVECHRGECQDEGVLFFQGTHTWFWDSTTKTTKE 674
EK P L E PG SP+ AA+ + V FF+G W + +T
Sbjct: 369 DGEKPALGPAPLSELGLPG--SPVHAALVWGP---EKNKVYFFRGGDYWRFHPSTHRVDS 423
Query: 675 RL------WPAV-GNCSSAMRWISRY-YCFRGNQFLRFDPVTGHVDPKYPRDVRDYFMSC 830
+ W V +A + Y Y RG + +FDPV +PR V F C
Sbjct: 424 PVPRRATDWRGVPSEIDAAFQDADGYAYFLRGRLYWKFDPVKVKALEGFPRLVGLDFFGC 483
>ref|XP_001925199.2| PREDICTED: LOW QUALITY PROTEIN: matrix metalloproteinase-17 [Sus
scrofa].
Length = 592
Score = 57.0 bits (136), Expect = 3e-08
Identities = 59/215 (27%), Positives = 84/215 (39%), Gaps = 19/215 (8%)
Frame = +3
Query: 243 EGRNESKPDPDVTERCSDGWGFDASTLDEHGAMLFFKGPSVWAGQNWTRGLISER----- 407
+ R+ S P DV RCS FDA G LFFKG W N R L+S +
Sbjct: 317 DNRSSSPPRKDVPHRCSTH--FDA-VAQIXGESLFFKGKYFWR-LNRDRHLVSLQPVQMH 372
Query: 408 --WKDAP---SSVDAAFRRGHD-SVFLIQGDKVWVYPPEKEKENPRSLQEEFPGVPSPLD 569
W+ SVDA + R D + +GD+ WV+ +E +F P +D
Sbjct: 373 RFWRGLLLHLDSVDAVYERTSDHKIIFFKGDRYWVFKDNNVEEGYPRPVSDFGLPPGGVD 432
Query: 570 AAVECHRGECQDEGVLFFQGTHTWFWDSTTK------TTKERLWPAV-GNCSSAMRWI-S 725
AA ++ FF+ W +D T+ + W V AMRW
Sbjct: 433 AAFSW----AHNDKTYFFKDQLYWRYDEHTRRMDPGHPAQSPPWRGVPSTLDDAMRWSDG 488
Query: 726 RYYCFRGNQFLRFDPVTGHVDPKYPRDVRDYFMSC 830
Y FRG ++ + V P YP+ ++ C
Sbjct: 489 AAYFFRGKEYWKVLDSELEVAPGYPQSTARDWLVC 523
>ref|XP_003354681.1| PREDICTED: matrix metalloproteinase-25-like [Sus scrofa].
Length = 780
Score = 57.0 bits (136), Expect = 3e-08
Identities = 63/245 (25%), Positives = 84/245 (34%), Gaps = 11/245 (4%)
Frame = +3
Query: 264 PDPDVTERCSDGWGFDASTLDEHGAMLFFKGPSVWAGQNWTRGLISER-------WKDAP 422
P V +RC FDA + G FFKGP W Q + L+S R W+ P
Sbjct: 313 PSQPVPDRCEGN--FDAIA-NIRGETFFFKGPWFWRLQP-SGQLVSPRPARLHRFWEGLP 368
Query: 423 SSVD---AAFRRGHDS-VFLIQGDKVWVYPPEKEKENPRSLQEEFPGVPSPLDAAVECHR 590
+ V AA+ R D + L G + WV+ + + PR L E +DA
Sbjct: 369 AQVQVIQAAYARHPDGRILLFSGPQFWVFQDRRLEGAPRPLTELGLPPQEQVDAVFS--- 425
Query: 591 GECQDEGVLFFQGTHTWFWDSTTKTTKERLWPAVGNCSSAMRWISRYYCFRGNQFLRFDP 770
WP G + Y RG ++ R+D
Sbjct: 426 ------------------------------WPLNG----------KTYLVRGQRYWRYDE 445
Query: 771 VTGHVDPKYPRDVRDYFMSCPGRGHAHRNATHHGDDRCSPDLVLTALLSDNHGATYAFRG 950
DP YPRD+ + A H DD + N G TY F+G
Sbjct: 446 AAASPDPGYPRDLSLW-----------EGAPHAPDD----------VTVSNTGDTYFFKG 484
Query: 951 THYWR 965
HYWR
Sbjct: 485 AHYWR 489
>ref|NP_001159780.1| stromelysin-1 [Sus scrofa].
Length = 477
Score = 51.2 bits (121), Expect = 1e-06
Identities = 53/200 (26%), Positives = 80/200 (40%), Gaps = 17/200 (8%)
Frame = +3
Query: 222 AGPKHGAEGRNESKPDPDVTERCSDGWGFDA-STLDEHGAMLFFKGPSVWAGQNWTR--- 389
A P E + P C FDA STL G +LFFK W +++ R
Sbjct: 268 ASPPEPVEPTESTPQKPGTPATCDPALSFDAISTL--RGEILFFKDRHFWR-KSFRRLEP 324
Query: 390 --GLISERWKDAPSSVDAAFR-RGHDSVFLIQGDKVW-VYPPEKEKENPRSLQE-EFPGV 554
LIS W PSS+DAA D+VF+ +G + W + + + PRS+ FP
Sbjct: 325 EFHLISSFWPPLPSSIDAACEVISKDTVFIFKGTQFWAIRGNDVQPGYPRSIHTLGFPST 384
Query: 555 PSPLDAAVECHRGECQDEGVLFFQGTHTWFWDSTTKTTKERL-------WPAV-GNCSSA 710
+DAA+ + + + FF W +D ++ + +P V +
Sbjct: 385 VKKIDAAI----SDKETKKTYFFVEDKYWRFDEKRQSMEPGFPKQIVEDFPGVEPKVDAV 440
Query: 711 MRWISRYYCFRGNQFLRFDP 770
+Y F G+ FDP
Sbjct: 441 FEAFGFFYFFNGSSQFEFDP 460
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 42,881,136
Number of extensions: 1349266
Number of successful extensions: 6234
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 6187
Number of HSP's successfully gapped: 5
Length of query: 497
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 394
Effective length of database: 8,779,541
Effective search space: 3459139154
Effective search space used: 3459139154
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007073
(1491 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr09 412 e-112
>Sscrofa_Chr09
|| Length = 153670197
Score = 412 bits (208), Expect = e-112
Identities = 214/216 (99%)
Strand = Plus / Plus
Query: 626 aggcacccacacctggttctgggactccacgacaaaaaccacaaaggagcgcctctggcc 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3949767 aggcacccacacctggttctgggactccacgacaaaaaccacaaaggagcgcctctggcc 3949826
Query: 686 ggccgtgggcaactgctcctccgccatgcgatggatcagccgctactactgcttccgggg 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3949827 ggccgtgggcaactgctcctccgccatgcgatggatcagccgctactactgcttccgggg 3949886
Query: 746 taaccagttcctgcgctttgaccctgtcacgggacatgtggatcccaaataccctcggga 805
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 3949887 taaccagttcctgcgctttgaccccgtcacgggacatgtggatcccaaataccctcggga 3949946
Query: 806 tgtccgcgactacttcatgtcctgcccgggcagagg 841
||||||||||||||||||||||||||||| ||||||
Sbjct: 3949947 tgtccgcgactacttcatgtcctgcccggacagagg 3949982
Score = 381 bits (192), Expect = e-103
Identities = 237/252 (94%)
Strand = Plus / Plus
Query: 1240 caggacggaagctgtggtggctggacctgagtttaggcgctcaaggcccgtggaccgagc 1299
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 3954864 caggacggaagctgtggtggctggacctgagtttaggcgctcaaggcccgtggacagagc 3954923
Query: 1300 ttccctggccgcatgagaaggtcgatgcagccctgtgcacggaaaagtctctcggcccca 1359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3954924 ttccctggccgcatgagaaggtcgatgcagccctgtgcacggaaaagtctctcggcccca 3954983
Query: 1360 actcgtgttccgccagcggcctcggcctgtacatcgtccacggcccccatgtctactgct 1419
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 3954984 actcgtgttccgccagcggcctcggcctgtacatcgtccacggcccccacgtctactgct 3955043
Query: 1420 acaaaaacctggaaaaactggtctcggtcaaggcccctcccccgccccaaaaccgaaaca 1479
||||| || |||| ||||||||||||| |||||| | |||| |||||| | | |||||
Sbjct: 3955044 acaaagacgtggagaaactggtctcggccaaggcgctgccccagccccagagcgtaaaca 3955103
Query: 1480 gcctggtgggct 1491
||||| ||||||
Sbjct: 3955104 gcctgctgggct 3955115
Score = 341 bits (172), Expect = 7e-91
Identities = 195/205 (95%)
Strand = Plus / Plus
Query: 14 acattggcacagtcccgggaggtnnnnnnnagcaggcatgggcgggggcggtgctgctgc 73
||||||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct: 3946393 acattggcacagtcccgggaggtcccccccagcaggcatgggcgggggcggtgctgccgc 3946452
Query: 74 cacctctatatagggcgttcagccggggcccagcgctgacctgtggcccctccagctcat 133
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 3946453 cacctctatatagggcgttcagccggggcccagcgctgacctgtggcccccccagctcat 3946512
Query: 134 catggctcgggcgctgggaacagcgggggcaccgtggctgttggggctctgctgctctct 193
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 3946513 catggctcgggcgctgggaacagtgggggcaccgtggctgttggggctctgctgctctct 3946572
Query: 194 ggccatcgcccaccctctttctctg 218
|||||||||||||||||||||||||
Sbjct: 3946573 ggccatcgcccaccctctttctctg 3946597
Score = 333 bits (168), Expect = 2e-88
Identities = 168/168 (100%)
Strand = Plus / Plus
Query: 1076 ccagggcacccaggtctatatcttcctgacaaaggcgggctacaccctggtagacaatta 1135
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3954581 ccagggcacccaggtctatatcttcctgacaaaggcgggctacaccctggtagacaatta 3954640
Query: 1136 cccaaagcagctggagaaggagctcgggagccctcacggcatcagccttgacgctgtgga 1195
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3954641 cccaaagcagctggagaaggagctcgggagccctcacggcatcagccttgacgctgtgga 3954700
Query: 1196 tgcgacctttgtctgtcctgggacgtctcggctccacgtcatggcagg 1243
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3954701 tgcgacctttgtctgtcctgggacgtctcggctccacgtcatggcagg 3954748
Score = 299 bits (151), Expect = 2e-78
Identities = 154/155 (99%)
Strand = Plus / Plus
Query: 474 cagggggacaaggtctgggtctacccgccagagaaggagaaagaaaatccaaggtcgctc 533
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 3949038 cagggggacaaggtctgggtctaccctccagagaaggagaaagaaaatccaaggtcgctc 3949097
Query: 534 caagaggagtttcctggagtcccatccccactggatgctgcagtggaatgtcaccgtgga 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3949098 caagaggagtttcctggagtcccatccccactggatgctgcagtggaatgtcaccgtgga 3949157
Query: 594 gaatgccaagatgagggcgtcctcttcttccaagg 628
|||||||||||||||||||||||||||||||||||
Sbjct: 3949158 gaatgccaagatgagggcgtcctcttcttccaagg 3949192
Score = 264 bits (133), Expect = 1e-67
Identities = 133/133 (100%)
Strand = Plus / Plus
Query: 948 gggacccactactggcgtctggacaccagccgggacgggtggcacagctggcccattgac 1007
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3954377 gggacccactactggcgtctggacaccagccgggacgggtggcacagctggcccattgac 3954436
Query: 1008 catcagtggtcccacggtccttcggccgtggatgctgccttttcctgggatgacaagctc 1067
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3954437 catcagtggtcccacggtccttcggccgtggatgctgccttttcctgggatgacaagctc 3954496
Query: 1068 tatctgatccagg 1080
|||||||||||||
Sbjct: 3954497 tatctgatccagg 3954509
Score = 224 bits (113), Expect = 1e-55
Identities = 122/125 (97%)
Strand = Plus / Plus
Query: 353 agggccgtctgtgtgggcgggtcaaaactggacccgggggttaatctcagagaggtggaa 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3947405 agggccgtctgtgtgggcgggtcaaaactggacccgggggttaatctcagagaggtggaa 3947464
Query: 413 ggacgcccccagctccgtggacgccgccttccgccgtggtcacgacagcgtctttctcat 472
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 3947465 aaacgcccccagctccgtggacgccgccttccgccgtggtcacgacagagtctttctcat 3947524
Query: 473 ccagg 477
|||||
Sbjct: 3947525 ccagg 3947529
Score = 212 bits (107), Expect = 4e-52
Identities = 110/111 (99%)
Strand = Plus / Plus
Query: 839 aggccatgcacacaggaacgcaacccaccatggggatgaccgctgtagcccagacctggt 898
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 3950226 aggccatgcacacaggaacgcaacccaccgtggggatgaccgctgtagcccagacctggt 3950285
Query: 899 cttgactgcactgctgtctgacaaccacggtgccacctacgccttccgtgg 949
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3950286 cttgactgcactgctgtctgacaaccacggtgccacctacgccttccgtgg 3950336
Score = 139 bits (70), Expect = 5e-30
Identities = 73/74 (98%)
Strand = Plus / Plus
Query: 282 gaacgctgctcggatggctggggcttcgacgccagcaccctggatgagcacggggctatg 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3946897 gaacgctgctcggatggctggggcttcgacgccagcaccctggatgagcacggggctatg 3946956
Query: 342 ctgttttttaaagg 355
|||||||| |||||
Sbjct: 3946957 ctgtttttcaaagg 3946970
Score = 129 bits (65), Expect = 5e-27
Identities = 65/65 (100%)
Strand = Plus / Plus
Query: 218 gactgctggccctaagcacggagctgaaggcaggaatgagtccaagccggacccagacgt 277
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3946747 gactgctggccctaagcacggagctgaaggcaggaatgagtccaagccggacccagacgt 3946806
Query: 278 gaccg 282
|||||
Sbjct: 3946807 gaccg 3946811
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 36,900,446
Number of extensions: 221
Number of successful extensions: 221
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 220
Number of HSP's successfully gapped: 10
Length of query: 1491
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1470
Effective length of database: 2,808,413,156
Effective search space: 4128367339320
Effective search space used: 4128367339320
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)