Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007192
(2267 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001193348.1| DDB1- and CUL4-associated factor 8 [Bos taur... 1043 0.0
Alignment gi|NP_001178158.1| DDB1- and CUL4-associated factor 6 [Bos taur... 143 6e-34
Alignment gi|XP_002685864.1| PREDICTED: DDB1 and CUL4 associated factor 6... 143 6e-34
Alignment gi|XP_002685863.1| PREDICTED: DDB1 and CUL4 associated factor 6... 143 6e-34
Alignment gi|XP_001254045.1| PREDICTED: IQ motif and WD repeats 1 isoform... 143 6e-34
Alignment gi|NP_001192327.1| WD and tetratricopeptide repeats protein 1 [... 125 1e-28
Alignment gi|XP_002691087.1| PREDICTED: abnormal cell LINeage family memb... 72 2e-12
Alignment gi|XP_001253728.2| PREDICTED: abnormal cell LINeage family memb... 72 2e-12
Alignment gi|NP_001098945.1| WD repeat-containing protein 5 [Bos taurus]. 70 1e-11
Alignment gi|NP_001098929.1| WD repeat-containing protein 82 [Bos taurus]. 62 2e-09
>ref|NP_001193348.1| DDB1- and CUL4-associated factor 8 [Bos taurus].
Length = 591
Score = 1043 bits (2698), Expect = 0.0
Identities = 521/596 (87%), Positives = 525/596 (88%)
Frame = +3
Query: 333 MSSKGSSTDGKTDLANGSLSSSPEEMSGAEEGRETSSGIEVEASDLSLSLTGDDGGPNRT 512
MSSKGSSTDG+TDLANGSLSSSPEEMSGAEEGRETSSGIEVEASDLSLSLTGDDGGPNRT
Sbjct: 1 MSSKGSSTDGRTDLANGSLSSSPEEMSGAEEGRETSSGIEVEASDLSLSLTGDDGGPNRT 60
Query: 513 STESRGTDTESSGEDKDSDSMEDTGHYSINDENQVHDPSXXXXXXXXXXXXXXXXXXXXX 692
STESRGTDTESSGEDKDSDSMEDTGHYS+NDE+QVHD S
Sbjct: 61 STESRGTDTESSGEDKDSDSMEDTGHYSVNDESQVHDRSEEEEEEEHPRRRVQRKR---- 116
Query: 693 XANRDQDSSDDERALEDWVASETSALPRPRWQALPALRERELGSSARFVYEACGARVFVQ 872
ANRDQDSSDDERALEDWV+SETSALPRPRWQALPALRERELGSSARFVYEACGARVFVQ
Sbjct: 117 -ANRDQDSSDDERALEDWVSSETSALPRPRWQALPALRERELGSSARFVYEACGARVFVQ 175
Query: 873 RFRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDLKVVVWDWVRRQPVLDFESGHKSNVFQ 1052
RFRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDLKVVVWDWVRRQPVLDFESGHKSNVFQ
Sbjct: 176 RFRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDLKVVVWDWVRRQPVLDFESGHKSNVFQ 235
Query: 1053 AKFLPNSGDSTLAMCARDGQVRVAELSATQCCKNTKRVAQHKGASHKLALEPDSPCTFLS 1232
AKFLPNSGDSTLAMCARDGQVRVAELSATQCCKNTKRVAQHKGASHKLALEPDSPCTFLS
Sbjct: 236 AKFLPNSGDSTLAMCARDGQVRVAELSATQCCKNTKRVAQHKGASHKLALEPDSPCTFLS 295
Query: 1233 AGEDAVVFTIDLRQDRPASXXXXXXXXXXXXGLYTIYVNPANTHQFAVGGRDQFVRIYDQ 1412
AGEDAVVFTIDLRQDRPAS GLYTIYVNPANTHQFAVGGRDQFVRIYDQ
Sbjct: 296 AGEDAVVFTIDLRQDRPASKLVVTKEKEKKVGLYTIYVNPANTHQFAVGGRDQFVRIYDQ 355
Query: 1413 RKIDENENNGVLKKFCPHHLVNSESKANITCLVYSHDGTELLASYNDEDIYLFNSSHSDG 1592
RKIDENENNGVLKKFCPHHLVNSESKANITCLVYSHDGTELLASYNDEDIYLFNSSHSDG
Sbjct: 356 RKIDENENNGVLKKFCPHHLVNSESKANITCLVYSHDGTELLASYNDEDIYLFNSSHSDG 415
Query: 1593 AQYIKRYKGHRNNATVKGVNFYGPKSEFVVSGSDCGHIFLWEKSSCQIIQFMEGDKGGVV 1772
AQYIKRYKGHRNNATVKGVNFYGPKSEFVVSGSDCGHIFLWEKSSCQIIQFMEGDKGGVV
Sbjct: 416 AQYIKRYKGHRNNATVKGVNFYGPKSEFVVSGSDCGHIFLWEKSSCQIIQFMEGDKGGVV 475
Query: 1773 NCLEPHPHLPVLATSGLDHDVKIWAPTAETSTELTGLKDVIKKNKRERDEDSLHHTDLFD 1952
NCLEPHPHLPVLATSGLDHDVKIWAPTAETSTELTGLKDVIKKNKRERDEDSLHHTDLFD
Sbjct: 476 NCLEPHPHLPVLATSGLDHDVKIWAPTAETSTELTGLKDVIKKNKRERDEDSLHHTDLFD 535
Query: 1953 SHMLWFLMXXXXXXXXXXXXXEPGVGXXXXXXXXXXXXXXXXXXXXXXXRVQCMPS 2120
SHMLWFLM EPGVG RVQCMPS
Sbjct: 536 SHMLWFLMHHLRQRRHHRRWREPGVGATDADSDESPSSSDTSDEEEGPDRVQCMPS 591
>ref|NP_001178158.1| DDB1- and CUL4-associated factor 6 [Bos taurus].
Length = 877
Score = 143 bits (361), Expect = 6e-34
Identities = 89/281 (31%), Positives = 138/281 (49%), Gaps = 12/281 (4%)
Frame = +3
Query: 801 LRERELG--SSARFVYEACGARVFVQRFRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDL 974
+R+R LG +R G R F+QR +L+ L H GCVNT+ +N+ G ++ SGSDD
Sbjct: 14 VRKRSLGLEDPSRLRSRYLGRREFIQRLKLEATLNVHDGCVNTICWNETGEYILSGSDDT 73
Query: 975 KVVVWDWVRRQPVLDFESGHKSNVFQAKFLPNSGDSTLAMCARDGQVRVAELSATQCCKN 1154
K+V+ + R+ + SGH++N+F AKFLP + D + C+ DG + +
Sbjct: 74 KLVISNPYSRKVLTTIRSGHRANIFSAKFLPCTNDKQIVSCSGDGVIFYTNVEQDAETNR 133
Query: 1155 TKRVAQHKGASHKLALEPDSPCTFLSAGEDAVV--FTIDLRQDRPASXXXXXXXXXXXXG 1328
+ H G ++++ P+ P TFLS GED V F ++
Sbjct: 134 QCQFTCHYGTTYEIMTVPNDPYTFLSCGEDGTVRWFDTRIKTSCTKEDCKDDILINCRRA 193
Query: 1329 LYTIYVNPANTHQFAVGGRDQFVRIYDQRKIDENE--------NNGVLKKFCPHHLVNSE 1484
++ + P + AVG D VRIYD+R + G++ +F P HL N
Sbjct: 194 ATSVAICPPIPYYLAVGCSDSSVRIYDRRMLGTRATGNYAGRGTTGMVARFIPSHLNNKS 253
Query: 1485 SKANITCLVYSHDGTELLASYNDEDIYLFNSSHSDGAQYIK 1607
+ +T L YS DG E+L SY+ + IYLF+ D A+ +K
Sbjct: 254 CR--VTSLCYSEDGQEILVSYSSDYIYLFDPK-DDTARELK 291
Score = 102 bits (254), Expect = 1e-21
Identities = 51/106 (48%), Positives = 74/106 (69%), Gaps = 2/106 (1%)
Frame = +3
Query: 1611 YKGHRNNAT-VKGVNFYGPKSEFVVSGSDCGHIFLWEKSSCQIIQFMEGDKGGVVNCLEP 1787
YKGHRN+ T +K NF+G + FV+SGSDCGHIF+W++ + + + +E D VVNCL+P
Sbjct: 730 YKGHRNSRTMIKEANFWG--ANFVMSGSDCGHIFIWDRHTAEHLMLLEADNH-VVNCLQP 786
Query: 1788 HPHLPVLATSGLDHDVKIWAPTAETSTELTGLKD-VIKKNKRERDE 1922
HP P+LA+SG+D+D+KIW+P E+ L D VI +N+ +E
Sbjct: 787 HPFDPILASSGIDYDIKIWSPLEESRIFNRKLADEVITRNELMLEE 832
>ref|XP_002685864.1| PREDICTED: DDB1 and CUL4 associated factor 6 isoform 2 [Bos taurus].
Length = 857
Score = 143 bits (361), Expect = 6e-34
Identities = 89/281 (31%), Positives = 138/281 (49%), Gaps = 12/281 (4%)
Frame = +3
Query: 801 LRERELG--SSARFVYEACGARVFVQRFRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDL 974
+R+R LG +R G R F+QR +L+ L H GCVNT+ +N+ G ++ SGSDD
Sbjct: 14 VRKRSLGLEDPSRLRSRYLGRREFIQRLKLEATLNVHDGCVNTICWNETGEYILSGSDDT 73
Query: 975 KVVVWDWVRRQPVLDFESGHKSNVFQAKFLPNSGDSTLAMCARDGQVRVAELSATQCCKN 1154
K+V+ + R+ + SGH++N+F AKFLP + D + C+ DG + +
Sbjct: 74 KLVISNPYSRKVLTTIRSGHRANIFSAKFLPCTNDKQIVSCSGDGVIFYTNVEQDAETNR 133
Query: 1155 TKRVAQHKGASHKLALEPDSPCTFLSAGEDAVV--FTIDLRQDRPASXXXXXXXXXXXXG 1328
+ H G ++++ P+ P TFLS GED V F ++
Sbjct: 134 QCQFTCHYGTTYEIMTVPNDPYTFLSCGEDGTVRWFDTRIKTSCTKEDCKDDILINCRRA 193
Query: 1329 LYTIYVNPANTHQFAVGGRDQFVRIYDQRKIDENE--------NNGVLKKFCPHHLVNSE 1484
++ + P + AVG D VRIYD+R + G++ +F P HL N
Sbjct: 194 ATSVAICPPIPYYLAVGCSDSSVRIYDRRMLGTRATGNYAGRGTTGMVARFIPSHLNNKS 253
Query: 1485 SKANITCLVYSHDGTELLASYNDEDIYLFNSSHSDGAQYIK 1607
+ +T L YS DG E+L SY+ + IYLF+ D A+ +K
Sbjct: 254 CR--VTSLCYSEDGQEILVSYSSDYIYLFDPK-DDTARELK 291
Score = 102 bits (254), Expect = 1e-21
Identities = 51/106 (48%), Positives = 74/106 (69%), Gaps = 2/106 (1%)
Frame = +3
Query: 1611 YKGHRNNAT-VKGVNFYGPKSEFVVSGSDCGHIFLWEKSSCQIIQFMEGDKGGVVNCLEP 1787
YKGHRN+ T +K NF+G + FV+SGSDCGHIF+W++ + + + +E D VVNCL+P
Sbjct: 710 YKGHRNSRTMIKEANFWG--ANFVMSGSDCGHIFIWDRHTAEHLMLLEADNH-VVNCLQP 766
Query: 1788 HPHLPVLATSGLDHDVKIWAPTAETSTELTGLKD-VIKKNKRERDE 1922
HP P+LA+SG+D+D+KIW+P E+ L D VI +N+ +E
Sbjct: 767 HPFDPILASSGIDYDIKIWSPLEESRIFNRKLADEVITRNELMLEE 812
>ref|XP_002685863.1| PREDICTED: DDB1 and CUL4 associated factor 6 isoform 1 [Bos taurus].
Length = 877
Score = 143 bits (361), Expect = 6e-34
Identities = 89/281 (31%), Positives = 138/281 (49%), Gaps = 12/281 (4%)
Frame = +3
Query: 801 LRERELG--SSARFVYEACGARVFVQRFRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDL 974
+R+R LG +R G R F+QR +L+ L H GCVNT+ +N+ G ++ SGSDD
Sbjct: 14 VRKRSLGLEDPSRLRSRYLGRREFIQRLKLEATLNVHDGCVNTICWNETGEYILSGSDDT 73
Query: 975 KVVVWDWVRRQPVLDFESGHKSNVFQAKFLPNSGDSTLAMCARDGQVRVAELSATQCCKN 1154
K+V+ + R+ + SGH++N+F AKFLP + D + C+ DG + +
Sbjct: 74 KLVISNPYSRKVLTTIRSGHRANIFSAKFLPCTNDKQIVSCSGDGVIFYTNVEQDAETNR 133
Query: 1155 TKRVAQHKGASHKLALEPDSPCTFLSAGEDAVV--FTIDLRQDRPASXXXXXXXXXXXXG 1328
+ H G ++++ P+ P TFLS GED V F ++
Sbjct: 134 QCQFTCHYGTTYEIMTVPNDPYTFLSCGEDGTVRWFDTRIKTSCTKEDCKDDILINCRRA 193
Query: 1329 LYTIYVNPANTHQFAVGGRDQFVRIYDQRKIDENE--------NNGVLKKFCPHHLVNSE 1484
++ + P + AVG D VRIYD+R + G++ +F P HL N
Sbjct: 194 ATSVAICPPIPYYLAVGCSDSSVRIYDRRMLGTRATGNYAGRGTTGMVARFIPSHLNNKS 253
Query: 1485 SKANITCLVYSHDGTELLASYNDEDIYLFNSSHSDGAQYIK 1607
+ +T L YS DG E+L SY+ + IYLF+ D A+ +K
Sbjct: 254 CR--VTSLCYSEDGQEILVSYSSDYIYLFDPK-DDTARELK 291
Score = 102 bits (254), Expect = 1e-21
Identities = 51/106 (48%), Positives = 74/106 (69%), Gaps = 2/106 (1%)
Frame = +3
Query: 1611 YKGHRNNAT-VKGVNFYGPKSEFVVSGSDCGHIFLWEKSSCQIIQFMEGDKGGVVNCLEP 1787
YKGHRN+ T +K NF+G + FV+SGSDCGHIF+W++ + + + +E D VVNCL+P
Sbjct: 730 YKGHRNSRTMIKEANFWG--ANFVMSGSDCGHIFIWDRHTAEHLMLLEADNH-VVNCLQP 786
Query: 1788 HPHLPVLATSGLDHDVKIWAPTAETSTELTGLKD-VIKKNKRERDE 1922
HP P+LA+SG+D+D+KIW+P E+ L D VI +N+ +E
Sbjct: 787 HPFDPILASSGIDYDIKIWSPLEESRIFNRKLADEVITRNELMLEE 832
>ref|XP_001254045.1| PREDICTED: IQ motif and WD repeats 1 isoform 2 [Bos taurus].
Length = 857
Score = 143 bits (361), Expect = 6e-34
Identities = 89/281 (31%), Positives = 138/281 (49%), Gaps = 12/281 (4%)
Frame = +3
Query: 801 LRERELG--SSARFVYEACGARVFVQRFRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDL 974
+R+R LG +R G R F+QR +L+ L H GCVNT+ +N+ G ++ SGSDD
Sbjct: 14 VRKRSLGLEDPSRLRSRYLGRREFIQRLKLEATLNVHDGCVNTICWNETGEYILSGSDDT 73
Query: 975 KVVVWDWVRRQPVLDFESGHKSNVFQAKFLPNSGDSTLAMCARDGQVRVAELSATQCCKN 1154
K+V+ + R+ + SGH++N+F AKFLP + D + C+ DG + +
Sbjct: 74 KLVISNPYSRKVLTTIRSGHRANIFSAKFLPCTNDKQIVSCSGDGVIFYTNVEQDAETNR 133
Query: 1155 TKRVAQHKGASHKLALEPDSPCTFLSAGEDAVV--FTIDLRQDRPASXXXXXXXXXXXXG 1328
+ H G ++++ P+ P TFLS GED V F ++
Sbjct: 134 QCQFTCHYGTTYEIMTVPNDPYTFLSCGEDGTVRWFDTRIKTSCTKEDCKDDILINCRRA 193
Query: 1329 LYTIYVNPANTHQFAVGGRDQFVRIYDQRKIDENE--------NNGVLKKFCPHHLVNSE 1484
++ + P + AVG D VRIYD+R + G++ +F P HL N
Sbjct: 194 ATSVAICPPIPYYLAVGCSDSSVRIYDRRMLGTRATGNYAGRGTTGMVARFIPSHLNNKS 253
Query: 1485 SKANITCLVYSHDGTELLASYNDEDIYLFNSSHSDGAQYIK 1607
+ +T L YS DG E+L SY+ + IYLF+ D A+ +K
Sbjct: 254 CR--VTSLCYSEDGQEILVSYSSDYIYLFDPK-DDTARELK 291
Score = 102 bits (254), Expect = 1e-21
Identities = 51/106 (48%), Positives = 74/106 (69%), Gaps = 2/106 (1%)
Frame = +3
Query: 1611 YKGHRNNAT-VKGVNFYGPKSEFVVSGSDCGHIFLWEKSSCQIIQFMEGDKGGVVNCLEP 1787
YKGHRN+ T +K NF+G + FV+SGSDCGHIF+W++ + + + +E D VVNCL+P
Sbjct: 710 YKGHRNSRTMIKEANFWG--ANFVMSGSDCGHIFIWDRHTAEHLMLLEADNH-VVNCLQP 766
Query: 1788 HPHLPVLATSGLDHDVKIWAPTAETSTELTGLKD-VIKKNKRERDE 1922
HP P+LA+SG+D+D+KIW+P E+ L D VI +N+ +E
Sbjct: 767 HPFDPILASSGIDYDIKIWSPLEESRIFNRKLADEVITRNELMLEE 812
>ref|NP_001192327.1| WD and tetratricopeptide repeats protein 1 [Bos taurus].
Length = 678
Score = 125 bits (315), Expect = 1e-28
Identities = 82/270 (30%), Positives = 129/270 (47%), Gaps = 30/270 (11%)
Frame = +3
Query: 864 FVQRFRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDLKVVVWDWVRRQPVLDFESGHKSN 1043
F++R L+ L+GH+GCVN L +N++G LASGSDD +VWD + + +L +GH +N
Sbjct: 33 FIRRLGLEAELQGHSGCVNCLEWNEKGDLLASGSDDQHTIVWDPLHHKKLLSMHTGHTAN 92
Query: 1044 VFQAKFLPNSGDSTLAMCARDGQVRVAELSATQCCKNTKRVAQHKGASHKLALEPDSPCT 1223
+F KFLP++GD L A D +V V +L+ + H ++A P P T
Sbjct: 93 IFSVKFLPHAGDRILITGAADSKVHVHDLTVKE---TIHMFGDHTNRVKRIATAPMWPNT 149
Query: 1224 FLSAGEDAVVFTIDLRQDRPASXXXXXXXXXXXXGLYT--IYVNPANTHQFAVGGRDQFV 1397
F SA ED ++ DLR++ S + + VNP + + AVG FV
Sbjct: 150 FWSAAEDGLIRQYDLRENSKHSEVLIDLTEYCGQLVEAKCLTVNPQDNNCLAVGASGPFV 209
Query: 1398 RIYDQRKIDENEN---------------------NGVLKKFCPHHL------VNSESKAN 1496
R+YD R I + +G + + HL N+ +
Sbjct: 210 RLYDIRMIHNHRKSMKQSPSAGVHTFCDRQKPLPDGAAQYYVAGHLPVKLPDYNNRLRVL 269
Query: 1497 I-TCLVYSHDGTELLASYNDEDIYLFNSSH 1583
+ T + +S +GTELL + E +YLF+ ++
Sbjct: 270 VATYVAFSPNGTELLVNMGGEQVYLFDLTY 299
Score = 92.8 bits (229), Expect = 1e-18
Identities = 51/136 (37%), Positives = 82/136 (60%), Gaps = 6/136 (4%)
Frame = +3
Query: 1542 SYNDEDIYLFNSSHSDGAQYIKRYKGHRNNAT-VKGVNFYGPKSEFVVSGSDCGHIFLWE 1718
S +++++ L S+ Y RY GH N T +K NF+G ++++VSGSD G F+WE
Sbjct: 512 SISEDEMVLRERSYD----YQFRYCGHCNTTTDIKEANFFGSNAQYIVSGSDDGSFFVWE 567
Query: 1719 KSSCQIIQFMEGDKGGVVNCLEPHPHLPVLATSGLDHDVKIWAPTAETSTELTG-----L 1883
K + +++ ++GD+ +VNCL+PHP LATSG+D V++W P E S +LTG +
Sbjct: 568 KETTNLVRVLQGDE-SIVNCLQPHPSYCFLATSGIDPVVRLWNPRPE-SEDLTGRVVEDM 625
Query: 1884 KDVIKKNKRERDEDSL 1931
+ + N+R + D L
Sbjct: 626 EGASQANQRRMNADPL 641
>ref|XP_002691087.1| PREDICTED: abnormal cell LINeage family member (lin-53)-like [Bos
taurus].
Length = 932
Score = 72.4 bits (176), Expect = 2e-12
Identities = 73/322 (22%), Positives = 145/322 (45%), Gaps = 19/322 (5%)
Frame = +3
Query: 942 GTW-----LASGSDDLKVVVWDWVR----RQPVLDFESGHKSNVFQAKFLPNSGDSTLAM 1094
G+W L DD +V++W + R + + H SN+F F NSG++ +
Sbjct: 46 GSWQSIYRLRERGDDRRVLLWHMEQAIHSRVKPIQLKGEHHSNIFCLAF--NSGNTKVFS 103
Query: 1095 CARDGQVRVAELSATQCCKNTKRVAQHKGASHKLALEPDSPCTFLSAGEDAVVFTIDLRQ 1274
D QV + ++ +++ T V H+ A + L++ P + F S+ +D V D+R+
Sbjct: 104 GGNDEQVILHDVESSE----TLDVFAHEDAVYGLSVSPVNDNIFASSSDDGRVLIWDIRE 159
Query: 1275 DRPASXXXXXXXXXXXXGLYTIYVNPANTHQFAVGGRDQFVRIYDQRKIDENENNGVLKK 1454
+ +++ NP A + V ++D RK + L +
Sbjct: 160 ---SPHGEPFCLANYPSAFHSVMFNPVEPRLLATANSKEGVGLWDIRKPQSS-----LLR 211
Query: 1455 FCPHHLVNSESKANITCLVYSHDGTELLASYNDEDIYLFNSSHSDGAQYIKRYKGHRNNA 1634
+ + + S ++ +GT+LLA L++ HS + +G+ N+
Sbjct: 212 YGGNLSLQSAMSVR-----FNSNGTQLLALRRRLPPVLYDI-HSRLPVFQFDNQGYFNSC 265
Query: 1635 TVKGVNFYGPKSEFVVSGSDCGHIFLW----EKSSCQIIQFMEGD----KG--GVVNCLE 1784
T+K F G + ++++SGSD ++++W + + I + + G KG +VN +
Sbjct: 266 TMKSCCFAGDRDQYILSGSDDFNLYMWRIPADPEAGGIGRVVNGAFMVLKGHRSIVNQVR 325
Query: 1785 PHPHLPVLATSGLDHDVKIWAP 1850
+PH ++ +SG++ +KIW+P
Sbjct: 326 FNPHTYMICSSGVEKIIKIWSP 347
>ref|XP_001253728.2| PREDICTED: abnormal cell LINeage family member (lin-53)-like [Bos
taurus].
Length = 932
Score = 72.4 bits (176), Expect = 2e-12
Identities = 73/322 (22%), Positives = 145/322 (45%), Gaps = 19/322 (5%)
Frame = +3
Query: 942 GTW-----LASGSDDLKVVVWDWVR----RQPVLDFESGHKSNVFQAKFLPNSGDSTLAM 1094
G+W L DD +V++W + R + + H SN+F F NSG++ +
Sbjct: 46 GSWQSIYRLRERGDDRRVLLWHMEQAIHSRVKPIQLKGEHHSNIFCLAF--NSGNTKVFS 103
Query: 1095 CARDGQVRVAELSATQCCKNTKRVAQHKGASHKLALEPDSPCTFLSAGEDAVVFTIDLRQ 1274
D QV + ++ +++ T V H+ A + L++ P + F S+ +D V D+R+
Sbjct: 104 GGNDEQVILHDVESSE----TLDVFAHEDAVYGLSVSPVNDNIFASSSDDGRVLIWDIRE 159
Query: 1275 DRPASXXXXXXXXXXXXGLYTIYVNPANTHQFAVGGRDQFVRIYDQRKIDENENNGVLKK 1454
+ +++ NP A + V ++D RK + L +
Sbjct: 160 ---SPHGEPFCLANYPSAFHSVMFNPVEPRLLATANSKEGVGLWDIRKPQSS-----LLR 211
Query: 1455 FCPHHLVNSESKANITCLVYSHDGTELLASYNDEDIYLFNSSHSDGAQYIKRYKGHRNNA 1634
+ + + S ++ +GT+LLA L++ HS + +G+ N+
Sbjct: 212 YGGNLSLQSAMSVR-----FNSNGTQLLALRRRLPPVLYDI-HSRLPVFQFDNQGYFNSC 265
Query: 1635 TVKGVNFYGPKSEFVVSGSDCGHIFLW----EKSSCQIIQFMEGD----KG--GVVNCLE 1784
T+K F G + ++++SGSD ++++W + + I + + G KG +VN +
Sbjct: 266 TMKSCCFAGDRDQYILSGSDDFNLYMWRIPADPEAGGIGRVVNGAFMVLKGHRSIVNQVR 325
Query: 1785 PHPHLPVLATSGLDHDVKIWAP 1850
+PH ++ +SG++ +KIW+P
Sbjct: 326 FNPHTYMICSSGVEKIIKIWSP 347
>ref|NP_001098945.1| WD repeat-containing protein 5 [Bos taurus].
Length = 334
Score = 69.7 bits (169), Expect = 1e-11
Identities = 76/333 (22%), Positives = 142/333 (42%), Gaps = 10/333 (3%)
Frame = +3
Query: 876 FRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDLKVVVWDWVRRQPVLDFE---SGHKSNV 1046
+ L+ L GHT V+++ F+ G WLAS S D + +W + FE SGHK +
Sbjct: 35 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK----FEKTISGHKLGI 90
Query: 1047 FQAKFLPNSGDSTLAMCARDGQ-VRVAELSATQCCKNTKRVAQHKGASHKLALEPDSPCT 1223
+ S DS L + A D + +++ ++S+ +C K K H P S
Sbjct: 91 SDVAW---SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKG---HSNYVFCCNFNPQSNLI 144
Query: 1224 FLSAGEDAV----VFTIDLRQDRPASXXXXXXXXXXXXGLYTIYVNPANTHQFAVGGRDQ 1391
+ +++V V T + PA G + D
Sbjct: 145 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS-----------SSYDG 193
Query: 1392 FVRIYDQRKIDENENNGVLKKFCPHHLVNSESKANITCLVYSHDGTELLASYNDEDIYLF 1571
RI+D C L++ ++ ++ + +S +G +LA+ D + L+
Sbjct: 194 LCRIWDTASGQ-----------CLKTLIDDDNPP-VSFVKFSPNGKYILAATLDNTLKLW 241
Query: 1572 NSSHSDGAQYIKRYKGHRNNATVKGVNFYGPKSEFVVSGSDCGHIFLWEKSSCQIIQFME 1751
+ S + +K Y GH+N NF +++VSGS+ +++W + +I+Q ++
Sbjct: 242 DYSKG---KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 298
Query: 1752 GDKGGVVNCLEPHPHLPVLATSGLDHD--VKIW 1844
G V++ HP ++A++ L++D +K+W
Sbjct: 299 GHTDVVIS-TACHPTENIIASAALENDKTIKLW 330
>ref|NP_001098929.1| WD repeat-containing protein 82 [Bos taurus].
Length = 313
Score = 62.4 bits (150), Expect = 2e-09
Identities = 74/338 (21%), Positives = 131/338 (38%), Gaps = 7/338 (2%)
Frame = +3
Query: 867 VQRFRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDLKVVVWDWVRRQPVLDFESGHKSNV 1046
++ FR+ ++ +N F+ G + S SDD +V++D +P S K V
Sbjct: 8 LRSFRVAKVFRENSDKINCFDFSPNGETVISSSDDDSIVLYDCQEGKPKRTLYS-KKYGV 66
Query: 1047 FQAKFLPNSGDSTLAMCARDGQVRVAELSATQCCKNTKRVAQHKGASHKLALEPDSPC-- 1220
++ + + D +R L + K + G S ++ SP
Sbjct: 67 DLIRYTHAANTVVYSSNKIDDTIRYLSLH------DNKYIRYFPGHSKRVVALSMSPVDD 120
Query: 1221 TFLSAGEDAVVFTIDLRQDRPASXXXXXXXXXXXXGLYTIYVNPANTHQ-----FAVGGR 1385
TF+S D + DLR GL + P + FA G
Sbjct: 121 TFISGSLDKTIRLWDLRSPN-------------CQGLMHLQGKPVCSFDPEGLIFAAGVN 167
Query: 1386 DQFVRIYDQRKIDENENNGVLKKFCPHHLVNSESKANITCLVYSHDGTELLASYNDEDIY 1565
+ V++YD R D+ G F + + T L +S+DG +L S N I
Sbjct: 168 SEMVKLYDLRSFDK----GPFATFKMQY----DRTCEWTGLKFSNDGKLILISTNGSFIR 219
Query: 1566 LFNSSHSDGAQYIKRYKGHRNNATVKGVNFYGPKSEFVVSGSDCGHIFLWEKSSCQIIQF 1745
L ++ + + G+ N+ V + P S+F++ GS+ G I +W S +
Sbjct: 220 LIDAFKG---VVMHTFGGYANSKAVTLEASFTPDSQFIMIGSEDGKIHVWNGESGIKVAV 276
Query: 1746 MEGDKGGVVNCLEPHPHLPVLATSGLDHDVKIWAPTAE 1859
++G G + CL+ +P A++ ++ W PT +
Sbjct: 277 LDGKHTGPITCLQFNPKFMTFASA--CSNMAFWLPTID 312
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 86,189,586
Number of extensions: 2512460
Number of successful extensions: 10735
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 10583
Number of HSP's successfully gapped: 16
Length of query: 755
Length of database: 17,681,374
Length adjustment: 110
Effective length of query: 645
Effective length of database: 14,041,694
Effective search space: 9056892630
Effective search space used: 9056892630
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007192
(2267 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_536129.2| PREDICTED: similar to H326 [Canis familiaris]. 1046 0.0
Alignment gi|XP_548912.2| PREDICTED: similar to H326 [Canis familiaris]. 757 0.0
Alignment gi|XP_862672.1| PREDICTED: similar to IQ motif and WD repeats 1... 143 6e-34
Alignment gi|XP_862648.1| PREDICTED: similar to IQ motif and WD repeats 1... 143 6e-34
Alignment gi|XP_537208.2| PREDICTED: similar to IQ motif and WD repeats 1... 143 6e-34
Alignment gi|XP_862605.1| PREDICTED: similar to IQ motif and WD repeats 1... 143 6e-34
Alignment gi|XP_862582.1| PREDICTED: similar to IQ motif and WD repeats 1... 143 6e-34
Alignment gi|XP_544473.2| PREDICTED: similar to WD and tetratricopeptide ... 125 1e-28
Alignment gi|XP_850117.1| PREDICTED: similar to WD repeat domain 5 [Canis... 69 3e-11
Alignment gi|XP_547871.2| PREDICTED: similar to WD-repeat protein 22 (Bre... 67 7e-11
>ref|XP_536129.2| PREDICTED: similar to H326 [Canis familiaris].
Length = 596
Score = 1046 bits (2704), Expect = 0.0
Identities = 520/596 (87%), Positives = 523/596 (87%)
Frame = +3
Query: 333 MSSKGSSTDGKTDLANGSLSSSPEEMSGAEEGRETSSGIEVEASDLSLSLTGDDGGPNRT 512
MSSKGSS DGKTDLANGSLSSSPEEMSGAEEGRETSSGIEVEASDLSLSLTGDDGGPNRT
Sbjct: 1 MSSKGSSADGKTDLANGSLSSSPEEMSGAEEGRETSSGIEVEASDLSLSLTGDDGGPNRT 60
Query: 513 STESRGTDTESSGEDKDSDSMEDTGHYSINDENQVHDPSXXXXXXXXXXXXXXXXXXXXX 692
ST SRGTDTESSGEDKDSDSMEDTGHYSINDENQVHD S
Sbjct: 61 STGSRGTDTESSGEDKDSDSMEDTGHYSINDENQVHDRSEEEEEEEEEEEEHPRRRVQRK 120
Query: 693 XANRDQDSSDDERALEDWVASETSALPRPRWQALPALRERELGSSARFVYEACGARVFVQ 872
ANRDQDSSDDERALEDWV+SETSALPRPRWQALPALRERELGSSARFVYEACGARVFVQ
Sbjct: 121 RANRDQDSSDDERALEDWVSSETSALPRPRWQALPALRERELGSSARFVYEACGARVFVQ 180
Query: 873 RFRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDLKVVVWDWVRRQPVLDFESGHKSNVFQ 1052
RFRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDLKVVVWDWVRRQPVLDFESGHKSNVFQ
Sbjct: 181 RFRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDLKVVVWDWVRRQPVLDFESGHKSNVFQ 240
Query: 1053 AKFLPNSGDSTLAMCARDGQVRVAELSATQCCKNTKRVAQHKGASHKLALEPDSPCTFLS 1232
AKFLPNSGDSTLAMCARDGQVRVAELSATQCCKNTKRVAQHKGASHKLALEPDSPCTFLS
Sbjct: 241 AKFLPNSGDSTLAMCARDGQVRVAELSATQCCKNTKRVAQHKGASHKLALEPDSPCTFLS 300
Query: 1233 AGEDAVVFTIDLRQDRPASXXXXXXXXXXXXGLYTIYVNPANTHQFAVGGRDQFVRIYDQ 1412
AGEDAVVFTIDLRQDRPAS GLYTIYVNPANTHQFAVGGRDQFVRIYDQ
Sbjct: 301 AGEDAVVFTIDLRQDRPASKLVVTKEKEKKVGLYTIYVNPANTHQFAVGGRDQFVRIYDQ 360
Query: 1413 RKIDENENNGVLKKFCPHHLVNSESKANITCLVYSHDGTELLASYNDEDIYLFNSSHSDG 1592
RKIDENENNGVLKKFCPHHLVNSESKANITCLVYSHDGTELLASYNDEDIYLFNSSHSDG
Sbjct: 361 RKIDENENNGVLKKFCPHHLVNSESKANITCLVYSHDGTELLASYNDEDIYLFNSSHSDG 420
Query: 1593 AQYIKRYKGHRNNATVKGVNFYGPKSEFVVSGSDCGHIFLWEKSSCQIIQFMEGDKGGVV 1772
AQY+KRYKGHRNNATVKGVNFYGPKSEFVVSGSDCGHIFLWEKSSCQI+QFMEGDKGGVV
Sbjct: 421 AQYVKRYKGHRNNATVKGVNFYGPKSEFVVSGSDCGHIFLWEKSSCQIVQFMEGDKGGVV 480
Query: 1773 NCLEPHPHLPVLATSGLDHDVKIWAPTAETSTELTGLKDVIKKNKRERDEDSLHHTDLFD 1952
NCLEPHPHLPVLATSGLDHDVKIWAPTAETSTELTGLKDVIKKNKRERDEDSLHHTDLFD
Sbjct: 481 NCLEPHPHLPVLATSGLDHDVKIWAPTAETSTELTGLKDVIKKNKRERDEDSLHHTDLFD 540
Query: 1953 SHMLWFLMXXXXXXXXXXXXXEPGVGXXXXXXXXXXXXXXXXXXXXXXXRVQCMPS 2120
SHMLWFLM EPGVG RVQCMPS
Sbjct: 541 SHMLWFLMHHLRQRRHHRRWREPGVGATDADSDESPSSSDTSDEEEGPDRVQCMPS 596
>ref|XP_548912.2| PREDICTED: similar to H326 [Canis familiaris].
Length = 520
Score = 757 bits (1955), Expect = 0.0
Identities = 363/475 (76%), Positives = 396/475 (83%)
Frame = +3
Query: 696 ANRDQDSSDDERALEDWVASETSALPRPRWQALPALRERELGSSARFVYEACGARVFVQR 875
AN DQ SD++RALE+WV SETS LPRPRWQ + ALRER+LGSSARFVYEACGAR+FVQR
Sbjct: 46 ANYDQYLSDEDRALEEWVTSETSTLPRPRWQIVSALRERQLGSSARFVYEACGARLFVQR 105
Query: 876 FRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDLKVVVWDWVRRQPVLDFESGHKSNVFQA 1055
F L H LEGH GCVNT+HFNQRGTWLAS SDDLKV+VWDWVR+ PVL+F SGHK+NVFQA
Sbjct: 106 FHLLHELEGHHGCVNTVHFNQRGTWLASSSDDLKVIVWDWVRKHPVLEFMSGHKNNVFQA 165
Query: 1056 KFLPNSGDSTLAMCARDGQVRVAELSATQCCKNTKRVAQHKGASHKLALEPDSPCTFLSA 1235
KFLPN GDSTLAMCARDGQVR+AELSA CKNTKRVAQH+GASHKLALEPDSP FL++
Sbjct: 166 KFLPNCGDSTLAMCARDGQVRIAELSAIPHCKNTKRVAQHRGASHKLALEPDSPFKFLTS 225
Query: 1236 GEDAVVFTIDLRQDRPASXXXXXXXXXXXXGLYTIYVNPANTHQFAVGGRDQFVRIYDQR 1415
GEDAVVF IDLRQ RPAS GLYTI+VNPANT+QFAVGGRDQFVRIYDQR
Sbjct: 226 GEDAVVFAIDLRQGRPASRVVVTKEREKKVGLYTIHVNPANTYQFAVGGRDQFVRIYDQR 285
Query: 1416 KIDENENNGVLKKFCPHHLVNSESKANITCLVYSHDGTELLASYNDEDIYLFNSSHSDGA 1595
KIDENENNGVLKKFCPHHLVN ESKANITCLVYSHDGTELLASYNDEDIYLFNSS DGA
Sbjct: 286 KIDENENNGVLKKFCPHHLVNCESKANITCLVYSHDGTELLASYNDEDIYLFNSSDGDGA 345
Query: 1596 QYIKRYKGHRNNATVKGVNFYGPKSEFVVSGSDCGHIFLWEKSSCQIIQFMEGDKGGVVN 1775
QY+K+YKGHRNNAT+KGVNFYGP+SEFVVSGSDCGHIFLWEKSSCQI+QFMEGDKGG +N
Sbjct: 346 QYVKKYKGHRNNATIKGVNFYGPRSEFVVSGSDCGHIFLWEKSSCQIVQFMEGDKGGTIN 405
Query: 1776 CLEPHPHLPVLATSGLDHDVKIWAPTAETSTELTGLKDVIKKNKRERDEDSLHHTDLFDS 1955
CLEPHP+LPV+ATSGLDH+ KIWAPTAE +TELTGLK++IK+NK+ERDED +HHTDLFDS
Sbjct: 406 CLEPHPYLPVMATSGLDHNAKIWAPTAEATTELTGLKNMIKRNKQERDEDRMHHTDLFDS 465
Query: 1956 HMLWFLMXXXXXXXXXXXXXEPGVGXXXXXXXXXXXXXXXXXXXXXXXRVQCMPS 2120
HMLWFLM PGVG VQC+PS
Sbjct: 466 HMLWFLMRHLTQRGHHQRQRAPGVGVMDAESDESSTTSSSSEEEENQDHVQCLPS 520
>ref|XP_862672.1| PREDICTED: similar to IQ motif and WD repeats 1 isoform a isoform 5
[Canis familiaris].
Length = 879
Score = 143 bits (361), Expect = 6e-34
Identities = 89/281 (31%), Positives = 138/281 (49%), Gaps = 12/281 (4%)
Frame = +3
Query: 801 LRERELG--SSARFVYEACGARVFVQRFRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDL 974
+R+R LG +R G R F+QR +L+ L H GCVNT+ +N+ G ++ SGSDD
Sbjct: 14 VRKRSLGLEDPSRLRSRYLGRREFIQRLKLEATLNVHDGCVNTICWNETGEYILSGSDDT 73
Query: 975 KVVVWDWVRRQPVLDFESGHKSNVFQAKFLPNSGDSTLAMCARDGQVRVAELSATQCCKN 1154
K+V+ + R+ + SGH++N+F AKFLP + D + C+ DG + +
Sbjct: 74 KLVISNPYSRKVLTTIRSGHRANIFSAKFLPCTNDKQIVSCSGDGVIFYTNVEQDAETNR 133
Query: 1155 TKRVAQHKGASHKLALEPDSPCTFLSAGEDAVV--FTIDLRQDRPASXXXXXXXXXXXXG 1328
+ H G ++++ P+ P TFLS GED V F ++
Sbjct: 134 QCQFTCHYGTTYEIMTVPNDPYTFLSCGEDGTVRWFDTRIKTSCTKEDCKDDILINCRRA 193
Query: 1329 LYTIYVNPANTHQFAVGGRDQFVRIYDQRKIDENE--------NNGVLKKFCPHHLVNSE 1484
++ + P + AVG D VRIYD+R + G++ +F P HL N
Sbjct: 194 ATSVAICPPIPYYLAVGCSDSSVRIYDRRMLGTRATGNYAGRGTTGMVARFIPSHLNNKS 253
Query: 1485 SKANITCLVYSHDGTELLASYNDEDIYLFNSSHSDGAQYIK 1607
+ +T L YS DG E+L SY+ + IYLF+ D A+ +K
Sbjct: 254 CR--VTSLCYSEDGQEILVSYSSDYIYLFDPK-DDTARELK 291
Score = 102 bits (254), Expect = 2e-21
Identities = 51/106 (48%), Positives = 74/106 (69%), Gaps = 2/106 (1%)
Frame = +3
Query: 1611 YKGHRNNAT-VKGVNFYGPKSEFVVSGSDCGHIFLWEKSSCQIIQFMEGDKGGVVNCLEP 1787
YKGHRN+ T +K NF+G + FV+SGSDCGHIF+W++ + + + +E D VVNCL+P
Sbjct: 732 YKGHRNSRTMIKEANFWG--ANFVMSGSDCGHIFIWDRHTAEHLMLLEADNH-VVNCLQP 788
Query: 1788 HPHLPVLATSGLDHDVKIWAPTAETSTELTGLKD-VIKKNKRERDE 1922
HP P+LA+SG+D+D+KIW+P E+ L D VI +N+ +E
Sbjct: 789 HPFDPILASSGIDYDIKIWSPLEESRIFNRKLADEVITRNELMLEE 834
>ref|XP_862648.1| PREDICTED: similar to IQ motif and WD repeats 1 isoform a isoform 4
[Canis familiaris].
Length = 936
Score = 143 bits (361), Expect = 6e-34
Identities = 89/281 (31%), Positives = 138/281 (49%), Gaps = 12/281 (4%)
Frame = +3
Query: 801 LRERELG--SSARFVYEACGARVFVQRFRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDL 974
+R+R LG +R G R F+QR +L+ L H GCVNT+ +N+ G ++ SGSDD
Sbjct: 14 VRKRSLGLEDPSRLRSRYLGRREFIQRLKLEATLNVHDGCVNTICWNETGEYILSGSDDT 73
Query: 975 KVVVWDWVRRQPVLDFESGHKSNVFQAKFLPNSGDSTLAMCARDGQVRVAELSATQCCKN 1154
K+V+ + R+ + SGH++N+F AKFLP + D + C+ DG + +
Sbjct: 74 KLVISNPYSRKVLTTIRSGHRANIFSAKFLPCTNDKQIVSCSGDGVIFYTNVEQDAETNR 133
Query: 1155 TKRVAQHKGASHKLALEPDSPCTFLSAGEDAVV--FTIDLRQDRPASXXXXXXXXXXXXG 1328
+ H G ++++ P+ P TFLS GED V F ++
Sbjct: 134 QCQFTCHYGTTYEIMTVPNDPYTFLSCGEDGTVRWFDTRIKTSCTKEDCKDDILINCRRA 193
Query: 1329 LYTIYVNPANTHQFAVGGRDQFVRIYDQRKIDENE--------NNGVLKKFCPHHLVNSE 1484
++ + P + AVG D VRIYD+R + G++ +F P HL N
Sbjct: 194 ATSVAICPPIPYYLAVGCSDSSVRIYDRRMLGTRATGNYAGRGTTGMVARFIPSHLNNKS 253
Query: 1485 SKANITCLVYSHDGTELLASYNDEDIYLFNSSHSDGAQYIK 1607
+ +T L YS DG E+L SY+ + IYLF+ D A+ +K
Sbjct: 254 CR--VTSLCYSEDGQEILVSYSSDYIYLFDPK-DDTARELK 291
Score = 102 bits (254), Expect = 2e-21
Identities = 51/106 (48%), Positives = 74/106 (69%), Gaps = 2/106 (1%)
Frame = +3
Query: 1611 YKGHRNNAT-VKGVNFYGPKSEFVVSGSDCGHIFLWEKSSCQIIQFMEGDKGGVVNCLEP 1787
YKGHRN+ T +K NF+G + FV+SGSDCGHIF+W++ + + + +E D VVNCL+P
Sbjct: 789 YKGHRNSRTMIKEANFWG--ANFVMSGSDCGHIFIWDRHTAEHLMLLEADNH-VVNCLQP 845
Query: 1788 HPHLPVLATSGLDHDVKIWAPTAETSTELTGLKD-VIKKNKRERDE 1922
HP P+LA+SG+D+D+KIW+P E+ L D VI +N+ +E
Sbjct: 846 HPFDPILASSGIDYDIKIWSPLEESRIFNRKLADEVITRNELMLEE 891
>ref|XP_537208.2| PREDICTED: similar to IQ motif and WD repeats 1 isoform a isoform 1
[Canis familiaris].
Length = 950
Score = 143 bits (361), Expect = 6e-34
Identities = 89/281 (31%), Positives = 138/281 (49%), Gaps = 12/281 (4%)
Frame = +3
Query: 801 LRERELG--SSARFVYEACGARVFVQRFRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDL 974
+R+R LG +R G R F+QR +L+ L H GCVNT+ +N+ G ++ SGSDD
Sbjct: 14 VRKRSLGLEDPSRLRSRYLGRREFIQRLKLEATLNVHDGCVNTICWNETGEYILSGSDDT 73
Query: 975 KVVVWDWVRRQPVLDFESGHKSNVFQAKFLPNSGDSTLAMCARDGQVRVAELSATQCCKN 1154
K+V+ + R+ + SGH++N+F AKFLP + D + C+ DG + +
Sbjct: 74 KLVISNPYSRKVLTTIRSGHRANIFSAKFLPCTNDKQIVSCSGDGVIFYTNVEQDAETNR 133
Query: 1155 TKRVAQHKGASHKLALEPDSPCTFLSAGEDAVV--FTIDLRQDRPASXXXXXXXXXXXXG 1328
+ H G ++++ P+ P TFLS GED V F ++
Sbjct: 134 QCQFTCHYGTTYEIMTVPNDPYTFLSCGEDGTVRWFDTRIKTSCTKEDCKDDILINCRRA 193
Query: 1329 LYTIYVNPANTHQFAVGGRDQFVRIYDQRKIDENE--------NNGVLKKFCPHHLVNSE 1484
++ + P + AVG D VRIYD+R + G++ +F P HL N
Sbjct: 194 ATSVAICPPIPYYLAVGCSDSSVRIYDRRMLGTRATGNYAGRGTTGMVARFIPSHLNNKS 253
Query: 1485 SKANITCLVYSHDGTELLASYNDEDIYLFNSSHSDGAQYIK 1607
+ +T L YS DG E+L SY+ + IYLF+ D A+ +K
Sbjct: 254 CR--VTSLCYSEDGQEILVSYSSDYIYLFDPK-DDTARELK 291
Score = 102 bits (254), Expect = 2e-21
Identities = 51/106 (48%), Positives = 74/106 (69%), Gaps = 2/106 (1%)
Frame = +3
Query: 1611 YKGHRNNAT-VKGVNFYGPKSEFVVSGSDCGHIFLWEKSSCQIIQFMEGDKGGVVNCLEP 1787
YKGHRN+ T +K NF+G + FV+SGSDCGHIF+W++ + + + +E D VVNCL+P
Sbjct: 803 YKGHRNSRTMIKEANFWG--ANFVMSGSDCGHIFIWDRHTAEHLMLLEADNH-VVNCLQP 859
Query: 1788 HPHLPVLATSGLDHDVKIWAPTAETSTELTGLKD-VIKKNKRERDE 1922
HP P+LA+SG+D+D+KIW+P E+ L D VI +N+ +E
Sbjct: 860 HPFDPILASSGIDYDIKIWSPLEESRIFNRKLADEVITRNELMLEE 905
>ref|XP_862605.1| PREDICTED: similar to IQ motif and WD repeats 1 isoform a isoform 3
[Canis familiaris].
Length = 472
Score = 143 bits (361), Expect = 6e-34
Identities = 89/281 (31%), Positives = 138/281 (49%), Gaps = 12/281 (4%)
Frame = +3
Query: 801 LRERELG--SSARFVYEACGARVFVQRFRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDL 974
+R+R LG +R G R F+QR +L+ L H GCVNT+ +N+ G ++ SGSDD
Sbjct: 14 VRKRSLGLEDPSRLRSRYLGRREFIQRLKLEATLNVHDGCVNTICWNETGEYILSGSDDT 73
Query: 975 KVVVWDWVRRQPVLDFESGHKSNVFQAKFLPNSGDSTLAMCARDGQVRVAELSATQCCKN 1154
K+V+ + R+ + SGH++N+F AKFLP + D + C+ DG + +
Sbjct: 74 KLVISNPYSRKVLTTIRSGHRANIFSAKFLPCTNDKQIVSCSGDGVIFYTNVEQDAETNR 133
Query: 1155 TKRVAQHKGASHKLALEPDSPCTFLSAGEDAVV--FTIDLRQDRPASXXXXXXXXXXXXG 1328
+ H G ++++ P+ P TFLS GED V F ++
Sbjct: 134 QCQFTCHYGTTYEIMTVPNDPYTFLSCGEDGTVRWFDTRIKTSCTKEDCKDDILINCRRA 193
Query: 1329 LYTIYVNPANTHQFAVGGRDQFVRIYDQRKIDENE--------NNGVLKKFCPHHLVNSE 1484
++ + P + AVG D VRIYD+R + G++ +F P HL N
Sbjct: 194 ATSVAICPPIPYYLAVGCSDSSVRIYDRRMLGTRATGNYAGRGTTGMVARFIPSHLNNKS 253
Query: 1485 SKANITCLVYSHDGTELLASYNDEDIYLFNSSHSDGAQYIK 1607
+ +T L YS DG E+L SY+ + IYLF+ D A+ +K
Sbjct: 254 CR--VTSLCYSEDGQEILVSYSSDYIYLFDPK-DDTARELK 291
>ref|XP_862582.1| PREDICTED: similar to IQ motif and WD repeats 1 isoform b isoform 2
[Canis familiaris].
Length = 859
Score = 143 bits (361), Expect = 6e-34
Identities = 89/281 (31%), Positives = 138/281 (49%), Gaps = 12/281 (4%)
Frame = +3
Query: 801 LRERELG--SSARFVYEACGARVFVQRFRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDL 974
+R+R LG +R G R F+QR +L+ L H GCVNT+ +N+ G ++ SGSDD
Sbjct: 14 VRKRSLGLEDPSRLRSRYLGRREFIQRLKLEATLNVHDGCVNTICWNETGEYILSGSDDT 73
Query: 975 KVVVWDWVRRQPVLDFESGHKSNVFQAKFLPNSGDSTLAMCARDGQVRVAELSATQCCKN 1154
K+V+ + R+ + SGH++N+F AKFLP + D + C+ DG + +
Sbjct: 74 KLVISNPYSRKVLTTIRSGHRANIFSAKFLPCTNDKQIVSCSGDGVIFYTNVEQDAETNR 133
Query: 1155 TKRVAQHKGASHKLALEPDSPCTFLSAGEDAVV--FTIDLRQDRPASXXXXXXXXXXXXG 1328
+ H G ++++ P+ P TFLS GED V F ++
Sbjct: 134 QCQFTCHYGTTYEIMTVPNDPYTFLSCGEDGTVRWFDTRIKTSCTKEDCKDDILINCRRA 193
Query: 1329 LYTIYVNPANTHQFAVGGRDQFVRIYDQRKIDENE--------NNGVLKKFCPHHLVNSE 1484
++ + P + AVG D VRIYD+R + G++ +F P HL N
Sbjct: 194 ATSVAICPPIPYYLAVGCSDSSVRIYDRRMLGTRATGNYAGRGTTGMVARFIPSHLNNKS 253
Query: 1485 SKANITCLVYSHDGTELLASYNDEDIYLFNSSHSDGAQYIK 1607
+ +T L YS DG E+L SY+ + IYLF+ D A+ +K
Sbjct: 254 CR--VTSLCYSEDGQEILVSYSSDYIYLFDPK-DDTARELK 291
Score = 102 bits (254), Expect = 2e-21
Identities = 51/106 (48%), Positives = 74/106 (69%), Gaps = 2/106 (1%)
Frame = +3
Query: 1611 YKGHRNNAT-VKGVNFYGPKSEFVVSGSDCGHIFLWEKSSCQIIQFMEGDKGGVVNCLEP 1787
YKGHRN+ T +K NF+G + FV+SGSDCGHIF+W++ + + + +E D VVNCL+P
Sbjct: 712 YKGHRNSRTMIKEANFWG--ANFVMSGSDCGHIFIWDRHTAEHLMLLEADNH-VVNCLQP 768
Query: 1788 HPHLPVLATSGLDHDVKIWAPTAETSTELTGLKD-VIKKNKRERDE 1922
HP P+LA+SG+D+D+KIW+P E+ L D VI +N+ +E
Sbjct: 769 HPFDPILASSGIDYDIKIWSPLEESRIFNRKLADEVITRNELMLEE 814
>ref|XP_544473.2| PREDICTED: similar to WD and tetratricopeptide repeats protein 1
[Canis familiaris].
Length = 679
Score = 125 bits (315), Expect = 1e-28
Identities = 82/270 (30%), Positives = 129/270 (47%), Gaps = 30/270 (11%)
Frame = +3
Query: 864 FVQRFRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDLKVVVWDWVRRQPVLDFESGHKSN 1043
F++R L+ L+GH+GCVN L +N++G LASGSDD +VWD + + +L +GH +N
Sbjct: 33 FIRRLGLEAELQGHSGCVNCLEWNEKGDLLASGSDDQHTIVWDPLHHKKLLSMHTGHTAN 92
Query: 1044 VFQAKFLPNSGDSTLAMCARDGQVRVAELSATQCCKNTKRVAQHKGASHKLALEPDSPCT 1223
+F KFLP++GD L A D +V V +L+ + H ++A P P T
Sbjct: 93 IFSVKFLPHAGDRILITGAADSKVHVHDLTVKE---TIHMFGDHTNRVKRIATAPMWPNT 149
Query: 1224 FLSAGEDAVVFTIDLRQDRPASXXXXXXXXXXXXGLYT--IYVNPANTHQFAVGGRDQFV 1397
F SA ED ++ DLR++ S + + VNP + + AVG FV
Sbjct: 150 FWSAAEDGLIRQYDLRENSKHSEVLIDLTEYCGQLVEAKCLTVNPQDNNCLAVGASGPFV 209
Query: 1398 RIYDQRKIDENEN---------------------NGVLKKFCPHHL------VNSESKAN 1496
R+YD R I + +G + + HL N+ +
Sbjct: 210 RLYDIRMIHNHRKSMKQSPSAGVHTFCDRQKPLPDGAAQYYVAGHLPVKLPDYNNRLRVL 269
Query: 1497 I-TCLVYSHDGTELLASYNDEDIYLFNSSH 1583
+ T + +S +GTELL + E +YLF+ ++
Sbjct: 270 VATYVTFSPNGTELLVNMGGEQVYLFDLTY 299
Score = 93.2 bits (230), Expect = 1e-18
Identities = 51/136 (37%), Positives = 82/136 (60%), Gaps = 6/136 (4%)
Frame = +3
Query: 1542 SYNDEDIYLFNSSHSDGAQYIKRYKGHRNNAT-VKGVNFYGPKSEFVVSGSDCGHIFLWE 1718
S +++++ L S+ Y RY GH N T +K NF+G ++++VSGSD G F+WE
Sbjct: 513 SISEDEMVLRERSYD----YQFRYCGHCNTTTDIKEANFFGSNAQYIVSGSDDGSFFIWE 568
Query: 1719 KSSCQIIQFMEGDKGGVVNCLEPHPHLPVLATSGLDHDVKIWAPTAETSTELTG-----L 1883
K + +++ ++GD+ +VNCL+PHP LATSG+D V++W P E S +LTG +
Sbjct: 569 KETTNLVRVLQGDE-SIVNCLQPHPSYCFLATSGIDPVVRLWNPRPE-SEDLTGRVVEDM 626
Query: 1884 KDVIKKNKRERDEDSL 1931
+ + N+R + D L
Sbjct: 627 EGASQANQRRMNADPL 642
>ref|XP_850117.1| PREDICTED: similar to WD repeat domain 5 [Canis familiaris].
Length = 334
Score = 68.6 bits (166), Expect = 3e-11
Identities = 75/329 (22%), Positives = 141/329 (42%), Gaps = 6/329 (1%)
Frame = +3
Query: 876 FRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDLKVVVWDWVRRQPVLDFE---SGHKSNV 1046
+ L+ L GHT V+++ F+ G WLAS S D + +W + FE SGHK +
Sbjct: 35 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK----FEKTISGHKLGI 90
Query: 1047 FQAKFLPNSGDSTLAMCARDGQ-VRVAELSATQCCKNTKRVAQHKGASHKLALEPDSPCT 1223
+ S DS L + A D + +++ ++S+ +C K K H P S
Sbjct: 91 SDVAW---SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKG---HSNYVFCCNFNPQSNL- 143
Query: 1224 FLSAGEDAVVFTIDLRQDRPASXXXXXXXXXXXXGLYTIYVNPANTHQFAVGGRDQFVRI 1403
+S D V D++ + + +P + F G
Sbjct: 144 IVSGSFDESVRIWDVKTGKCLKTLPA-------------HSDPVSAVHFNRDGSLIVSSS 190
Query: 1404 YDQRKIDENENNGVLKKFCPHHLVNSESKANITCLVYSHDGTELLASYNDEDIYLFNSSH 1583
YD + N + L+ + ++ + +S +G +LA+ D + L++ S
Sbjct: 191 YDG--LCGKTGNAASRCM---KLILDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 245
Query: 1584 SDGAQYIKRYKGHRNNATVKGVNFYGPKSEFVVSGSDCGHIFLWEKSSCQIIQFMEGDKG 1763
+ +K Y GH+N NF +++VSGS+ +++W + +I+Q ++G
Sbjct: 246 G---KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTD 302
Query: 1764 GVVNCLEPHPHLPVLATSGLDHD--VKIW 1844
V++ HP ++A++ L++D +K+W
Sbjct: 303 VVIS-TACHPTENIIASAALENDKTIKLW 330
>ref|XP_547871.2| PREDICTED: similar to WD-repeat protein 22 (Breakpoint cluster region
protein 2) (BCRP2) isoform 1 [Canis familiaris].
Length = 865
Score = 67.0 bits (162), Expect = 7e-11
Identities = 65/289 (22%), Positives = 132/289 (45%), Gaps = 10/289 (3%)
Frame = +3
Query: 1014 LDFESGHKSNVFQAKFLPNSGDSTLAMCARDGQVRVAELSATQCCKNTKRVAQHKGASHK 1193
+ + H SN+F F NSG++ + D QV + ++ +++ T V H+ A +
Sbjct: 12 IQLKGEHHSNIFCLAF--NSGNTKVFSGGNDEQVILHDVESSE----TLDVFAHEDAVYG 65
Query: 1194 LALEPDSPCTFLSAGEDAVVFTIDLRQDRPASXXXXXXXXXXXXGLYTIYVNPANTHQFA 1373
L++ P + F S+ +D V D+R+ + +++ NP A
Sbjct: 66 LSVSPVNDNIFASSSDDGRVLIWDIRE---SPHGEPFCLANYPSAFHSVMFNPVEPRLLA 122
Query: 1374 VGGRDQFVRIYDQRKIDENENNGVLKKFCPHHLVNSESKANITCLVYSHDGTELLASYND 1553
+ V ++D RK + L ++ + + S ++ +GT+LLA
Sbjct: 123 TANSKEGVGLWDIRKPQSS-----LLRYGGNLSLQSAMSVR-----FNSNGTQLLALRRR 172
Query: 1554 EDIYLFNSSHSDGAQYIKRYKGHRNNATVKGVNFYGPKSEFVVSGSDCGHIFLW----EK 1721
L++ HS + +G+ N+ T+K F G + ++++SGSD ++++W +
Sbjct: 173 LPPVLYDI-HSRLPVFQFDNQGYFNSCTMKSCCFAGDRDQYILSGSDDFNLYMWRIPADP 231
Query: 1722 SSCQIIQFMEGD----KG--GVVNCLEPHPHLPVLATSGLDHDVKIWAP 1850
+ I + + G KG +VN + +PH ++ +SG++ +KIW+P
Sbjct: 232 EAGGIGRVVNGAFMVLKGHRSIVNQVRFNPHTYMICSSGVEKIIKIWSP 280
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 89,406,864
Number of extensions: 2524035
Number of successful extensions: 11206
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 11047
Number of HSP's successfully gapped: 18
Length of query: 755
Length of database: 18,874,504
Length adjustment: 110
Effective length of query: 645
Effective length of database: 15,207,544
Effective search space: 9808865880
Effective search space used: 9808865880
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007192
(2267 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_056541.2| DDB1- and CUL4-associated factor 8 [Homo sapien... 1038 0.0
Alignment gi|NP_001130005.1| DDB1- and CUL4-associated factor 8-like prot... 741 0.0
Alignment gi|NP_001017930.1| DDB1- and CUL4-associated factor 8-like prot... 702 0.0
Alignment gi|NP_001185885.1| DDB1- and CUL4-associated factor 6 isoform c... 142 1e-33
Alignment gi|NP_001017977.1| DDB1- and CUL4-associated factor 6 isoform b... 142 1e-33
Alignment gi|NP_060912.2| DDB1- and CUL4-associated factor 6 isoform a [H... 142 1e-33
Alignment gi|NP_055838.2| WD and tetratricopeptide repeats protein 1 [Hom... 126 1e-28
Alignment gi|NP_001185886.1| DDB1- and CUL4-associated factor 6 isoform d... 105 2e-22
Alignment gi|NP_003852.1| DDB1- and CUL4-associated factor 5 [Homo sapien... 97 5e-20
Alignment gi|NP_438172.1| WD repeat-containing protein 5 [Homo sapiens]. 70 1e-11
>ref|NP_056541.2| DDB1- and CUL4-associated factor 8 [Homo sapiens].
Length = 597
Score = 1038 bits (2685), Expect = 0.0
Identities = 519/597 (86%), Positives = 523/597 (87%), Gaps = 1/597 (0%)
Frame = +3
Query: 333 MSSKGSSTDGKTDLANGSLSSSPEEMSGAEEGRETSSGIEVEASDLSLSLTGDDGGPNRT 512
MSSKGSSTDG+TDLANGSLSSSPEEMSGAEEGRETSSGIEVEASDLSLSLTGDDGGPNRT
Sbjct: 1 MSSKGSSTDGRTDLANGSLSSSPEEMSGAEEGRETSSGIEVEASDLSLSLTGDDGGPNRT 60
Query: 513 STESRGTDTESSGEDKDSDSMEDTGHYSINDENQVHDPSXXXXXXXXXXXXXXXXXXXXX 692
STESRGTDTESSGEDKDSDSMEDTGHYSINDEN+VHD S
Sbjct: 61 STESRGTDTESSGEDKDSDSMEDTGHYSINDENRVHDRSEEEEEEEEEEEEEQPRRRVQR 120
Query: 693 X-ANRDQDSSDDERALEDWVASETSALPRPRWQALPALRERELGSSARFVYEACGARVFV 869
ANRDQDSSDDERALEDWV+SETSALPRPRWQALPALRERELGSSARFVYEACGARVFV
Sbjct: 121 KRANRDQDSSDDERALEDWVSSETSALPRPRWQALPALRERELGSSARFVYEACGARVFV 180
Query: 870 QRFRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDLKVVVWDWVRRQPVLDFESGHKSNVF 1049
QRFRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDLKVVVWDWVRRQPVLDFESGHKSNVF
Sbjct: 181 QRFRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDLKVVVWDWVRRQPVLDFESGHKSNVF 240
Query: 1050 QAKFLPNSGDSTLAMCARDGQVRVAELSATQCCKNTKRVAQHKGASHKLALEPDSPCTFL 1229
QAKFLPNSGDSTLAMCARDGQVRVAELSATQCCKNTKRVAQHKGASHKLALEPDSPCTFL
Sbjct: 241 QAKFLPNSGDSTLAMCARDGQVRVAELSATQCCKNTKRVAQHKGASHKLALEPDSPCTFL 300
Query: 1230 SAGEDAVVFTIDLRQDRPASXXXXXXXXXXXXGLYTIYVNPANTHQFAVGGRDQFVRIYD 1409
SAGEDAVVFTIDLRQDRPAS GLYTIYVNPANTHQFAVGGRDQFVRIYD
Sbjct: 301 SAGEDAVVFTIDLRQDRPASKLVVTKEKEKKVGLYTIYVNPANTHQFAVGGRDQFVRIYD 360
Query: 1410 QRKIDENENNGVLKKFCPHHLVNSESKANITCLVYSHDGTELLASYNDEDIYLFNSSHSD 1589
QRKIDENENNGVLKKFCPHHLVNSESKANITCLVYSHDGTELLASYNDEDIYLFNSSHSD
Sbjct: 361 QRKIDENENNGVLKKFCPHHLVNSESKANITCLVYSHDGTELLASYNDEDIYLFNSSHSD 420
Query: 1590 GAQYIKRYKGHRNNATVKGVNFYGPKSEFVVSGSDCGHIFLWEKSSCQIIQFMEGDKGGV 1769
GAQY+KRYKGHRNNATVKGVNFYGPKSEFVVSGSDCGHIFLWEKSSCQIIQFMEGDKGGV
Sbjct: 421 GAQYVKRYKGHRNNATVKGVNFYGPKSEFVVSGSDCGHIFLWEKSSCQIIQFMEGDKGGV 480
Query: 1770 VNCLEPHPHLPVLATSGLDHDVKIWAPTAETSTELTGLKDVIKKNKRERDEDSLHHTDLF 1949
VNCLEPHPHLPVLATSGLDHDVKIWAPTAE STELTGLKDVIKKNKRERDEDSLH TDLF
Sbjct: 481 VNCLEPHPHLPVLATSGLDHDVKIWAPTAEASTELTGLKDVIKKNKRERDEDSLHQTDLF 540
Query: 1950 DSHMLWFLMXXXXXXXXXXXXXEPGVGXXXXXXXXXXXXXXXXXXXXXXXRVQCMPS 2120
DSHMLWFLM EPGVG RVQCMPS
Sbjct: 541 DSHMLWFLMHHLRQRRHHRRWREPGVGATDADSDESPSSSDTSDEEEGPDRVQCMPS 597
>ref|NP_001130005.1| DDB1- and CUL4-associated factor 8-like protein 2 [Homo sapiens].
Length = 631
Score = 741 bits (1912), Expect = 0.0
Identities = 375/584 (64%), Positives = 430/584 (73%), Gaps = 36/584 (6%)
Frame = +3
Query: 333 MSSKGSSTDGKTDLANGSLSSSPEEMSGAEEGRETSSGIEVEASDLSLSLTGD-----DG 497
MS + STDG DL SL SSPEE SGA E SS I++ S+LS+++TGD DG
Sbjct: 1 MSHQEGSTDGLPDLGTESLFSSPEEQSGAVAATEASSDIDIATSELSVTVTGDGSDSRDG 60
Query: 498 G-PNRTSTESRGTDTESSGEDKDSDSMEDTGHYSINDENQVHDP---------------- 626
G PN STE+R +D ES+ ED + +S+ED H+ ++ E+ H P
Sbjct: 61 GFPNDASTENRSSDQESASEDIELESLEDFEHFLMSGESLFHYPLVGEEETEREEEDEEI 120
Query: 627 --------------SXXXXXXXXXXXXXXXXXXXXXXANRDQDSSDDERALEDWVASETS 764
N +Q S ++++ALE+WV+SETS
Sbjct: 121 QEEGGEEEEEEEEEEEEEEEEEEEEEEQPRAGPQGSGGNHEQYSLEEDQALEEWVSSETS 180
Query: 765 ALPRPRWQALPALRERELGSSARFVYEACGARVFVQRFRLQHGLEGHTGCVNTLHFNQRG 944
ALPRPRWQ + AL +R+LGS RFVYEACGAR FVQRFRLQ+ L H GCVNT+HFNQRG
Sbjct: 181 ALPRPRWQVVTALHQRQLGSRPRFVYEACGARAFVQRFRLQYRLADHVGCVNTVHFNQRG 240
Query: 945 TWLASGSDDLKVVVWDWVRRQPVLDFESGHKSNVFQAKFLPNSGDSTLAMCARDGQVRVA 1124
T LAS DDLKV+VWDWVR++PVL+FESGH +NVFQAKFLPN GDSTLAMCARDGQVRVA
Sbjct: 241 TRLASSGDDLKVIVWDWVRQRPVLNFESGHTNNVFQAKFLPNCGDSTLAMCARDGQVRVA 300
Query: 1125 ELSATQCCKNTKRVAQHKGASHKLALEPDSPCTFLSAGEDAVVFTIDLRQDRPASXXXXX 1304
EL NTK VAQH+G +HKLALEPDSP FL++GEDAVVFTIDLRQDRPAS
Sbjct: 301 ELINASYFNNTKCVAQHRGPAHKLALEPDSPYKFLTSGEDAVVFTIDLRQDRPASKVVVT 360
Query: 1305 XXXXXXXGLYTIYVNPANTHQFAVGGRDQFVRIYDQRKIDENENNGVLKKFCPHHLVNSE 1484
GLYTI VNPANT+QFAVGG+DQFVRIYDQRKID+ ENNGVLKKF PHHLVN +
Sbjct: 361 RENDKKVGLYTITVNPANTYQFAVGGQDQFVRIYDQRKIDKKENNGVLKKFTPHHLVNCD 420
Query: 1485 SKANITCLVYSHDGTELLASYNDEDIYLFNSSHSDGAQYIKRYKGHRNNATVKGVNFYGP 1664
NITC+VYSHDGTELLASYND+DIYLFNSSHSDGAQY KR+KGHRNN TVKGVNFYGP
Sbjct: 421 FPTNITCVVYSHDGTELLASYNDDDIYLFNSSHSDGAQYSKRFKGHRNNTTVKGVNFYGP 480
Query: 1665 KSEFVVSGSDCGHIFLWEKSSCQIIQFMEGDKGGVVNCLEPHPHLPVLATSGLDHDVKIW 1844
+SEFVVSGSDCGHIF WEKSSCQIIQF++G + G +NCLEPHP+LPVLA SGLDHDVKIW
Sbjct: 481 RSEFVVSGSDCGHIFFWEKSSCQIIQFLKGSREGTINCLEPHPYLPVLACSGLDHDVKIW 540
Query: 1845 APTAETSTELTGLKDVIKKNKRERDEDSLHHTDLFDSHMLWFLM 1976
PTA+ +TELTGLK VIKKNK ERDEDSLHH LFD +MLWFL+
Sbjct: 541 TPTAKAATELTGLKKVIKKNKWERDEDSLHHGSLFDQYMLWFLL 584
>ref|NP_001017930.1| DDB1- and CUL4-associated factor 8-like protein 1 [Homo sapiens].
Length = 600
Score = 702 bits (1812), Expect = 0.0
Identities = 365/600 (60%), Positives = 423/600 (70%), Gaps = 4/600 (0%)
Frame = +3
Query: 333 MSSKGSSTDGKTDLANGSLSSSPEEMSGAEEGRETSSGIEVEASDLSLSLTGD--DGG-P 503
MS + ST G DL SL SSPEE SG SS IE+ A++ S GD DGG
Sbjct: 1 MSHQEGSTGGLPDLVTESLFSSPEEQSGVAAVTAASSDIEMAATEPSTGDGGDTRDGGFL 60
Query: 504 NRTSTESRGTDTESSGEDKDSDSM-EDTGHYSINDENQVHDPSXXXXXXXXXXXXXXXXX 680
N STE++ TD+ESS ED + +SM E Y + E +
Sbjct: 61 NDASTENQNTDSESSSEDVELESMGEGLFGYPLVGEETEREEEEEEMEEEGEEEEQPRMC 120
Query: 681 XXXXXANRDQDSSDDERALEDWVASETSALPRPRWQALPALRERELGSSARFVYEACGAR 860
N DQ D+++ALE+W++SETSALPR RWQ L ALR+R+LGSSARFVYEACGAR
Sbjct: 121 PRCGGTNHDQCLLDEDQALEEWISSETSALPRSRWQVLTALRQRQLGSSARFVYEACGAR 180
Query: 861 VFVQRFRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDLKVVVWDWVRRQPVLDFESGHKS 1040
FVQRFRLQ+ L H G V+T+HFNQRGT LAS DDL+V+VWDWVR++PVL+FESGH
Sbjct: 181 TFVQRFRLQYLLGSHAGSVSTIHFNQRGTRLASSGDDLRVIVWDWVRQKPVLNFESGHDI 240
Query: 1041 NVFQAKFLPNSGDSTLAMCARDGQVRVAELSATQCCKNTKRVAQHKGASHKLALEPDSPC 1220
NV QAKF PN GDSTLAMC DGQVRVAEL C+NTKRVA+H+G +H+LALEPDSP
Sbjct: 241 NVIQAKFFPNCGDSTLAMCGHDGQVRVAELINASYCENTKRVAKHRGPAHELALEPDSPY 300
Query: 1221 TFLSAGEDAVVFTIDLRQDRPASXXXXXXXXXXXXGLYTIYVNPANTHQFAVGGRDQFVR 1400
FL++GEDAVVFTIDLRQDRPAS GLYTI +NPAN +QFAVGG DQFVR
Sbjct: 301 KFLTSGEDAVVFTIDLRQDRPASKVVVTRENDKKVGLYTISMNPANIYQFAVGGHDQFVR 360
Query: 1401 IYDQRKIDENENNGVLKKFCPHHLVNSESKANITCLVYSHDGTELLASYNDEDIYLFNSS 1580
IYDQR+ID+ ENNGVLKKF PHHLV + NITC+VYSHDGTELLASYNDEDIYLFNSS
Sbjct: 361 IYDQRRIDKKENNGVLKKFTPHHLVYCDFPTNITCVVYSHDGTELLASYNDEDIYLFNSS 420
Query: 1581 HSDGAQYIKRYKGHRNNATVKGVNFYGPKSEFVVSGSDCGHIFLWEKSSCQIIQFMEGDK 1760
SDGAQY+KRYKGHRNN T+K VNFYGP+SEFVVSGSDCGH+F WEKSS QIIQFMEGD+
Sbjct: 421 LSDGAQYVKRYKGHRNNDTIKCVNFYGPRSEFVVSGSDCGHVFFWEKSSSQIIQFMEGDR 480
Query: 1761 GGVVNCLEPHPHLPVLATSGLDHDVKIWAPTAETSTELTGLKDVIKKNKRERDEDSLHHT 1940
G +VNCLEPHP+LPVLATSGLD V+IW PTA+T+TELTGLKDVIKKNK+ERDED+L++T
Sbjct: 481 GDIVNCLEPHPYLPVLATSGLDQHVRIWTPTAKTATELTGLKDVIKKNKQERDEDNLNYT 540
Query: 1941 DLFDSHMLWFLMXXXXXXXXXXXXXEPGVGXXXXXXXXXXXXXXXXXXXXXXXRVQCMPS 2120
D FD+ ML F + + G RVQC+PS
Sbjct: 541 DSFDNRMLRFFVRHLLQRAHQPGWRDHGAEFPDEEELDESSSTSDTSEEEGQDRVQCIPS 600
>ref|NP_001185885.1| DDB1- and CUL4-associated factor 6 isoform c [Homo sapiens].
Length = 951
Score = 142 bits (359), Expect = 1e-33
Identities = 89/281 (31%), Positives = 137/281 (48%), Gaps = 12/281 (4%)
Frame = +3
Query: 801 LRERELG--SSARFVYEACGARVFVQRFRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDL 974
+R+R LG +R G R F+QR +L+ L H GCVNT+ +N G ++ SGSDD
Sbjct: 14 VRKRSLGLEDPSRLRSRYLGRREFIQRLKLEATLNVHDGCVNTICWNDTGEYILSGSDDT 73
Query: 975 KVVVWDWVRRQPVLDFESGHKSNVFQAKFLPNSGDSTLAMCARDGQVRVAELSATQCCKN 1154
K+V+ + R+ + SGH++N+F AKFLP + D + C+ DG + +
Sbjct: 74 KLVISNPYSRKVLTTIRSGHRANIFSAKFLPCTNDKQIVSCSGDGVIFYTNVEQDAETNR 133
Query: 1155 TKRVAQHKGASHKLALEPDSPCTFLSAGEDAVV--FTIDLRQDRPASXXXXXXXXXXXXG 1328
+ H G ++++ P+ P TFLS GED V F ++
Sbjct: 134 QCQFTCHYGTTYEIMTVPNDPYTFLSCGEDGTVRWFDTRIKTSCTKEDCKDDILINCRRA 193
Query: 1329 LYTIYVNPANTHQFAVGGRDQFVRIYDQRKIDENE--------NNGVLKKFCPHHLVNSE 1484
++ + P + AVG D VRIYD+R + G++ +F P HL N
Sbjct: 194 ATSVAICPPIPYYLAVGCSDSSVRIYDRRMLGTRATGNYAGRGTTGMVARFIPSHLNNKS 253
Query: 1485 SKANITCLVYSHDGTELLASYNDEDIYLFNSSHSDGAQYIK 1607
+ +T L YS DG E+L SY+ + IYLF+ D A+ +K
Sbjct: 254 CR--VTSLCYSEDGQEILVSYSSDYIYLFDPK-DDTARELK 291
Score = 102 bits (254), Expect = 2e-21
Identities = 51/106 (48%), Positives = 74/106 (69%), Gaps = 2/106 (1%)
Frame = +3
Query: 1611 YKGHRNNAT-VKGVNFYGPKSEFVVSGSDCGHIFLWEKSSCQIIQFMEGDKGGVVNCLEP 1787
YKGHRN+ T +K NF+G + FV+SGSDCGHIF+W++ + + + +E D VVNCL+P
Sbjct: 804 YKGHRNSRTMIKEANFWG--ANFVMSGSDCGHIFIWDRHTAEHLMLLEADNH-VVNCLQP 860
Query: 1788 HPHLPVLATSGLDHDVKIWAPTAETSTELTGLKD-VIKKNKRERDE 1922
HP P+LA+SG+D+D+KIW+P E+ L D VI +N+ +E
Sbjct: 861 HPFDPILASSGIDYDIKIWSPLEESRIFNRKLADEVITRNELMLEE 906
>ref|NP_001017977.1| DDB1- and CUL4-associated factor 6 isoform b [Homo sapiens].
Length = 860
Score = 142 bits (359), Expect = 1e-33
Identities = 89/281 (31%), Positives = 137/281 (48%), Gaps = 12/281 (4%)
Frame = +3
Query: 801 LRERELG--SSARFVYEACGARVFVQRFRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDL 974
+R+R LG +R G R F+QR +L+ L H GCVNT+ +N G ++ SGSDD
Sbjct: 14 VRKRSLGLEDPSRLRSRYLGRREFIQRLKLEATLNVHDGCVNTICWNDTGEYILSGSDDT 73
Query: 975 KVVVWDWVRRQPVLDFESGHKSNVFQAKFLPNSGDSTLAMCARDGQVRVAELSATQCCKN 1154
K+V+ + R+ + SGH++N+F AKFLP + D + C+ DG + +
Sbjct: 74 KLVISNPYSRKVLTTIRSGHRANIFSAKFLPCTNDKQIVSCSGDGVIFYTNVEQDAETNR 133
Query: 1155 TKRVAQHKGASHKLALEPDSPCTFLSAGEDAVV--FTIDLRQDRPASXXXXXXXXXXXXG 1328
+ H G ++++ P+ P TFLS GED V F ++
Sbjct: 134 QCQFTCHYGTTYEIMTVPNDPYTFLSCGEDGTVRWFDTRIKTSCTKEDCKDDILINCRRA 193
Query: 1329 LYTIYVNPANTHQFAVGGRDQFVRIYDQRKIDENE--------NNGVLKKFCPHHLVNSE 1484
++ + P + AVG D VRIYD+R + G++ +F P HL N
Sbjct: 194 ATSVAICPPIPYYLAVGCSDSSVRIYDRRMLGTRATGNYAGRGTTGMVARFIPSHLNNKS 253
Query: 1485 SKANITCLVYSHDGTELLASYNDEDIYLFNSSHSDGAQYIK 1607
+ +T L YS DG E+L SY+ + IYLF+ D A+ +K
Sbjct: 254 CR--VTSLCYSEDGQEILVSYSSDYIYLFDPK-DDTARELK 291
Score = 102 bits (254), Expect = 2e-21
Identities = 51/106 (48%), Positives = 74/106 (69%), Gaps = 2/106 (1%)
Frame = +3
Query: 1611 YKGHRNNAT-VKGVNFYGPKSEFVVSGSDCGHIFLWEKSSCQIIQFMEGDKGGVVNCLEP 1787
YKGHRN+ T +K NF+G + FV+SGSDCGHIF+W++ + + + +E D VVNCL+P
Sbjct: 713 YKGHRNSRTMIKEANFWG--ANFVMSGSDCGHIFIWDRHTAEHLMLLEADNH-VVNCLQP 769
Query: 1788 HPHLPVLATSGLDHDVKIWAPTAETSTELTGLKD-VIKKNKRERDE 1922
HP P+LA+SG+D+D+KIW+P E+ L D VI +N+ +E
Sbjct: 770 HPFDPILASSGIDYDIKIWSPLEESRIFNRKLADEVITRNELMLEE 815
>ref|NP_060912.2| DDB1- and CUL4-associated factor 6 isoform a [Homo sapiens].
Length = 880
Score = 142 bits (359), Expect = 1e-33
Identities = 89/281 (31%), Positives = 137/281 (48%), Gaps = 12/281 (4%)
Frame = +3
Query: 801 LRERELG--SSARFVYEACGARVFVQRFRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDL 974
+R+R LG +R G R F+QR +L+ L H GCVNT+ +N G ++ SGSDD
Sbjct: 14 VRKRSLGLEDPSRLRSRYLGRREFIQRLKLEATLNVHDGCVNTICWNDTGEYILSGSDDT 73
Query: 975 KVVVWDWVRRQPVLDFESGHKSNVFQAKFLPNSGDSTLAMCARDGQVRVAELSATQCCKN 1154
K+V+ + R+ + SGH++N+F AKFLP + D + C+ DG + +
Sbjct: 74 KLVISNPYSRKVLTTIRSGHRANIFSAKFLPCTNDKQIVSCSGDGVIFYTNVEQDAETNR 133
Query: 1155 TKRVAQHKGASHKLALEPDSPCTFLSAGEDAVV--FTIDLRQDRPASXXXXXXXXXXXXG 1328
+ H G ++++ P+ P TFLS GED V F ++
Sbjct: 134 QCQFTCHYGTTYEIMTVPNDPYTFLSCGEDGTVRWFDTRIKTSCTKEDCKDDILINCRRA 193
Query: 1329 LYTIYVNPANTHQFAVGGRDQFVRIYDQRKIDENE--------NNGVLKKFCPHHLVNSE 1484
++ + P + AVG D VRIYD+R + G++ +F P HL N
Sbjct: 194 ATSVAICPPIPYYLAVGCSDSSVRIYDRRMLGTRATGNYAGRGTTGMVARFIPSHLNNKS 253
Query: 1485 SKANITCLVYSHDGTELLASYNDEDIYLFNSSHSDGAQYIK 1607
+ +T L YS DG E+L SY+ + IYLF+ D A+ +K
Sbjct: 254 CR--VTSLCYSEDGQEILVSYSSDYIYLFDPK-DDTARELK 291
Score = 102 bits (254), Expect = 2e-21
Identities = 51/106 (48%), Positives = 74/106 (69%), Gaps = 2/106 (1%)
Frame = +3
Query: 1611 YKGHRNNAT-VKGVNFYGPKSEFVVSGSDCGHIFLWEKSSCQIIQFMEGDKGGVVNCLEP 1787
YKGHRN+ T +K NF+G + FV+SGSDCGHIF+W++ + + + +E D VVNCL+P
Sbjct: 733 YKGHRNSRTMIKEANFWG--ANFVMSGSDCGHIFIWDRHTAEHLMLLEADNH-VVNCLQP 789
Query: 1788 HPHLPVLATSGLDHDVKIWAPTAETSTELTGLKD-VIKKNKRERDE 1922
HP P+LA+SG+D+D+KIW+P E+ L D VI +N+ +E
Sbjct: 790 HPFDPILASSGIDYDIKIWSPLEESRIFNRKLADEVITRNELMLEE 835
>ref|NP_055838.2| WD and tetratricopeptide repeats protein 1 [Homo sapiens].
Length = 676
Score = 126 bits (316), Expect = 1e-28
Identities = 89/309 (28%), Positives = 138/309 (44%), Gaps = 44/309 (14%)
Frame = +3
Query: 864 FVQRFRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDLKVVVWDWVRRQPVLDFESGHKSN 1043
F++R L+ L+GH+GCVN L +N++G LASGSDD +VWD + + +L +GH +N
Sbjct: 33 FIRRLGLEAELQGHSGCVNCLEWNEKGDLLASGSDDQHTIVWDPLHHKKLLSMHTGHTAN 92
Query: 1044 VFQAKFLPNSGDSTLAMCARDGQVRVAELSATQCCKNTKRVAQHKGASHKLALEPDSPCT 1223
+F KFLP++GD L A D +V V +L+ + H ++A P P T
Sbjct: 93 IFSVKFLPHAGDRILITGAADSKVHVHDLTVKE---TIHMFGDHTNRVKRIATAPMWPNT 149
Query: 1224 FLSAGEDAVVFTIDLRQDRPASXXXXXXXXXXXXGLYT--IYVNPANTHQFAVGGRDQFV 1397
F SA ED ++ DLR++ S + + VNP + + AVG FV
Sbjct: 150 FWSAAEDGLIRQYDLRENSKHSEVLIDLTEYCGQLVEAKCLTVNPQDNNCLAVGASGPFV 209
Query: 1398 RIYDQRKIDENEN---------------------NGVLKKFCPHHL------VNSESKAN 1496
R+YD R I + +G + + HL N+ +
Sbjct: 210 RLYDIRMIHNHRKSMKQSPSAGVHTFCDRQKPLPDGAAQYYVAGHLPVKLPDYNNRLRVL 269
Query: 1497 I-TCLVYSHDGTELLASYNDEDIYLFN--------------SSHSDGAQYIKRYKGHRNN 1631
+ T + +S +GTELL + E +YLF+ HS G Q K +N
Sbjct: 270 VATYVTFSPNGTELLVNMGGEQVYLFDLTYKQRPYTFLLPRKCHSSGVQNGKMSTNGVSN 329
Query: 1632 ATVKGVNFY 1658
G++ +
Sbjct: 330 GVSNGLHLH 338
Score = 93.2 bits (230), Expect = 9e-19
Identities = 51/136 (37%), Positives = 82/136 (60%), Gaps = 6/136 (4%)
Frame = +3
Query: 1542 SYNDEDIYLFNSSHSDGAQYIKRYKGHRNNAT-VKGVNFYGPKSEFVVSGSDCGHIFLWE 1718
S +++++ L S+ Y RY GH N T +K NF+G ++++VSGSD G F+WE
Sbjct: 510 SISEDEMVLRERSYD----YQFRYCGHCNTTTDIKEANFFGSNAQYIVSGSDDGSFFIWE 565
Query: 1719 KSSCQIIQFMEGDKGGVVNCLEPHPHLPVLATSGLDHDVKIWAPTAETSTELTG-----L 1883
K + +++ ++GD+ +VNCL+PHP LATSG+D V++W P E S +LTG +
Sbjct: 566 KETTNLVRVLQGDE-SIVNCLQPHPSYCFLATSGIDPVVRLWNPRPE-SEDLTGRVVEDM 623
Query: 1884 KDVIKKNKRERDEDSL 1931
+ + N+R + D L
Sbjct: 624 EGASQANQRRMNADPL 639
>ref|NP_001185886.1| DDB1- and CUL4-associated factor 6 isoform d [Homo sapiens].
Length = 920
Score = 105 bits (261), Expect = 2e-22
Identities = 78/281 (27%), Positives = 117/281 (41%), Gaps = 12/281 (4%)
Frame = +3
Query: 801 LRERELG--SSARFVYEACGARVFVQRFRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDL 974
+R+R LG +R G R F+QR +L+ L H GCV T
Sbjct: 14 VRKRSLGLEDPSRLRSRYLGRREFIQRLKLEATLNVHDGCVLTT---------------- 57
Query: 975 KVVVWDWVRRQPVLDFESGHKSNVFQAKFLPNSGDSTLAMCARDGQVRVAELSATQCCKN 1154
SGH++N+F AKFLP + D + C+ DG + +
Sbjct: 58 ---------------IRSGHRANIFSAKFLPCTNDKQIVSCSGDGVIFYTNVEQDAETNR 102
Query: 1155 TKRVAQHKGASHKLALEPDSPCTFLSAGEDAVV--FTIDLRQDRPASXXXXXXXXXXXXG 1328
+ H G ++++ P+ P TFLS GED V F ++
Sbjct: 103 QCQFTCHYGTTYEIMTVPNDPYTFLSCGEDGTVRWFDTRIKTSCTKEDCKDDILINCRRA 162
Query: 1329 LYTIYVNPANTHQFAVGGRDQFVRIYDQRKIDENE--------NNGVLKKFCPHHLVNSE 1484
++ + P + AVG D VRIYD+R + G++ +F P HL N
Sbjct: 163 ATSVAICPPIPYYLAVGCSDSSVRIYDRRMLGTRATGNYAGRGTTGMVARFIPSHLNNKS 222
Query: 1485 SKANITCLVYSHDGTELLASYNDEDIYLFNSSHSDGAQYIK 1607
+ +T L YS DG E+L SY+ + IYLF+ D A+ +K
Sbjct: 223 CR--VTSLCYSEDGQEILVSYSSDYIYLFDPK-DDTARELK 260
Score = 102 bits (254), Expect = 2e-21
Identities = 51/106 (48%), Positives = 74/106 (69%), Gaps = 2/106 (1%)
Frame = +3
Query: 1611 YKGHRNNAT-VKGVNFYGPKSEFVVSGSDCGHIFLWEKSSCQIIQFMEGDKGGVVNCLEP 1787
YKGHRN+ T +K NF+G + FV+SGSDCGHIF+W++ + + + +E D VVNCL+P
Sbjct: 773 YKGHRNSRTMIKEANFWG--ANFVMSGSDCGHIFIWDRHTAEHLMLLEADNH-VVNCLQP 829
Query: 1788 HPHLPVLATSGLDHDVKIWAPTAETSTELTGLKD-VIKKNKRERDE 1922
HP P+LA+SG+D+D+KIW+P E+ L D VI +N+ +E
Sbjct: 830 HPFDPILASSGIDYDIKIWSPLEESRIFNRKLADEVITRNELMLEE 875
>ref|NP_003852.1| DDB1- and CUL4-associated factor 5 [Homo sapiens].
Length = 942
Score = 97.4 bits (241), Expect = 5e-20
Identities = 84/334 (25%), Positives = 156/334 (46%), Gaps = 15/334 (4%)
Frame = +3
Query: 894 LEGHTGCVNTLHF-NQRGTWLASGSDDLKVVVWDWVR----RQPVLDFESGHKSNVFQAK 1058
L GH GCVN + F N G WL SG DD +V++W + R + + H SN+F
Sbjct: 49 LLGHFGCVNAIEFSNNGGQWLVSGGDDRRVLLWHMEQAIHSRVKPIQLKGEHHSNIFCLA 108
Query: 1059 FLPNSGDSTLAMCARDGQVRVAELSATQCCKNTKRVAQHKGASHKLALEPDSPCTFLSAG 1238
F NSG++ + D QV + ++ +++ T V H+ A + L++ P + F S+
Sbjct: 109 F--NSGNTKVFSGGNDEQVILHDVESSE----TLDVFAHEDAVYGLSVSPVNDNIFASSS 162
Query: 1239 EDAVVFTIDLRQDRPASXXXXXXXXXXXXGLYTIYVNPANTHQFAVGGRDQFVRIYDQRK 1418
+D V D+R+ + +++ NP A + V ++D RK
Sbjct: 163 DDGRVLIWDIRE---SPHGEPFCLANYPSAFHSVMFNPVEPRLLATANSKEGVGLWDIRK 219
Query: 1419 IDENENNGVLKKFCPHHLVNSESKANITCLVYSHDGTELLASYNDEDIYLFNSSHSDGAQ 1598
+ L ++ + + S ++ +GT+LLA L++ HS
Sbjct: 220 PQSS-----LLRYGGNLSLQSAMSVR-----FNSNGTQLLALRRRLPPVLYDI-HSRLPV 268
Query: 1599 YIKRYKGHRNNATVKGVNFYGPKSEFVVSGSDCGHIFLW----EKSSCQIIQFMEGD--- 1757
+ +G+ N+ T+K F G + ++++SGSD ++++W + + I + + G
Sbjct: 269 FQFDNQGYFNSCTMKSCCFAGDRDQYILSGSDDFNLYMWRIPADPEAGGIGRVVNGAFMV 328
Query: 1758 -KG--GVVNCLEPHPHLPVLATSGLDHDVKIWAP 1850
KG +VN + +PH ++ +SG++ +KIW+P
Sbjct: 329 LKGHRSIVNQVRFNPHTYMICSSGVEKIIKIWSP 362
>ref|NP_438172.1| WD repeat-containing protein 5 [Homo sapiens].
Length = 334
Score = 69.7 bits (169), Expect = 1e-11
Identities = 76/333 (22%), Positives = 142/333 (42%), Gaps = 10/333 (3%)
Frame = +3
Query: 876 FRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDLKVVVWDWVRRQPVLDFE---SGHKSNV 1046
+ L+ L GHT V+++ F+ G WLAS S D + +W + FE SGHK +
Sbjct: 35 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK----FEKTISGHKLGI 90
Query: 1047 FQAKFLPNSGDSTLAMCARDGQ-VRVAELSATQCCKNTKRVAQHKGASHKLALEPDSPCT 1223
+ S DS L + A D + +++ ++S+ +C K K H P S
Sbjct: 91 SDVAW---SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKG---HSNYVFCCNFNPQSNLI 144
Query: 1224 FLSAGEDAV----VFTIDLRQDRPASXXXXXXXXXXXXGLYTIYVNPANTHQFAVGGRDQ 1391
+ +++V V T + PA G + D
Sbjct: 145 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS-----------SSYDG 193
Query: 1392 FVRIYDQRKIDENENNGVLKKFCPHHLVNSESKANITCLVYSHDGTELLASYNDEDIYLF 1571
RI+D C L++ ++ ++ + +S +G +LA+ D + L+
Sbjct: 194 LCRIWDTASGQ-----------CLKTLIDDDNPP-VSFVKFSPNGKYILAATLDNTLKLW 241
Query: 1572 NSSHSDGAQYIKRYKGHRNNATVKGVNFYGPKSEFVVSGSDCGHIFLWEKSSCQIIQFME 1751
+ S + +K Y GH+N NF +++VSGS+ +++W + +I+Q ++
Sbjct: 242 DYSKG---KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 298
Query: 1752 GDKGGVVNCLEPHPHLPVLATSGLDHD--VKIW 1844
G V++ HP ++A++ L++D +K+W
Sbjct: 299 GHTDVVIS-TACHPTENIIASAALENDKTIKLW 330
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 87,929,135
Number of extensions: 2494834
Number of successful extensions: 11125
Number of sequences better than 1.0e-05: 16
Number of HSP's gapped: 10962
Number of HSP's successfully gapped: 23
Length of query: 755
Length of database: 18,297,164
Length adjustment: 110
Effective length of query: 645
Effective length of database: 14,671,124
Effective search space: 9462874980
Effective search space used: 9462874980
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007192
(2267 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_705783.1| DDB1- and CUL4-associated factor 8 [Mus musculu... 1016 0.0
Alignment gi|NP_032847.2| plasmacytoma expressed transcript 2 [Mus muscul... 624 e-178
Alignment gi|NP_083035.1| DDB1- and CUL4-associated factor 6 [Mus musculu... 143 7e-34
Alignment gi|NP_955010.1| WD and tetratricopeptide repeats protein 1 [Mus... 127 4e-29
Alignment gi|NP_796241.3| DDB1- and CUL4-associated factor 5 [Mus musculu... 97 4e-20
Alignment gi|NP_543124.1| WD repeat-containing protein 5 [Mus musculus]. 70 9e-12
Alignment gi|NP_081389.1| WD repeat-containing protein 5B [Mus musculus]. 63 1e-09
Alignment gi|NP_084172.1| WD repeat-containing protein 82 [Mus musculus]. 62 1e-09
Alignment gi|NP_079921.2| U5 small nuclear ribonucleoprotein 40 kDa prote... 50 1e-05
>ref|NP_705783.1| DDB1- and CUL4-associated factor 8 [Mus musculus].
Length = 591
Score = 1016 bits (2628), Expect = 0.0
Identities = 506/595 (85%), Positives = 519/595 (87%)
Frame = +3
Query: 336 SSKGSSTDGKTDLANGSLSSSPEEMSGAEEGRETSSGIEVEASDLSLSLTGDDGGPNRTS 515
+ + ++TDG+TDLANGSLSSSPEEMSGAEEGRETSSGIEVEASDLSLSLTGDDGGPNRTS
Sbjct: 3 NKRPNTTDGRTDLANGSLSSSPEEMSGAEEGRETSSGIEVEASDLSLSLTGDDGGPNRTS 62
Query: 516 TESRGTDTESSGEDKDSDSMEDTGHYSINDENQVHDPSXXXXXXXXXXXXXXXXXXXXXX 695
TESRGTDTESSGE+KDSDSMEDTGHYSINDE++ H S
Sbjct: 63 TESRGTDTESSGEEKDSDSMEDTGHYSINDESRGHGHSDEEDEEQPRHRGQRKR------ 116
Query: 696 ANRDQDSSDDERALEDWVASETSALPRPRWQALPALRERELGSSARFVYEACGARVFVQR 875
A+RDQDSSDDERALEDWV+SET+ALPRPRWQALPALRERELGSSARFVYEACGARVFVQR
Sbjct: 117 ASRDQDSSDDERALEDWVSSETTALPRPRWQALPALRERELGSSARFVYEACGARVFVQR 176
Query: 876 FRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDLKVVVWDWVRRQPVLDFESGHKSNVFQA 1055
FRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDLKVVVWDWVRRQPVLDFESGHKSNVFQA
Sbjct: 177 FRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDLKVVVWDWVRRQPVLDFESGHKSNVFQA 236
Query: 1056 KFLPNSGDSTLAMCARDGQVRVAELSATQCCKNTKRVAQHKGASHKLALEPDSPCTFLSA 1235
KFLPNSGDSTLAMCARDGQVRVAELSATQCCKNTKRVAQHKGASHKLALEPDSPCTFLSA
Sbjct: 237 KFLPNSGDSTLAMCARDGQVRVAELSATQCCKNTKRVAQHKGASHKLALEPDSPCTFLSA 296
Query: 1236 GEDAVVFTIDLRQDRPASXXXXXXXXXXXXGLYTIYVNPANTHQFAVGGRDQFVRIYDQR 1415
GEDAVVFTIDLRQDRPAS GLYTIYVNPANTHQFAVGGRDQ+VRIYDQR
Sbjct: 297 GEDAVVFTIDLRQDRPASKLVVTKEKEKKVGLYTIYVNPANTHQFAVGGRDQYVRIYDQR 356
Query: 1416 KIDENENNGVLKKFCPHHLVNSESKANITCLVYSHDGTELLASYNDEDIYLFNSSHSDGA 1595
KIDENENNGVLKKFCPHHLVNSESKANITCLVYSHDGTELLASYNDEDIYLFNSSHSDGA
Sbjct: 357 KIDENENNGVLKKFCPHHLVNSESKANITCLVYSHDGTELLASYNDEDIYLFNSSHSDGA 416
Query: 1596 QYIKRYKGHRNNATVKGVNFYGPKSEFVVSGSDCGHIFLWEKSSCQIIQFMEGDKGGVVN 1775
QYIKRYKGHRNNATVKGVNFYGPKSEFVVSGSDCGHIFLWEKSSCQIIQFMEGDKGGVVN
Sbjct: 417 QYIKRYKGHRNNATVKGVNFYGPKSEFVVSGSDCGHIFLWEKSSCQIIQFMEGDKGGVVN 476
Query: 1776 CLEPHPHLPVLATSGLDHDVKIWAPTAETSTELTGLKDVIKKNKRERDEDSLHHTDLFDS 1955
CLEPHPHLPVLATSGLDHDVKIWAPTAE STELTGLK+VIKKNKRERDEDSLHHTDLFDS
Sbjct: 477 CLEPHPHLPVLATSGLDHDVKIWAPTAEASTELTGLKEVIKKNKRERDEDSLHHTDLFDS 536
Query: 1956 HMLWFLMXXXXXXXXXXXXXEPGVGXXXXXXXXXXXXXXXXXXXXXXXRVQCMPS 2120
HMLWFLM EPGVG RVQCMPS
Sbjct: 537 HMLWFLMHHLRQRRHHRRWREPGVGATDADSDESPSSSDTSDEEEGPDRVQCMPS 591
>ref|NP_032847.2| plasmacytoma expressed transcript 2 [Mus musculus].
Length = 747
Score = 624 bits (1609), Expect = e-178
Identities = 291/424 (68%), Positives = 353/424 (83%)
Frame = +3
Query: 705 DQDSSDDERALEDWVASETSALPRPRWQALPALRERELGSSARFVYEACGARVFVQRFRL 884
+Q +D+ +++W+A ETS LPRPRW L ALR+R+LGSS RFVYEACGAR+FVQRF L
Sbjct: 286 EQYDIEDDSLIDEWIALETSPLPRPRWNVLSALRDRQLGSSGRFVYEACGARLFVQRFSL 345
Query: 885 QHGLEGHTGCVNTLHFNQRGTWLASGSDDLKVVVWDWVRRQPVLDFESGHKSNVFQAKFL 1064
+H EGH+GCVNT+HFNQ GT LASGSDDLKV+VWDW++++ VL+F+SGHK+N+ QAKFL
Sbjct: 346 EHVFEGHSGCVNTVHFNQHGTLLASGSDDLKVIVWDWLKKRSVLNFDSGHKNNILQAKFL 405
Query: 1065 PNSGDSTLAMCARDGQVRVAELSATQCCKNTKRVAQHKGASHKLALEPDSPCTFLSAGED 1244
PN D+ LAMC RDGQVRVA+LSA TKR+ +H GASH+L LEPDSP FL++GED
Sbjct: 406 PNCNDAILAMCGRDGQVRVAQLSAVAGTHMTKRLVKHGGASHRLGLEPDSPFRFLTSGED 465
Query: 1245 AVVFTIDLRQDRPASXXXXXXXXXXXXGLYTIYVNPANTHQFAVGGRDQFVRIYDQRKID 1424
AVVF IDLRQ PAS GLYT++VNPAN +QFAVGG+DQF+RIYDQRKID
Sbjct: 466 AVVFNIDLRQAHPASKLLVIKDGDKKVGLYTVFVNPANVYQFAVGGQDQFMRIYDQRKID 525
Query: 1425 ENENNGVLKKFCPHHLVNSESKANITCLVYSHDGTELLASYNDEDIYLFNSSHSDGAQYI 1604
EN NNGVLKKFCPHHL++S+ A+IT L+YS+DGTE+LASYNDEDIY+FNSS SDGAQY
Sbjct: 526 ENVNNGVLKKFCPHHLLSSDYPAHITSLMYSYDGTEILASYNDEDIYIFNSSDSDGAQYA 585
Query: 1605 KRYKGHRNNATVKGVNFYGPKSEFVVSGSDCGHIFLWEKSSCQIIQFMEGDKGGVVNCLE 1784
KRYKGHRNN+TVKGV FYGP+SEFV+SGSDCGHIF+WEKSSCQI+QF+E D+GG +NC++
Sbjct: 586 KRYKGHRNNSTVKGVYFYGPRSEFVMSGSDCGHIFIWEKSSCQIVQFLEADEGGTINCID 645
Query: 1785 PHPHLPVLATSGLDHDVKIWAPTAETSTELTGLKDVIKKNKRERDEDSLHHTDLFDSHML 1964
HP+LPVLA+SGLDH+VKIW+P AE S +L GLK+VIK NK +RD +L HT LF++ ML
Sbjct: 646 SHPYLPVLASSGLDHEVKIWSPIAEPSKKLAGLKNVIKINKLKRDNFTLRHTSLFNNSML 705
Query: 1965 WFLM 1976
FLM
Sbjct: 706 CFLM 709
>ref|NP_083035.1| DDB1- and CUL4-associated factor 6 [Mus musculus].
Length = 876
Score = 143 bits (360), Expect = 7e-34
Identities = 89/281 (31%), Positives = 137/281 (48%), Gaps = 12/281 (4%)
Frame = +3
Query: 801 LRERELG--SSARFVYEACGARVFVQRFRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDL 974
+R+R LG +R G R F+QR +L+ L H GCVNT+ +N G ++ SGSDD
Sbjct: 14 VRKRSLGLEDPSRLRSRYLGRREFIQRLKLEATLNVHDGCVNTICWNDTGEYILSGSDDT 73
Query: 975 KVVVWDWVRRQPVLDFESGHKSNVFQAKFLPNSGDSTLAMCARDGQVRVAELSATQCCKN 1154
K+V+ + R+ + SGH++N+F AKFLP + D + C+ DG + +
Sbjct: 74 KLVISNPYSRKVLTTIRSGHRANIFSAKFLPCTDDKQIVSCSGDGVIFYTNIEQDAETNR 133
Query: 1155 TKRVAQHKGASHKLALEPDSPCTFLSAGEDAVV--FTIDLRQDRPASXXXXXXXXXXXXG 1328
+ H G ++++ P+ P TFLS GED V F ++
Sbjct: 134 QCQFTCHYGTTYEIMTVPNDPYTFLSCGEDGTVRWFDTRIKTSCTKEDCKDDILINCRRA 193
Query: 1329 LYTIYVNPANTHQFAVGGRDQFVRIYDQRKIDENE--------NNGVLKKFCPHHLVNSE 1484
++ + P + AVG D VRIYD+R + G++ +F P HL N
Sbjct: 194 ATSVAICPPVPYYLAVGCSDSSVRIYDRRMLGTRATGNYAGRGTTGMVARFIPSHLSNKS 253
Query: 1485 SKANITCLVYSHDGTELLASYNDEDIYLFNSSHSDGAQYIK 1607
+ +T L YS DG E+L SY+ + IYLF+ D A+ +K
Sbjct: 254 CR--VTSLCYSEDGQEILVSYSSDYIYLFDPK-DDTARELK 291
Score = 102 bits (254), Expect = 1e-21
Identities = 51/106 (48%), Positives = 74/106 (69%), Gaps = 2/106 (1%)
Frame = +3
Query: 1611 YKGHRNNAT-VKGVNFYGPKSEFVVSGSDCGHIFLWEKSSCQIIQFMEGDKGGVVNCLEP 1787
YKGHRN+ T +K NF+G + FV+SGSDCGHIF+W++ + + + +E D VVNCL+P
Sbjct: 729 YKGHRNSRTMIKEANFWG--ANFVMSGSDCGHIFIWDRHTAEHLMLLEADNH-VVNCLQP 785
Query: 1788 HPHLPVLATSGLDHDVKIWAPTAETSTELTGLKD-VIKKNKRERDE 1922
HP P+LA+SG+D+D+KIW+P E+ L D VI +N+ +E
Sbjct: 786 HPFDPILASSGIDYDIKIWSPLEESRIFNRKLADEVITRNELMLEE 831
>ref|NP_955010.1| WD and tetratricopeptide repeats protein 1 [Mus musculus].
Length = 677
Score = 127 bits (319), Expect = 4e-29
Identities = 83/270 (30%), Positives = 129/270 (47%), Gaps = 30/270 (11%)
Frame = +3
Query: 864 FVQRFRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDLKVVVWDWVRRQPVLDFESGHKSN 1043
F++R L+ L+GH+GCVN L +N++G LASGSDD +VWD + + +L +GH +N
Sbjct: 33 FIRRLGLEAELQGHSGCVNCLEWNEKGDLLASGSDDQHTIVWDPLHHKKLLSMHTGHTAN 92
Query: 1044 VFQAKFLPNSGDSTLAMCARDGQVRVAELSATQCCKNTKRVAQHKGASHKLALEPDSPCT 1223
+F KFLP++GD L A D +V V +L+ + H ++A P P T
Sbjct: 93 IFSVKFLPHAGDRILITGAADSKVHVHDLTVKE---TIHMFGDHTNRVKRIATAPMWPNT 149
Query: 1224 FLSAGEDAVVFTIDLRQDRPASXXXXXXXXXXXXGLYT--IYVNPANTHQFAVGGRDQFV 1397
F SA ED ++ DLR++ S + + VNP + + AVG FV
Sbjct: 150 FWSAAEDGLIRQYDLRENSKHSEVLIDLTEYCGPMVEAKCLTVNPQDNNCLAVGASGPFV 209
Query: 1398 RIYDQRKIDENEN---------------------NGVLKKFCPHHL------VNSESKAN 1496
R+YD R I + +G + + HL NS +
Sbjct: 210 RLYDIRMIHNHRKSMRQSPSAGVHTFCDRQKPLPDGAAQYYVAGHLPVKLPDYNSRLRVL 269
Query: 1497 I-TCLVYSHDGTELLASYNDEDIYLFNSSH 1583
+ T + +S +GTELL + E +YLF+ ++
Sbjct: 270 VATYVTFSPNGTELLVNMGGEQVYLFDLTY 299
Score = 91.7 bits (226), Expect = 2e-18
Identities = 47/114 (41%), Positives = 73/114 (64%), Gaps = 1/114 (0%)
Frame = +3
Query: 1542 SYNDEDIYLFNSSHSDGAQYIKRYKGHRNNAT-VKGVNFYGPKSEFVVSGSDCGHIFLWE 1718
S +++++ L S+ Y RY GH N T +K NF+G ++++VSGSD G F+WE
Sbjct: 511 SISEDEMVLRERSYD----YQFRYCGHCNTTTDIKEANFFGSNAQYIVSGSDDGSFFIWE 566
Query: 1719 KSSCQIIQFMEGDKGGVVNCLEPHPHLPVLATSGLDHDVKIWAPTAETSTELTG 1880
K + +++ ++GD+ +VNCL+PHP LATSG+D V++W P E S +LTG
Sbjct: 567 KETTNLVRVLQGDE-SIVNCLQPHPSYCFLATSGIDPVVRLWNPRPE-SEDLTG 618
>ref|NP_796241.3| DDB1- and CUL4-associated factor 5 [Mus musculus].
Length = 946
Score = 97.4 bits (241), Expect = 4e-20
Identities = 84/334 (25%), Positives = 156/334 (46%), Gaps = 15/334 (4%)
Frame = +3
Query: 894 LEGHTGCVNTLHF-NQRGTWLASGSDDLKVVVWDWVR----RQPVLDFESGHKSNVFQAK 1058
L GH GCVN + F N G WL SG DD +V++W + R + + H SN+F
Sbjct: 49 LLGHFGCVNAIEFSNNGGQWLVSGGDDRRVLLWHMEQAIHSRVKPIQLKGEHHSNIFCLA 108
Query: 1059 FLPNSGDSTLAMCARDGQVRVAELSATQCCKNTKRVAQHKGASHKLALEPDSPCTFLSAG 1238
F NSG++ + D QV + ++ +++ T V H+ A + L++ P + F S+
Sbjct: 109 F--NSGNTKVFSGGNDEQVILHDVESSE----TLDVFAHEDAVYGLSVSPVNDNIFASSS 162
Query: 1239 EDAVVFTIDLRQDRPASXXXXXXXXXXXXGLYTIYVNPANTHQFAVGGRDQFVRIYDQRK 1418
+D V D+R+ + +++ NP A + V ++D RK
Sbjct: 163 DDGRVLIWDIRE---SPHGEPFCLANYPSAFHSVMFNPVEPRLLATANSKEGVGLWDIRK 219
Query: 1419 IDENENNGVLKKFCPHHLVNSESKANITCLVYSHDGTELLASYNDEDIYLFNSSHSDGAQ 1598
+ L ++ + + S ++ +GT+LLA L++ HS
Sbjct: 220 PQSS-----LLRYGGNLSLQSAMSVR-----FNSNGTQLLALRRRLPPVLYDI-HSRLPV 268
Query: 1599 YIKRYKGHRNNATVKGVNFYGPKSEFVVSGSDCGHIFLW----EKSSCQIIQFMEGD--- 1757
+ +G+ N+ T+K F G + ++++SGSD ++++W + + I + + G
Sbjct: 269 FQFDNQGYFNSCTMKSCCFAGDRDQYILSGSDDFNLYMWKIPADPEAGGIGRVVNGAFMV 328
Query: 1758 -KG--GVVNCLEPHPHLPVLATSGLDHDVKIWAP 1850
KG +VN + +PH ++ +SG++ +KIW+P
Sbjct: 329 LKGHRSIVNQVRFNPHTYMICSSGVEKIIKIWSP 362
>ref|NP_543124.1| WD repeat-containing protein 5 [Mus musculus].
Length = 334
Score = 69.7 bits (169), Expect = 9e-12
Identities = 76/333 (22%), Positives = 142/333 (42%), Gaps = 10/333 (3%)
Frame = +3
Query: 876 FRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDLKVVVWDWVRRQPVLDFE---SGHKSNV 1046
+ L+ L GHT V+++ F+ G WLAS S D + +W + FE SGHK +
Sbjct: 35 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK----FEKTISGHKLGI 90
Query: 1047 FQAKFLPNSGDSTLAMCARDGQ-VRVAELSATQCCKNTKRVAQHKGASHKLALEPDSPCT 1223
+ S DS L + A D + +++ ++S+ +C K K H P S
Sbjct: 91 SDVAW---SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKG---HSNYVFCCNFNPQSNLI 144
Query: 1224 FLSAGEDAV----VFTIDLRQDRPASXXXXXXXXXXXXGLYTIYVNPANTHQFAVGGRDQ 1391
+ +++V V T + PA G + D
Sbjct: 145 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS-----------SSYDG 193
Query: 1392 FVRIYDQRKIDENENNGVLKKFCPHHLVNSESKANITCLVYSHDGTELLASYNDEDIYLF 1571
RI+D C L++ ++ ++ + +S +G +LA+ D + L+
Sbjct: 194 LCRIWDTASGQ-----------CLKTLIDDDNPP-VSFVKFSPNGKYILAATLDNTLKLW 241
Query: 1572 NSSHSDGAQYIKRYKGHRNNATVKGVNFYGPKSEFVVSGSDCGHIFLWEKSSCQIIQFME 1751
+ S + +K Y GH+N NF +++VSGS+ +++W + +I+Q ++
Sbjct: 242 DYSKG---KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 298
Query: 1752 GDKGGVVNCLEPHPHLPVLATSGLDHD--VKIW 1844
G V++ HP ++A++ L++D +K+W
Sbjct: 299 GHTDVVIS-TACHPTENIIASAALENDKTIKLW 330
>ref|NP_081389.1| WD repeat-containing protein 5B [Mus musculus].
Length = 328
Score = 62.8 bits (151), Expect = 1e-09
Identities = 73/357 (20%), Positives = 148/357 (41%), Gaps = 5/357 (1%)
Frame = +3
Query: 792 LPALRERELGSSARFVYEACGARVFVQRFRLQHGLEGHTGCVNTLHFNQRGTWLASGSDD 971
LPA R + L S+ R E + L+ L GH+ ++++ F+ G WLAS + D
Sbjct: 6 LPAERAQSLLSAPRREEEPQKPN-----YALRLTLAGHSAAISSVKFSPNGEWLASSAAD 60
Query: 972 LKVVVW---DWVRRQPVLDFESGHKSNVFQAKFLPNSGDSTLAMCARDGQVRVAELSATQ 1142
+++W D ++ + GH + + +S S L + D ++V ++ + +
Sbjct: 61 ALIIIWGAYDGNCKKTLY----GHSLEISDVAW--SSDSSRLVSASDDKTLKVWDMRSGK 114
Query: 1143 CCKNTKRVAQHKGASHKLALEPDSPCTFLSAGEDAVVFTIDLRQDRPASXXXXXXXXXXX 1322
C K K + + + P + +G F ++ +
Sbjct: 115 CLKTLKG-----HSDFVFCCDFNPPSNLIVSGS----FDESVKIWEVKTGKCLKTLSAHS 165
Query: 1323 XGLYTIYVNPANTHQFAVGGRDQFVRIYDQRKIDENENNGVLKKFCPHHLVNSESKANIT 1502
+ + N N G D RI+D C L + E ++
Sbjct: 166 DPISAVNFN-CNGSLIVSGSYDGLCRIWDAASGQ-----------CLRTLAD-EGNPPVS 212
Query: 1503 CLVYSHDGTELLASYNDEDIYLFNSSHSDGAQYIKRYKGHRNNATVKGVNFYGPKSEFVV 1682
+ +S +G +L + D + L++ S + +K Y GH+N +F ++VV
Sbjct: 213 FVKFSPNGKYILTATLDNTLKLWDYSRG---RCLKTYTGHKNEKYCLFASFSVTGRKWVV 269
Query: 1683 SGSDCGHIFLWEKSSCQIIQFMEGDKGGVVNCLEPHPHLPVLATSGLDHD--VKIWA 1847
SGS+ +++W + +I+Q ++G V++ HP ++A++ L++D +K+W+
Sbjct: 270 SGSEDNMVYIWNLQTKEIVQRLQGHTDVVISA-ACHPTKNIIASAALENDKTIKVWS 325
>ref|NP_084172.1| WD repeat-containing protein 82 [Mus musculus].
Length = 313
Score = 62.4 bits (150), Expect = 1e-09
Identities = 74/338 (21%), Positives = 131/338 (38%), Gaps = 7/338 (2%)
Frame = +3
Query: 867 VQRFRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDLKVVVWDWVRRQPVLDFESGHKSNV 1046
++ FR+ ++ +N F+ G + S SDD +V++D +P S K V
Sbjct: 8 LRSFRVAKVFRENSDKINCFDFSPNGETVISSSDDDSIVLYDCQEGKPKRTLYS-KKYGV 66
Query: 1047 FQAKFLPNSGDSTLAMCARDGQVRVAELSATQCCKNTKRVAQHKGASHKLALEPDSPC-- 1220
++ + + D +R L + K + G S ++ SP
Sbjct: 67 DLIRYTHAANTVVYSSNKIDDTIRYLSLH------DNKYIRYFPGHSKRVVALSMSPVDD 120
Query: 1221 TFLSAGEDAVVFTIDLRQDRPASXXXXXXXXXXXXGLYTIYVNPANTHQ-----FAVGGR 1385
TF+S D + DLR GL + P + FA G
Sbjct: 121 TFISGSLDKTIRLWDLRSPN-------------CQGLMHLQGKPVCSFDPEGLIFAAGVN 167
Query: 1386 DQFVRIYDQRKIDENENNGVLKKFCPHHLVNSESKANITCLVYSHDGTELLASYNDEDIY 1565
+ V++YD R D+ G F + + T L +S+DG +L S N I
Sbjct: 168 SEMVKLYDLRSFDK----GPFATFKMQY----DRTCEWTGLKFSNDGKLILISTNGSFIR 219
Query: 1566 LFNSSHSDGAQYIKRYKGHRNNATVKGVNFYGPKSEFVVSGSDCGHIFLWEKSSCQIIQF 1745
L ++ + + G+ N+ V + P S+F++ GS+ G I +W S +
Sbjct: 220 LIDAFKG---VVMHTFGGYANSKAVTLEASFTPDSQFIMIGSEDGKIHVWNGESGIKVAV 276
Query: 1746 MEGDKGGVVNCLEPHPHLPVLATSGLDHDVKIWAPTAE 1859
++G G + CL+ +P A++ ++ W PT +
Sbjct: 277 LDGKHTGPITCLQFNPKFMTFASA--CSNMAFWLPTID 312
>ref|NP_079921.2| U5 small nuclear ribonucleoprotein 40 kDa protein [Mus musculus].
Length = 358
Score = 49.7 bits (117), Expect = 1e-05
Identities = 66/279 (23%), Positives = 116/279 (41%), Gaps = 4/279 (1%)
Frame = +3
Query: 894 LEGHTGCVNTLHFNQRGTWLASGSDDLKVVVWDWVRRQPVLDFESGHKSNVFQAKFLPNS 1073
L+GH+G V LH+N G+ L S S D V VWD + V + GH S V + +
Sbjct: 106 LKGHSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLK-GHTSFV-NSCYPARR 163
Query: 1074 GDSTLAMCARDGQVRVAEL---SATQCCKNTKRVAQHKGASHKLALE-PDSPCTFLSAGE 1241
G + + DG V++ ++ +A Q +NT +V LA+ D+ +S G
Sbjct: 164 GPQLVCTGSDDGTVKLWDIRKKAAVQTFQNTYQV---------LAVTFNDTSDQIISGGI 214
Query: 1242 DAVVFTIDLRQDRPASXXXXXXXXXXXXGLYTIYVNPANTHQFAVGGRDQFVRIYDQRKI 1421
D + DLRQ++ L + D VR++D R
Sbjct: 215 DNDIKVWDLRQNKLTYTMRGHADSVTGLSL------SSEGSYLLSNAMDNTVRVWDVRPF 268
Query: 1422 DENENNGVLKKFCPHHLVNSESKANITCLVYSHDGTELLASYNDEDIYLFNSSHSDGAQY 1601
E K ++ N E N+ +S DG+++ A D +Y+++++ +
Sbjct: 269 APKER---CVKIFQGNVHNFEK--NLLRCSWSPDGSKIAAGSADRFVYVWDTT---SRRV 320
Query: 1602 IKRYKGHRNNATVKGVNFYGPKSEFVVSGSDCGHIFLWE 1718
+ + GH ++ V F+ P ++S S +++ E
Sbjct: 321 LYKLPGHA--GSINEVAFH-PDEPIILSASSDKRLYMGE 356
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 74,553,500
Number of extensions: 2089291
Number of successful extensions: 9145
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 9033
Number of HSP's successfully gapped: 11
Length of query: 755
Length of database: 15,617,559
Length adjustment: 109
Effective length of query: 646
Effective length of database: 12,343,635
Effective search space: 7973988210
Effective search space used: 7973988210
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007192
(2267 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003355147.1| PREDICTED: DDB1- and CUL4-associated factor ... 1056 0.0
Alignment gi|XP_001928921.1| PREDICTED: DDB1- and CUL4-associated factor ... 1056 0.0
Alignment gi|XP_001928902.1| PREDICTED: DDB1- and CUL4-associated factor ... 1056 0.0
Alignment gi|XP_001928897.1| PREDICTED: DDB1- and CUL4-associated factor ... 1056 0.0
Alignment gi|XP_003135039.1| PREDICTED: DDB1- and CUL4-associated factor ... 788 0.0
Alignment gi|NP_001129436.1| WD and tetratricopeptide repeats protein 1 [... 125 8e-29
Alignment gi|XP_003125692.2| PREDICTED: DDB1- and CUL4-associated factor ... 103 4e-22
Alignment gi|XP_003353752.1| PREDICTED: WD repeat-containing protein 5 [S... 70 6e-12
Alignment gi|XP_003358840.1| PREDICTED: WD repeat-containing protein 5B-l... 65 1e-10
Alignment gi|XP_003132297.1| PREDICTED: WD repeat-containing protein 82 [... 62 1e-09
>ref|XP_003355147.1| PREDICTED: DDB1- and CUL4-associated factor 8 [Sus scrofa].
Length = 596
Score = 1056 bits (2730), Expect = 0.0
Identities = 526/596 (88%), Positives = 526/596 (88%)
Frame = +3
Query: 333 MSSKGSSTDGKTDLANGSLSSSPEEMSGAEEGRETSSGIEVEASDLSLSLTGDDGGPNRT 512
MSSKGSSTDGKTDLANGSLSSSPEEMSGAEEGRETSSGIEVEASDLSLSLTGDDGGPNRT
Sbjct: 1 MSSKGSSTDGKTDLANGSLSSSPEEMSGAEEGRETSSGIEVEASDLSLSLTGDDGGPNRT 60
Query: 513 STESRGTDTESSGEDKDSDSMEDTGHYSINDENQVHDPSXXXXXXXXXXXXXXXXXXXXX 692
STESRGTDTESSGEDKDSDSMEDTGHYSINDENQVHDPS
Sbjct: 61 STESRGTDTESSGEDKDSDSMEDTGHYSINDENQVHDPSEEEEEEEEEEEEHPRRRVQRK 120
Query: 693 XANRDQDSSDDERALEDWVASETSALPRPRWQALPALRERELGSSARFVYEACGARVFVQ 872
ANRDQDSSDDERALEDWVASETSALPRPRWQALPALRERELGSSARFVYEACGARVFVQ
Sbjct: 121 RANRDQDSSDDERALEDWVASETSALPRPRWQALPALRERELGSSARFVYEACGARVFVQ 180
Query: 873 RFRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDLKVVVWDWVRRQPVLDFESGHKSNVFQ 1052
RFRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDLKVVVWDWVRRQPVLDFESGHKSNVFQ
Sbjct: 181 RFRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDLKVVVWDWVRRQPVLDFESGHKSNVFQ 240
Query: 1053 AKFLPNSGDSTLAMCARDGQVRVAELSATQCCKNTKRVAQHKGASHKLALEPDSPCTFLS 1232
AKFLPNSGDSTLAMCARDGQVRVAELSATQCCKNTKRVAQHKGASHKLALEPDSPCTFLS
Sbjct: 241 AKFLPNSGDSTLAMCARDGQVRVAELSATQCCKNTKRVAQHKGASHKLALEPDSPCTFLS 300
Query: 1233 AGEDAVVFTIDLRQDRPASXXXXXXXXXXXXGLYTIYVNPANTHQFAVGGRDQFVRIYDQ 1412
AGEDAVVFTIDLRQDRPAS GLYTIYVNPANTHQFAVGGRDQFVRIYDQ
Sbjct: 301 AGEDAVVFTIDLRQDRPASKLVVTKEKEKKVGLYTIYVNPANTHQFAVGGRDQFVRIYDQ 360
Query: 1413 RKIDENENNGVLKKFCPHHLVNSESKANITCLVYSHDGTELLASYNDEDIYLFNSSHSDG 1592
RKIDENENNGVLKKFCPHHLVNSESKANITCLVYSHDGTELLASYNDEDIYLFNSSHSDG
Sbjct: 361 RKIDENENNGVLKKFCPHHLVNSESKANITCLVYSHDGTELLASYNDEDIYLFNSSHSDG 420
Query: 1593 AQYIKRYKGHRNNATVKGVNFYGPKSEFVVSGSDCGHIFLWEKSSCQIIQFMEGDKGGVV 1772
AQYIKRYKGHRNNATVKGVNFYGPKSEFVVSGSDCGHIFLWEKSSCQIIQFMEGDKGGVV
Sbjct: 421 AQYIKRYKGHRNNATVKGVNFYGPKSEFVVSGSDCGHIFLWEKSSCQIIQFMEGDKGGVV 480
Query: 1773 NCLEPHPHLPVLATSGLDHDVKIWAPTAETSTELTGLKDVIKKNKRERDEDSLHHTDLFD 1952
NCLEPHPHLPVLATSGLDHDVKIWAPTAETSTELTGLKDVIKKNKRERDEDSLHHTDLFD
Sbjct: 481 NCLEPHPHLPVLATSGLDHDVKIWAPTAETSTELTGLKDVIKKNKRERDEDSLHHTDLFD 540
Query: 1953 SHMLWFLMXXXXXXXXXXXXXEPGVGXXXXXXXXXXXXXXXXXXXXXXXRVQCMPS 2120
SHMLWFLM EPGVG RVQCMPS
Sbjct: 541 SHMLWFLMHHLRQRRHHRRWREPGVGATDADSDESPSSSDTSDEEEGPDRVQCMPS 596
>ref|XP_001928921.1| PREDICTED: DDB1- and CUL4-associated factor 8 isoform 3 [Sus scrofa].
Length = 596
Score = 1056 bits (2730), Expect = 0.0
Identities = 526/596 (88%), Positives = 526/596 (88%)
Frame = +3
Query: 333 MSSKGSSTDGKTDLANGSLSSSPEEMSGAEEGRETSSGIEVEASDLSLSLTGDDGGPNRT 512
MSSKGSSTDGKTDLANGSLSSSPEEMSGAEEGRETSSGIEVEASDLSLSLTGDDGGPNRT
Sbjct: 1 MSSKGSSTDGKTDLANGSLSSSPEEMSGAEEGRETSSGIEVEASDLSLSLTGDDGGPNRT 60
Query: 513 STESRGTDTESSGEDKDSDSMEDTGHYSINDENQVHDPSXXXXXXXXXXXXXXXXXXXXX 692
STESRGTDTESSGEDKDSDSMEDTGHYSINDENQVHDPS
Sbjct: 61 STESRGTDTESSGEDKDSDSMEDTGHYSINDENQVHDPSEEEEEEEEEEEEHPRRRVQRK 120
Query: 693 XANRDQDSSDDERALEDWVASETSALPRPRWQALPALRERELGSSARFVYEACGARVFVQ 872
ANRDQDSSDDERALEDWVASETSALPRPRWQALPALRERELGSSARFVYEACGARVFVQ
Sbjct: 121 RANRDQDSSDDERALEDWVASETSALPRPRWQALPALRERELGSSARFVYEACGARVFVQ 180
Query: 873 RFRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDLKVVVWDWVRRQPVLDFESGHKSNVFQ 1052
RFRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDLKVVVWDWVRRQPVLDFESGHKSNVFQ
Sbjct: 181 RFRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDLKVVVWDWVRRQPVLDFESGHKSNVFQ 240
Query: 1053 AKFLPNSGDSTLAMCARDGQVRVAELSATQCCKNTKRVAQHKGASHKLALEPDSPCTFLS 1232
AKFLPNSGDSTLAMCARDGQVRVAELSATQCCKNTKRVAQHKGASHKLALEPDSPCTFLS
Sbjct: 241 AKFLPNSGDSTLAMCARDGQVRVAELSATQCCKNTKRVAQHKGASHKLALEPDSPCTFLS 300
Query: 1233 AGEDAVVFTIDLRQDRPASXXXXXXXXXXXXGLYTIYVNPANTHQFAVGGRDQFVRIYDQ 1412
AGEDAVVFTIDLRQDRPAS GLYTIYVNPANTHQFAVGGRDQFVRIYDQ
Sbjct: 301 AGEDAVVFTIDLRQDRPASKLVVTKEKEKKVGLYTIYVNPANTHQFAVGGRDQFVRIYDQ 360
Query: 1413 RKIDENENNGVLKKFCPHHLVNSESKANITCLVYSHDGTELLASYNDEDIYLFNSSHSDG 1592
RKIDENENNGVLKKFCPHHLVNSESKANITCLVYSHDGTELLASYNDEDIYLFNSSHSDG
Sbjct: 361 RKIDENENNGVLKKFCPHHLVNSESKANITCLVYSHDGTELLASYNDEDIYLFNSSHSDG 420
Query: 1593 AQYIKRYKGHRNNATVKGVNFYGPKSEFVVSGSDCGHIFLWEKSSCQIIQFMEGDKGGVV 1772
AQYIKRYKGHRNNATVKGVNFYGPKSEFVVSGSDCGHIFLWEKSSCQIIQFMEGDKGGVV
Sbjct: 421 AQYIKRYKGHRNNATVKGVNFYGPKSEFVVSGSDCGHIFLWEKSSCQIIQFMEGDKGGVV 480
Query: 1773 NCLEPHPHLPVLATSGLDHDVKIWAPTAETSTELTGLKDVIKKNKRERDEDSLHHTDLFD 1952
NCLEPHPHLPVLATSGLDHDVKIWAPTAETSTELTGLKDVIKKNKRERDEDSLHHTDLFD
Sbjct: 481 NCLEPHPHLPVLATSGLDHDVKIWAPTAETSTELTGLKDVIKKNKRERDEDSLHHTDLFD 540
Query: 1953 SHMLWFLMXXXXXXXXXXXXXEPGVGXXXXXXXXXXXXXXXXXXXXXXXRVQCMPS 2120
SHMLWFLM EPGVG RVQCMPS
Sbjct: 541 SHMLWFLMHHLRQRRHHRRWREPGVGATDADSDESPSSSDTSDEEEGPDRVQCMPS 596
>ref|XP_001928902.1| PREDICTED: DDB1- and CUL4-associated factor 8 isoform 2 [Sus scrofa].
Length = 596
Score = 1056 bits (2730), Expect = 0.0
Identities = 526/596 (88%), Positives = 526/596 (88%)
Frame = +3
Query: 333 MSSKGSSTDGKTDLANGSLSSSPEEMSGAEEGRETSSGIEVEASDLSLSLTGDDGGPNRT 512
MSSKGSSTDGKTDLANGSLSSSPEEMSGAEEGRETSSGIEVEASDLSLSLTGDDGGPNRT
Sbjct: 1 MSSKGSSTDGKTDLANGSLSSSPEEMSGAEEGRETSSGIEVEASDLSLSLTGDDGGPNRT 60
Query: 513 STESRGTDTESSGEDKDSDSMEDTGHYSINDENQVHDPSXXXXXXXXXXXXXXXXXXXXX 692
STESRGTDTESSGEDKDSDSMEDTGHYSINDENQVHDPS
Sbjct: 61 STESRGTDTESSGEDKDSDSMEDTGHYSINDENQVHDPSEEEEEEEEEEEEHPRRRVQRK 120
Query: 693 XANRDQDSSDDERALEDWVASETSALPRPRWQALPALRERELGSSARFVYEACGARVFVQ 872
ANRDQDSSDDERALEDWVASETSALPRPRWQALPALRERELGSSARFVYEACGARVFVQ
Sbjct: 121 RANRDQDSSDDERALEDWVASETSALPRPRWQALPALRERELGSSARFVYEACGARVFVQ 180
Query: 873 RFRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDLKVVVWDWVRRQPVLDFESGHKSNVFQ 1052
RFRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDLKVVVWDWVRRQPVLDFESGHKSNVFQ
Sbjct: 181 RFRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDLKVVVWDWVRRQPVLDFESGHKSNVFQ 240
Query: 1053 AKFLPNSGDSTLAMCARDGQVRVAELSATQCCKNTKRVAQHKGASHKLALEPDSPCTFLS 1232
AKFLPNSGDSTLAMCARDGQVRVAELSATQCCKNTKRVAQHKGASHKLALEPDSPCTFLS
Sbjct: 241 AKFLPNSGDSTLAMCARDGQVRVAELSATQCCKNTKRVAQHKGASHKLALEPDSPCTFLS 300
Query: 1233 AGEDAVVFTIDLRQDRPASXXXXXXXXXXXXGLYTIYVNPANTHQFAVGGRDQFVRIYDQ 1412
AGEDAVVFTIDLRQDRPAS GLYTIYVNPANTHQFAVGGRDQFVRIYDQ
Sbjct: 301 AGEDAVVFTIDLRQDRPASKLVVTKEKEKKVGLYTIYVNPANTHQFAVGGRDQFVRIYDQ 360
Query: 1413 RKIDENENNGVLKKFCPHHLVNSESKANITCLVYSHDGTELLASYNDEDIYLFNSSHSDG 1592
RKIDENENNGVLKKFCPHHLVNSESKANITCLVYSHDGTELLASYNDEDIYLFNSSHSDG
Sbjct: 361 RKIDENENNGVLKKFCPHHLVNSESKANITCLVYSHDGTELLASYNDEDIYLFNSSHSDG 420
Query: 1593 AQYIKRYKGHRNNATVKGVNFYGPKSEFVVSGSDCGHIFLWEKSSCQIIQFMEGDKGGVV 1772
AQYIKRYKGHRNNATVKGVNFYGPKSEFVVSGSDCGHIFLWEKSSCQIIQFMEGDKGGVV
Sbjct: 421 AQYIKRYKGHRNNATVKGVNFYGPKSEFVVSGSDCGHIFLWEKSSCQIIQFMEGDKGGVV 480
Query: 1773 NCLEPHPHLPVLATSGLDHDVKIWAPTAETSTELTGLKDVIKKNKRERDEDSLHHTDLFD 1952
NCLEPHPHLPVLATSGLDHDVKIWAPTAETSTELTGLKDVIKKNKRERDEDSLHHTDLFD
Sbjct: 481 NCLEPHPHLPVLATSGLDHDVKIWAPTAETSTELTGLKDVIKKNKRERDEDSLHHTDLFD 540
Query: 1953 SHMLWFLMXXXXXXXXXXXXXEPGVGXXXXXXXXXXXXXXXXXXXXXXXRVQCMPS 2120
SHMLWFLM EPGVG RVQCMPS
Sbjct: 541 SHMLWFLMHHLRQRRHHRRWREPGVGATDADSDESPSSSDTSDEEEGPDRVQCMPS 596
>ref|XP_001928897.1| PREDICTED: DDB1- and CUL4-associated factor 8 isoform 1 [Sus scrofa].
Length = 596
Score = 1056 bits (2730), Expect = 0.0
Identities = 526/596 (88%), Positives = 526/596 (88%)
Frame = +3
Query: 333 MSSKGSSTDGKTDLANGSLSSSPEEMSGAEEGRETSSGIEVEASDLSLSLTGDDGGPNRT 512
MSSKGSSTDGKTDLANGSLSSSPEEMSGAEEGRETSSGIEVEASDLSLSLTGDDGGPNRT
Sbjct: 1 MSSKGSSTDGKTDLANGSLSSSPEEMSGAEEGRETSSGIEVEASDLSLSLTGDDGGPNRT 60
Query: 513 STESRGTDTESSGEDKDSDSMEDTGHYSINDENQVHDPSXXXXXXXXXXXXXXXXXXXXX 692
STESRGTDTESSGEDKDSDSMEDTGHYSINDENQVHDPS
Sbjct: 61 STESRGTDTESSGEDKDSDSMEDTGHYSINDENQVHDPSEEEEEEEEEEEEHPRRRVQRK 120
Query: 693 XANRDQDSSDDERALEDWVASETSALPRPRWQALPALRERELGSSARFVYEACGARVFVQ 872
ANRDQDSSDDERALEDWVASETSALPRPRWQALPALRERELGSSARFVYEACGARVFVQ
Sbjct: 121 RANRDQDSSDDERALEDWVASETSALPRPRWQALPALRERELGSSARFVYEACGARVFVQ 180
Query: 873 RFRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDLKVVVWDWVRRQPVLDFESGHKSNVFQ 1052
RFRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDLKVVVWDWVRRQPVLDFESGHKSNVFQ
Sbjct: 181 RFRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDLKVVVWDWVRRQPVLDFESGHKSNVFQ 240
Query: 1053 AKFLPNSGDSTLAMCARDGQVRVAELSATQCCKNTKRVAQHKGASHKLALEPDSPCTFLS 1232
AKFLPNSGDSTLAMCARDGQVRVAELSATQCCKNTKRVAQHKGASHKLALEPDSPCTFLS
Sbjct: 241 AKFLPNSGDSTLAMCARDGQVRVAELSATQCCKNTKRVAQHKGASHKLALEPDSPCTFLS 300
Query: 1233 AGEDAVVFTIDLRQDRPASXXXXXXXXXXXXGLYTIYVNPANTHQFAVGGRDQFVRIYDQ 1412
AGEDAVVFTIDLRQDRPAS GLYTIYVNPANTHQFAVGGRDQFVRIYDQ
Sbjct: 301 AGEDAVVFTIDLRQDRPASKLVVTKEKEKKVGLYTIYVNPANTHQFAVGGRDQFVRIYDQ 360
Query: 1413 RKIDENENNGVLKKFCPHHLVNSESKANITCLVYSHDGTELLASYNDEDIYLFNSSHSDG 1592
RKIDENENNGVLKKFCPHHLVNSESKANITCLVYSHDGTELLASYNDEDIYLFNSSHSDG
Sbjct: 361 RKIDENENNGVLKKFCPHHLVNSESKANITCLVYSHDGTELLASYNDEDIYLFNSSHSDG 420
Query: 1593 AQYIKRYKGHRNNATVKGVNFYGPKSEFVVSGSDCGHIFLWEKSSCQIIQFMEGDKGGVV 1772
AQYIKRYKGHRNNATVKGVNFYGPKSEFVVSGSDCGHIFLWEKSSCQIIQFMEGDKGGVV
Sbjct: 421 AQYIKRYKGHRNNATVKGVNFYGPKSEFVVSGSDCGHIFLWEKSSCQIIQFMEGDKGGVV 480
Query: 1773 NCLEPHPHLPVLATSGLDHDVKIWAPTAETSTELTGLKDVIKKNKRERDEDSLHHTDLFD 1952
NCLEPHPHLPVLATSGLDHDVKIWAPTAETSTELTGLKDVIKKNKRERDEDSLHHTDLFD
Sbjct: 481 NCLEPHPHLPVLATSGLDHDVKIWAPTAETSTELTGLKDVIKKNKRERDEDSLHHTDLFD 540
Query: 1953 SHMLWFLMXXXXXXXXXXXXXEPGVGXXXXXXXXXXXXXXXXXXXXXXXRVQCMPS 2120
SHMLWFLM EPGVG RVQCMPS
Sbjct: 541 SHMLWFLMHHLRQRRHHRRWREPGVGATDADSDESPSSSDTSDEEEGPDRVQCMPS 596
>ref|XP_003135039.1| PREDICTED: DDB1- and CUL4-associated factor 8-like [Sus scrofa].
Length = 604
Score = 788 bits (2035), Expect = 0.0
Identities = 401/607 (66%), Positives = 449/607 (73%), Gaps = 11/607 (1%)
Frame = +3
Query: 333 MSSKGSSTDGKTDLANGSLSSSPEEMSGAEEGRETSSGIEVEASDLSLSLTGDDGG---- 500
M+ SSTDG DL N LS PEE SG E GRE E+ LS++ G D G
Sbjct: 1 MADDESSTDGPPDLENRGLSDHPEESSGVEAGREACPDTEII---LSVTRGGGDFGSGGI 57
Query: 501 PNRTSTESRGTDTESSGEDKDSDSMEDTGHYSINDENQVH-------DPSXXXXXXXXXX 659
P STE++GT +E S ED D + +ED ++ INDENQ H
Sbjct: 58 PEHASTENQGTSSERSSEDIDIECVEDADNFFINDENQFHYREEEELREEEEFGEEEQEE 117
Query: 660 XXXXXXXXXXXXANRDQDSSDDERALEDWVASETSALPRPRWQALPALRERELGSSARFV 839
AN + S +++ALE+WV+SETSALP PRW+ L ALRER+LGSSARFV
Sbjct: 118 LAEEQPQVQCGEANHGECLSAEDQALEEWVSSETSALPLPRWRVLNALRERQLGSSARFV 177
Query: 840 YEACGARVFVQRFRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDLKVVVWDWVRRQPVLD 1019
YEACGARVFVQ F+LQ+GLEGH GCVNTLHFNQRGTWLA+ SDDLKV++WDWVR+QPVL
Sbjct: 178 YEACGARVFVQHFQLQYGLEGHNGCVNTLHFNQRGTWLATSSDDLKVILWDWVRQQPVLV 237
Query: 1020 FESGHKSNVFQAKFLPNSGDSTLAMCARDGQVRVAELSATQCCKNTKRVAQHKGASHKLA 1199
FESGH++NVFQAKFLPN GD T+AMCARDGQVRVAELSA CKNTKRVAQH+GA+HKLA
Sbjct: 238 FESGHRNNVFQAKFLPNCGDPTMAMCARDGQVRVAELSAIPHCKNTKRVAQHRGAAHKLA 297
Query: 1200 LEPDSPCTFLSAGEDAVVFTIDLRQDRPASXXXXXXXXXXXXGLYTIYVNPANTHQFAVG 1379
LEPDSP FL++GEDAVVF IDLRQ RPAS GLYT+ VNPA+T+QFAVG
Sbjct: 298 LEPDSPFKFLTSGEDAVVFAIDLRQGRPASRVVVTKDKEKKVGLYTVCVNPADTYQFAVG 357
Query: 1380 GRDQFVRIYDQRKIDENENNGVLKKFCPHHLVNSESKANITCLVYSHDGTELLASYNDED 1559
GRDQFVRIYDQRKIDENENNGVLKKFCPHHLV+ +S ANIT LVYSHDGTELLASYNDED
Sbjct: 358 GRDQFVRIYDQRKIDENENNGVLKKFCPHHLVSCDSTANITGLVYSHDGTELLASYNDED 417
Query: 1560 IYLFNSSHSDGAQYIKRYKGHRNNATVKGVNFYGPKSEFVVSGSDCGHIFLWEKSSCQII 1739
IYLFNSSH DGAQY+KRYKGHRNNATVKGVNFYGP+SEFVVSGSDCGHIFLWEKSSCQI+
Sbjct: 418 IYLFNSSHCDGAQYVKRYKGHRNNATVKGVNFYGPRSEFVVSGSDCGHIFLWEKSSCQIV 477
Query: 1740 QFMEGDKGGVVNCLEPHPHLPVLATSGLDHDVKIWAPTAETSTELTGLKDVIKKNKRERD 1919
QFMEGDKGG VNCLEPHP+LPV+ATSGLDHD KIWAPTA+T+T L GLK+VIKKNK+ERD
Sbjct: 478 QFMEGDKGGTVNCLEPHPYLPVMATSGLDHDAKIWAPTAKTTTGLIGLKNVIKKNKQERD 537
Query: 1920 EDSLHHTDLFDSHMLWFLMXXXXXXXXXXXXXEPGVGXXXXXXXXXXXXXXXXXXXXXXX 2099
EDSLHH DLFDSHML FLM P VG
Sbjct: 538 EDSLHHIDLFDSHMLRFLMHHLTQRGHHQHWRSPEVGVMDADLDESSSTSDTSEEEDNQD 597
Query: 2100 RVQCMPS 2120
+QC+PS
Sbjct: 598 EMQCLPS 604
>ref|NP_001129436.1| WD and tetratricopeptide repeats protein 1 [Sus scrofa].
Length = 678
Score = 125 bits (315), Expect = 8e-29
Identities = 82/270 (30%), Positives = 129/270 (47%), Gaps = 30/270 (11%)
Frame = +3
Query: 864 FVQRFRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDLKVVVWDWVRRQPVLDFESGHKSN 1043
F++R L+ L+GH+GCVN L +N++G LASGSDD +VWD + + +L +GH +N
Sbjct: 33 FIRRLGLEAELQGHSGCVNCLEWNEKGDLLASGSDDQHTIVWDPLHHKKLLSMHTGHTAN 92
Query: 1044 VFQAKFLPNSGDSTLAMCARDGQVRVAELSATQCCKNTKRVAQHKGASHKLALEPDSPCT 1223
+F KFLP++GD L A D +V V +L+ + H ++A P P T
Sbjct: 93 IFSVKFLPHAGDRILITGAADSKVHVHDLTVKE---TIHMFGDHTNRVKRIATAPMWPNT 149
Query: 1224 FLSAGEDAVVFTIDLRQDRPASXXXXXXXXXXXXGLYT--IYVNPANTHQFAVGGRDQFV 1397
F SA ED ++ DLR++ S + + VNP + + AVG FV
Sbjct: 150 FWSAAEDGLIRQYDLRENSKHSEVLIDLTEYCGQLVEAKCLTVNPQDNNCLAVGASGPFV 209
Query: 1398 RIYDQRKIDENEN---------------------NGVLKKFCPHHL------VNSESKAN 1496
R+YD R I + +G + + HL N+ +
Sbjct: 210 RLYDIRMIHNHRKSMKQSPSAGVHTFCDRQKPLPDGAAQYYVAGHLPVKLPDYNNRLRVL 269
Query: 1497 I-TCLVYSHDGTELLASYNDEDIYLFNSSH 1583
+ T + +S +GTELL + E +YLF+ ++
Sbjct: 270 VATYVTFSPNGTELLVNMGGEQVYLFDLTY 299
Score = 93.2 bits (230), Expect = 5e-19
Identities = 51/136 (37%), Positives = 82/136 (60%), Gaps = 6/136 (4%)
Frame = +3
Query: 1542 SYNDEDIYLFNSSHSDGAQYIKRYKGHRNNAT-VKGVNFYGPKSEFVVSGSDCGHIFLWE 1718
S +++++ L S+ Y RY GH N T +K NF+G ++++VSGSD G F+WE
Sbjct: 512 SISEDEMVLRERSYD----YQFRYCGHCNTTTDIKEANFFGSNAQYIVSGSDDGSFFIWE 567
Query: 1719 KSSCQIIQFMEGDKGGVVNCLEPHPHLPVLATSGLDHDVKIWAPTAETSTELTG-----L 1883
K + +++ ++GD+ +VNCL+PHP LATSG+D V++W P E S +LTG +
Sbjct: 568 KETTNLVRVLQGDE-SIVNCLQPHPSYCFLATSGIDPVVRLWNPRPE-SEDLTGRVVEDM 625
Query: 1884 KDVIKKNKRERDEDSL 1931
+ + N+R + D L
Sbjct: 626 EGASQANQRRMNADPL 641
>ref|XP_003125692.2| PREDICTED: DDB1- and CUL4-associated factor 6-like [Sus scrofa].
Length = 1234
Score = 103 bits (257), Expect = 4e-22
Identities = 49/100 (49%), Positives = 70/100 (70%), Gaps = 1/100 (1%)
Frame = +3
Query: 1611 YKGHRNNAT-VKGVNFYGPKSEFVVSGSDCGHIFLWEKSSCQIIQFMEGDKGGVVNCLEP 1787
YKGHRN+ T +K NF+G + FV+SGSDCGHIF+W++ + + + +E D VVNCL+P
Sbjct: 1095 YKGHRNSRTMIKEANFWG--ANFVMSGSDCGHIFIWDRHTAEHLMLLEADNH-VVNCLQP 1151
Query: 1788 HPHLPVLATSGLDHDVKIWAPTAETSTELTGLKDVIKKNK 1907
HP P+LA+SG+D+D+KIW+P E+ L D +K K
Sbjct: 1152 HPFDPILASSGIDYDIKIWSPLEESRIFNRKLADEVKNLK 1191
Score = 93.2 bits (230), Expect = 5e-19
Identities = 49/106 (46%), Positives = 71/106 (66%), Gaps = 2/106 (1%)
Frame = +3
Query: 1611 YKGHRNNAT-VKGVNFYGPKSEFVVSGSDCGHIFLWEKSSCQIIQFMEGDKGGVVNCLEP 1787
YKGHRN+ T +K NF+G + FV+SGSDCGHIF+W++ + + + +E D VVNCL+P
Sbjct: 339 YKGHRNSRTMIKEANFWG--ANFVMSGSDCGHIFIWDRHTAEHLMLLEAD-NHVVNCLQP 395
Query: 1788 HPHLPVLATSGLDHDVKIWAPTAETSTELTGLKD-VIKKNKRERDE 1922
HP P +SG+D+D+KIW+P E+ L D VI +N+ +E
Sbjct: 396 HPFDP--TSSGIDYDIKIWSPLEESRIFNRKLADEVITRNELMLEE 439
Score = 65.9 bits (159), Expect = 9e-11
Identities = 48/158 (30%), Positives = 68/158 (43%), Gaps = 10/158 (6%)
Frame = +3
Query: 1206 PDSPCTFLSAGEDAVVFTIDLRQDRPASXXXXXXXXXXXX--GLYTIYVNPANTHQFAVG 1379
P+ P TFLS GED V D R + ++ + P + AVG
Sbjct: 17 PNDPYTFLSCGEDGTVRWFDTRIKTSCTKEDCKDDILINCRRAATSVAICPPIPYYLAVG 76
Query: 1380 GRDQFVRIYDQRKIDENENN--------GVLKKFCPHHLVNSESKANITCLVYSHDGTEL 1535
D VRIYD+R + G++ +F P HL N + +T L YS DG E+
Sbjct: 77 CSDSSVRIYDRRMLGTRATGNYAGRGTTGMVARFIPSHLNNKSCR--VTSLCYSEDGQEI 134
Query: 1536 LASYNDEDIYLFNSSHSDGAQYIKRYKGHRNNATVKGV 1649
L SY+ + IYLF+ D A+ +K VK +
Sbjct: 135 LVSYSSDYIYLFDPK-DDTARELKTPSAEERREEVKSL 171
>ref|XP_003353752.1| PREDICTED: WD repeat-containing protein 5 [Sus scrofa].
Length = 334
Score = 69.7 bits (169), Expect = 6e-12
Identities = 76/333 (22%), Positives = 142/333 (42%), Gaps = 10/333 (3%)
Frame = +3
Query: 876 FRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDLKVVVWDWVRRQPVLDFE---SGHKSNV 1046
+ L+ L GHT V+++ F+ G WLAS S D + +W + FE SGHK +
Sbjct: 35 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK----FEKTISGHKLGI 90
Query: 1047 FQAKFLPNSGDSTLAMCARDGQ-VRVAELSATQCCKNTKRVAQHKGASHKLALEPDSPCT 1223
+ S DS L + A D + +++ ++S+ +C K K H P S
Sbjct: 91 SDVAW---SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKG---HSNYVFCCNFNPQSNLI 144
Query: 1224 FLSAGEDAV----VFTIDLRQDRPASXXXXXXXXXXXXGLYTIYVNPANTHQFAVGGRDQ 1391
+ +++V V T + PA G + D
Sbjct: 145 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS-----------SSYDG 193
Query: 1392 FVRIYDQRKIDENENNGVLKKFCPHHLVNSESKANITCLVYSHDGTELLASYNDEDIYLF 1571
RI+D C L++ ++ ++ + +S +G +LA+ D + L+
Sbjct: 194 LCRIWDTASGQ-----------CLKTLIDDDNPP-VSFVKFSPNGKYILAATLDNTLKLW 241
Query: 1572 NSSHSDGAQYIKRYKGHRNNATVKGVNFYGPKSEFVVSGSDCGHIFLWEKSSCQIIQFME 1751
+ S + +K Y GH+N NF +++VSGS+ +++W + +I+Q ++
Sbjct: 242 DYSKG---KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 298
Query: 1752 GDKGGVVNCLEPHPHLPVLATSGLDHD--VKIW 1844
G V++ HP ++A++ L++D +K+W
Sbjct: 299 GHTDVVIS-TACHPTENIIASAALENDKTIKLW 330
>ref|XP_003358840.1| PREDICTED: WD repeat-containing protein 5B-like [Sus scrofa].
Length = 330
Score = 65.5 bits (158), Expect = 1e-10
Identities = 72/326 (22%), Positives = 138/326 (42%), Gaps = 3/326 (0%)
Frame = +3
Query: 876 FRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDLKVVVWDWVRRQPVLDFESGHKSNVFQA 1055
+ L+ L GHT V+++ F+ G WLAS S D +++W + +E K + +
Sbjct: 31 YTLKFTLVGHTEAVSSVKFSPNGEWLASSSADKVIIIWGAYDGK----YEKALKGHSLEI 86
Query: 1056 KFLPNSGDSTLAMCARDGQ-VRVAELSATQCCKNTKRVAQHKGASHKLALEPDSPCTFLS 1232
+ S DS + A D + +++ ++ +C K K H P S +S
Sbjct: 87 SDVAWSSDSGRLVSASDDKTLKIWDVRVGKCLKTLKG---HSNYVFCCNFNPPSNL-IIS 142
Query: 1233 AGEDAVVFTIDLRQDRPASXXXXXXXXXXXXGLYTIYVNPANTHQFAVGGRDQFVRIYDQ 1412
D V +++ R + ++ N + G D RI+D
Sbjct: 143 GSFDESVKIWEVKTGRCLKTLSAHSDP-----VSAVHFNCKGS-LIVSGSYDGVCRIWDA 196
Query: 1413 RKIDENENNGVLKKFCPHHLVNSESKANITCLVYSHDGTELLASYNDEDIYLFNSSHSDG 1592
C LV+ ++ I+ + +S +G +L + D + L++ S
Sbjct: 197 ASGQ-----------CLKTLVDDDNPP-ISFVKFSPNGKYILIATLDNTLKLWDYSRG-- 242
Query: 1593 AQYIKRYKGHRNNATVKGVNFYGPKSEFVVSGSDCGHIFLWEKSSCQIIQFMEGDKGGVV 1772
+ +K Y GH+N NF +++VSGS+ +++W + +I+Q ++G V+
Sbjct: 243 -RCLKTYTGHKNEKYCIFANFSVTSGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVI 301
Query: 1773 NCLEPHPHLPVLATSGLDHD--VKIW 1844
+ HP ++A++ L +D VK+W
Sbjct: 302 SA-ACHPTENIIASAALGNDKTVKLW 326
>ref|XP_003132297.1| PREDICTED: WD repeat-containing protein 82 [Sus scrofa].
Length = 313
Score = 62.4 bits (150), Expect = 1e-09
Identities = 74/338 (21%), Positives = 131/338 (38%), Gaps = 7/338 (2%)
Frame = +3
Query: 867 VQRFRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDLKVVVWDWVRRQPVLDFESGHKSNV 1046
++ FR+ ++ +N F+ G + S SDD +V++D +P S K V
Sbjct: 8 LRSFRVAKVFRENSDKINCFDFSPNGETVISSSDDDSIVLYDCQEGKPKRTLYS-KKYGV 66
Query: 1047 FQAKFLPNSGDSTLAMCARDGQVRVAELSATQCCKNTKRVAQHKGASHKLALEPDSPC-- 1220
++ + + D +R L + K + G S ++ SP
Sbjct: 67 DLIRYTHAANTVVYSSNKIDDTIRYLSLH------DNKYIRYFPGHSKRVVALSMSPVDD 120
Query: 1221 TFLSAGEDAVVFTIDLRQDRPASXXXXXXXXXXXXGLYTIYVNPANTHQ-----FAVGGR 1385
TF+S D + DLR GL + P + FA G
Sbjct: 121 TFISGSLDKTIRLWDLRSPN-------------CQGLMHLQGKPVCSFDPEGLIFAAGVN 167
Query: 1386 DQFVRIYDQRKIDENENNGVLKKFCPHHLVNSESKANITCLVYSHDGTELLASYNDEDIY 1565
+ V++YD R D+ G F + + T L +S+DG +L S N I
Sbjct: 168 SEMVKLYDLRSFDK----GPFATFKMQY----DRTCEWTGLKFSNDGKLILISTNGSFIR 219
Query: 1566 LFNSSHSDGAQYIKRYKGHRNNATVKGVNFYGPKSEFVVSGSDCGHIFLWEKSSCQIIQF 1745
L ++ + + G+ N+ V + P S+F++ GS+ G I +W S +
Sbjct: 220 LIDAFKG---VVMHTFGGYANSKAVTLEASFTPDSQFIMIGSEDGKIHVWNGESGIKVAV 276
Query: 1746 MEGDKGGVVNCLEPHPHLPVLATSGLDHDVKIWAPTAE 1859
++G G + CL+ +P A++ ++ W PT +
Sbjct: 277 LDGKHTGPITCLQFNPKFMTFASA--CSNMAFWLPTID 312
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 55,995,402
Number of extensions: 1682159
Number of successful extensions: 7000
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 6902
Number of HSP's successfully gapped: 15
Length of query: 755
Length of database: 11,343,932
Length adjustment: 107
Effective length of query: 648
Effective length of database: 8,679,953
Effective search space: 5624609544
Effective search space used: 5624609544
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007192
(2267 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_ChrX 1126 0.0
Sscrofa_Chr04 769 0.0
>Sscrofa_ChrX
|| Length = 144288218
Score = 1126 bits (568), Expect = 0.0
Identities = 1105/1284 (86%)
Strand = Plus / Plus
Query: 732 gccctggaggactgggtagcctcagagacatcagccctgccccgacctcgctggcaagcc 791
||||||||||| ||||| | ||||||||||| ||||| |||| |||||||||| | |
Sbjct: 25346105 gccctggaggaatgggtgtcttcagagacatctgccctaccccttcctcgctggcgggtc 25346164
Query: 792 cttcctgctcttcgggagcgggagctgggttcaagtgcccgttttgtgtatgaggcttgt 851
||| |||||| || || ||| ||||||||||||||||||| |||||||||||||| ||
Sbjct: 25346165 cttaatgctctgcgagaacggcagctgggttcaagtgcccgctttgtgtatgaggcctgc 25346224
Query: 852 ggggcaagagtctttgtgcagcgtttccgtctgcagcatgggcttgagggccatactggt 911
|||||||||||||||||||||| ||||| ||||| |||||||||||||||| | ||||
Sbjct: 25346225 ggggcaagagtctttgtgcagcatttccagttgcagtatgggcttgagggccacaatggt 25346284
Query: 912 tgtgttaataccctgcactttaaccagcgcggcacctggctggccagtggcagcgatgac 971
||||| ||||| ||||||||||||||||| |||||||||||||||| |||| |||||
Sbjct: 25346285 tgtgtcaatactctgcactttaaccagcgtggcacctggctggccacaagcagtgatgat 25346344
Query: 972 ctgaaagtggtggtttgggactgggtgcggcgacagccagtattggactttgagagtggc 1031
|| ||||| | | |||||||||||||| | ||||||||| ||| |||||||||||||
Sbjct: 25346345 cttaaagtaatattgtgggactgggtgcgtcagcagccagtactggtctttgagagtggc 25346404
Query: 1032 cacaaaagcaatgtcttccaggccaagttccttcctaacagtggtgattctaccctggcc 1091
|||| || ||||| || ||||||||||||||||| ||| |||||||| | ||| |||||
Sbjct: 25346405 cacagaaataatgtttttcaggccaagttccttcccaactgtggtgatcccaccatggcc 25346464
Query: 1092 atgtgtgcccgtgatgggcaggttcgggtagcagagttgtctgctacacagtgctgcaag 1151
||||||||||||||||||||||| || ||||||||||||||||||| || |||||||
Sbjct: 25346465 atgtgtgcccgtgatgggcaggtacgcgtagcagagttgtctgctataccacactgcaag 25346524
Query: 1152 aatacgaagcgtgtggcacagcacaagggagcatcccacaaattggccctggaaccagac 1211
|| || ||||| ||||| ||||||| |||||| ||||||| || || ||||| || |||
Sbjct: 25346525 aacaccaagcgggtggcccagcacaggggagccgcccacaagttagctctggagcctgac 25346584
Query: 1212 tctccctgtacgttcctgtctgcaggtgaagatgcagttgtctttaccattgaccttaga 1271
|| || | || |||||| || |||| |||||||||||||||||| ||||||||||||||
Sbjct: 25346585 tccccttttaagttcctaacttcaggggaagatgcagttgtctttgccattgaccttaga 25346644
Query: 1272 caagaccggccagcttcgaaattggtggtgacaaaagaaaaggagaagaaagtggggctg 1331
|||| |||||| ||||| | | ||||||| |||||||| ||||||||||||||||| |||
Sbjct: 25346645 caaggccggccggcttcaagagtggtggtaacaaaagataaggagaagaaagtgggactg 25346704
Query: 1332 tatacaatctatgtgaatcccgccaatacacatcagtttgcagtgggtggacgagatcag 1391
|||||| ||| ||||||||| ||| |||| | || ||||||||||||||||||||||||
Sbjct: 25346705 tatacagtctgtgtgaatcctgccgatacttaccaatttgcagtgggtggacgagatcag 25346764
Query: 1392 tttgtaaggatttatgaccagaggaaaattgatgagaatgaaaacaatggagtactcaag 1451
||||| || |||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct: 25346765 tttgtcagaatttatgaccagaggaaaattgatgagaatgagaataatggagtactcaag 25346824
Query: 1452 aaattctgtcctcatcacctggtgaacagtgagtccaaagcaaacatcacctgtcttgtg 1511
||||| ||||||||||||||||| | | |||| || | ||| |||||||| | ||||||
Sbjct: 25346825 aaattttgtcctcatcacctggtcagctgtgattctacagctaacatcactggccttgtg 25346884
Query: 1512 tacagccacgacggcacagagctcctggccagttacaacgatgaagacatttacctcttc 1571
||||| ||||| ||||||||||||||||| |||||||| |||||||| ||||||||||||
Sbjct: 25346885 tacagtcacgatggcacagagctcctggctagttacaatgatgaagatatttacctcttc 25346944
Query: 1572 aactcctctcacagtgatggggcccagtatattaaaagatacaagggccacagaaataac 1631
||||| |||||| ||||||| ||||||||| |||||||||||||||| ||||| |||||
Sbjct: 25346945 aactcttctcactgtgatggtgcccagtatgttaaaagatacaagggacacaggaataat 25347004
Query: 1632 gccacagtaaaaggcgtcaatttctatggccccaagagtgagtttgtggtgagcggtagt 1691
|||||||| ||||| ||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 25347005 gccacagtcaaaggtgtcaatttctatggccccagaagtgagtttgtcgtgagcggtagt 25347064
Query: 1692 gactgcgggcacatcttcctctgggagaaatcatcctgccagatcattcagttcatggag 1751
|| || ||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct: 25347065 gattgtgggcacatctttctctgggagaaatcatcctgccagattgttcagttcatggag 25347124
Query: 1752 ggggacaagggaggcgtggtaaattgtcttgagccccatcctcacctgcctgtgctggca 1811
|| || || ||||| ||||| |||||||||||||||||| |||| |||||| ||||
Sbjct: 25347125 ggagataaaggagggactgtaaactgtcttgagccccatccttacctacctgtgatggcg 25347184
Query: 1812 accagtggcctagaccatgatgtcaagatctgggcacccacagccgaaacttccactgag 1871
|||||||| ||||||||||||| |||||||||||||||||||| |||| ||||||
Sbjct: 25347185 accagtggtctagaccatgatgctaagatctgggcacccacagctaaaacgaccactggc 25347244
Query: 1872 cttacagggttaaaggatgtgattaagaagaacaagcgggaacgggatgaagatagctta 1931
|||| || |||||| ||||||||||||||||||||| |||||| |||||||||||| |
Sbjct: 25347245 cttattggcttaaagaatgtgattaagaagaacaagcaggaacgagatgaagatagcctg 25347304
Query: 1932 caccacactgacttatttgatagccacatgctctggttcctcatgcatcacctgagacag 1991
||||||| |||| | || || || |||||||| |||||||||||||||| |||| ||||
Sbjct: 25347305 caccacattgacctgttcgacagtcacatgcttaggttcctcatgcatcatctgacacag 25347364
Query: 1992 agacgccatcaccggcgctggcga 2015
||| ||||||||| || |||||||
Sbjct: 25347365 agaggccatcaccagcactggcga 25347388
>Sscrofa_Chr04
|| Length = 143465943
Score = 769 bits (388), Expect = 0.0
Identities = 388/388 (100%)
Strand = Plus / Plus
Query: 666 catcctcgtcgccgtgtacagcgcaagcgggccaatcgtgatcaggactcatccgacgat 725
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98125404 catcctcgtcgccgtgtacagcgcaagcgggccaatcgtgatcaggactcatccgacgat 98125463
Query: 726 gagcgagccctggaggactgggtagcctcagagacatcagccctgccccgacctcgctgg 785
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98125464 gagcgagccctggaggactgggtagcctcagagacatcagccctgccccgacctcgctgg 98125523
Query: 786 caagcccttcctgctcttcgggagcgggagctgggttcaagtgcccgttttgtgtatgag 845
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98125524 caagcccttcctgctcttcgggagcgggagctgggttcaagtgcccgttttgtgtatgag 98125583
Query: 846 gcttgtggggcaagagtctttgtgcagcgtttccgtctgcagcatgggcttgagggccat 905
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98125584 gcttgtggggcaagagtctttgtgcagcgtttccgtctgcagcatgggcttgagggccat 98125643
Query: 906 actggttgtgttaataccctgcactttaaccagcgcggcacctggctggccagtggcagc 965
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98125644 actggttgtgttaataccctgcactttaaccagcgcggcacctggctggccagtggcagc 98125703
Query: 966 gatgacctgaaagtggtggtttgggactgggtgcggcgacagccagtattggactttgag 1025
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98125704 gatgacctgaaagtggtggtttgggactgggtgcggcgacagccagtattggactttgag 98125763
Query: 1026 agtggccacaaaagcaatgtcttccagg 1053
||||||||||||||||||||||||||||
Sbjct: 98125764 agtggccacaaaagcaatgtcttccagg 98125791
Score = 494 bits (249), Expect = e-136
Identities = 249/249 (100%)
Strand = Plus / Plus
Query: 381 ggaagcctgtctagcagtccagaggagatgtctggtgctgaggaagggagagagacatcc 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98125119 ggaagcctgtctagcagtccagaggagatgtctggtgctgaggaagggagagagacatcc 98125178
Query: 441 tcaggcattgaagtggaggcctcagacctgagcttgagcttgactggggatgatggtggc 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98125179 tcaggcattgaagtggaggcctcagacctgagcttgagcttgactggggatgatggtggc 98125238
Query: 501 cccaatcgcaccagcacagaaagtcgaggcacggatacagagagctcaggtgaagacaag 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98125239 cccaatcgcaccagcacagaaagtcgaggcacggatacagagagctcaggtgaagacaag 98125298
Query: 561 gactctgacagcatggaggacactggccattactccatcaatgatgaaaaccaagtccat 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98125299 gactctgacagcatggaggacactggccattactccatcaatgatgaaaaccaagtccat 98125358
Query: 621 gacccctca 629
|||||||||
Sbjct: 98125359 gacccctca 98125367
Score = 474 bits (239), Expect = e-130
Identities = 239/239 (100%)
Strand = Plus / Plus
Query: 2006 gcgctggcgagaacctggggttggggccacagacgcagattcggatgagtctcccagctc 2065
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98150688 gcgctggcgagaacctggggttggggccacagacgcagattcggatgagtctcccagctc 98150747
Query: 2066 ctcagacacatcggacgaggaggagggccccgaccgggtgcagtgtatgccatcctgagg 2125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98150748 ctcagacacatcggacgaggaggagggccccgaccgggtgcagtgtatgccatcctgagg 98150807
Query: 2126 cctcgtacccaggaggggcaggccagggctgccaacctgatcctgcctgggcagcccttt 2185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98150808 cctcgtacccaggaggggcaggccagggctgccaacctgatcctgcctgggcagcccttt 98150867
Query: 2186 cctgtcccaggcccttacattcagcagaaacgcactttggacatttttgctttagattt 2244
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98150868 cctgtcccaggcccttacattcagcagaaacgcactttggacatttttgctttagattt 98150926
Score = 474 bits (239), Expect = e-130
Identities = 239/239 (100%)
Strand = Plus / Plus
Query: 2006 gcgctggcgagaacctggggttggggccacagacgcagattcggatgagtctcccagctc 2065
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98202688 gcgctggcgagaacctggggttggggccacagacgcagattcggatgagtctcccagctc 98202747
Query: 2066 ctcagacacatcggacgaggaggagggccccgaccgggtgcagtgtatgccatcctgagg 2125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98202748 ctcagacacatcggacgaggaggagggccccgaccgggtgcagtgtatgccatcctgagg 98202807
Query: 2126 cctcgtacccaggaggggcaggccagggctgccaacctgatcctgcctgggcagcccttt 2185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98202808 cctcgtacccaggaggggcaggccagggctgccaacctgatcctgcctgggcagcccttt 98202867
Query: 2186 cctgtcccaggcccttacattcagcagaaacgcactttggacatttttgctttagattt 2244
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98202868 cctgtcccaggcccttacattcagcagaaacgcactttggacatttttgctttagattt 98202926
Score = 331 bits (167), Expect = 1e-87
Identities = 167/167 (100%)
Strand = Plus / Plus
Query: 1 ggcggccgctggccagtgtaagatggcggcggcgttggtggcggcagtggacggggcggc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98104451 ggcggccgctggccagtgtaagatggcggcggcgttggtggcggcagtggacggggcggc 98104510
Query: 61 tgggcctggaacagtcggagcagccgctggcagaaggatgacccaagacgggaagcgggc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98104511 tgggcctggaacagtcggagcagccgctggcagaaggatgacccaagacgggaagcgggc 98104570
Query: 121 tgcagagtctcgccggctcccgtgcttgtaactgccccagccggaca 167
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98104571 tgcagagtctcgccggctcccgtgcttgtaactgccccagccggaca 98104617
Score = 287 bits (145), Expect = 1e-74
Identities = 145/145 (100%)
Strand = Plus / Plus
Query: 1049 ccaggccaagttccttcctaacagtggtgattctaccctggccatgtgtgcccgtgatgg 1108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98126958 ccaggccaagttccttcctaacagtggtgattctaccctggccatgtgtgcccgtgatgg 98127017
Query: 1109 gcaggttcgggtagcagagttgtctgctacacagtgctgcaagaatacgaagcgtgtggc 1168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98127018 gcaggttcgggtagcagagttgtctgctacacagtgctgcaagaatacgaagcgtgtggc 98127077
Query: 1169 acagcacaagggagcatcccacaaa 1193
|||||||||||||||||||||||||
Sbjct: 98127078 acagcacaagggagcatcccacaaa 98127102
Score = 268 bits (135), Expect = 1e-68
Identities = 135/135 (100%)
Strand = Plus / Plus
Query: 1637 agtaaaaggcgtcaatttctatggccccaagagtgagtttgtggtgagcggtagtgactg 1696
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98145109 agtaaaaggcgtcaatttctatggccccaagagtgagtttgtggtgagcggtagtgactg 98145168
Query: 1697 cgggcacatcttcctctgggagaaatcatcctgccagatcattcagttcatggaggggga 1756
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98145169 cgggcacatcttcctctgggagaaatcatcctgccagatcattcagttcatggaggggga 98145228
Query: 1757 caagggaggcgtggt 1771
|||||||||||||||
Sbjct: 98145229 caagggaggcgtggt 98145243
Score = 244 bits (123), Expect = 2e-61
Identities = 123/123 (100%)
Strand = Plus / Plus
Query: 1769 ggtaaattgtcttgagccccatcctcacctgcctgtgctggcaaccagtggcctagacca 1828
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98148988 ggtaaattgtcttgagccccatcctcacctgcctgtgctggcaaccagtggcctagacca 98149047
Query: 1829 tgatgtcaagatctgggcacccacagccgaaacttccactgagcttacagggttaaagga 1888
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98149048 tgatgtcaagatctgggcacccacagccgaaacttccactgagcttacagggttaaagga 98149107
Query: 1889 tgt 1891
|||
Sbjct: 98149108 tgt 98149110
Score = 240 bits (121), Expect = 3e-60
Identities = 121/121 (100%)
Strand = Plus / Plus
Query: 262 aggttgtttcctaattgtttcattttcttcatctcctgaatccaggctggctacagtaaa 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98120610 aggttgtttcctaattgtttcattttcttcatctcctgaatccaggctggctacagtaaa 98120669
Query: 322 catcattcaagatgtccagcaaagggagcagcacagatggcaaaacagacttagctaatg 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98120670 catcattcaagatgtccagcaaagggagcagcacagatggcaaaacagacttagctaatg 98120729
Query: 382 g 382
|
Sbjct: 98120730 g 98120730
Score = 232 bits (117), Expect = 7e-58
Identities = 117/117 (100%)
Strand = Plus / Plus
Query: 1890 gtgattaagaagaacaagcgggaacgggatgaagatagcttacaccacactgacttattt 1949
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98149742 gtgattaagaagaacaagcgggaacgggatgaagatagcttacaccacactgacttattt 98149801
Query: 1950 gatagccacatgctctggttcctcatgcatcacctgagacagagacgccatcaccgg 2006
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98149802 gatagccacatgctctggttcctcatgcatcacctgagacagagacgccatcaccgg 98149858
Score = 232 bits (117), Expect = 7e-58
Identities = 117/117 (100%)
Strand = Plus / Plus
Query: 1890 gtgattaagaagaacaagcgggaacgggatgaagatagcttacaccacactgacttattt 1949
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98201742 gtgattaagaagaacaagcgggaacgggatgaagatagcttacaccacactgacttattt 98201801
Query: 1950 gatagccacatgctctggttcctcatgcatcacctgagacagagacgccatcaccgg 2006
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98201802 gatagccacatgctctggttcctcatgcatcacctgagacagagacgccatcaccgg 98201858
Score = 222 bits (112), Expect = 7e-55
Identities = 112/112 (100%)
Strand = Plus / Plus
Query: 1289 gaaattggtggtgacaaaagaaaaggagaagaaagtggggctgtatacaatctatgtgaa 1348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98134107 gaaattggtggtgacaaaagaaaaggagaagaaagtggggctgtatacaatctatgtgaa 98134166
Query: 1349 tcccgccaatacacatcagtttgcagtgggtggacgagatcagtttgtaagg 1400
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98134167 tcccgccaatacacatcagtttgcagtgggtggacgagatcagtttgtaagg 98134218
Score = 220 bits (111), Expect = 3e-54
Identities = 111/111 (100%)
Strand = Plus / Plus
Query: 1528 cagagctcctggccagttacaacgatgaagacatttacctcttcaactcctctcacagtg 1587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98143090 cagagctcctggccagttacaacgatgaagacatttacctcttcaactcctctcacagtg 98143149
Query: 1588 atggggcccagtatattaaaagatacaagggccacagaaataacgccacag 1638
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98143150 atggggcccagtatattaaaagatacaagggccacagaaataacgccacag 98143200
Score = 190 bits (96), Expect = 2e-45
Identities = 96/96 (100%)
Strand = Plus / Plus
Query: 1194 ttggccctggaaccagactctccctgtacgttcctgtctgcaggtgaagatgcagttgtc 1253
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98128291 ttggccctggaaccagactctccctgtacgttcctgtctgcaggtgaagatgcagttgtc 98128350
Query: 1254 tttaccattgaccttagacaagaccggccagcttcg 1289
||||||||||||||||||||||||||||||||||||
Sbjct: 98128351 tttaccattgaccttagacaagaccggccagcttcg 98128386
Score = 153 bits (77), Expect = 5e-34
Identities = 77/77 (100%)
Strand = Plus / Plus
Query: 1398 aggatttatgaccagaggaaaattgatgagaatgaaaacaatggagtactcaagaaattc 1457
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98141973 aggatttatgaccagaggaaaattgatgagaatgaaaacaatggagtactcaagaaattc 98142032
Query: 1458 tgtcctcatcacctggt 1474
|||||||||||||||||
Sbjct: 98142033 tgtcctcatcacctggt 98142049
Score = 151 bits (76), Expect = 2e-33
Identities = 76/76 (100%)
Strand = Plus / Plus
Query: 190 gtccttcagtgaatctacaggcctattttctcaggagctcagcctggccctacttcagtg 249
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98105500 gtccttcagtgaatctacaggcctattttctcaggagctcagcctggccctacttcagtg 98105559
Query: 250 ataaaggaggaaaggt 265
||||||||||||||||
Sbjct: 98105560 ataaaggaggaaaggt 98105575
Score = 117 bits (59), Expect = 3e-23
Identities = 59/59 (100%)
Strand = Plus / Plus
Query: 1472 ggtgaacagtgagtccaaagcaaacatcacctgtcttgtgtacagccacgacggcacag 1530
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98142523 ggtgaacagtgagtccaaagcaaacatcacctgtcttgtgtacagccacgacggcacag 98142581
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 64,106,957
Number of extensions: 457
Number of successful extensions: 457
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 454
Number of HSP's successfully gapped: 18
Length of query: 2267
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 2245
Effective length of database: 2,808,408,574
Effective search space: 6304877248630
Effective search space used: 6304877248630
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)