Animal-Genome cDNA 20110601C-007079


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007079
         (1822 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001029801.1| epoxide hydrolase 1 [Bos taurus].                 824   0.0  

>ref|NP_001029801.1| epoxide hydrolase 1 [Bos taurus].
          Length = 451

 Score =  824 bits (2128), Expect = 0.0
 Identities = 392/454 (86%), Positives = 415/454 (91%)
 Frame = +1

Query: 166  MWLEILLASVLGFVIYWFVSKDKEETLLLGDGWWGPGSRPAAAEDESIRPFKVETSDEEI 345
            MWLEILLASVLGFVIYWFVSKDKEETL L DGWWGPG RP A ED+SIRPFKVETSDEEI
Sbjct: 1    MWLEILLASVLGFVIYWFVSKDKEETLPLEDGWWGPGVRPTAGEDKSIRPFKVETSDEEI 60

Query: 346  NDLHQRIEKFRLTPPLEDSRFHYGFNSNYLKKIISYWRNTFDWRKQVEVLNKYPHFKTKI 525
            NDLHQRI++ RLTPPLEDSRFHYGFNSNYLKKIISYWRN FDWRKQVE+LNKYPHFKTKI
Sbjct: 61   NDLHQRIDRVRLTPPLEDSRFHYGFNSNYLKKIISYWRNEFDWRKQVEILNKYPHFKTKI 120

Query: 526  EGLDIHFIHVKPPQLPSGRTAKPLLMVHGWPGCFYEFYKIIPLLTDPKNHGLSDEHVFEV 705
            EGLDIHFIHVKPP LPSG+T KPLLMVHGWPG FYEFYKIIP LTDPKNHGLSDEHVFEV
Sbjct: 121  EGLDIHFIHVKPPNLPSGQTPKPLLMVHGWPGSFYEFYKIIPFLTDPKNHGLSDEHVFEV 180

Query: 706  ICPSIPGYGFSEASSKKGFNSVATARIFYKLMLRLGFQEFYLQGGDWGALICTNMAQLVP 885
            ICPSIPGY FSEASSKKGFNSVATARIFYKLMLRLGFQ+FY+QGGDWGALICTNMAQLVP
Sbjct: 181  ICPSIPGYSFSEASSKKGFNSVATARIFYKLMLRLGFQKFYIQGGDWGALICTNMAQLVP 240

Query: 886  SHVKGLHLNVALVLRNVYTLTXXXXXXXXXXXXYTERDLELLYPFKKTFYTLMRESGYMH 1065
            SH+KGLHLN+AL+LRN YTLT            YTERD+EL+YPFKK F++L+RESGY+H
Sbjct: 241  SHIKGLHLNMALILRNFYTLTLPLGRCFGGLFGYTERDMELIYPFKKIFFSLLRESGYLH 300

Query: 1066 IQSTKPDTVGCALNDSPVGLAAYILEKFSTWTNEEFRDLEDGGLERKFSLDELLTVIMLY 1245
            IQSTKPDTVGCALNDSPVGLAAYILEKFSTWTN EFRDLEDGGLERKFSLD+LLT IMLY
Sbjct: 301  IQSTKPDTVGCALNDSPVGLAAYILEKFSTWTNSEFRDLEDGGLERKFSLDDLLTGIMLY 360

Query: 1246 WTTGTITSSQRFYKENLGQGVMANKHEAIKVHVPTGFAAFPSEVLHCPEKWVKNKYPKLI 1425
            WTTGTITSSQRFYKENLGQ    NKHE +KV+VPTGFAAFP E++H PEKWVK KYP LI
Sbjct: 361  WTTGTITSSQRFYKENLGQ---VNKHEMLKVYVPTGFAAFPCELMHLPEKWVKTKYPNLI 417

Query: 1426 SYSYMARGGHFAAFEEPELLAQDIRKFMGLLEQQ 1527
            SYSYM RGGHFAAFEEPELLAQDIRKF+GL E+Q
Sbjct: 418  SYSYMPRGGHFAAFEEPELLAQDIRKFVGLQERQ 451


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 70,857,243
Number of extensions: 2047694
Number of successful extensions: 8572
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 8535
Number of HSP's successfully gapped: 1
Length of query: 607
Length of database: 17,681,374
Length adjustment: 108
Effective length of query: 499
Effective length of database: 14,107,870
Effective search space: 7039827130
Effective search space used: 7039827130
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007079
         (1822 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_537235.2| PREDICTED: similar to Epoxide hydrolase 1 (Micr...   803   0.0  
Alignment   gi|XP_863972.1| PREDICTED: similar to Epoxide hydrolase 1 (Micr...   775   0.0  
Alignment   gi|XP_863989.1| PREDICTED: similar to epoxide hydrolase 1 isofo...   712   0.0  

>ref|XP_537235.2| PREDICTED: similar to Epoxide hydrolase 1 (Microsomal epoxide
            hydrolase) (Epoxide hydratase) isoform 1 [Canis
            familiaris].
          Length = 454

 Score =  803 bits (2074), Expect = 0.0
 Identities = 382/453 (84%), Positives = 410/453 (90%), Gaps = 1/453 (0%)
 Frame = +1

Query: 166  MWLEILLASVLGFVIYWFVSKDKEETLLLGDGWWGPGSRPAAAEDESIRPFKVETSDEEI 345
            MWLEI+LA +LGFVIYWFVS+DKEETL LGDGWWGPG+RP A EDES+RPFKVETS+EEI
Sbjct: 1    MWLEIILALLLGFVIYWFVSRDKEETLPLGDGWWGPGARPTATEDESVRPFKVETSEEEI 60

Query: 346  NDLHQRIEKFRLTPPLEDSRFHYGFNSNYLKKIISYWRNTFDWRKQVEVLNKYPHFKTKI 525
             DLHQRI++ RLTPPLED RFHYGFNS YLKKI+SYWRN FDWRKQVE+LN+YPHFKTKI
Sbjct: 61   EDLHQRIDRVRLTPPLEDGRFHYGFNSKYLKKILSYWRNEFDWRKQVEILNRYPHFKTKI 120

Query: 526  EGLDIHFIHVKPPQLPSGRTAKPLLMVHGWPGCFYEFYKIIPLLTDPKNHGLSDEHVFEV 705
            EGLDIHFIHVKPPQLPS  T KPLLMVHGWPG FYEFYKIIPLLTDPKNHGLSDEHVFEV
Sbjct: 121  EGLDIHFIHVKPPQLPSSSTPKPLLMVHGWPGSFYEFYKIIPLLTDPKNHGLSDEHVFEV 180

Query: 706  ICPSIPGYGFSEASSKKGFNSVATARIFYKLMLRLGFQEFYLQGGDWGALICTNMAQLVP 885
            ICPSIPGY FSEASSKKG NSVATARIFYKLMLRLGFQEFY+QGGDWG+LICTNMAQ+VP
Sbjct: 181  ICPSIPGYSFSEASSKKGLNSVATARIFYKLMLRLGFQEFYIQGGDWGSLICTNMAQMVP 240

Query: 886  SHVKGLHLNVALVLRNVYTLTXXXXXXXXXXXXYTERDLELLYPFK-KTFYTLMRESGYM 1062
            SHVKGLHLN+AL+L   Y LT            YT+RDLELLYPFK K FY+LMRESGYM
Sbjct: 241  SHVKGLHLNMALIL-GPYILTLLLGRRILSLLGYTQRDLELLYPFKEKVFYSLMRESGYM 299

Query: 1063 HIQSTKPDTVGCALNDSPVGLAAYILEKFSTWTNEEFRDLEDGGLERKFSLDELLTVIML 1242
            HIQ TKPDTVGCALNDSPVGLAAYILEKFSTWTN EFRDLE+GGL+RKFSLD+LLT +ML
Sbjct: 300  HIQCTKPDTVGCALNDSPVGLAAYILEKFSTWTNPEFRDLENGGLDRKFSLDDLLTNVML 359

Query: 1243 YWTTGTITSSQRFYKENLGQGVMANKHEAIKVHVPTGFAAFPSEVLHCPEKWVKNKYPKL 1422
            YWTTGTI SSQRFYKENLGQG MAN H+ +KV+VPTGFAAFP E++H PEKWVK KYPKL
Sbjct: 360  YWTTGTIASSQRFYKENLGQGFMANAHDRMKVYVPTGFAAFPCELMHVPEKWVKAKYPKL 419

Query: 1423 ISYSYMARGGHFAAFEEPELLAQDIRKFMGLLE 1521
            ISYSYMARGGHFAAFEEPELLAQDIRKF+GLLE
Sbjct: 420  ISYSYMARGGHFAAFEEPELLAQDIRKFVGLLE 452


>ref|XP_863972.1| PREDICTED: similar to Epoxide hydrolase 1 (Microsomal epoxide
            hydrolase) (Epoxide hydratase) isoform 2 [Canis
            familiaris].
          Length = 441

 Score =  775 bits (2001), Expect = 0.0
 Identities = 371/453 (81%), Positives = 397/453 (87%), Gaps = 1/453 (0%)
 Frame = +1

Query: 166  MWLEILLASVLGFVIYWFVSKDKEETLLLGDGWWGPGSRPAAAEDESIRPFKVETSDEEI 345
            MWLEI+LA +LGFVIYWFVS+DKEETL LGDGWWGPG+RP A EDES+RPFKVETS+EEI
Sbjct: 1    MWLEIILALLLGFVIYWFVSRDKEETLPLGDGWWGPGARPTATEDESVRPFKVETSEEEI 60

Query: 346  NDLHQRIEKFRLTPPLEDSRFHYGFNSNYLKKIISYWRNTFDWRKQVEVLNKYPHFKTKI 525
             DLHQRI++ RLTPPLED RFHYGFNS YLKKI+SYWRN FDWRKQVE+LN+YPHFKTKI
Sbjct: 61   EDLHQRIDRVRLTPPLEDGRFHYGFNSKYLKKILSYWRNEFDWRKQVEILNRYPHFKTKI 120

Query: 526  EGLDIHFIHVKPPQLPSGRTAKPLLMVHGWPGCFYEFYKIIPLLTDPKNHGLSDEHVFEV 705
            EGLDIHFIHVKPPQLPS  T KPLLMVHGWPG FYEFYKIIPLLTDPKNHGLSDEHVFEV
Sbjct: 121  EGLDIHFIHVKPPQLPSSSTPKPLLMVHGWPGSFYEFYKIIPLLTDPKNHGLSDEHVFEV 180

Query: 706  ICPSIPGYGFSEASSKKGFNSVATARIFYKLMLRLGFQEFYLQGGDWGALICTNMAQLVP 885
            ICPSIPGY FSEASSKKG NSVATARIFYKLMLRLGFQEFY+QGGDWG+LICTNMAQ+VP
Sbjct: 181  ICPSIPGYSFSEASSKKGLNSVATARIFYKLMLRLGFQEFYIQGGDWGSLICTNMAQMVP 240

Query: 886  SHVKGLHLNVALVLRNVYTLTXXXXXXXXXXXXYTERDLELLYPFK-KTFYTLMRESGYM 1062
                          R  Y LT            YT+RDLELLYPFK K FY+LMRESGYM
Sbjct: 241  --------------RRPYILTLLLGRRILSLLGYTQRDLELLYPFKEKVFYSLMRESGYM 286

Query: 1063 HIQSTKPDTVGCALNDSPVGLAAYILEKFSTWTNEEFRDLEDGGLERKFSLDELLTVIML 1242
            HIQ TKPDTVGCALNDSPVGLAAYILEKFSTWTN EFRDLE+GGL+RKFSLD+LLT +ML
Sbjct: 287  HIQCTKPDTVGCALNDSPVGLAAYILEKFSTWTNPEFRDLENGGLDRKFSLDDLLTNVML 346

Query: 1243 YWTTGTITSSQRFYKENLGQGVMANKHEAIKVHVPTGFAAFPSEVLHCPEKWVKNKYPKL 1422
            YWTTGTI SSQRFYKENLGQG MAN H+ +KV+VPTGFAAFP E++H PEKWVK KYPKL
Sbjct: 347  YWTTGTIASSQRFYKENLGQGFMANAHDRMKVYVPTGFAAFPCELMHVPEKWVKAKYPKL 406

Query: 1423 ISYSYMARGGHFAAFEEPELLAQDIRKFMGLLE 1521
            ISYSYMARGGHFAAFEEPELLAQDIRKF+GLLE
Sbjct: 407  ISYSYMARGGHFAAFEEPELLAQDIRKFVGLLE 439


>ref|XP_863989.1| PREDICTED: similar to epoxide hydrolase 1 isoform 3 [Canis
            familiaris].
          Length = 412

 Score =  712 bits (1839), Expect = 0.0
 Identities = 348/453 (76%), Positives = 373/453 (82%), Gaps = 1/453 (0%)
 Frame = +1

Query: 166  MWLEILLASVLGFVIYWFVSKDKEETLLLGDGWWGPGSRPAAAEDESIRPFKVETSDEEI 345
            MWLEI+LA +LGFVIYWFVS+DKEETL LGDGWWGPG+RP A EDES+RPFKVETS+EEI
Sbjct: 1    MWLEIILALLLGFVIYWFVSRDKEETLPLGDGWWGPGARPTATEDESVRPFKVETSEEEI 60

Query: 346  NDLHQRIEKFRLTPPLEDSRFHYGFNSNYLKKIISYWRNTFDWRKQVEVLNKYPHFKTKI 525
             DLHQRI++ RLTPPLED RFHYGFNS YLKKI+SYWRN FDWRKQVE+LN+YPHFKTKI
Sbjct: 61   EDLHQRIDRVRLTPPLEDGRFHYGFNSKYLKKILSYWRNEFDWRKQVEILNRYPHFKTKI 120

Query: 526  EGLDIHFIHVKPPQLPSGRTAKPLLMVHGWPGCFYEFYKIIPLLTDPKNHGLSDEHVFEV 705
            EGLDIHFIHVKPPQLPS  T KPLLMVHGWPG FYEFYKIIPLLTDPKNHGLSDEHVFEV
Sbjct: 121  EGLDIHFIHVKPPQLPSSSTPKPLLMVHGWPGSFYEFYKIIPLLTDPKNHGLSDEHVFEV 180

Query: 706  ICPSIPGYGFSEASSKKGFNSVATARIFYKLMLRLGFQEFYLQGGDWGALICTNMAQLVP 885
            ICPSIPGY FSEASSKKG NSVATARIFYKLMLRLGFQEFY+QGGDWG+LICTNMAQ+VP
Sbjct: 181  ICPSIPGYSFSEASSKKGLNSVATARIFYKLMLRLGFQEFYIQGGDWGSLICTNMAQMVP 240

Query: 886  SHVKGLHLNVALVLRNVYTLTXXXXXXXXXXXXYTERDLELLYPFK-KTFYTLMRESGYM 1062
            SHVKGLHLN+AL+L   Y LT            YT+RDLELLYPFK K FY+LMRESGYM
Sbjct: 241  SHVKGLHLNMALIL-GPYILTLLLGRRILSLLGYTQRDLELLYPFKEKVFYSLMRESGYM 299

Query: 1063 HIQSTKPDTVGCALNDSPVGLAAYILEKFSTWTNEEFRDLEDGGLERKFSLDELLTVIML 1242
            HIQ TKPDTVGCALNDSPVGLAAYILEKFSTWTN EFRDLE+GGL+R             
Sbjct: 300  HIQCTKPDTVGCALNDSPVGLAAYILEKFSTWTNPEFRDLENGGLDR------------- 346

Query: 1243 YWTTGTITSSQRFYKENLGQGVMANKHEAIKVHVPTGFAAFPSEVLHCPEKWVKNKYPKL 1422
                                         +KV+VPTGFAAFP E++H PEKWVK KYPKL
Sbjct: 347  -----------------------------MKVYVPTGFAAFPCELMHVPEKWVKAKYPKL 377

Query: 1423 ISYSYMARGGHFAAFEEPELLAQDIRKFMGLLE 1521
            ISYSYMARGGHFAAFEEPELLAQDIRKF+GLLE
Sbjct: 378  ISYSYMARGGHFAAFEEPELLAQDIRKFVGLLE 410


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 74,067,347
Number of extensions: 2122166
Number of successful extensions: 9074
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 9031
Number of HSP's successfully gapped: 4
Length of query: 607
Length of database: 18,874,504
Length adjustment: 109
Effective length of query: 498
Effective length of database: 15,240,880
Effective search space: 7589958240
Effective search space used: 7589958240
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007079
         (1822 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_000111.1| epoxide hydrolase 1 [Homo sapiens].                  799   0.0  
Alignment   gi|NP_001129490.1| epoxide hydrolase 1 [Homo sapiens].               799   0.0  

>ref|NP_000111.1| epoxide hydrolase 1 [Homo sapiens].
          Length = 455

 Score =  799 bits (2064), Expect = 0.0
 Identities = 383/455 (84%), Positives = 409/455 (89%), Gaps = 1/455 (0%)
 Frame = +1

Query: 166  MWLEILLASVLGFVIYWFVSKDKEETLLLGDGWWGPGSRPAAAEDESIRPFKVETSDEEI 345
            MWLEILL SVLGF IYWF+S+DKEETL L DGWWGPG+R AA ED+SIRPFKVETSDEEI
Sbjct: 1    MWLEILLTSVLGFAIYWFISRDKEETLPLEDGWWGPGTRSAAREDDSIRPFKVETSDEEI 60

Query: 346  NDLHQRIEKFRLTPPLEDSRFHYGFNSNYLKKIISYWRNTFDWRKQVEVLNKYPHFKTKI 525
            +DLHQRI+KFR TPPLEDS FHYGFNSNYLKK+ISYWRN FDW+KQVE+LN+YPHFKTKI
Sbjct: 61   HDLHQRIDKFRFTPPLEDSCFHYGFNSNYLKKVISYWRNEFDWKKQVEILNRYPHFKTKI 120

Query: 526  EGLDIHFIHVKPPQLPSGRTAKPLLMVHGWPGCFYEFYKIIPLLTDPKNHGLSDEHVFEV 705
            EGLDIHFIHVKPPQLP+G T KPLLMVHGWPG FYEFYKIIPLLTDPKNHGLSDEHVFEV
Sbjct: 121  EGLDIHFIHVKPPQLPAGHTPKPLLMVHGWPGSFYEFYKIIPLLTDPKNHGLSDEHVFEV 180

Query: 706  ICPSIPGYGFSEASSKKGFNSVATARIFYKLMLRLGFQEFYLQGGDWGALICTNMAQLVP 885
            ICPSIPGYGFSEASSKKGFNSVATARIFYKLMLRLGFQEFY+QGGDWG+LICTNMAQLVP
Sbjct: 181  ICPSIPGYGFSEASSKKGFNSVATARIFYKLMLRLGFQEFYIQGGDWGSLICTNMAQLVP 240

Query: 886  SHVKGLHLNVALVLRNVYTLTXXXXXXXXXXXXYTERDLELLYPFK-KTFYTLMRESGYM 1062
            SHVKGLHLN+ALVL N  TLT             TERD+ELLYP K K FY+LMRESGYM
Sbjct: 241  SHVKGLHLNMALVLSNFSTLTLLLGQRFGRFLGLTERDVELLYPVKEKVFYSLMRESGYM 300

Query: 1063 HIQSTKPDTVGCALNDSPVGLAAYILEKFSTWTNEEFRDLEDGGLERKFSLDELLTVIML 1242
            HIQ TKPDTVG ALNDSPVGLAAYILEKFSTWTN EFR LEDGGLERKFSLD+LLT +ML
Sbjct: 301  HIQCTKPDTVGSALNDSPVGLAAYILEKFSTWTNTEFRYLEDGGLERKFSLDDLLTNVML 360

Query: 1243 YWTTGTITSSQRFYKENLGQGVMANKHEAIKVHVPTGFAAFPSEVLHCPEKWVKNKYPKL 1422
            YWTTGTI SSQRFYKENLGQG M  KHE +KV+VPTGF+AFP E+LH PEKWV+ KYPKL
Sbjct: 361  YWTTGTIISSQRFYKENLGQGWMTQKHERMKVYVPTGFSAFPFELLHTPEKWVRFKYPKL 420

Query: 1423 ISYSYMARGGHFAAFEEPELLAQDIRKFMGLLEQQ 1527
            ISYSYM RGGHFAAFEEPELLAQDIRKF+ +LE+Q
Sbjct: 421  ISYSYMVRGGHFAAFEEPELLAQDIRKFLSVLERQ 455


>ref|NP_001129490.1| epoxide hydrolase 1 [Homo sapiens].
          Length = 455

 Score =  799 bits (2064), Expect = 0.0
 Identities = 383/455 (84%), Positives = 409/455 (89%), Gaps = 1/455 (0%)
 Frame = +1

Query: 166  MWLEILLASVLGFVIYWFVSKDKEETLLLGDGWWGPGSRPAAAEDESIRPFKVETSDEEI 345
            MWLEILL SVLGF IYWF+S+DKEETL L DGWWGPG+R AA ED+SIRPFKVETSDEEI
Sbjct: 1    MWLEILLTSVLGFAIYWFISRDKEETLPLEDGWWGPGTRSAAREDDSIRPFKVETSDEEI 60

Query: 346  NDLHQRIEKFRLTPPLEDSRFHYGFNSNYLKKIISYWRNTFDWRKQVEVLNKYPHFKTKI 525
            +DLHQRI+KFR TPPLEDS FHYGFNSNYLKK+ISYWRN FDW+KQVE+LN+YPHFKTKI
Sbjct: 61   HDLHQRIDKFRFTPPLEDSCFHYGFNSNYLKKVISYWRNEFDWKKQVEILNRYPHFKTKI 120

Query: 526  EGLDIHFIHVKPPQLPSGRTAKPLLMVHGWPGCFYEFYKIIPLLTDPKNHGLSDEHVFEV 705
            EGLDIHFIHVKPPQLP+G T KPLLMVHGWPG FYEFYKIIPLLTDPKNHGLSDEHVFEV
Sbjct: 121  EGLDIHFIHVKPPQLPAGHTPKPLLMVHGWPGSFYEFYKIIPLLTDPKNHGLSDEHVFEV 180

Query: 706  ICPSIPGYGFSEASSKKGFNSVATARIFYKLMLRLGFQEFYLQGGDWGALICTNMAQLVP 885
            ICPSIPGYGFSEASSKKGFNSVATARIFYKLMLRLGFQEFY+QGGDWG+LICTNMAQLVP
Sbjct: 181  ICPSIPGYGFSEASSKKGFNSVATARIFYKLMLRLGFQEFYIQGGDWGSLICTNMAQLVP 240

Query: 886  SHVKGLHLNVALVLRNVYTLTXXXXXXXXXXXXYTERDLELLYPFK-KTFYTLMRESGYM 1062
            SHVKGLHLN+ALVL N  TLT             TERD+ELLYP K K FY+LMRESGYM
Sbjct: 241  SHVKGLHLNMALVLSNFSTLTLLLGQRFGRFLGLTERDVELLYPVKEKVFYSLMRESGYM 300

Query: 1063 HIQSTKPDTVGCALNDSPVGLAAYILEKFSTWTNEEFRDLEDGGLERKFSLDELLTVIML 1242
            HIQ TKPDTVG ALNDSPVGLAAYILEKFSTWTN EFR LEDGGLERKFSLD+LLT +ML
Sbjct: 301  HIQCTKPDTVGSALNDSPVGLAAYILEKFSTWTNTEFRYLEDGGLERKFSLDDLLTNVML 360

Query: 1243 YWTTGTITSSQRFYKENLGQGVMANKHEAIKVHVPTGFAAFPSEVLHCPEKWVKNKYPKL 1422
            YWTTGTI SSQRFYKENLGQG M  KHE +KV+VPTGF+AFP E+LH PEKWV+ KYPKL
Sbjct: 361  YWTTGTIISSQRFYKENLGQGWMTQKHERMKVYVPTGFSAFPFELLHTPEKWVRFKYPKL 420

Query: 1423 ISYSYMARGGHFAAFEEPELLAQDIRKFMGLLEQQ 1527
            ISYSYM RGGHFAAFEEPELLAQDIRKF+ +LE+Q
Sbjct: 421  ISYSYMVRGGHFAAFEEPELLAQDIRKFLSVLERQ 455


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 72,302,751
Number of extensions: 2055074
Number of successful extensions: 8340
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 8314
Number of HSP's successfully gapped: 2
Length of query: 607
Length of database: 18,297,164
Length adjustment: 108
Effective length of query: 499
Effective length of database: 14,737,052
Effective search space: 7353788948
Effective search space used: 7353788948
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007079
         (1822 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_034275.1| epoxide hydrolase 1 [Mus musculus].                  795   0.0  

>ref|NP_034275.1| epoxide hydrolase 1 [Mus musculus].
          Length = 455

 Score =  795 bits (2054), Expect = 0.0
 Identities = 371/455 (81%), Positives = 413/455 (90%), Gaps = 1/455 (0%)
 Frame = +1

Query: 166  MWLEILLASVLGFVIYWFVSKDKEETLLLGDGWWGPGSRPAAAEDESIRPFKVETSDEEI 345
            MWLE++LASVLGFVIYWFVS+DKEETL L DGWWGPGS+P+A EDESIRPFKVETSDEEI
Sbjct: 1    MWLELILASVLGFVIYWFVSRDKEETLPLEDGWWGPGSKPSAKEDESIRPFKVETSDEEI 60

Query: 346  NDLHQRIEKFRLTPPLEDSRFHYGFNSNYLKKIISYWRNTFDWRKQVEVLNKYPHFKTKI 525
             DLHQRI++FR +PPLE SRFHYGFNS+YLKK++S+WRN FDWRKQVE+LN+YPHFKTKI
Sbjct: 61   KDLHQRIDRFRASPPLEGSRFHYGFNSSYLKKVVSFWRNEFDWRKQVEILNQYPHFKTKI 120

Query: 526  EGLDIHFIHVKPPQLPSGRTAKPLLMVHGWPGCFYEFYKIIPLLTDPKNHGLSDEHVFEV 705
            EGLDIHFIHVKPPQLPSGRT KPLLMVHGWPG FYEFYKIIPLLTDPK HGLSDEHVFEV
Sbjct: 121  EGLDIHFIHVKPPQLPSGRTPKPLLMVHGWPGSFYEFYKIIPLLTDPKTHGLSDEHVFEV 180

Query: 706  ICPSIPGYGFSEASSKKGFNSVATARIFYKLMLRLGFQEFYLQGGDWGALICTNMAQLVP 885
            ICPSIPGYGFSEASSKKG NSVATARIFYKLM RLGFQ+FY+QGGDWG+LICTN+AQ+VP
Sbjct: 181  ICPSIPGYGFSEASSKKGLNSVATARIFYKLMSRLGFQKFYIQGGDWGSLICTNIAQMVP 240

Query: 886  SHVKGLHLNVALVLRNVYTLTXXXXXXXXXXXXYTERDLELLYPFK-KTFYTLMRESGYM 1062
            +HVKGLHLN++ + RN+Y+LT            YTE+DLELLYPFK K FY +MRESGY+
Sbjct: 241  NHVKGLHLNMSFISRNIYSLTPLLGQRFGRFLGYTEKDLELLYPFKEKVFYNIMRESGYL 300

Query: 1063 HIQSTKPDTVGCALNDSPVGLAAYILEKFSTWTNEEFRDLEDGGLERKFSLDELLTVIML 1242
            HIQ+TKPDTVGCALNDSPVGLAAYILEKFSTWT  E+R+LEDGGLERKFSL++LLT IM+
Sbjct: 301  HIQATKPDTVGCALNDSPVGLAAYILEKFSTWTKSEYRELEDGGLERKFSLEDLLTNIMI 360

Query: 1243 YWTTGTITSSQRFYKENLGQGVMANKHEAIKVHVPTGFAAFPSEVLHCPEKWVKNKYPKL 1422
            YWTTGTI SSQRFYKENLGQGVM ++HE +KV VPTG++AFPSE+LH PEKWVK KYPKL
Sbjct: 361  YWTTGTIVSSQRFYKENLGQGVMVHRHEGMKVFVPTGYSAFPSEILHAPEKWVKVKYPKL 420

Query: 1423 ISYSYMARGGHFAAFEEPELLAQDIRKFMGLLEQQ 1527
            ISYSYM RGGHFAAFEEP+LLAQDIRKF+ L E Q
Sbjct: 421  ISYSYMERGGHFAAFEEPKLLAQDIRKFVSLAELQ 455


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 60,776,071
Number of extensions: 1690186
Number of successful extensions: 6522
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6494
Number of HSP's successfully gapped: 1
Length of query: 607
Length of database: 15,617,559
Length adjustment: 107
Effective length of query: 500
Effective length of database: 12,403,707
Effective search space: 6201853500
Effective search space used: 6201853500
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007079
         (1822 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_999520.1| epoxide hydrolase 1 [Sus scrofa].                    912   0.0  

>ref|NP_999520.1| epoxide hydrolase 1 [Sus scrofa].
          Length = 454

 Score =  912 bits (2358), Expect = 0.0
 Identities = 440/454 (96%), Positives = 441/454 (97%)
 Frame = +1

Query: 166  MWLEILLASVLGFVIYWFVSKDKEETLLLGDGWWGPGSRPAAAEDESIRPFKVETSDEEI 345
            MWLEILLASVLGFVIYWFVSKDKEETLLLGDGWWGPGSRPAAAEDESIRPFKVETSDEEI
Sbjct: 1    MWLEILLASVLGFVIYWFVSKDKEETLLLGDGWWGPGSRPAAAEDESIRPFKVETSDEEI 60

Query: 346  NDLHQRIEKFRLTPPLEDSRFHYGFNSNYLKKIISYWRNTFDWRKQVEVLNKYPHFKTKI 525
            NDLHQRIEKFRLTPPLEDSRFHYGFNSNYLKKIISYWRNTFDWRKQVEVLNKYPHFKTKI
Sbjct: 61   NDLHQRIEKFRLTPPLEDSRFHYGFNSNYLKKIISYWRNTFDWRKQVEVLNKYPHFKTKI 120

Query: 526  EGLDIHFIHVKPPQLPSGRTAKPLLMVHGWPGCFYEFYKIIPLLTDPKNHGLSDEHVFEV 705
            EGLDIHFIHVKPPQLPSGRTAKPLLMVHGWPGCFYEFYKIIPLLTDPKNHGLSDEHVFEV
Sbjct: 121  EGLDIHFIHVKPPQLPSGRTAKPLLMVHGWPGCFYEFYKIIPLLTDPKNHGLSDEHVFEV 180

Query: 706  ICPSIPGYGFSEASSKKGFNSVATARIFYKLMLRLGFQEFYLQGGDWGALICTNMAQLVP 885
            ICPSIPGYGFSEASSKKGFNSVA ARIFYKLMLRLGFQEFYLQGGDWG+LICTNMAQLVP
Sbjct: 181  ICPSIPGYGFSEASSKKGFNSVAAARIFYKLMLRLGFQEFYLQGGDWGSLICTNMAQLVP 240

Query: 886  SHVKGLHLNVALVLRNVYTLTXXXXXXXXXXXXYTERDLELLYPFKKTFYTLMRESGYMH 1065
            SHVKGLHLNVALVLRNVYTLT            YTERDLELLYPFKKTFYTLMRESGYMH
Sbjct: 241  SHVKGLHLNVALVLRNVYTLTFFLGRRLGRLFGYTERDLELLYPFKKTFYTLMRESGYMH 300

Query: 1066 IQSTKPDTVGCALNDSPVGLAAYILEKFSTWTNEEFRDLEDGGLERKFSLDELLTVIMLY 1245
            IQSTKPDTVGCALNDSPVGLAAYILEKFSTWTNEEFRDLEDGGLERKFSLDELLTVIMLY
Sbjct: 301  IQSTKPDTVGCALNDSPVGLAAYILEKFSTWTNEEFRDLEDGGLERKFSLDELLTVIMLY 360

Query: 1246 WTTGTITSSQRFYKENLGQGVMANKHEAIKVHVPTGFAAFPSEVLHCPEKWVKNKYPKLI 1425
            WTTGTITSSQRFYKENLGQGVMANKHEAIKVHVPTGFAAFPSEVLHCPEKWVKNKYPKLI
Sbjct: 361  WTTGTITSSQRFYKENLGQGVMANKHEAIKVHVPTGFAAFPSEVLHCPEKWVKNKYPKLI 420

Query: 1426 SYSYMARGGHFAAFEEPELLAQDIRKFMGLLEQQ 1527
            SYSYMARGGHFAAFEEPELLAQDIRKFMGLLEQQ
Sbjct: 421  SYSYMARGGHFAAFEEPELLAQDIRKFMGLLEQQ 454


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 45,830,492
Number of extensions: 1328315
Number of successful extensions: 5543
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5514
Number of HSP's successfully gapped: 1
Length of query: 607
Length of database: 11,343,932
Length adjustment: 105
Effective length of query: 502
Effective length of database: 8,729,747
Effective search space: 4382332994
Effective search space used: 4382332994
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007079
         (1822 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr10                                                         807   0.0  
gb|JH118670.1| Sus scrofa unplaced genomic scaffold ChrUScaf1591      137   2e-29
Sscrofa_Chr12                                                          64   3e-07

>Sscrofa_Chr10 
||          Length = 79102373

 Score =  807 bits (407), Expect = 0.0
 Identities = 465/479 (97%), Gaps = 4/479 (0%)
 Strand = Plus / Minus

                                                                            
Query: 1329     gatcaaggtccacgtgcccaccggctttgctgccttcccttccgaggtgttacactgccc 1388
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16017065 gatcaaggtccacgtgcccaccggctttgctgccttcccttccgaggtgttacactgccc 16017006

                                                                            
Query: 1389     agaaaagtgggtgaagaacaagtacccaaaactcatctcctattcctacatggcccgtgg 1448
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16017005 agaaaagtgggtgaagaacaagtacccaaaactcatctcctattcctacatggcccgtgg 16016946

                                                                            
Query: 1449     gggccactttgccgcctttgaggagccggagctgctggcccaggacatccgcaagttcat 1508
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16016945 gggccactttgccgcctttgaggagccggagctgctggcccaggacatccgcaagttcat 16016886

                                                                            
Query: 1509     ggggctgttggagcagcagtgaccacagcgggtggggggactggctgtcacctcataggc 1568
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16016885 ggggctgttggagcagcagtgaccacagcgggtggggggactggctgtcacctcataggc 16016826

                                                                            
Query: 1569     atcccctgctcccaagtggtaggctccctcccgatccctgtccttttcccccgaagctcc 1628
                ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 16016825 atcccctgctcccaagtggtaggctccctcccgatccctgtccttttccccggaagctcc 16016766

                                                                            
Query: 1629     cggcaaaagtggggctggcagggtggtggcttcccaggcttctgtggagacccccca-tt 1687
                ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct: 16016765 cggcagaagtggggctggcagggtggtggcttcccaggcttctgtggagacgccccattt 16016706

                                                                            
Query: 1688     tcctaggaacacactggcttccgtccctgccacctgggacccccaggcctgcccctcagc 1747
                |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct: 16016705 tcctaggaacacactggcttccgtccctgccagctggga-ccccaggcctgcccctcagc 16016647

                                                                           
Query: 1748     aaatgcttcccacacactttgttaaacaaaatgactttaatgaaaaatgaattttcctt 1806
                | ||||| ||||||||| ||||||| ||| |||||||| |||| ||||| |||||||||
Sbjct: 16016646 atatgctccccacacac-ttgttaagcaacatgactttgatgataaatg-attttcctt 16016590



 Score =  408 bits (206), Expect = e-111
 Identities = 209/210 (99%)
 Strand = Plus / Minus

                                                                            
Query: 885      cagccacgtgaaaggcctgcacttgaacgtagccctggttttaagaaatgtctacaccct 944
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16021644 cagccacgtgaaaggcctgcacttgaacgtagccctggttttaagaaatgtctacaccct 16021585

                                                                            
Query: 945      gacctttttcctgggacggcgtttggggaggctttttggctacactgagagggacctcga 1004
                ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 16021584 gacctttttcctgggacggcgtttgggaaggctttttggctacactgagagggacctcga 16021525

                                                                            
Query: 1005     gctgctttaccccttcaagaagaccttctacaccttgatgagggagagcggctacatgca 1064
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16021524 gctgctttaccccttcaagaagaccttctacaccttgatgagggagagcggctacatgca 16021465

                                              
Query: 1065     catccagagcaccaagccggacaccgtggg 1094
                ||||||||||||||||||||||||||||||
Sbjct: 16021464 catccagagcaccaagccggacaccgtggg 16021435



 Score =  408 bits (206), Expect = e-111
 Identities = 223/231 (96%)
 Strand = Plus / Minus

                                                                            
Query: 528      agggctggacatccacttcatccacgtgaagnnnnnnnagctgccctccggccgcaccgc 587
                |||||||||||||||||||||||||||||||       ||||||||||||||||||||||
Sbjct: 16023141 agggctggacatccacttcatccacgtgaagcccccccagctgccctccggccgcaccgc 16023082

                                                                            
Query: 588      gaagcccttgctgatggtgcacggctggcctggctgcttctacgagttttataagatcat 647
                ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 16023081 gaagcccttgctgatggtgcatggctggcctggctgcttctacgagttttataagatcat 16023022

                                                                            
Query: 648      cccgctcctgacggaccccaagaaccacggcctgagcgatgagcatgtgttcgaagtcat 707
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16023021 cccgctcctgacggaccccaagaaccacggcctgagcgatgagcatgtgttcgaagtcat 16022962

                                                                   
Query: 708      ctgtccatccattcctggctacggcttctcagaggcatcctctaagaaagg 758
                |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16022961 ctgtccatccattcctggctacggcttctcagaggcatcctctaagaaagg 16022911



 Score =  381 bits (192), Expect = e-102
 Identities = 192/192 (100%)
 Strand = Plus / Minus

                                                                            
Query: 158      caggagtcatgtggctggaaatactcctcgcctctgtgctgggctttgtcatctactggt 217
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16032200 caggagtcatgtggctggaaatactcctcgcctctgtgctgggctttgtcatctactggt 16032141

                                                                            
Query: 218      tcgtctccaaggacaaggaggagaccttgctccttggagatggctggtgggggcccggat 277
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16032140 tcgtctccaaggacaaggaggagaccttgctccttggagatggctggtgggggcccggat 16032081

                                                                            
Query: 278      caaggcccgcggctgcggaggacgagagcatccggccattcaaggtggagacgtcagacg 337
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16032080 caaggcccgcggctgcggaggacgagagcatccggccattcaaggtggagacgtcagacg 16032021

                            
Query: 338      aggagatcaacg 349
                ||||||||||||
Sbjct: 16032020 aggagatcaacg 16032009



 Score =  361 bits (182), Expect = 9e-97
 Identities = 182/182 (100%)
 Strand = Plus / Minus

                                                                            
Query: 349      gacttacaccagaggatcgagaagtttcgcttaaccccgcctttggaggacagccgcttc 408
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16029503 gacttacaccagaggatcgagaagtttcgcttaaccccgcctttggaggacagccgcttc 16029444

                                                                            
Query: 409      cactacgggttcaactccaactatctgaagaaaatcatctcctactggcggaacacattc 468
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16029443 cactacgggttcaactccaactatctgaagaaaatcatctcctactggcggaacacattc 16029384

                                                                            
Query: 469      gactggaggaagcaggtggaggttctcaacaagtaccctcacttcaagaccaagattgaa 528
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16029383 gactggaggaagcaggtggaggttctcaacaagtaccctcacttcaagaccaagattgaa 16029324

                  
Query: 529      gg 530
                ||
Sbjct: 16029323 gg 16029322



 Score =  311 bits (157), Expect = 7e-82
 Identities = 160/161 (99%)
 Strand = Plus / Minus

                                                                            
Query: 1        cccatggacccgccgctcccgagagccaggaggcggagggccttgtttattattttatat 60
                ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 16036303 cccatggacccgccgctcccgagagccaggaggcggagggcattgtttattattttatat 16036244

                                                                            
Query: 61       tttggaagatttgtgcaggcttgagcgacacactctggcagacggtcgcggcttccgtgc 120
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16036243 tttggaagatttgtgcaggcttgagcgacacactctggcagacggtcgcggcttccgtgc 16036184

                                                         
Query: 121      agtcgtggctcgccttcgcaccgagggtccccaagttcagg 161
                |||||||||||||||||||||||||||||||||||||||||
Sbjct: 16036183 agtcgtggctcgccttcgcaccgagggtccccaagttcagg 16036143



 Score =  256 bits (129), Expect = 4e-65
 Identities = 129/129 (100%)
 Strand = Plus / Minus

                                                                            
Query: 1201     aggaagttctccctggatgagctgctgacagtcatcatgctctactggacaacgggcacc 1260
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16018042 aggaagttctccctggatgagctgctgacagtcatcatgctctactggacaacgggcacc 16017983

                                                                            
Query: 1261     atcacctcctcccagcgcttctacaaggagaacctaggacagggcgtgatggccaataag 1320
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16017982 atcacctcctcccagcgcttctacaaggagaacctaggacagggcgtgatggccaataag 16017923

                         
Query: 1321     catgaggcg 1329
                |||||||||
Sbjct: 16017922 catgaggcg 16017914



 Score =  238 bits (120), Expect = 9e-60
 Identities = 129/132 (97%)
 Strand = Plus / Minus

                                                                            
Query: 756      aggcttcaactcagtggccactgccaggatcttttacaagctgatgctgcggctgggctt 815
                ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||
Sbjct: 16022289 aggcttcaactcagtggctgctgccaggatcttttacaagctgatgctgcggctgggctt 16022230

                                                                            
Query: 816      ccaggaattctaccttcaaggcggagactggggggccctgatctgcaccaacatggccca 875
                |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 16022229 ccaggaattctaccttcaaggcggagactgggggtccctgatctgcaccaacatggccca 16022170

                            
Query: 876      gctggtgcccag 887
                ||||||||||||
Sbjct: 16022169 gctggtgcccag 16022158



 Score =  220 bits (111), Expect = 2e-54
 Identities = 111/111 (100%)
 Strand = Plus / Minus

                                                                            
Query: 1093     ggctgcgccctgaatgactcccccgtgggcctggctgcctacatcctagagaagttttct 1152
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16019440 ggctgcgccctgaatgactcccccgtgggcctggctgcctacatcctagagaagttttct 16019381

                                                                   
Query: 1153     acctggaccaacgaagagttccgggacctggaggatggcggcctggagagg 1203
                |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16019380 acctggaccaacgaagagttccgggacctggaggatggcggcctggagagg 16019330


>gb|JH118670.1| Sus scrofa unplaced genomic scaffold ChrUScaf1591
          Length = 183348

 Score =  137 bits (69), Expect = 2e-29
 Identities = 78/81 (96%)
 Strand = Plus / Minus

                                                                          
Query: 1347   caccggctttgctgccttcccttccgaggtgttacactgcccagaaaagtgggtgaagaa 1406
              |||||||||||||||||||||||| ||||||||||||||||| ||| |||||||||||||
Sbjct: 101897 caccggctttgctgccttcccttcagaggtgttacactgccctgaacagtgggtgaagaa 101838

                                   
Query: 1407   caagtacccaaaactcatctc 1427
              |||||||||||||||||||||
Sbjct: 101837 caagtacccaaaactcatctc 101817


>Sscrofa_Chr12 
||          Length = 63588571

 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 116/144 (80%)
 Strand = Plus / Plus

                                                                            
Query: 1178     acctggaggatggcggcctggagaggaagttctccctggatgagctgctgacagtcatca 1237
                ||||||||||| | | |||||| || |||| |||||||||  | |||| ||  | || ||
Sbjct: 29973670 acctggaggatagagacctggatagcaagtactccctggaaaatctgcagaggggcacca 29973729

                                                                            
Query: 1238     tgctctactggacaacgggcaccatcacctcctcccagcgcttctacaaggagaacctag 1297
                | |||||||||| || ||| |||||||| ||| ||| | | |||||||||||||| || |
Sbjct: 29973730 tactctactggaaaatgggaaccatcacttccaccctgtgtttctacaaggagaaactgg 29973789

                                        
Query: 1298     gacagggcgtgatggccaataagc 1321
                | |||||| | |||||||||||||
Sbjct: 29973790 ggcagggcataatggccaataagc 29973813



 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 116/144 (80%)
 Strand = Plus / Plus

                                                                            
Query: 1178     acctggaggatggcggcctggagaggaagttctccctggatgagctgctgacagtcatca 1237
                ||||||||||| | | |||||| || |||| |||||||||  | |||| ||  | || ||
Sbjct: 30105437 acctggaggatagagacctggatagcaagtactccctggaaaatctgcagaggggcacca 30105496

                                                                            
Query: 1238     tgctctactggacaacgggcaccatcacctcctcccagcgcttctacaaggagaacctag 1297
                | |||||||||| || ||| |||||||| ||| ||| | | |||||||||||||| || |
Sbjct: 30105497 tactctactggaaaatgggaaccatcacttccaccctgtgtttctacaaggagaaactgg 30105556

                                        
Query: 1298     gacagggcgtgatggccaataagc 1321
                | |||||| | |||||||||||||
Sbjct: 30105557 ggcagggcataatggccaataagc 30105580


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 50,066,933
Number of extensions: 446
Number of successful extensions: 446
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 443
Number of HSP's successfully gapped: 12
Length of query: 1822
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1800
Effective length of database: 2,808,408,574
Effective search space: 5055135433200
Effective search space used: 5055135433200
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)