Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007079
(1822 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029801.1| epoxide hydrolase 1 [Bos taurus]. 824 0.0
>ref|NP_001029801.1| epoxide hydrolase 1 [Bos taurus].
Length = 451
Score = 824 bits (2128), Expect = 0.0
Identities = 392/454 (86%), Positives = 415/454 (91%)
Frame = +1
Query: 166 MWLEILLASVLGFVIYWFVSKDKEETLLLGDGWWGPGSRPAAAEDESIRPFKVETSDEEI 345
MWLEILLASVLGFVIYWFVSKDKEETL L DGWWGPG RP A ED+SIRPFKVETSDEEI
Sbjct: 1 MWLEILLASVLGFVIYWFVSKDKEETLPLEDGWWGPGVRPTAGEDKSIRPFKVETSDEEI 60
Query: 346 NDLHQRIEKFRLTPPLEDSRFHYGFNSNYLKKIISYWRNTFDWRKQVEVLNKYPHFKTKI 525
NDLHQRI++ RLTPPLEDSRFHYGFNSNYLKKIISYWRN FDWRKQVE+LNKYPHFKTKI
Sbjct: 61 NDLHQRIDRVRLTPPLEDSRFHYGFNSNYLKKIISYWRNEFDWRKQVEILNKYPHFKTKI 120
Query: 526 EGLDIHFIHVKPPQLPSGRTAKPLLMVHGWPGCFYEFYKIIPLLTDPKNHGLSDEHVFEV 705
EGLDIHFIHVKPP LPSG+T KPLLMVHGWPG FYEFYKIIP LTDPKNHGLSDEHVFEV
Sbjct: 121 EGLDIHFIHVKPPNLPSGQTPKPLLMVHGWPGSFYEFYKIIPFLTDPKNHGLSDEHVFEV 180
Query: 706 ICPSIPGYGFSEASSKKGFNSVATARIFYKLMLRLGFQEFYLQGGDWGALICTNMAQLVP 885
ICPSIPGY FSEASSKKGFNSVATARIFYKLMLRLGFQ+FY+QGGDWGALICTNMAQLVP
Sbjct: 181 ICPSIPGYSFSEASSKKGFNSVATARIFYKLMLRLGFQKFYIQGGDWGALICTNMAQLVP 240
Query: 886 SHVKGLHLNVALVLRNVYTLTXXXXXXXXXXXXYTERDLELLYPFKKTFYTLMRESGYMH 1065
SH+KGLHLN+AL+LRN YTLT YTERD+EL+YPFKK F++L+RESGY+H
Sbjct: 241 SHIKGLHLNMALILRNFYTLTLPLGRCFGGLFGYTERDMELIYPFKKIFFSLLRESGYLH 300
Query: 1066 IQSTKPDTVGCALNDSPVGLAAYILEKFSTWTNEEFRDLEDGGLERKFSLDELLTVIMLY 1245
IQSTKPDTVGCALNDSPVGLAAYILEKFSTWTN EFRDLEDGGLERKFSLD+LLT IMLY
Sbjct: 301 IQSTKPDTVGCALNDSPVGLAAYILEKFSTWTNSEFRDLEDGGLERKFSLDDLLTGIMLY 360
Query: 1246 WTTGTITSSQRFYKENLGQGVMANKHEAIKVHVPTGFAAFPSEVLHCPEKWVKNKYPKLI 1425
WTTGTITSSQRFYKENLGQ NKHE +KV+VPTGFAAFP E++H PEKWVK KYP LI
Sbjct: 361 WTTGTITSSQRFYKENLGQ---VNKHEMLKVYVPTGFAAFPCELMHLPEKWVKTKYPNLI 417
Query: 1426 SYSYMARGGHFAAFEEPELLAQDIRKFMGLLEQQ 1527
SYSYM RGGHFAAFEEPELLAQDIRKF+GL E+Q
Sbjct: 418 SYSYMPRGGHFAAFEEPELLAQDIRKFVGLQERQ 451
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 70,857,243
Number of extensions: 2047694
Number of successful extensions: 8572
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 8535
Number of HSP's successfully gapped: 1
Length of query: 607
Length of database: 17,681,374
Length adjustment: 108
Effective length of query: 499
Effective length of database: 14,107,870
Effective search space: 7039827130
Effective search space used: 7039827130
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007079
(1822 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_537235.2| PREDICTED: similar to Epoxide hydrolase 1 (Micr... 803 0.0
Alignment gi|XP_863972.1| PREDICTED: similar to Epoxide hydrolase 1 (Micr... 775 0.0
Alignment gi|XP_863989.1| PREDICTED: similar to epoxide hydrolase 1 isofo... 712 0.0
>ref|XP_537235.2| PREDICTED: similar to Epoxide hydrolase 1 (Microsomal epoxide
hydrolase) (Epoxide hydratase) isoform 1 [Canis
familiaris].
Length = 454
Score = 803 bits (2074), Expect = 0.0
Identities = 382/453 (84%), Positives = 410/453 (90%), Gaps = 1/453 (0%)
Frame = +1
Query: 166 MWLEILLASVLGFVIYWFVSKDKEETLLLGDGWWGPGSRPAAAEDESIRPFKVETSDEEI 345
MWLEI+LA +LGFVIYWFVS+DKEETL LGDGWWGPG+RP A EDES+RPFKVETS+EEI
Sbjct: 1 MWLEIILALLLGFVIYWFVSRDKEETLPLGDGWWGPGARPTATEDESVRPFKVETSEEEI 60
Query: 346 NDLHQRIEKFRLTPPLEDSRFHYGFNSNYLKKIISYWRNTFDWRKQVEVLNKYPHFKTKI 525
DLHQRI++ RLTPPLED RFHYGFNS YLKKI+SYWRN FDWRKQVE+LN+YPHFKTKI
Sbjct: 61 EDLHQRIDRVRLTPPLEDGRFHYGFNSKYLKKILSYWRNEFDWRKQVEILNRYPHFKTKI 120
Query: 526 EGLDIHFIHVKPPQLPSGRTAKPLLMVHGWPGCFYEFYKIIPLLTDPKNHGLSDEHVFEV 705
EGLDIHFIHVKPPQLPS T KPLLMVHGWPG FYEFYKIIPLLTDPKNHGLSDEHVFEV
Sbjct: 121 EGLDIHFIHVKPPQLPSSSTPKPLLMVHGWPGSFYEFYKIIPLLTDPKNHGLSDEHVFEV 180
Query: 706 ICPSIPGYGFSEASSKKGFNSVATARIFYKLMLRLGFQEFYLQGGDWGALICTNMAQLVP 885
ICPSIPGY FSEASSKKG NSVATARIFYKLMLRLGFQEFY+QGGDWG+LICTNMAQ+VP
Sbjct: 181 ICPSIPGYSFSEASSKKGLNSVATARIFYKLMLRLGFQEFYIQGGDWGSLICTNMAQMVP 240
Query: 886 SHVKGLHLNVALVLRNVYTLTXXXXXXXXXXXXYTERDLELLYPFK-KTFYTLMRESGYM 1062
SHVKGLHLN+AL+L Y LT YT+RDLELLYPFK K FY+LMRESGYM
Sbjct: 241 SHVKGLHLNMALIL-GPYILTLLLGRRILSLLGYTQRDLELLYPFKEKVFYSLMRESGYM 299
Query: 1063 HIQSTKPDTVGCALNDSPVGLAAYILEKFSTWTNEEFRDLEDGGLERKFSLDELLTVIML 1242
HIQ TKPDTVGCALNDSPVGLAAYILEKFSTWTN EFRDLE+GGL+RKFSLD+LLT +ML
Sbjct: 300 HIQCTKPDTVGCALNDSPVGLAAYILEKFSTWTNPEFRDLENGGLDRKFSLDDLLTNVML 359
Query: 1243 YWTTGTITSSQRFYKENLGQGVMANKHEAIKVHVPTGFAAFPSEVLHCPEKWVKNKYPKL 1422
YWTTGTI SSQRFYKENLGQG MAN H+ +KV+VPTGFAAFP E++H PEKWVK KYPKL
Sbjct: 360 YWTTGTIASSQRFYKENLGQGFMANAHDRMKVYVPTGFAAFPCELMHVPEKWVKAKYPKL 419
Query: 1423 ISYSYMARGGHFAAFEEPELLAQDIRKFMGLLE 1521
ISYSYMARGGHFAAFEEPELLAQDIRKF+GLLE
Sbjct: 420 ISYSYMARGGHFAAFEEPELLAQDIRKFVGLLE 452
>ref|XP_863972.1| PREDICTED: similar to Epoxide hydrolase 1 (Microsomal epoxide
hydrolase) (Epoxide hydratase) isoform 2 [Canis
familiaris].
Length = 441
Score = 775 bits (2001), Expect = 0.0
Identities = 371/453 (81%), Positives = 397/453 (87%), Gaps = 1/453 (0%)
Frame = +1
Query: 166 MWLEILLASVLGFVIYWFVSKDKEETLLLGDGWWGPGSRPAAAEDESIRPFKVETSDEEI 345
MWLEI+LA +LGFVIYWFVS+DKEETL LGDGWWGPG+RP A EDES+RPFKVETS+EEI
Sbjct: 1 MWLEIILALLLGFVIYWFVSRDKEETLPLGDGWWGPGARPTATEDESVRPFKVETSEEEI 60
Query: 346 NDLHQRIEKFRLTPPLEDSRFHYGFNSNYLKKIISYWRNTFDWRKQVEVLNKYPHFKTKI 525
DLHQRI++ RLTPPLED RFHYGFNS YLKKI+SYWRN FDWRKQVE+LN+YPHFKTKI
Sbjct: 61 EDLHQRIDRVRLTPPLEDGRFHYGFNSKYLKKILSYWRNEFDWRKQVEILNRYPHFKTKI 120
Query: 526 EGLDIHFIHVKPPQLPSGRTAKPLLMVHGWPGCFYEFYKIIPLLTDPKNHGLSDEHVFEV 705
EGLDIHFIHVKPPQLPS T KPLLMVHGWPG FYEFYKIIPLLTDPKNHGLSDEHVFEV
Sbjct: 121 EGLDIHFIHVKPPQLPSSSTPKPLLMVHGWPGSFYEFYKIIPLLTDPKNHGLSDEHVFEV 180
Query: 706 ICPSIPGYGFSEASSKKGFNSVATARIFYKLMLRLGFQEFYLQGGDWGALICTNMAQLVP 885
ICPSIPGY FSEASSKKG NSVATARIFYKLMLRLGFQEFY+QGGDWG+LICTNMAQ+VP
Sbjct: 181 ICPSIPGYSFSEASSKKGLNSVATARIFYKLMLRLGFQEFYIQGGDWGSLICTNMAQMVP 240
Query: 886 SHVKGLHLNVALVLRNVYTLTXXXXXXXXXXXXYTERDLELLYPFK-KTFYTLMRESGYM 1062
R Y LT YT+RDLELLYPFK K FY+LMRESGYM
Sbjct: 241 --------------RRPYILTLLLGRRILSLLGYTQRDLELLYPFKEKVFYSLMRESGYM 286
Query: 1063 HIQSTKPDTVGCALNDSPVGLAAYILEKFSTWTNEEFRDLEDGGLERKFSLDELLTVIML 1242
HIQ TKPDTVGCALNDSPVGLAAYILEKFSTWTN EFRDLE+GGL+RKFSLD+LLT +ML
Sbjct: 287 HIQCTKPDTVGCALNDSPVGLAAYILEKFSTWTNPEFRDLENGGLDRKFSLDDLLTNVML 346
Query: 1243 YWTTGTITSSQRFYKENLGQGVMANKHEAIKVHVPTGFAAFPSEVLHCPEKWVKNKYPKL 1422
YWTTGTI SSQRFYKENLGQG MAN H+ +KV+VPTGFAAFP E++H PEKWVK KYPKL
Sbjct: 347 YWTTGTIASSQRFYKENLGQGFMANAHDRMKVYVPTGFAAFPCELMHVPEKWVKAKYPKL 406
Query: 1423 ISYSYMARGGHFAAFEEPELLAQDIRKFMGLLE 1521
ISYSYMARGGHFAAFEEPELLAQDIRKF+GLLE
Sbjct: 407 ISYSYMARGGHFAAFEEPELLAQDIRKFVGLLE 439
>ref|XP_863989.1| PREDICTED: similar to epoxide hydrolase 1 isoform 3 [Canis
familiaris].
Length = 412
Score = 712 bits (1839), Expect = 0.0
Identities = 348/453 (76%), Positives = 373/453 (82%), Gaps = 1/453 (0%)
Frame = +1
Query: 166 MWLEILLASVLGFVIYWFVSKDKEETLLLGDGWWGPGSRPAAAEDESIRPFKVETSDEEI 345
MWLEI+LA +LGFVIYWFVS+DKEETL LGDGWWGPG+RP A EDES+RPFKVETS+EEI
Sbjct: 1 MWLEIILALLLGFVIYWFVSRDKEETLPLGDGWWGPGARPTATEDESVRPFKVETSEEEI 60
Query: 346 NDLHQRIEKFRLTPPLEDSRFHYGFNSNYLKKIISYWRNTFDWRKQVEVLNKYPHFKTKI 525
DLHQRI++ RLTPPLED RFHYGFNS YLKKI+SYWRN FDWRKQVE+LN+YPHFKTKI
Sbjct: 61 EDLHQRIDRVRLTPPLEDGRFHYGFNSKYLKKILSYWRNEFDWRKQVEILNRYPHFKTKI 120
Query: 526 EGLDIHFIHVKPPQLPSGRTAKPLLMVHGWPGCFYEFYKIIPLLTDPKNHGLSDEHVFEV 705
EGLDIHFIHVKPPQLPS T KPLLMVHGWPG FYEFYKIIPLLTDPKNHGLSDEHVFEV
Sbjct: 121 EGLDIHFIHVKPPQLPSSSTPKPLLMVHGWPGSFYEFYKIIPLLTDPKNHGLSDEHVFEV 180
Query: 706 ICPSIPGYGFSEASSKKGFNSVATARIFYKLMLRLGFQEFYLQGGDWGALICTNMAQLVP 885
ICPSIPGY FSEASSKKG NSVATARIFYKLMLRLGFQEFY+QGGDWG+LICTNMAQ+VP
Sbjct: 181 ICPSIPGYSFSEASSKKGLNSVATARIFYKLMLRLGFQEFYIQGGDWGSLICTNMAQMVP 240
Query: 886 SHVKGLHLNVALVLRNVYTLTXXXXXXXXXXXXYTERDLELLYPFK-KTFYTLMRESGYM 1062
SHVKGLHLN+AL+L Y LT YT+RDLELLYPFK K FY+LMRESGYM
Sbjct: 241 SHVKGLHLNMALIL-GPYILTLLLGRRILSLLGYTQRDLELLYPFKEKVFYSLMRESGYM 299
Query: 1063 HIQSTKPDTVGCALNDSPVGLAAYILEKFSTWTNEEFRDLEDGGLERKFSLDELLTVIML 1242
HIQ TKPDTVGCALNDSPVGLAAYILEKFSTWTN EFRDLE+GGL+R
Sbjct: 300 HIQCTKPDTVGCALNDSPVGLAAYILEKFSTWTNPEFRDLENGGLDR------------- 346
Query: 1243 YWTTGTITSSQRFYKENLGQGVMANKHEAIKVHVPTGFAAFPSEVLHCPEKWVKNKYPKL 1422
+KV+VPTGFAAFP E++H PEKWVK KYPKL
Sbjct: 347 -----------------------------MKVYVPTGFAAFPCELMHVPEKWVKAKYPKL 377
Query: 1423 ISYSYMARGGHFAAFEEPELLAQDIRKFMGLLE 1521
ISYSYMARGGHFAAFEEPELLAQDIRKF+GLLE
Sbjct: 378 ISYSYMARGGHFAAFEEPELLAQDIRKFVGLLE 410
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 74,067,347
Number of extensions: 2122166
Number of successful extensions: 9074
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 9031
Number of HSP's successfully gapped: 4
Length of query: 607
Length of database: 18,874,504
Length adjustment: 109
Effective length of query: 498
Effective length of database: 15,240,880
Effective search space: 7589958240
Effective search space used: 7589958240
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007079
(1822 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_000111.1| epoxide hydrolase 1 [Homo sapiens]. 799 0.0
Alignment gi|NP_001129490.1| epoxide hydrolase 1 [Homo sapiens]. 799 0.0
>ref|NP_000111.1| epoxide hydrolase 1 [Homo sapiens].
Length = 455
Score = 799 bits (2064), Expect = 0.0
Identities = 383/455 (84%), Positives = 409/455 (89%), Gaps = 1/455 (0%)
Frame = +1
Query: 166 MWLEILLASVLGFVIYWFVSKDKEETLLLGDGWWGPGSRPAAAEDESIRPFKVETSDEEI 345
MWLEILL SVLGF IYWF+S+DKEETL L DGWWGPG+R AA ED+SIRPFKVETSDEEI
Sbjct: 1 MWLEILLTSVLGFAIYWFISRDKEETLPLEDGWWGPGTRSAAREDDSIRPFKVETSDEEI 60
Query: 346 NDLHQRIEKFRLTPPLEDSRFHYGFNSNYLKKIISYWRNTFDWRKQVEVLNKYPHFKTKI 525
+DLHQRI+KFR TPPLEDS FHYGFNSNYLKK+ISYWRN FDW+KQVE+LN+YPHFKTKI
Sbjct: 61 HDLHQRIDKFRFTPPLEDSCFHYGFNSNYLKKVISYWRNEFDWKKQVEILNRYPHFKTKI 120
Query: 526 EGLDIHFIHVKPPQLPSGRTAKPLLMVHGWPGCFYEFYKIIPLLTDPKNHGLSDEHVFEV 705
EGLDIHFIHVKPPQLP+G T KPLLMVHGWPG FYEFYKIIPLLTDPKNHGLSDEHVFEV
Sbjct: 121 EGLDIHFIHVKPPQLPAGHTPKPLLMVHGWPGSFYEFYKIIPLLTDPKNHGLSDEHVFEV 180
Query: 706 ICPSIPGYGFSEASSKKGFNSVATARIFYKLMLRLGFQEFYLQGGDWGALICTNMAQLVP 885
ICPSIPGYGFSEASSKKGFNSVATARIFYKLMLRLGFQEFY+QGGDWG+LICTNMAQLVP
Sbjct: 181 ICPSIPGYGFSEASSKKGFNSVATARIFYKLMLRLGFQEFYIQGGDWGSLICTNMAQLVP 240
Query: 886 SHVKGLHLNVALVLRNVYTLTXXXXXXXXXXXXYTERDLELLYPFK-KTFYTLMRESGYM 1062
SHVKGLHLN+ALVL N TLT TERD+ELLYP K K FY+LMRESGYM
Sbjct: 241 SHVKGLHLNMALVLSNFSTLTLLLGQRFGRFLGLTERDVELLYPVKEKVFYSLMRESGYM 300
Query: 1063 HIQSTKPDTVGCALNDSPVGLAAYILEKFSTWTNEEFRDLEDGGLERKFSLDELLTVIML 1242
HIQ TKPDTVG ALNDSPVGLAAYILEKFSTWTN EFR LEDGGLERKFSLD+LLT +ML
Sbjct: 301 HIQCTKPDTVGSALNDSPVGLAAYILEKFSTWTNTEFRYLEDGGLERKFSLDDLLTNVML 360
Query: 1243 YWTTGTITSSQRFYKENLGQGVMANKHEAIKVHVPTGFAAFPSEVLHCPEKWVKNKYPKL 1422
YWTTGTI SSQRFYKENLGQG M KHE +KV+VPTGF+AFP E+LH PEKWV+ KYPKL
Sbjct: 361 YWTTGTIISSQRFYKENLGQGWMTQKHERMKVYVPTGFSAFPFELLHTPEKWVRFKYPKL 420
Query: 1423 ISYSYMARGGHFAAFEEPELLAQDIRKFMGLLEQQ 1527
ISYSYM RGGHFAAFEEPELLAQDIRKF+ +LE+Q
Sbjct: 421 ISYSYMVRGGHFAAFEEPELLAQDIRKFLSVLERQ 455
>ref|NP_001129490.1| epoxide hydrolase 1 [Homo sapiens].
Length = 455
Score = 799 bits (2064), Expect = 0.0
Identities = 383/455 (84%), Positives = 409/455 (89%), Gaps = 1/455 (0%)
Frame = +1
Query: 166 MWLEILLASVLGFVIYWFVSKDKEETLLLGDGWWGPGSRPAAAEDESIRPFKVETSDEEI 345
MWLEILL SVLGF IYWF+S+DKEETL L DGWWGPG+R AA ED+SIRPFKVETSDEEI
Sbjct: 1 MWLEILLTSVLGFAIYWFISRDKEETLPLEDGWWGPGTRSAAREDDSIRPFKVETSDEEI 60
Query: 346 NDLHQRIEKFRLTPPLEDSRFHYGFNSNYLKKIISYWRNTFDWRKQVEVLNKYPHFKTKI 525
+DLHQRI+KFR TPPLEDS FHYGFNSNYLKK+ISYWRN FDW+KQVE+LN+YPHFKTKI
Sbjct: 61 HDLHQRIDKFRFTPPLEDSCFHYGFNSNYLKKVISYWRNEFDWKKQVEILNRYPHFKTKI 120
Query: 526 EGLDIHFIHVKPPQLPSGRTAKPLLMVHGWPGCFYEFYKIIPLLTDPKNHGLSDEHVFEV 705
EGLDIHFIHVKPPQLP+G T KPLLMVHGWPG FYEFYKIIPLLTDPKNHGLSDEHVFEV
Sbjct: 121 EGLDIHFIHVKPPQLPAGHTPKPLLMVHGWPGSFYEFYKIIPLLTDPKNHGLSDEHVFEV 180
Query: 706 ICPSIPGYGFSEASSKKGFNSVATARIFYKLMLRLGFQEFYLQGGDWGALICTNMAQLVP 885
ICPSIPGYGFSEASSKKGFNSVATARIFYKLMLRLGFQEFY+QGGDWG+LICTNMAQLVP
Sbjct: 181 ICPSIPGYGFSEASSKKGFNSVATARIFYKLMLRLGFQEFYIQGGDWGSLICTNMAQLVP 240
Query: 886 SHVKGLHLNVALVLRNVYTLTXXXXXXXXXXXXYTERDLELLYPFK-KTFYTLMRESGYM 1062
SHVKGLHLN+ALVL N TLT TERD+ELLYP K K FY+LMRESGYM
Sbjct: 241 SHVKGLHLNMALVLSNFSTLTLLLGQRFGRFLGLTERDVELLYPVKEKVFYSLMRESGYM 300
Query: 1063 HIQSTKPDTVGCALNDSPVGLAAYILEKFSTWTNEEFRDLEDGGLERKFSLDELLTVIML 1242
HIQ TKPDTVG ALNDSPVGLAAYILEKFSTWTN EFR LEDGGLERKFSLD+LLT +ML
Sbjct: 301 HIQCTKPDTVGSALNDSPVGLAAYILEKFSTWTNTEFRYLEDGGLERKFSLDDLLTNVML 360
Query: 1243 YWTTGTITSSQRFYKENLGQGVMANKHEAIKVHVPTGFAAFPSEVLHCPEKWVKNKYPKL 1422
YWTTGTI SSQRFYKENLGQG M KHE +KV+VPTGF+AFP E+LH PEKWV+ KYPKL
Sbjct: 361 YWTTGTIISSQRFYKENLGQGWMTQKHERMKVYVPTGFSAFPFELLHTPEKWVRFKYPKL 420
Query: 1423 ISYSYMARGGHFAAFEEPELLAQDIRKFMGLLEQQ 1527
ISYSYM RGGHFAAFEEPELLAQDIRKF+ +LE+Q
Sbjct: 421 ISYSYMVRGGHFAAFEEPELLAQDIRKFLSVLERQ 455
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 72,302,751
Number of extensions: 2055074
Number of successful extensions: 8340
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 8314
Number of HSP's successfully gapped: 2
Length of query: 607
Length of database: 18,297,164
Length adjustment: 108
Effective length of query: 499
Effective length of database: 14,737,052
Effective search space: 7353788948
Effective search space used: 7353788948
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007079
(1822 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_034275.1| epoxide hydrolase 1 [Mus musculus]. 795 0.0
>ref|NP_034275.1| epoxide hydrolase 1 [Mus musculus].
Length = 455
Score = 795 bits (2054), Expect = 0.0
Identities = 371/455 (81%), Positives = 413/455 (90%), Gaps = 1/455 (0%)
Frame = +1
Query: 166 MWLEILLASVLGFVIYWFVSKDKEETLLLGDGWWGPGSRPAAAEDESIRPFKVETSDEEI 345
MWLE++LASVLGFVIYWFVS+DKEETL L DGWWGPGS+P+A EDESIRPFKVETSDEEI
Sbjct: 1 MWLELILASVLGFVIYWFVSRDKEETLPLEDGWWGPGSKPSAKEDESIRPFKVETSDEEI 60
Query: 346 NDLHQRIEKFRLTPPLEDSRFHYGFNSNYLKKIISYWRNTFDWRKQVEVLNKYPHFKTKI 525
DLHQRI++FR +PPLE SRFHYGFNS+YLKK++S+WRN FDWRKQVE+LN+YPHFKTKI
Sbjct: 61 KDLHQRIDRFRASPPLEGSRFHYGFNSSYLKKVVSFWRNEFDWRKQVEILNQYPHFKTKI 120
Query: 526 EGLDIHFIHVKPPQLPSGRTAKPLLMVHGWPGCFYEFYKIIPLLTDPKNHGLSDEHVFEV 705
EGLDIHFIHVKPPQLPSGRT KPLLMVHGWPG FYEFYKIIPLLTDPK HGLSDEHVFEV
Sbjct: 121 EGLDIHFIHVKPPQLPSGRTPKPLLMVHGWPGSFYEFYKIIPLLTDPKTHGLSDEHVFEV 180
Query: 706 ICPSIPGYGFSEASSKKGFNSVATARIFYKLMLRLGFQEFYLQGGDWGALICTNMAQLVP 885
ICPSIPGYGFSEASSKKG NSVATARIFYKLM RLGFQ+FY+QGGDWG+LICTN+AQ+VP
Sbjct: 181 ICPSIPGYGFSEASSKKGLNSVATARIFYKLMSRLGFQKFYIQGGDWGSLICTNIAQMVP 240
Query: 886 SHVKGLHLNVALVLRNVYTLTXXXXXXXXXXXXYTERDLELLYPFK-KTFYTLMRESGYM 1062
+HVKGLHLN++ + RN+Y+LT YTE+DLELLYPFK K FY +MRESGY+
Sbjct: 241 NHVKGLHLNMSFISRNIYSLTPLLGQRFGRFLGYTEKDLELLYPFKEKVFYNIMRESGYL 300
Query: 1063 HIQSTKPDTVGCALNDSPVGLAAYILEKFSTWTNEEFRDLEDGGLERKFSLDELLTVIML 1242
HIQ+TKPDTVGCALNDSPVGLAAYILEKFSTWT E+R+LEDGGLERKFSL++LLT IM+
Sbjct: 301 HIQATKPDTVGCALNDSPVGLAAYILEKFSTWTKSEYRELEDGGLERKFSLEDLLTNIMI 360
Query: 1243 YWTTGTITSSQRFYKENLGQGVMANKHEAIKVHVPTGFAAFPSEVLHCPEKWVKNKYPKL 1422
YWTTGTI SSQRFYKENLGQGVM ++HE +KV VPTG++AFPSE+LH PEKWVK KYPKL
Sbjct: 361 YWTTGTIVSSQRFYKENLGQGVMVHRHEGMKVFVPTGYSAFPSEILHAPEKWVKVKYPKL 420
Query: 1423 ISYSYMARGGHFAAFEEPELLAQDIRKFMGLLEQQ 1527
ISYSYM RGGHFAAFEEP+LLAQDIRKF+ L E Q
Sbjct: 421 ISYSYMERGGHFAAFEEPKLLAQDIRKFVSLAELQ 455
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 60,776,071
Number of extensions: 1690186
Number of successful extensions: 6522
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6494
Number of HSP's successfully gapped: 1
Length of query: 607
Length of database: 15,617,559
Length adjustment: 107
Effective length of query: 500
Effective length of database: 12,403,707
Effective search space: 6201853500
Effective search space used: 6201853500
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007079
(1822 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_999520.1| epoxide hydrolase 1 [Sus scrofa]. 912 0.0
>ref|NP_999520.1| epoxide hydrolase 1 [Sus scrofa].
Length = 454
Score = 912 bits (2358), Expect = 0.0
Identities = 440/454 (96%), Positives = 441/454 (97%)
Frame = +1
Query: 166 MWLEILLASVLGFVIYWFVSKDKEETLLLGDGWWGPGSRPAAAEDESIRPFKVETSDEEI 345
MWLEILLASVLGFVIYWFVSKDKEETLLLGDGWWGPGSRPAAAEDESIRPFKVETSDEEI
Sbjct: 1 MWLEILLASVLGFVIYWFVSKDKEETLLLGDGWWGPGSRPAAAEDESIRPFKVETSDEEI 60
Query: 346 NDLHQRIEKFRLTPPLEDSRFHYGFNSNYLKKIISYWRNTFDWRKQVEVLNKYPHFKTKI 525
NDLHQRIEKFRLTPPLEDSRFHYGFNSNYLKKIISYWRNTFDWRKQVEVLNKYPHFKTKI
Sbjct: 61 NDLHQRIEKFRLTPPLEDSRFHYGFNSNYLKKIISYWRNTFDWRKQVEVLNKYPHFKTKI 120
Query: 526 EGLDIHFIHVKPPQLPSGRTAKPLLMVHGWPGCFYEFYKIIPLLTDPKNHGLSDEHVFEV 705
EGLDIHFIHVKPPQLPSGRTAKPLLMVHGWPGCFYEFYKIIPLLTDPKNHGLSDEHVFEV
Sbjct: 121 EGLDIHFIHVKPPQLPSGRTAKPLLMVHGWPGCFYEFYKIIPLLTDPKNHGLSDEHVFEV 180
Query: 706 ICPSIPGYGFSEASSKKGFNSVATARIFYKLMLRLGFQEFYLQGGDWGALICTNMAQLVP 885
ICPSIPGYGFSEASSKKGFNSVA ARIFYKLMLRLGFQEFYLQGGDWG+LICTNMAQLVP
Sbjct: 181 ICPSIPGYGFSEASSKKGFNSVAAARIFYKLMLRLGFQEFYLQGGDWGSLICTNMAQLVP 240
Query: 886 SHVKGLHLNVALVLRNVYTLTXXXXXXXXXXXXYTERDLELLYPFKKTFYTLMRESGYMH 1065
SHVKGLHLNVALVLRNVYTLT YTERDLELLYPFKKTFYTLMRESGYMH
Sbjct: 241 SHVKGLHLNVALVLRNVYTLTFFLGRRLGRLFGYTERDLELLYPFKKTFYTLMRESGYMH 300
Query: 1066 IQSTKPDTVGCALNDSPVGLAAYILEKFSTWTNEEFRDLEDGGLERKFSLDELLTVIMLY 1245
IQSTKPDTVGCALNDSPVGLAAYILEKFSTWTNEEFRDLEDGGLERKFSLDELLTVIMLY
Sbjct: 301 IQSTKPDTVGCALNDSPVGLAAYILEKFSTWTNEEFRDLEDGGLERKFSLDELLTVIMLY 360
Query: 1246 WTTGTITSSQRFYKENLGQGVMANKHEAIKVHVPTGFAAFPSEVLHCPEKWVKNKYPKLI 1425
WTTGTITSSQRFYKENLGQGVMANKHEAIKVHVPTGFAAFPSEVLHCPEKWVKNKYPKLI
Sbjct: 361 WTTGTITSSQRFYKENLGQGVMANKHEAIKVHVPTGFAAFPSEVLHCPEKWVKNKYPKLI 420
Query: 1426 SYSYMARGGHFAAFEEPELLAQDIRKFMGLLEQQ 1527
SYSYMARGGHFAAFEEPELLAQDIRKFMGLLEQQ
Sbjct: 421 SYSYMARGGHFAAFEEPELLAQDIRKFMGLLEQQ 454
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 45,830,492
Number of extensions: 1328315
Number of successful extensions: 5543
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5514
Number of HSP's successfully gapped: 1
Length of query: 607
Length of database: 11,343,932
Length adjustment: 105
Effective length of query: 502
Effective length of database: 8,729,747
Effective search space: 4382332994
Effective search space used: 4382332994
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007079
(1822 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr10 807 0.0
gb|JH118670.1| Sus scrofa unplaced genomic scaffold ChrUScaf1591 137 2e-29
Sscrofa_Chr12 64 3e-07
>Sscrofa_Chr10
|| Length = 79102373
Score = 807 bits (407), Expect = 0.0
Identities = 465/479 (97%), Gaps = 4/479 (0%)
Strand = Plus / Minus
Query: 1329 gatcaaggtccacgtgcccaccggctttgctgccttcccttccgaggtgttacactgccc 1388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16017065 gatcaaggtccacgtgcccaccggctttgctgccttcccttccgaggtgttacactgccc 16017006
Query: 1389 agaaaagtgggtgaagaacaagtacccaaaactcatctcctattcctacatggcccgtgg 1448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16017005 agaaaagtgggtgaagaacaagtacccaaaactcatctcctattcctacatggcccgtgg 16016946
Query: 1449 gggccactttgccgcctttgaggagccggagctgctggcccaggacatccgcaagttcat 1508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16016945 gggccactttgccgcctttgaggagccggagctgctggcccaggacatccgcaagttcat 16016886
Query: 1509 ggggctgttggagcagcagtgaccacagcgggtggggggactggctgtcacctcataggc 1568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16016885 ggggctgttggagcagcagtgaccacagcgggtggggggactggctgtcacctcataggc 16016826
Query: 1569 atcccctgctcccaagtggtaggctccctcccgatccctgtccttttcccccgaagctcc 1628
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 16016825 atcccctgctcccaagtggtaggctccctcccgatccctgtccttttccccggaagctcc 16016766
Query: 1629 cggcaaaagtggggctggcagggtggtggcttcccaggcttctgtggagacccccca-tt 1687
||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct: 16016765 cggcagaagtggggctggcagggtggtggcttcccaggcttctgtggagacgccccattt 16016706
Query: 1688 tcctaggaacacactggcttccgtccctgccacctgggacccccaggcctgcccctcagc 1747
|||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct: 16016705 tcctaggaacacactggcttccgtccctgccagctggga-ccccaggcctgcccctcagc 16016647
Query: 1748 aaatgcttcccacacactttgttaaacaaaatgactttaatgaaaaatgaattttcctt 1806
| ||||| ||||||||| ||||||| ||| |||||||| |||| ||||| |||||||||
Sbjct: 16016646 atatgctccccacacac-ttgttaagcaacatgactttgatgataaatg-attttcctt 16016590
Score = 408 bits (206), Expect = e-111
Identities = 209/210 (99%)
Strand = Plus / Minus
Query: 885 cagccacgtgaaaggcctgcacttgaacgtagccctggttttaagaaatgtctacaccct 944
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16021644 cagccacgtgaaaggcctgcacttgaacgtagccctggttttaagaaatgtctacaccct 16021585
Query: 945 gacctttttcctgggacggcgtttggggaggctttttggctacactgagagggacctcga 1004
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 16021584 gacctttttcctgggacggcgtttgggaaggctttttggctacactgagagggacctcga 16021525
Query: 1005 gctgctttaccccttcaagaagaccttctacaccttgatgagggagagcggctacatgca 1064
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16021524 gctgctttaccccttcaagaagaccttctacaccttgatgagggagagcggctacatgca 16021465
Query: 1065 catccagagcaccaagccggacaccgtggg 1094
||||||||||||||||||||||||||||||
Sbjct: 16021464 catccagagcaccaagccggacaccgtggg 16021435
Score = 408 bits (206), Expect = e-111
Identities = 223/231 (96%)
Strand = Plus / Minus
Query: 528 agggctggacatccacttcatccacgtgaagnnnnnnnagctgccctccggccgcaccgc 587
||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 16023141 agggctggacatccacttcatccacgtgaagcccccccagctgccctccggccgcaccgc 16023082
Query: 588 gaagcccttgctgatggtgcacggctggcctggctgcttctacgagttttataagatcat 647
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 16023081 gaagcccttgctgatggtgcatggctggcctggctgcttctacgagttttataagatcat 16023022
Query: 648 cccgctcctgacggaccccaagaaccacggcctgagcgatgagcatgtgttcgaagtcat 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16023021 cccgctcctgacggaccccaagaaccacggcctgagcgatgagcatgtgttcgaagtcat 16022962
Query: 708 ctgtccatccattcctggctacggcttctcagaggcatcctctaagaaagg 758
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16022961 ctgtccatccattcctggctacggcttctcagaggcatcctctaagaaagg 16022911
Score = 381 bits (192), Expect = e-102
Identities = 192/192 (100%)
Strand = Plus / Minus
Query: 158 caggagtcatgtggctggaaatactcctcgcctctgtgctgggctttgtcatctactggt 217
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16032200 caggagtcatgtggctggaaatactcctcgcctctgtgctgggctttgtcatctactggt 16032141
Query: 218 tcgtctccaaggacaaggaggagaccttgctccttggagatggctggtgggggcccggat 277
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16032140 tcgtctccaaggacaaggaggagaccttgctccttggagatggctggtgggggcccggat 16032081
Query: 278 caaggcccgcggctgcggaggacgagagcatccggccattcaaggtggagacgtcagacg 337
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16032080 caaggcccgcggctgcggaggacgagagcatccggccattcaaggtggagacgtcagacg 16032021
Query: 338 aggagatcaacg 349
||||||||||||
Sbjct: 16032020 aggagatcaacg 16032009
Score = 361 bits (182), Expect = 9e-97
Identities = 182/182 (100%)
Strand = Plus / Minus
Query: 349 gacttacaccagaggatcgagaagtttcgcttaaccccgcctttggaggacagccgcttc 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16029503 gacttacaccagaggatcgagaagtttcgcttaaccccgcctttggaggacagccgcttc 16029444
Query: 409 cactacgggttcaactccaactatctgaagaaaatcatctcctactggcggaacacattc 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16029443 cactacgggttcaactccaactatctgaagaaaatcatctcctactggcggaacacattc 16029384
Query: 469 gactggaggaagcaggtggaggttctcaacaagtaccctcacttcaagaccaagattgaa 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16029383 gactggaggaagcaggtggaggttctcaacaagtaccctcacttcaagaccaagattgaa 16029324
Query: 529 gg 530
||
Sbjct: 16029323 gg 16029322
Score = 311 bits (157), Expect = 7e-82
Identities = 160/161 (99%)
Strand = Plus / Minus
Query: 1 cccatggacccgccgctcccgagagccaggaggcggagggccttgtttattattttatat 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 16036303 cccatggacccgccgctcccgagagccaggaggcggagggcattgtttattattttatat 16036244
Query: 61 tttggaagatttgtgcaggcttgagcgacacactctggcagacggtcgcggcttccgtgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16036243 tttggaagatttgtgcaggcttgagcgacacactctggcagacggtcgcggcttccgtgc 16036184
Query: 121 agtcgtggctcgccttcgcaccgagggtccccaagttcagg 161
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 16036183 agtcgtggctcgccttcgcaccgagggtccccaagttcagg 16036143
Score = 256 bits (129), Expect = 4e-65
Identities = 129/129 (100%)
Strand = Plus / Minus
Query: 1201 aggaagttctccctggatgagctgctgacagtcatcatgctctactggacaacgggcacc 1260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16018042 aggaagttctccctggatgagctgctgacagtcatcatgctctactggacaacgggcacc 16017983
Query: 1261 atcacctcctcccagcgcttctacaaggagaacctaggacagggcgtgatggccaataag 1320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16017982 atcacctcctcccagcgcttctacaaggagaacctaggacagggcgtgatggccaataag 16017923
Query: 1321 catgaggcg 1329
|||||||||
Sbjct: 16017922 catgaggcg 16017914
Score = 238 bits (120), Expect = 9e-60
Identities = 129/132 (97%)
Strand = Plus / Minus
Query: 756 aggcttcaactcagtggccactgccaggatcttttacaagctgatgctgcggctgggctt 815
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 16022289 aggcttcaactcagtggctgctgccaggatcttttacaagctgatgctgcggctgggctt 16022230
Query: 816 ccaggaattctaccttcaaggcggagactggggggccctgatctgcaccaacatggccca 875
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 16022229 ccaggaattctaccttcaaggcggagactgggggtccctgatctgcaccaacatggccca 16022170
Query: 876 gctggtgcccag 887
||||||||||||
Sbjct: 16022169 gctggtgcccag 16022158
Score = 220 bits (111), Expect = 2e-54
Identities = 111/111 (100%)
Strand = Plus / Minus
Query: 1093 ggctgcgccctgaatgactcccccgtgggcctggctgcctacatcctagagaagttttct 1152
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16019440 ggctgcgccctgaatgactcccccgtgggcctggctgcctacatcctagagaagttttct 16019381
Query: 1153 acctggaccaacgaagagttccgggacctggaggatggcggcctggagagg 1203
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16019380 acctggaccaacgaagagttccgggacctggaggatggcggcctggagagg 16019330
>gb|JH118670.1| Sus scrofa unplaced genomic scaffold ChrUScaf1591
Length = 183348
Score = 137 bits (69), Expect = 2e-29
Identities = 78/81 (96%)
Strand = Plus / Minus
Query: 1347 caccggctttgctgccttcccttccgaggtgttacactgcccagaaaagtgggtgaagaa 1406
|||||||||||||||||||||||| ||||||||||||||||| ||| |||||||||||||
Sbjct: 101897 caccggctttgctgccttcccttcagaggtgttacactgccctgaacagtgggtgaagaa 101838
Query: 1407 caagtacccaaaactcatctc 1427
|||||||||||||||||||||
Sbjct: 101837 caagtacccaaaactcatctc 101817
>Sscrofa_Chr12
|| Length = 63588571
Score = 63.9 bits (32), Expect = 3e-07
Identities = 116/144 (80%)
Strand = Plus / Plus
Query: 1178 acctggaggatggcggcctggagaggaagttctccctggatgagctgctgacagtcatca 1237
||||||||||| | | |||||| || |||| ||||||||| | |||| || | || ||
Sbjct: 29973670 acctggaggatagagacctggatagcaagtactccctggaaaatctgcagaggggcacca 29973729
Query: 1238 tgctctactggacaacgggcaccatcacctcctcccagcgcttctacaaggagaacctag 1297
| |||||||||| || ||| |||||||| ||| ||| | | |||||||||||||| || |
Sbjct: 29973730 tactctactggaaaatgggaaccatcacttccaccctgtgtttctacaaggagaaactgg 29973789
Query: 1298 gacagggcgtgatggccaataagc 1321
| |||||| | |||||||||||||
Sbjct: 29973790 ggcagggcataatggccaataagc 29973813
Score = 63.9 bits (32), Expect = 3e-07
Identities = 116/144 (80%)
Strand = Plus / Plus
Query: 1178 acctggaggatggcggcctggagaggaagttctccctggatgagctgctgacagtcatca 1237
||||||||||| | | |||||| || |||| ||||||||| | |||| || | || ||
Sbjct: 30105437 acctggaggatagagacctggatagcaagtactccctggaaaatctgcagaggggcacca 30105496
Query: 1238 tgctctactggacaacgggcaccatcacctcctcccagcgcttctacaaggagaacctag 1297
| |||||||||| || ||| |||||||| ||| ||| | | |||||||||||||| || |
Sbjct: 30105497 tactctactggaaaatgggaaccatcacttccaccctgtgtttctacaaggagaaactgg 30105556
Query: 1298 gacagggcgtgatggccaataagc 1321
| |||||| | |||||||||||||
Sbjct: 30105557 ggcagggcataatggccaataagc 30105580
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 50,066,933
Number of extensions: 446
Number of successful extensions: 446
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 443
Number of HSP's successfully gapped: 12
Length of query: 1822
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1800
Effective length of database: 2,808,408,574
Effective search space: 5055135433200
Effective search space used: 5055135433200
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)