Animal-Genome cDNA 20110601C-007192


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007192
         (2267 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001193348.1| DDB1- and CUL4-associated factor 8 [Bos taur...  1043   0.0  
Alignment   gi|NP_001178158.1| DDB1- and CUL4-associated factor 6 [Bos taur...   143   6e-34
Alignment   gi|XP_002685864.1| PREDICTED: DDB1 and CUL4 associated factor 6...   143   6e-34
Alignment   gi|XP_002685863.1| PREDICTED: DDB1 and CUL4 associated factor 6...   143   6e-34
Alignment   gi|XP_001254045.1| PREDICTED: IQ motif and WD repeats 1 isoform...   143   6e-34
Alignment   gi|NP_001192327.1| WD and tetratricopeptide repeats protein 1 [...   125   1e-28
Alignment   gi|XP_002691087.1| PREDICTED: abnormal cell LINeage family memb...    72   2e-12
Alignment   gi|XP_001253728.2| PREDICTED: abnormal cell LINeage family memb...    72   2e-12
Alignment   gi|NP_001098945.1| WD repeat-containing protein 5 [Bos taurus].       70   1e-11
Alignment   gi|NP_001098929.1| WD repeat-containing protein 82 [Bos taurus].      62   2e-09

>ref|NP_001193348.1| DDB1- and CUL4-associated factor 8 [Bos taurus].
          Length = 591

 Score = 1043 bits (2698), Expect = 0.0
 Identities = 521/596 (87%), Positives = 525/596 (88%)
 Frame = +3

Query: 333  MSSKGSSTDGKTDLANGSLSSSPEEMSGAEEGRETSSGIEVEASDLSLSLTGDDGGPNRT 512
            MSSKGSSTDG+TDLANGSLSSSPEEMSGAEEGRETSSGIEVEASDLSLSLTGDDGGPNRT
Sbjct: 1    MSSKGSSTDGRTDLANGSLSSSPEEMSGAEEGRETSSGIEVEASDLSLSLTGDDGGPNRT 60

Query: 513  STESRGTDTESSGEDKDSDSMEDTGHYSINDENQVHDPSXXXXXXXXXXXXXXXXXXXXX 692
            STESRGTDTESSGEDKDSDSMEDTGHYS+NDE+QVHD S                     
Sbjct: 61   STESRGTDTESSGEDKDSDSMEDTGHYSVNDESQVHDRSEEEEEEEHPRRRVQRKR---- 116

Query: 693  XANRDQDSSDDERALEDWVASETSALPRPRWQALPALRERELGSSARFVYEACGARVFVQ 872
             ANRDQDSSDDERALEDWV+SETSALPRPRWQALPALRERELGSSARFVYEACGARVFVQ
Sbjct: 117  -ANRDQDSSDDERALEDWVSSETSALPRPRWQALPALRERELGSSARFVYEACGARVFVQ 175

Query: 873  RFRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDLKVVVWDWVRRQPVLDFESGHKSNVFQ 1052
            RFRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDLKVVVWDWVRRQPVLDFESGHKSNVFQ
Sbjct: 176  RFRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDLKVVVWDWVRRQPVLDFESGHKSNVFQ 235

Query: 1053 AKFLPNSGDSTLAMCARDGQVRVAELSATQCCKNTKRVAQHKGASHKLALEPDSPCTFLS 1232
            AKFLPNSGDSTLAMCARDGQVRVAELSATQCCKNTKRVAQHKGASHKLALEPDSPCTFLS
Sbjct: 236  AKFLPNSGDSTLAMCARDGQVRVAELSATQCCKNTKRVAQHKGASHKLALEPDSPCTFLS 295

Query: 1233 AGEDAVVFTIDLRQDRPASXXXXXXXXXXXXGLYTIYVNPANTHQFAVGGRDQFVRIYDQ 1412
            AGEDAVVFTIDLRQDRPAS            GLYTIYVNPANTHQFAVGGRDQFVRIYDQ
Sbjct: 296  AGEDAVVFTIDLRQDRPASKLVVTKEKEKKVGLYTIYVNPANTHQFAVGGRDQFVRIYDQ 355

Query: 1413 RKIDENENNGVLKKFCPHHLVNSESKANITCLVYSHDGTELLASYNDEDIYLFNSSHSDG 1592
            RKIDENENNGVLKKFCPHHLVNSESKANITCLVYSHDGTELLASYNDEDIYLFNSSHSDG
Sbjct: 356  RKIDENENNGVLKKFCPHHLVNSESKANITCLVYSHDGTELLASYNDEDIYLFNSSHSDG 415

Query: 1593 AQYIKRYKGHRNNATVKGVNFYGPKSEFVVSGSDCGHIFLWEKSSCQIIQFMEGDKGGVV 1772
            AQYIKRYKGHRNNATVKGVNFYGPKSEFVVSGSDCGHIFLWEKSSCQIIQFMEGDKGGVV
Sbjct: 416  AQYIKRYKGHRNNATVKGVNFYGPKSEFVVSGSDCGHIFLWEKSSCQIIQFMEGDKGGVV 475

Query: 1773 NCLEPHPHLPVLATSGLDHDVKIWAPTAETSTELTGLKDVIKKNKRERDEDSLHHTDLFD 1952
            NCLEPHPHLPVLATSGLDHDVKIWAPTAETSTELTGLKDVIKKNKRERDEDSLHHTDLFD
Sbjct: 476  NCLEPHPHLPVLATSGLDHDVKIWAPTAETSTELTGLKDVIKKNKRERDEDSLHHTDLFD 535

Query: 1953 SHMLWFLMXXXXXXXXXXXXXEPGVGXXXXXXXXXXXXXXXXXXXXXXXRVQCMPS 2120
            SHMLWFLM             EPGVG                       RVQCMPS
Sbjct: 536  SHMLWFLMHHLRQRRHHRRWREPGVGATDADSDESPSSSDTSDEEEGPDRVQCMPS 591


>ref|NP_001178158.1| DDB1- and CUL4-associated factor 6 [Bos taurus].
          Length = 877

 Score =  143 bits (361), Expect = 6e-34
 Identities = 89/281 (31%), Positives = 138/281 (49%), Gaps = 12/281 (4%)
 Frame = +3

Query: 801  LRERELG--SSARFVYEACGARVFVQRFRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDL 974
            +R+R LG    +R      G R F+QR +L+  L  H GCVNT+ +N+ G ++ SGSDD 
Sbjct: 14   VRKRSLGLEDPSRLRSRYLGRREFIQRLKLEATLNVHDGCVNTICWNETGEYILSGSDDT 73

Query: 975  KVVVWDWVRRQPVLDFESGHKSNVFQAKFLPNSGDSTLAMCARDGQVRVAELSATQCCKN 1154
            K+V+ +   R+ +    SGH++N+F AKFLP + D  +  C+ DG +    +        
Sbjct: 74   KLVISNPYSRKVLTTIRSGHRANIFSAKFLPCTNDKQIVSCSGDGVIFYTNVEQDAETNR 133

Query: 1155 TKRVAQHKGASHKLALEPDSPCTFLSAGEDAVV--FTIDLRQDRPASXXXXXXXXXXXXG 1328
              +   H G ++++   P+ P TFLS GED  V  F   ++                   
Sbjct: 134  QCQFTCHYGTTYEIMTVPNDPYTFLSCGEDGTVRWFDTRIKTSCTKEDCKDDILINCRRA 193

Query: 1329 LYTIYVNPANTHQFAVGGRDQFVRIYDQRKIDENE--------NNGVLKKFCPHHLVNSE 1484
              ++ + P   +  AVG  D  VRIYD+R +              G++ +F P HL N  
Sbjct: 194  ATSVAICPPIPYYLAVGCSDSSVRIYDRRMLGTRATGNYAGRGTTGMVARFIPSHLNNKS 253

Query: 1485 SKANITCLVYSHDGTELLASYNDEDIYLFNSSHSDGAQYIK 1607
             +  +T L YS DG E+L SY+ + IYLF+    D A+ +K
Sbjct: 254  CR--VTSLCYSEDGQEILVSYSSDYIYLFDPK-DDTARELK 291



 Score =  102 bits (254), Expect = 1e-21
 Identities = 51/106 (48%), Positives = 74/106 (69%), Gaps = 2/106 (1%)
 Frame = +3

Query: 1611 YKGHRNNAT-VKGVNFYGPKSEFVVSGSDCGHIFLWEKSSCQIIQFMEGDKGGVVNCLEP 1787
            YKGHRN+ T +K  NF+G  + FV+SGSDCGHIF+W++ + + +  +E D   VVNCL+P
Sbjct: 730  YKGHRNSRTMIKEANFWG--ANFVMSGSDCGHIFIWDRHTAEHLMLLEADNH-VVNCLQP 786

Query: 1788 HPHLPVLATSGLDHDVKIWAPTAETSTELTGLKD-VIKKNKRERDE 1922
            HP  P+LA+SG+D+D+KIW+P  E+      L D VI +N+   +E
Sbjct: 787  HPFDPILASSGIDYDIKIWSPLEESRIFNRKLADEVITRNELMLEE 832


>ref|XP_002685864.1| PREDICTED: DDB1 and CUL4 associated factor 6 isoform 2 [Bos taurus].
          Length = 857

 Score =  143 bits (361), Expect = 6e-34
 Identities = 89/281 (31%), Positives = 138/281 (49%), Gaps = 12/281 (4%)
 Frame = +3

Query: 801  LRERELG--SSARFVYEACGARVFVQRFRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDL 974
            +R+R LG    +R      G R F+QR +L+  L  H GCVNT+ +N+ G ++ SGSDD 
Sbjct: 14   VRKRSLGLEDPSRLRSRYLGRREFIQRLKLEATLNVHDGCVNTICWNETGEYILSGSDDT 73

Query: 975  KVVVWDWVRRQPVLDFESGHKSNVFQAKFLPNSGDSTLAMCARDGQVRVAELSATQCCKN 1154
            K+V+ +   R+ +    SGH++N+F AKFLP + D  +  C+ DG +    +        
Sbjct: 74   KLVISNPYSRKVLTTIRSGHRANIFSAKFLPCTNDKQIVSCSGDGVIFYTNVEQDAETNR 133

Query: 1155 TKRVAQHKGASHKLALEPDSPCTFLSAGEDAVV--FTIDLRQDRPASXXXXXXXXXXXXG 1328
              +   H G ++++   P+ P TFLS GED  V  F   ++                   
Sbjct: 134  QCQFTCHYGTTYEIMTVPNDPYTFLSCGEDGTVRWFDTRIKTSCTKEDCKDDILINCRRA 193

Query: 1329 LYTIYVNPANTHQFAVGGRDQFVRIYDQRKIDENE--------NNGVLKKFCPHHLVNSE 1484
              ++ + P   +  AVG  D  VRIYD+R +              G++ +F P HL N  
Sbjct: 194  ATSVAICPPIPYYLAVGCSDSSVRIYDRRMLGTRATGNYAGRGTTGMVARFIPSHLNNKS 253

Query: 1485 SKANITCLVYSHDGTELLASYNDEDIYLFNSSHSDGAQYIK 1607
             +  +T L YS DG E+L SY+ + IYLF+    D A+ +K
Sbjct: 254  CR--VTSLCYSEDGQEILVSYSSDYIYLFDPK-DDTARELK 291



 Score =  102 bits (254), Expect = 1e-21
 Identities = 51/106 (48%), Positives = 74/106 (69%), Gaps = 2/106 (1%)
 Frame = +3

Query: 1611 YKGHRNNAT-VKGVNFYGPKSEFVVSGSDCGHIFLWEKSSCQIIQFMEGDKGGVVNCLEP 1787
            YKGHRN+ T +K  NF+G  + FV+SGSDCGHIF+W++ + + +  +E D   VVNCL+P
Sbjct: 710  YKGHRNSRTMIKEANFWG--ANFVMSGSDCGHIFIWDRHTAEHLMLLEADNH-VVNCLQP 766

Query: 1788 HPHLPVLATSGLDHDVKIWAPTAETSTELTGLKD-VIKKNKRERDE 1922
            HP  P+LA+SG+D+D+KIW+P  E+      L D VI +N+   +E
Sbjct: 767  HPFDPILASSGIDYDIKIWSPLEESRIFNRKLADEVITRNELMLEE 812


>ref|XP_002685863.1| PREDICTED: DDB1 and CUL4 associated factor 6 isoform 1 [Bos taurus].
          Length = 877

 Score =  143 bits (361), Expect = 6e-34
 Identities = 89/281 (31%), Positives = 138/281 (49%), Gaps = 12/281 (4%)
 Frame = +3

Query: 801  LRERELG--SSARFVYEACGARVFVQRFRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDL 974
            +R+R LG    +R      G R F+QR +L+  L  H GCVNT+ +N+ G ++ SGSDD 
Sbjct: 14   VRKRSLGLEDPSRLRSRYLGRREFIQRLKLEATLNVHDGCVNTICWNETGEYILSGSDDT 73

Query: 975  KVVVWDWVRRQPVLDFESGHKSNVFQAKFLPNSGDSTLAMCARDGQVRVAELSATQCCKN 1154
            K+V+ +   R+ +    SGH++N+F AKFLP + D  +  C+ DG +    +        
Sbjct: 74   KLVISNPYSRKVLTTIRSGHRANIFSAKFLPCTNDKQIVSCSGDGVIFYTNVEQDAETNR 133

Query: 1155 TKRVAQHKGASHKLALEPDSPCTFLSAGEDAVV--FTIDLRQDRPASXXXXXXXXXXXXG 1328
              +   H G ++++   P+ P TFLS GED  V  F   ++                   
Sbjct: 134  QCQFTCHYGTTYEIMTVPNDPYTFLSCGEDGTVRWFDTRIKTSCTKEDCKDDILINCRRA 193

Query: 1329 LYTIYVNPANTHQFAVGGRDQFVRIYDQRKIDENE--------NNGVLKKFCPHHLVNSE 1484
              ++ + P   +  AVG  D  VRIYD+R +              G++ +F P HL N  
Sbjct: 194  ATSVAICPPIPYYLAVGCSDSSVRIYDRRMLGTRATGNYAGRGTTGMVARFIPSHLNNKS 253

Query: 1485 SKANITCLVYSHDGTELLASYNDEDIYLFNSSHSDGAQYIK 1607
             +  +T L YS DG E+L SY+ + IYLF+    D A+ +K
Sbjct: 254  CR--VTSLCYSEDGQEILVSYSSDYIYLFDPK-DDTARELK 291



 Score =  102 bits (254), Expect = 1e-21
 Identities = 51/106 (48%), Positives = 74/106 (69%), Gaps = 2/106 (1%)
 Frame = +3

Query: 1611 YKGHRNNAT-VKGVNFYGPKSEFVVSGSDCGHIFLWEKSSCQIIQFMEGDKGGVVNCLEP 1787
            YKGHRN+ T +K  NF+G  + FV+SGSDCGHIF+W++ + + +  +E D   VVNCL+P
Sbjct: 730  YKGHRNSRTMIKEANFWG--ANFVMSGSDCGHIFIWDRHTAEHLMLLEADNH-VVNCLQP 786

Query: 1788 HPHLPVLATSGLDHDVKIWAPTAETSTELTGLKD-VIKKNKRERDE 1922
            HP  P+LA+SG+D+D+KIW+P  E+      L D VI +N+   +E
Sbjct: 787  HPFDPILASSGIDYDIKIWSPLEESRIFNRKLADEVITRNELMLEE 832


>ref|XP_001254045.1| PREDICTED: IQ motif and WD repeats 1 isoform 2 [Bos taurus].
          Length = 857

 Score =  143 bits (361), Expect = 6e-34
 Identities = 89/281 (31%), Positives = 138/281 (49%), Gaps = 12/281 (4%)
 Frame = +3

Query: 801  LRERELG--SSARFVYEACGARVFVQRFRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDL 974
            +R+R LG    +R      G R F+QR +L+  L  H GCVNT+ +N+ G ++ SGSDD 
Sbjct: 14   VRKRSLGLEDPSRLRSRYLGRREFIQRLKLEATLNVHDGCVNTICWNETGEYILSGSDDT 73

Query: 975  KVVVWDWVRRQPVLDFESGHKSNVFQAKFLPNSGDSTLAMCARDGQVRVAELSATQCCKN 1154
            K+V+ +   R+ +    SGH++N+F AKFLP + D  +  C+ DG +    +        
Sbjct: 74   KLVISNPYSRKVLTTIRSGHRANIFSAKFLPCTNDKQIVSCSGDGVIFYTNVEQDAETNR 133

Query: 1155 TKRVAQHKGASHKLALEPDSPCTFLSAGEDAVV--FTIDLRQDRPASXXXXXXXXXXXXG 1328
              +   H G ++++   P+ P TFLS GED  V  F   ++                   
Sbjct: 134  QCQFTCHYGTTYEIMTVPNDPYTFLSCGEDGTVRWFDTRIKTSCTKEDCKDDILINCRRA 193

Query: 1329 LYTIYVNPANTHQFAVGGRDQFVRIYDQRKIDENE--------NNGVLKKFCPHHLVNSE 1484
              ++ + P   +  AVG  D  VRIYD+R +              G++ +F P HL N  
Sbjct: 194  ATSVAICPPIPYYLAVGCSDSSVRIYDRRMLGTRATGNYAGRGTTGMVARFIPSHLNNKS 253

Query: 1485 SKANITCLVYSHDGTELLASYNDEDIYLFNSSHSDGAQYIK 1607
             +  +T L YS DG E+L SY+ + IYLF+    D A+ +K
Sbjct: 254  CR--VTSLCYSEDGQEILVSYSSDYIYLFDPK-DDTARELK 291



 Score =  102 bits (254), Expect = 1e-21
 Identities = 51/106 (48%), Positives = 74/106 (69%), Gaps = 2/106 (1%)
 Frame = +3

Query: 1611 YKGHRNNAT-VKGVNFYGPKSEFVVSGSDCGHIFLWEKSSCQIIQFMEGDKGGVVNCLEP 1787
            YKGHRN+ T +K  NF+G  + FV+SGSDCGHIF+W++ + + +  +E D   VVNCL+P
Sbjct: 710  YKGHRNSRTMIKEANFWG--ANFVMSGSDCGHIFIWDRHTAEHLMLLEADNH-VVNCLQP 766

Query: 1788 HPHLPVLATSGLDHDVKIWAPTAETSTELTGLKD-VIKKNKRERDE 1922
            HP  P+LA+SG+D+D+KIW+P  E+      L D VI +N+   +E
Sbjct: 767  HPFDPILASSGIDYDIKIWSPLEESRIFNRKLADEVITRNELMLEE 812


>ref|NP_001192327.1| WD and tetratricopeptide repeats protein 1 [Bos taurus].
          Length = 678

 Score =  125 bits (315), Expect = 1e-28
 Identities = 82/270 (30%), Positives = 129/270 (47%), Gaps = 30/270 (11%)
 Frame = +3

Query: 864  FVQRFRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDLKVVVWDWVRRQPVLDFESGHKSN 1043
            F++R  L+  L+GH+GCVN L +N++G  LASGSDD   +VWD +  + +L   +GH +N
Sbjct: 33   FIRRLGLEAELQGHSGCVNCLEWNEKGDLLASGSDDQHTIVWDPLHHKKLLSMHTGHTAN 92

Query: 1044 VFQAKFLPNSGDSTLAMCARDGQVRVAELSATQCCKNTKRVAQHKGASHKLALEPDSPCT 1223
            +F  KFLP++GD  L   A D +V V +L+  +          H     ++A  P  P T
Sbjct: 93   IFSVKFLPHAGDRILITGAADSKVHVHDLTVKE---TIHMFGDHTNRVKRIATAPMWPNT 149

Query: 1224 FLSAGEDAVVFTIDLRQDRPASXXXXXXXXXXXXGLYT--IYVNPANTHQFAVGGRDQFV 1397
            F SA ED ++   DLR++   S             +    + VNP + +  AVG    FV
Sbjct: 150  FWSAAEDGLIRQYDLRENSKHSEVLIDLTEYCGQLVEAKCLTVNPQDNNCLAVGASGPFV 209

Query: 1398 RIYDQRKIDENEN---------------------NGVLKKFCPHHL------VNSESKAN 1496
            R+YD R I  +                       +G  + +   HL       N+  +  
Sbjct: 210  RLYDIRMIHNHRKSMKQSPSAGVHTFCDRQKPLPDGAAQYYVAGHLPVKLPDYNNRLRVL 269

Query: 1497 I-TCLVYSHDGTELLASYNDEDIYLFNSSH 1583
            + T + +S +GTELL +   E +YLF+ ++
Sbjct: 270  VATYVAFSPNGTELLVNMGGEQVYLFDLTY 299



 Score = 92.8 bits (229), Expect = 1e-18
 Identities = 51/136 (37%), Positives = 82/136 (60%), Gaps = 6/136 (4%)
 Frame = +3

Query: 1542 SYNDEDIYLFNSSHSDGAQYIKRYKGHRNNAT-VKGVNFYGPKSEFVVSGSDCGHIFLWE 1718
            S +++++ L   S+     Y  RY GH N  T +K  NF+G  ++++VSGSD G  F+WE
Sbjct: 512  SISEDEMVLRERSYD----YQFRYCGHCNTTTDIKEANFFGSNAQYIVSGSDDGSFFVWE 567

Query: 1719 KSSCQIIQFMEGDKGGVVNCLEPHPHLPVLATSGLDHDVKIWAPTAETSTELTG-----L 1883
            K +  +++ ++GD+  +VNCL+PHP    LATSG+D  V++W P  E S +LTG     +
Sbjct: 568  KETTNLVRVLQGDE-SIVNCLQPHPSYCFLATSGIDPVVRLWNPRPE-SEDLTGRVVEDM 625

Query: 1884 KDVIKKNKRERDEDSL 1931
            +   + N+R  + D L
Sbjct: 626  EGASQANQRRMNADPL 641


>ref|XP_002691087.1| PREDICTED: abnormal cell LINeage family member (lin-53)-like [Bos
            taurus].
          Length = 932

 Score = 72.4 bits (176), Expect = 2e-12
 Identities = 73/322 (22%), Positives = 145/322 (45%), Gaps = 19/322 (5%)
 Frame = +3

Query: 942  GTW-----LASGSDDLKVVVWDWVR----RQPVLDFESGHKSNVFQAKFLPNSGDSTLAM 1094
            G+W     L    DD +V++W   +    R   +  +  H SN+F   F  NSG++ +  
Sbjct: 46   GSWQSIYRLRERGDDRRVLLWHMEQAIHSRVKPIQLKGEHHSNIFCLAF--NSGNTKVFS 103

Query: 1095 CARDGQVRVAELSATQCCKNTKRVAQHKGASHKLALEPDSPCTFLSAGEDAVVFTIDLRQ 1274
               D QV + ++ +++    T  V  H+ A + L++ P +   F S+ +D  V   D+R+
Sbjct: 104  GGNDEQVILHDVESSE----TLDVFAHEDAVYGLSVSPVNDNIFASSSDDGRVLIWDIRE 159

Query: 1275 DRPASXXXXXXXXXXXXGLYTIYVNPANTHQFAVGGRDQFVRIYDQRKIDENENNGVLKK 1454
               +               +++  NP      A     + V ++D RK   +     L +
Sbjct: 160  ---SPHGEPFCLANYPSAFHSVMFNPVEPRLLATANSKEGVGLWDIRKPQSS-----LLR 211

Query: 1455 FCPHHLVNSESKANITCLVYSHDGTELLASYNDEDIYLFNSSHSDGAQYIKRYKGHRNNA 1634
            +  +  + S          ++ +GT+LLA        L++  HS    +    +G+ N+ 
Sbjct: 212  YGGNLSLQSAMSVR-----FNSNGTQLLALRRRLPPVLYDI-HSRLPVFQFDNQGYFNSC 265

Query: 1635 TVKGVNFYGPKSEFVVSGSDCGHIFLW----EKSSCQIIQFMEGD----KG--GVVNCLE 1784
            T+K   F G + ++++SGSD  ++++W    +  +  I + + G     KG   +VN + 
Sbjct: 266  TMKSCCFAGDRDQYILSGSDDFNLYMWRIPADPEAGGIGRVVNGAFMVLKGHRSIVNQVR 325

Query: 1785 PHPHLPVLATSGLDHDVKIWAP 1850
             +PH  ++ +SG++  +KIW+P
Sbjct: 326  FNPHTYMICSSGVEKIIKIWSP 347


>ref|XP_001253728.2| PREDICTED: abnormal cell LINeage family member (lin-53)-like [Bos
            taurus].
          Length = 932

 Score = 72.4 bits (176), Expect = 2e-12
 Identities = 73/322 (22%), Positives = 145/322 (45%), Gaps = 19/322 (5%)
 Frame = +3

Query: 942  GTW-----LASGSDDLKVVVWDWVR----RQPVLDFESGHKSNVFQAKFLPNSGDSTLAM 1094
            G+W     L    DD +V++W   +    R   +  +  H SN+F   F  NSG++ +  
Sbjct: 46   GSWQSIYRLRERGDDRRVLLWHMEQAIHSRVKPIQLKGEHHSNIFCLAF--NSGNTKVFS 103

Query: 1095 CARDGQVRVAELSATQCCKNTKRVAQHKGASHKLALEPDSPCTFLSAGEDAVVFTIDLRQ 1274
               D QV + ++ +++    T  V  H+ A + L++ P +   F S+ +D  V   D+R+
Sbjct: 104  GGNDEQVILHDVESSE----TLDVFAHEDAVYGLSVSPVNDNIFASSSDDGRVLIWDIRE 159

Query: 1275 DRPASXXXXXXXXXXXXGLYTIYVNPANTHQFAVGGRDQFVRIYDQRKIDENENNGVLKK 1454
               +               +++  NP      A     + V ++D RK   +     L +
Sbjct: 160  ---SPHGEPFCLANYPSAFHSVMFNPVEPRLLATANSKEGVGLWDIRKPQSS-----LLR 211

Query: 1455 FCPHHLVNSESKANITCLVYSHDGTELLASYNDEDIYLFNSSHSDGAQYIKRYKGHRNNA 1634
            +  +  + S          ++ +GT+LLA        L++  HS    +    +G+ N+ 
Sbjct: 212  YGGNLSLQSAMSVR-----FNSNGTQLLALRRRLPPVLYDI-HSRLPVFQFDNQGYFNSC 265

Query: 1635 TVKGVNFYGPKSEFVVSGSDCGHIFLW----EKSSCQIIQFMEGD----KG--GVVNCLE 1784
            T+K   F G + ++++SGSD  ++++W    +  +  I + + G     KG   +VN + 
Sbjct: 266  TMKSCCFAGDRDQYILSGSDDFNLYMWRIPADPEAGGIGRVVNGAFMVLKGHRSIVNQVR 325

Query: 1785 PHPHLPVLATSGLDHDVKIWAP 1850
             +PH  ++ +SG++  +KIW+P
Sbjct: 326  FNPHTYMICSSGVEKIIKIWSP 347


>ref|NP_001098945.1| WD repeat-containing protein 5 [Bos taurus].
          Length = 334

 Score = 69.7 bits (169), Expect = 1e-11
 Identities = 76/333 (22%), Positives = 142/333 (42%), Gaps = 10/333 (3%)
 Frame = +3

Query: 876  FRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDLKVVVWDWVRRQPVLDFE---SGHKSNV 1046
            + L+  L GHT  V+++ F+  G WLAS S D  + +W     +    FE   SGHK  +
Sbjct: 35   YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK----FEKTISGHKLGI 90

Query: 1047 FQAKFLPNSGDSTLAMCARDGQ-VRVAELSATQCCKNTKRVAQHKGASHKLALEPDSPCT 1223
                +   S DS L + A D + +++ ++S+ +C K  K    H          P S   
Sbjct: 91   SDVAW---SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKG---HSNYVFCCNFNPQSNLI 144

Query: 1224 FLSAGEDAV----VFTIDLRQDRPASXXXXXXXXXXXXGLYTIYVNPANTHQFAVGGRDQ 1391
               + +++V    V T    +  PA             G   +               D 
Sbjct: 145  VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS-----------SSYDG 193

Query: 1392 FVRIYDQRKIDENENNGVLKKFCPHHLVNSESKANITCLVYSHDGTELLASYNDEDIYLF 1571
              RI+D                C   L++ ++   ++ + +S +G  +LA+  D  + L+
Sbjct: 194  LCRIWDTASGQ-----------CLKTLIDDDNPP-VSFVKFSPNGKYILAATLDNTLKLW 241

Query: 1572 NSSHSDGAQYIKRYKGHRNNATVKGVNFYGPKSEFVVSGSDCGHIFLWEKSSCQIIQFME 1751
            + S     + +K Y GH+N       NF     +++VSGS+   +++W   + +I+Q ++
Sbjct: 242  DYSKG---KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 298

Query: 1752 GDKGGVVNCLEPHPHLPVLATSGLDHD--VKIW 1844
            G    V++    HP   ++A++ L++D  +K+W
Sbjct: 299  GHTDVVIS-TACHPTENIIASAALENDKTIKLW 330


>ref|NP_001098929.1| WD repeat-containing protein 82 [Bos taurus].
          Length = 313

 Score = 62.4 bits (150), Expect = 2e-09
 Identities = 74/338 (21%), Positives = 131/338 (38%), Gaps = 7/338 (2%)
 Frame = +3

Query: 867  VQRFRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDLKVVVWDWVRRQPVLDFESGHKSNV 1046
            ++ FR+      ++  +N   F+  G  + S SDD  +V++D    +P     S  K  V
Sbjct: 8    LRSFRVAKVFRENSDKINCFDFSPNGETVISSSDDDSIVLYDCQEGKPKRTLYS-KKYGV 66

Query: 1047 FQAKFLPNSGDSTLAMCARDGQVRVAELSATQCCKNTKRVAQHKGASHKLALEPDSPC-- 1220
               ++   +     +    D  +R   L       + K +    G S ++     SP   
Sbjct: 67   DLIRYTHAANTVVYSSNKIDDTIRYLSLH------DNKYIRYFPGHSKRVVALSMSPVDD 120

Query: 1221 TFLSAGEDAVVFTIDLRQDRPASXXXXXXXXXXXXGLYTIYVNPANTHQ-----FAVGGR 1385
            TF+S   D  +   DLR                  GL  +   P  +       FA G  
Sbjct: 121  TFISGSLDKTIRLWDLRSPN-------------CQGLMHLQGKPVCSFDPEGLIFAAGVN 167

Query: 1386 DQFVRIYDQRKIDENENNGVLKKFCPHHLVNSESKANITCLVYSHDGTELLASYNDEDIY 1565
             + V++YD R  D+    G    F   +    +     T L +S+DG  +L S N   I 
Sbjct: 168  SEMVKLYDLRSFDK----GPFATFKMQY----DRTCEWTGLKFSNDGKLILISTNGSFIR 219

Query: 1566 LFNSSHSDGAQYIKRYKGHRNNATVKGVNFYGPKSEFVVSGSDCGHIFLWEKSSCQIIQF 1745
            L ++        +  + G+ N+  V     + P S+F++ GS+ G I +W   S   +  
Sbjct: 220  LIDAFKG---VVMHTFGGYANSKAVTLEASFTPDSQFIMIGSEDGKIHVWNGESGIKVAV 276

Query: 1746 MEGDKGGVVNCLEPHPHLPVLATSGLDHDVKIWAPTAE 1859
            ++G   G + CL+ +P     A++    ++  W PT +
Sbjct: 277  LDGKHTGPITCLQFNPKFMTFASA--CSNMAFWLPTID 312


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 86,189,586
Number of extensions: 2512460
Number of successful extensions: 10735
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 10583
Number of HSP's successfully gapped: 16
Length of query: 755
Length of database: 17,681,374
Length adjustment: 110
Effective length of query: 645
Effective length of database: 14,041,694
Effective search space: 9056892630
Effective search space used: 9056892630
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007192
         (2267 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_536129.2| PREDICTED: similar to H326 [Canis familiaris].      1046   0.0  
Alignment   gi|XP_548912.2| PREDICTED: similar to H326 [Canis familiaris].       757   0.0  
Alignment   gi|XP_862672.1| PREDICTED: similar to IQ motif and WD repeats 1...   143   6e-34
Alignment   gi|XP_862648.1| PREDICTED: similar to IQ motif and WD repeats 1...   143   6e-34
Alignment   gi|XP_537208.2| PREDICTED: similar to IQ motif and WD repeats 1...   143   6e-34
Alignment   gi|XP_862605.1| PREDICTED: similar to IQ motif and WD repeats 1...   143   6e-34
Alignment   gi|XP_862582.1| PREDICTED: similar to IQ motif and WD repeats 1...   143   6e-34
Alignment   gi|XP_544473.2| PREDICTED: similar to WD and tetratricopeptide ...   125   1e-28
Alignment   gi|XP_850117.1| PREDICTED: similar to WD repeat domain 5 [Canis...    69   3e-11
Alignment   gi|XP_547871.2| PREDICTED: similar to WD-repeat protein 22 (Bre...    67   7e-11

>ref|XP_536129.2| PREDICTED: similar to H326 [Canis familiaris].
          Length = 596

 Score = 1046 bits (2704), Expect = 0.0
 Identities = 520/596 (87%), Positives = 523/596 (87%)
 Frame = +3

Query: 333  MSSKGSSTDGKTDLANGSLSSSPEEMSGAEEGRETSSGIEVEASDLSLSLTGDDGGPNRT 512
            MSSKGSS DGKTDLANGSLSSSPEEMSGAEEGRETSSGIEVEASDLSLSLTGDDGGPNRT
Sbjct: 1    MSSKGSSADGKTDLANGSLSSSPEEMSGAEEGRETSSGIEVEASDLSLSLTGDDGGPNRT 60

Query: 513  STESRGTDTESSGEDKDSDSMEDTGHYSINDENQVHDPSXXXXXXXXXXXXXXXXXXXXX 692
            ST SRGTDTESSGEDKDSDSMEDTGHYSINDENQVHD S                     
Sbjct: 61   STGSRGTDTESSGEDKDSDSMEDTGHYSINDENQVHDRSEEEEEEEEEEEEHPRRRVQRK 120

Query: 693  XANRDQDSSDDERALEDWVASETSALPRPRWQALPALRERELGSSARFVYEACGARVFVQ 872
             ANRDQDSSDDERALEDWV+SETSALPRPRWQALPALRERELGSSARFVYEACGARVFVQ
Sbjct: 121  RANRDQDSSDDERALEDWVSSETSALPRPRWQALPALRERELGSSARFVYEACGARVFVQ 180

Query: 873  RFRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDLKVVVWDWVRRQPVLDFESGHKSNVFQ 1052
            RFRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDLKVVVWDWVRRQPVLDFESGHKSNVFQ
Sbjct: 181  RFRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDLKVVVWDWVRRQPVLDFESGHKSNVFQ 240

Query: 1053 AKFLPNSGDSTLAMCARDGQVRVAELSATQCCKNTKRVAQHKGASHKLALEPDSPCTFLS 1232
            AKFLPNSGDSTLAMCARDGQVRVAELSATQCCKNTKRVAQHKGASHKLALEPDSPCTFLS
Sbjct: 241  AKFLPNSGDSTLAMCARDGQVRVAELSATQCCKNTKRVAQHKGASHKLALEPDSPCTFLS 300

Query: 1233 AGEDAVVFTIDLRQDRPASXXXXXXXXXXXXGLYTIYVNPANTHQFAVGGRDQFVRIYDQ 1412
            AGEDAVVFTIDLRQDRPAS            GLYTIYVNPANTHQFAVGGRDQFVRIYDQ
Sbjct: 301  AGEDAVVFTIDLRQDRPASKLVVTKEKEKKVGLYTIYVNPANTHQFAVGGRDQFVRIYDQ 360

Query: 1413 RKIDENENNGVLKKFCPHHLVNSESKANITCLVYSHDGTELLASYNDEDIYLFNSSHSDG 1592
            RKIDENENNGVLKKFCPHHLVNSESKANITCLVYSHDGTELLASYNDEDIYLFNSSHSDG
Sbjct: 361  RKIDENENNGVLKKFCPHHLVNSESKANITCLVYSHDGTELLASYNDEDIYLFNSSHSDG 420

Query: 1593 AQYIKRYKGHRNNATVKGVNFYGPKSEFVVSGSDCGHIFLWEKSSCQIIQFMEGDKGGVV 1772
            AQY+KRYKGHRNNATVKGVNFYGPKSEFVVSGSDCGHIFLWEKSSCQI+QFMEGDKGGVV
Sbjct: 421  AQYVKRYKGHRNNATVKGVNFYGPKSEFVVSGSDCGHIFLWEKSSCQIVQFMEGDKGGVV 480

Query: 1773 NCLEPHPHLPVLATSGLDHDVKIWAPTAETSTELTGLKDVIKKNKRERDEDSLHHTDLFD 1952
            NCLEPHPHLPVLATSGLDHDVKIWAPTAETSTELTGLKDVIKKNKRERDEDSLHHTDLFD
Sbjct: 481  NCLEPHPHLPVLATSGLDHDVKIWAPTAETSTELTGLKDVIKKNKRERDEDSLHHTDLFD 540

Query: 1953 SHMLWFLMXXXXXXXXXXXXXEPGVGXXXXXXXXXXXXXXXXXXXXXXXRVQCMPS 2120
            SHMLWFLM             EPGVG                       RVQCMPS
Sbjct: 541  SHMLWFLMHHLRQRRHHRRWREPGVGATDADSDESPSSSDTSDEEEGPDRVQCMPS 596


>ref|XP_548912.2| PREDICTED: similar to H326 [Canis familiaris].
          Length = 520

 Score =  757 bits (1955), Expect = 0.0
 Identities = 363/475 (76%), Positives = 396/475 (83%)
 Frame = +3

Query: 696  ANRDQDSSDDERALEDWVASETSALPRPRWQALPALRERELGSSARFVYEACGARVFVQR 875
            AN DQ  SD++RALE+WV SETS LPRPRWQ + ALRER+LGSSARFVYEACGAR+FVQR
Sbjct: 46   ANYDQYLSDEDRALEEWVTSETSTLPRPRWQIVSALRERQLGSSARFVYEACGARLFVQR 105

Query: 876  FRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDLKVVVWDWVRRQPVLDFESGHKSNVFQA 1055
            F L H LEGH GCVNT+HFNQRGTWLAS SDDLKV+VWDWVR+ PVL+F SGHK+NVFQA
Sbjct: 106  FHLLHELEGHHGCVNTVHFNQRGTWLASSSDDLKVIVWDWVRKHPVLEFMSGHKNNVFQA 165

Query: 1056 KFLPNSGDSTLAMCARDGQVRVAELSATQCCKNTKRVAQHKGASHKLALEPDSPCTFLSA 1235
            KFLPN GDSTLAMCARDGQVR+AELSA   CKNTKRVAQH+GASHKLALEPDSP  FL++
Sbjct: 166  KFLPNCGDSTLAMCARDGQVRIAELSAIPHCKNTKRVAQHRGASHKLALEPDSPFKFLTS 225

Query: 1236 GEDAVVFTIDLRQDRPASXXXXXXXXXXXXGLYTIYVNPANTHQFAVGGRDQFVRIYDQR 1415
            GEDAVVF IDLRQ RPAS            GLYTI+VNPANT+QFAVGGRDQFVRIYDQR
Sbjct: 226  GEDAVVFAIDLRQGRPASRVVVTKEREKKVGLYTIHVNPANTYQFAVGGRDQFVRIYDQR 285

Query: 1416 KIDENENNGVLKKFCPHHLVNSESKANITCLVYSHDGTELLASYNDEDIYLFNSSHSDGA 1595
            KIDENENNGVLKKFCPHHLVN ESKANITCLVYSHDGTELLASYNDEDIYLFNSS  DGA
Sbjct: 286  KIDENENNGVLKKFCPHHLVNCESKANITCLVYSHDGTELLASYNDEDIYLFNSSDGDGA 345

Query: 1596 QYIKRYKGHRNNATVKGVNFYGPKSEFVVSGSDCGHIFLWEKSSCQIIQFMEGDKGGVVN 1775
            QY+K+YKGHRNNAT+KGVNFYGP+SEFVVSGSDCGHIFLWEKSSCQI+QFMEGDKGG +N
Sbjct: 346  QYVKKYKGHRNNATIKGVNFYGPRSEFVVSGSDCGHIFLWEKSSCQIVQFMEGDKGGTIN 405

Query: 1776 CLEPHPHLPVLATSGLDHDVKIWAPTAETSTELTGLKDVIKKNKRERDEDSLHHTDLFDS 1955
            CLEPHP+LPV+ATSGLDH+ KIWAPTAE +TELTGLK++IK+NK+ERDED +HHTDLFDS
Sbjct: 406  CLEPHPYLPVMATSGLDHNAKIWAPTAEATTELTGLKNMIKRNKQERDEDRMHHTDLFDS 465

Query: 1956 HMLWFLMXXXXXXXXXXXXXEPGVGXXXXXXXXXXXXXXXXXXXXXXXRVQCMPS 2120
            HMLWFLM              PGVG                        VQC+PS
Sbjct: 466  HMLWFLMRHLTQRGHHQRQRAPGVGVMDAESDESSTTSSSSEEEENQDHVQCLPS 520


>ref|XP_862672.1| PREDICTED: similar to IQ motif and WD repeats 1 isoform a isoform 5
            [Canis familiaris].
          Length = 879

 Score =  143 bits (361), Expect = 6e-34
 Identities = 89/281 (31%), Positives = 138/281 (49%), Gaps = 12/281 (4%)
 Frame = +3

Query: 801  LRERELG--SSARFVYEACGARVFVQRFRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDL 974
            +R+R LG    +R      G R F+QR +L+  L  H GCVNT+ +N+ G ++ SGSDD 
Sbjct: 14   VRKRSLGLEDPSRLRSRYLGRREFIQRLKLEATLNVHDGCVNTICWNETGEYILSGSDDT 73

Query: 975  KVVVWDWVRRQPVLDFESGHKSNVFQAKFLPNSGDSTLAMCARDGQVRVAELSATQCCKN 1154
            K+V+ +   R+ +    SGH++N+F AKFLP + D  +  C+ DG +    +        
Sbjct: 74   KLVISNPYSRKVLTTIRSGHRANIFSAKFLPCTNDKQIVSCSGDGVIFYTNVEQDAETNR 133

Query: 1155 TKRVAQHKGASHKLALEPDSPCTFLSAGEDAVV--FTIDLRQDRPASXXXXXXXXXXXXG 1328
              +   H G ++++   P+ P TFLS GED  V  F   ++                   
Sbjct: 134  QCQFTCHYGTTYEIMTVPNDPYTFLSCGEDGTVRWFDTRIKTSCTKEDCKDDILINCRRA 193

Query: 1329 LYTIYVNPANTHQFAVGGRDQFVRIYDQRKIDENE--------NNGVLKKFCPHHLVNSE 1484
              ++ + P   +  AVG  D  VRIYD+R +              G++ +F P HL N  
Sbjct: 194  ATSVAICPPIPYYLAVGCSDSSVRIYDRRMLGTRATGNYAGRGTTGMVARFIPSHLNNKS 253

Query: 1485 SKANITCLVYSHDGTELLASYNDEDIYLFNSSHSDGAQYIK 1607
             +  +T L YS DG E+L SY+ + IYLF+    D A+ +K
Sbjct: 254  CR--VTSLCYSEDGQEILVSYSSDYIYLFDPK-DDTARELK 291



 Score =  102 bits (254), Expect = 2e-21
 Identities = 51/106 (48%), Positives = 74/106 (69%), Gaps = 2/106 (1%)
 Frame = +3

Query: 1611 YKGHRNNAT-VKGVNFYGPKSEFVVSGSDCGHIFLWEKSSCQIIQFMEGDKGGVVNCLEP 1787
            YKGHRN+ T +K  NF+G  + FV+SGSDCGHIF+W++ + + +  +E D   VVNCL+P
Sbjct: 732  YKGHRNSRTMIKEANFWG--ANFVMSGSDCGHIFIWDRHTAEHLMLLEADNH-VVNCLQP 788

Query: 1788 HPHLPVLATSGLDHDVKIWAPTAETSTELTGLKD-VIKKNKRERDE 1922
            HP  P+LA+SG+D+D+KIW+P  E+      L D VI +N+   +E
Sbjct: 789  HPFDPILASSGIDYDIKIWSPLEESRIFNRKLADEVITRNELMLEE 834


>ref|XP_862648.1| PREDICTED: similar to IQ motif and WD repeats 1 isoform a isoform 4
            [Canis familiaris].
          Length = 936

 Score =  143 bits (361), Expect = 6e-34
 Identities = 89/281 (31%), Positives = 138/281 (49%), Gaps = 12/281 (4%)
 Frame = +3

Query: 801  LRERELG--SSARFVYEACGARVFVQRFRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDL 974
            +R+R LG    +R      G R F+QR +L+  L  H GCVNT+ +N+ G ++ SGSDD 
Sbjct: 14   VRKRSLGLEDPSRLRSRYLGRREFIQRLKLEATLNVHDGCVNTICWNETGEYILSGSDDT 73

Query: 975  KVVVWDWVRRQPVLDFESGHKSNVFQAKFLPNSGDSTLAMCARDGQVRVAELSATQCCKN 1154
            K+V+ +   R+ +    SGH++N+F AKFLP + D  +  C+ DG +    +        
Sbjct: 74   KLVISNPYSRKVLTTIRSGHRANIFSAKFLPCTNDKQIVSCSGDGVIFYTNVEQDAETNR 133

Query: 1155 TKRVAQHKGASHKLALEPDSPCTFLSAGEDAVV--FTIDLRQDRPASXXXXXXXXXXXXG 1328
              +   H G ++++   P+ P TFLS GED  V  F   ++                   
Sbjct: 134  QCQFTCHYGTTYEIMTVPNDPYTFLSCGEDGTVRWFDTRIKTSCTKEDCKDDILINCRRA 193

Query: 1329 LYTIYVNPANTHQFAVGGRDQFVRIYDQRKIDENE--------NNGVLKKFCPHHLVNSE 1484
              ++ + P   +  AVG  D  VRIYD+R +              G++ +F P HL N  
Sbjct: 194  ATSVAICPPIPYYLAVGCSDSSVRIYDRRMLGTRATGNYAGRGTTGMVARFIPSHLNNKS 253

Query: 1485 SKANITCLVYSHDGTELLASYNDEDIYLFNSSHSDGAQYIK 1607
             +  +T L YS DG E+L SY+ + IYLF+    D A+ +K
Sbjct: 254  CR--VTSLCYSEDGQEILVSYSSDYIYLFDPK-DDTARELK 291



 Score =  102 bits (254), Expect = 2e-21
 Identities = 51/106 (48%), Positives = 74/106 (69%), Gaps = 2/106 (1%)
 Frame = +3

Query: 1611 YKGHRNNAT-VKGVNFYGPKSEFVVSGSDCGHIFLWEKSSCQIIQFMEGDKGGVVNCLEP 1787
            YKGHRN+ T +K  NF+G  + FV+SGSDCGHIF+W++ + + +  +E D   VVNCL+P
Sbjct: 789  YKGHRNSRTMIKEANFWG--ANFVMSGSDCGHIFIWDRHTAEHLMLLEADNH-VVNCLQP 845

Query: 1788 HPHLPVLATSGLDHDVKIWAPTAETSTELTGLKD-VIKKNKRERDE 1922
            HP  P+LA+SG+D+D+KIW+P  E+      L D VI +N+   +E
Sbjct: 846  HPFDPILASSGIDYDIKIWSPLEESRIFNRKLADEVITRNELMLEE 891


>ref|XP_537208.2| PREDICTED: similar to IQ motif and WD repeats 1 isoform a isoform 1
            [Canis familiaris].
          Length = 950

 Score =  143 bits (361), Expect = 6e-34
 Identities = 89/281 (31%), Positives = 138/281 (49%), Gaps = 12/281 (4%)
 Frame = +3

Query: 801  LRERELG--SSARFVYEACGARVFVQRFRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDL 974
            +R+R LG    +R      G R F+QR +L+  L  H GCVNT+ +N+ G ++ SGSDD 
Sbjct: 14   VRKRSLGLEDPSRLRSRYLGRREFIQRLKLEATLNVHDGCVNTICWNETGEYILSGSDDT 73

Query: 975  KVVVWDWVRRQPVLDFESGHKSNVFQAKFLPNSGDSTLAMCARDGQVRVAELSATQCCKN 1154
            K+V+ +   R+ +    SGH++N+F AKFLP + D  +  C+ DG +    +        
Sbjct: 74   KLVISNPYSRKVLTTIRSGHRANIFSAKFLPCTNDKQIVSCSGDGVIFYTNVEQDAETNR 133

Query: 1155 TKRVAQHKGASHKLALEPDSPCTFLSAGEDAVV--FTIDLRQDRPASXXXXXXXXXXXXG 1328
              +   H G ++++   P+ P TFLS GED  V  F   ++                   
Sbjct: 134  QCQFTCHYGTTYEIMTVPNDPYTFLSCGEDGTVRWFDTRIKTSCTKEDCKDDILINCRRA 193

Query: 1329 LYTIYVNPANTHQFAVGGRDQFVRIYDQRKIDENE--------NNGVLKKFCPHHLVNSE 1484
              ++ + P   +  AVG  D  VRIYD+R +              G++ +F P HL N  
Sbjct: 194  ATSVAICPPIPYYLAVGCSDSSVRIYDRRMLGTRATGNYAGRGTTGMVARFIPSHLNNKS 253

Query: 1485 SKANITCLVYSHDGTELLASYNDEDIYLFNSSHSDGAQYIK 1607
             +  +T L YS DG E+L SY+ + IYLF+    D A+ +K
Sbjct: 254  CR--VTSLCYSEDGQEILVSYSSDYIYLFDPK-DDTARELK 291



 Score =  102 bits (254), Expect = 2e-21
 Identities = 51/106 (48%), Positives = 74/106 (69%), Gaps = 2/106 (1%)
 Frame = +3

Query: 1611 YKGHRNNAT-VKGVNFYGPKSEFVVSGSDCGHIFLWEKSSCQIIQFMEGDKGGVVNCLEP 1787
            YKGHRN+ T +K  NF+G  + FV+SGSDCGHIF+W++ + + +  +E D   VVNCL+P
Sbjct: 803  YKGHRNSRTMIKEANFWG--ANFVMSGSDCGHIFIWDRHTAEHLMLLEADNH-VVNCLQP 859

Query: 1788 HPHLPVLATSGLDHDVKIWAPTAETSTELTGLKD-VIKKNKRERDE 1922
            HP  P+LA+SG+D+D+KIW+P  E+      L D VI +N+   +E
Sbjct: 860  HPFDPILASSGIDYDIKIWSPLEESRIFNRKLADEVITRNELMLEE 905


>ref|XP_862605.1| PREDICTED: similar to IQ motif and WD repeats 1 isoform a isoform 3
            [Canis familiaris].
          Length = 472

 Score =  143 bits (361), Expect = 6e-34
 Identities = 89/281 (31%), Positives = 138/281 (49%), Gaps = 12/281 (4%)
 Frame = +3

Query: 801  LRERELG--SSARFVYEACGARVFVQRFRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDL 974
            +R+R LG    +R      G R F+QR +L+  L  H GCVNT+ +N+ G ++ SGSDD 
Sbjct: 14   VRKRSLGLEDPSRLRSRYLGRREFIQRLKLEATLNVHDGCVNTICWNETGEYILSGSDDT 73

Query: 975  KVVVWDWVRRQPVLDFESGHKSNVFQAKFLPNSGDSTLAMCARDGQVRVAELSATQCCKN 1154
            K+V+ +   R+ +    SGH++N+F AKFLP + D  +  C+ DG +    +        
Sbjct: 74   KLVISNPYSRKVLTTIRSGHRANIFSAKFLPCTNDKQIVSCSGDGVIFYTNVEQDAETNR 133

Query: 1155 TKRVAQHKGASHKLALEPDSPCTFLSAGEDAVV--FTIDLRQDRPASXXXXXXXXXXXXG 1328
              +   H G ++++   P+ P TFLS GED  V  F   ++                   
Sbjct: 134  QCQFTCHYGTTYEIMTVPNDPYTFLSCGEDGTVRWFDTRIKTSCTKEDCKDDILINCRRA 193

Query: 1329 LYTIYVNPANTHQFAVGGRDQFVRIYDQRKIDENE--------NNGVLKKFCPHHLVNSE 1484
              ++ + P   +  AVG  D  VRIYD+R +              G++ +F P HL N  
Sbjct: 194  ATSVAICPPIPYYLAVGCSDSSVRIYDRRMLGTRATGNYAGRGTTGMVARFIPSHLNNKS 253

Query: 1485 SKANITCLVYSHDGTELLASYNDEDIYLFNSSHSDGAQYIK 1607
             +  +T L YS DG E+L SY+ + IYLF+    D A+ +K
Sbjct: 254  CR--VTSLCYSEDGQEILVSYSSDYIYLFDPK-DDTARELK 291


>ref|XP_862582.1| PREDICTED: similar to IQ motif and WD repeats 1 isoform b isoform 2
            [Canis familiaris].
          Length = 859

 Score =  143 bits (361), Expect = 6e-34
 Identities = 89/281 (31%), Positives = 138/281 (49%), Gaps = 12/281 (4%)
 Frame = +3

Query: 801  LRERELG--SSARFVYEACGARVFVQRFRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDL 974
            +R+R LG    +R      G R F+QR +L+  L  H GCVNT+ +N+ G ++ SGSDD 
Sbjct: 14   VRKRSLGLEDPSRLRSRYLGRREFIQRLKLEATLNVHDGCVNTICWNETGEYILSGSDDT 73

Query: 975  KVVVWDWVRRQPVLDFESGHKSNVFQAKFLPNSGDSTLAMCARDGQVRVAELSATQCCKN 1154
            K+V+ +   R+ +    SGH++N+F AKFLP + D  +  C+ DG +    +        
Sbjct: 74   KLVISNPYSRKVLTTIRSGHRANIFSAKFLPCTNDKQIVSCSGDGVIFYTNVEQDAETNR 133

Query: 1155 TKRVAQHKGASHKLALEPDSPCTFLSAGEDAVV--FTIDLRQDRPASXXXXXXXXXXXXG 1328
              +   H G ++++   P+ P TFLS GED  V  F   ++                   
Sbjct: 134  QCQFTCHYGTTYEIMTVPNDPYTFLSCGEDGTVRWFDTRIKTSCTKEDCKDDILINCRRA 193

Query: 1329 LYTIYVNPANTHQFAVGGRDQFVRIYDQRKIDENE--------NNGVLKKFCPHHLVNSE 1484
              ++ + P   +  AVG  D  VRIYD+R +              G++ +F P HL N  
Sbjct: 194  ATSVAICPPIPYYLAVGCSDSSVRIYDRRMLGTRATGNYAGRGTTGMVARFIPSHLNNKS 253

Query: 1485 SKANITCLVYSHDGTELLASYNDEDIYLFNSSHSDGAQYIK 1607
             +  +T L YS DG E+L SY+ + IYLF+    D A+ +K
Sbjct: 254  CR--VTSLCYSEDGQEILVSYSSDYIYLFDPK-DDTARELK 291



 Score =  102 bits (254), Expect = 2e-21
 Identities = 51/106 (48%), Positives = 74/106 (69%), Gaps = 2/106 (1%)
 Frame = +3

Query: 1611 YKGHRNNAT-VKGVNFYGPKSEFVVSGSDCGHIFLWEKSSCQIIQFMEGDKGGVVNCLEP 1787
            YKGHRN+ T +K  NF+G  + FV+SGSDCGHIF+W++ + + +  +E D   VVNCL+P
Sbjct: 712  YKGHRNSRTMIKEANFWG--ANFVMSGSDCGHIFIWDRHTAEHLMLLEADNH-VVNCLQP 768

Query: 1788 HPHLPVLATSGLDHDVKIWAPTAETSTELTGLKD-VIKKNKRERDE 1922
            HP  P+LA+SG+D+D+KIW+P  E+      L D VI +N+   +E
Sbjct: 769  HPFDPILASSGIDYDIKIWSPLEESRIFNRKLADEVITRNELMLEE 814


>ref|XP_544473.2| PREDICTED: similar to WD and tetratricopeptide repeats protein 1
            [Canis familiaris].
          Length = 679

 Score =  125 bits (315), Expect = 1e-28
 Identities = 82/270 (30%), Positives = 129/270 (47%), Gaps = 30/270 (11%)
 Frame = +3

Query: 864  FVQRFRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDLKVVVWDWVRRQPVLDFESGHKSN 1043
            F++R  L+  L+GH+GCVN L +N++G  LASGSDD   +VWD +  + +L   +GH +N
Sbjct: 33   FIRRLGLEAELQGHSGCVNCLEWNEKGDLLASGSDDQHTIVWDPLHHKKLLSMHTGHTAN 92

Query: 1044 VFQAKFLPNSGDSTLAMCARDGQVRVAELSATQCCKNTKRVAQHKGASHKLALEPDSPCT 1223
            +F  KFLP++GD  L   A D +V V +L+  +          H     ++A  P  P T
Sbjct: 93   IFSVKFLPHAGDRILITGAADSKVHVHDLTVKE---TIHMFGDHTNRVKRIATAPMWPNT 149

Query: 1224 FLSAGEDAVVFTIDLRQDRPASXXXXXXXXXXXXGLYT--IYVNPANTHQFAVGGRDQFV 1397
            F SA ED ++   DLR++   S             +    + VNP + +  AVG    FV
Sbjct: 150  FWSAAEDGLIRQYDLRENSKHSEVLIDLTEYCGQLVEAKCLTVNPQDNNCLAVGASGPFV 209

Query: 1398 RIYDQRKIDENEN---------------------NGVLKKFCPHHL------VNSESKAN 1496
            R+YD R I  +                       +G  + +   HL       N+  +  
Sbjct: 210  RLYDIRMIHNHRKSMKQSPSAGVHTFCDRQKPLPDGAAQYYVAGHLPVKLPDYNNRLRVL 269

Query: 1497 I-TCLVYSHDGTELLASYNDEDIYLFNSSH 1583
            + T + +S +GTELL +   E +YLF+ ++
Sbjct: 270  VATYVTFSPNGTELLVNMGGEQVYLFDLTY 299



 Score = 93.2 bits (230), Expect = 1e-18
 Identities = 51/136 (37%), Positives = 82/136 (60%), Gaps = 6/136 (4%)
 Frame = +3

Query: 1542 SYNDEDIYLFNSSHSDGAQYIKRYKGHRNNAT-VKGVNFYGPKSEFVVSGSDCGHIFLWE 1718
            S +++++ L   S+     Y  RY GH N  T +K  NF+G  ++++VSGSD G  F+WE
Sbjct: 513  SISEDEMVLRERSYD----YQFRYCGHCNTTTDIKEANFFGSNAQYIVSGSDDGSFFIWE 568

Query: 1719 KSSCQIIQFMEGDKGGVVNCLEPHPHLPVLATSGLDHDVKIWAPTAETSTELTG-----L 1883
            K +  +++ ++GD+  +VNCL+PHP    LATSG+D  V++W P  E S +LTG     +
Sbjct: 569  KETTNLVRVLQGDE-SIVNCLQPHPSYCFLATSGIDPVVRLWNPRPE-SEDLTGRVVEDM 626

Query: 1884 KDVIKKNKRERDEDSL 1931
            +   + N+R  + D L
Sbjct: 627  EGASQANQRRMNADPL 642


>ref|XP_850117.1| PREDICTED: similar to WD repeat domain 5 [Canis familiaris].
          Length = 334

 Score = 68.6 bits (166), Expect = 3e-11
 Identities = 75/329 (22%), Positives = 141/329 (42%), Gaps = 6/329 (1%)
 Frame = +3

Query: 876  FRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDLKVVVWDWVRRQPVLDFE---SGHKSNV 1046
            + L+  L GHT  V+++ F+  G WLAS S D  + +W     +    FE   SGHK  +
Sbjct: 35   YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK----FEKTISGHKLGI 90

Query: 1047 FQAKFLPNSGDSTLAMCARDGQ-VRVAELSATQCCKNTKRVAQHKGASHKLALEPDSPCT 1223
                +   S DS L + A D + +++ ++S+ +C K  K    H          P S   
Sbjct: 91   SDVAW---SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKG---HSNYVFCCNFNPQSNL- 143

Query: 1224 FLSAGEDAVVFTIDLRQDRPASXXXXXXXXXXXXGLYTIYVNPANTHQFAVGGRDQFVRI 1403
             +S   D  V   D++  +                    + +P +   F   G       
Sbjct: 144  IVSGSFDESVRIWDVKTGKCLKTLPA-------------HSDPVSAVHFNRDGSLIVSSS 190

Query: 1404 YDQRKIDENENNGVLKKFCPHHLVNSESKANITCLVYSHDGTELLASYNDEDIYLFNSSH 1583
            YD   +     N   +      L+  +    ++ + +S +G  +LA+  D  + L++ S 
Sbjct: 191  YDG--LCGKTGNAASRCM---KLILDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 245

Query: 1584 SDGAQYIKRYKGHRNNATVKGVNFYGPKSEFVVSGSDCGHIFLWEKSSCQIIQFMEGDKG 1763
                + +K Y GH+N       NF     +++VSGS+   +++W   + +I+Q ++G   
Sbjct: 246  G---KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTD 302

Query: 1764 GVVNCLEPHPHLPVLATSGLDHD--VKIW 1844
             V++    HP   ++A++ L++D  +K+W
Sbjct: 303  VVIS-TACHPTENIIASAALENDKTIKLW 330


>ref|XP_547871.2| PREDICTED: similar to WD-repeat protein 22 (Breakpoint cluster region
            protein 2) (BCRP2) isoform 1 [Canis familiaris].
          Length = 865

 Score = 67.0 bits (162), Expect = 7e-11
 Identities = 65/289 (22%), Positives = 132/289 (45%), Gaps = 10/289 (3%)
 Frame = +3

Query: 1014 LDFESGHKSNVFQAKFLPNSGDSTLAMCARDGQVRVAELSATQCCKNTKRVAQHKGASHK 1193
            +  +  H SN+F   F  NSG++ +     D QV + ++ +++    T  V  H+ A + 
Sbjct: 12   IQLKGEHHSNIFCLAF--NSGNTKVFSGGNDEQVILHDVESSE----TLDVFAHEDAVYG 65

Query: 1194 LALEPDSPCTFLSAGEDAVVFTIDLRQDRPASXXXXXXXXXXXXGLYTIYVNPANTHQFA 1373
            L++ P +   F S+ +D  V   D+R+   +               +++  NP      A
Sbjct: 66   LSVSPVNDNIFASSSDDGRVLIWDIRE---SPHGEPFCLANYPSAFHSVMFNPVEPRLLA 122

Query: 1374 VGGRDQFVRIYDQRKIDENENNGVLKKFCPHHLVNSESKANITCLVYSHDGTELLASYND 1553
                 + V ++D RK   +     L ++  +  + S          ++ +GT+LLA    
Sbjct: 123  TANSKEGVGLWDIRKPQSS-----LLRYGGNLSLQSAMSVR-----FNSNGTQLLALRRR 172

Query: 1554 EDIYLFNSSHSDGAQYIKRYKGHRNNATVKGVNFYGPKSEFVVSGSDCGHIFLW----EK 1721
                L++  HS    +    +G+ N+ T+K   F G + ++++SGSD  ++++W    + 
Sbjct: 173  LPPVLYDI-HSRLPVFQFDNQGYFNSCTMKSCCFAGDRDQYILSGSDDFNLYMWRIPADP 231

Query: 1722 SSCQIIQFMEGD----KG--GVVNCLEPHPHLPVLATSGLDHDVKIWAP 1850
             +  I + + G     KG   +VN +  +PH  ++ +SG++  +KIW+P
Sbjct: 232  EAGGIGRVVNGAFMVLKGHRSIVNQVRFNPHTYMICSSGVEKIIKIWSP 280


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 89,406,864
Number of extensions: 2524035
Number of successful extensions: 11206
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 11047
Number of HSP's successfully gapped: 18
Length of query: 755
Length of database: 18,874,504
Length adjustment: 110
Effective length of query: 645
Effective length of database: 15,207,544
Effective search space: 9808865880
Effective search space used: 9808865880
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007192
         (2267 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_056541.2| DDB1- and CUL4-associated factor 8 [Homo sapien...  1038   0.0  
Alignment   gi|NP_001130005.1| DDB1- and CUL4-associated factor 8-like prot...   741   0.0  
Alignment   gi|NP_001017930.1| DDB1- and CUL4-associated factor 8-like prot...   702   0.0  
Alignment   gi|NP_001185885.1| DDB1- and CUL4-associated factor 6 isoform c...   142   1e-33
Alignment   gi|NP_001017977.1| DDB1- and CUL4-associated factor 6 isoform b...   142   1e-33
Alignment   gi|NP_060912.2| DDB1- and CUL4-associated factor 6 isoform a [H...   142   1e-33
Alignment   gi|NP_055838.2| WD and tetratricopeptide repeats protein 1 [Hom...   126   1e-28
Alignment   gi|NP_001185886.1| DDB1- and CUL4-associated factor 6 isoform d...   105   2e-22
Alignment   gi|NP_003852.1| DDB1- and CUL4-associated factor 5 [Homo sapien...    97   5e-20
Alignment   gi|NP_438172.1| WD repeat-containing protein 5 [Homo sapiens].        70   1e-11

>ref|NP_056541.2| DDB1- and CUL4-associated factor 8 [Homo sapiens].
          Length = 597

 Score = 1038 bits (2685), Expect = 0.0
 Identities = 519/597 (86%), Positives = 523/597 (87%), Gaps = 1/597 (0%)
 Frame = +3

Query: 333  MSSKGSSTDGKTDLANGSLSSSPEEMSGAEEGRETSSGIEVEASDLSLSLTGDDGGPNRT 512
            MSSKGSSTDG+TDLANGSLSSSPEEMSGAEEGRETSSGIEVEASDLSLSLTGDDGGPNRT
Sbjct: 1    MSSKGSSTDGRTDLANGSLSSSPEEMSGAEEGRETSSGIEVEASDLSLSLTGDDGGPNRT 60

Query: 513  STESRGTDTESSGEDKDSDSMEDTGHYSINDENQVHDPSXXXXXXXXXXXXXXXXXXXXX 692
            STESRGTDTESSGEDKDSDSMEDTGHYSINDEN+VHD S                     
Sbjct: 61   STESRGTDTESSGEDKDSDSMEDTGHYSINDENRVHDRSEEEEEEEEEEEEEQPRRRVQR 120

Query: 693  X-ANRDQDSSDDERALEDWVASETSALPRPRWQALPALRERELGSSARFVYEACGARVFV 869
              ANRDQDSSDDERALEDWV+SETSALPRPRWQALPALRERELGSSARFVYEACGARVFV
Sbjct: 121  KRANRDQDSSDDERALEDWVSSETSALPRPRWQALPALRERELGSSARFVYEACGARVFV 180

Query: 870  QRFRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDLKVVVWDWVRRQPVLDFESGHKSNVF 1049
            QRFRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDLKVVVWDWVRRQPVLDFESGHKSNVF
Sbjct: 181  QRFRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDLKVVVWDWVRRQPVLDFESGHKSNVF 240

Query: 1050 QAKFLPNSGDSTLAMCARDGQVRVAELSATQCCKNTKRVAQHKGASHKLALEPDSPCTFL 1229
            QAKFLPNSGDSTLAMCARDGQVRVAELSATQCCKNTKRVAQHKGASHKLALEPDSPCTFL
Sbjct: 241  QAKFLPNSGDSTLAMCARDGQVRVAELSATQCCKNTKRVAQHKGASHKLALEPDSPCTFL 300

Query: 1230 SAGEDAVVFTIDLRQDRPASXXXXXXXXXXXXGLYTIYVNPANTHQFAVGGRDQFVRIYD 1409
            SAGEDAVVFTIDLRQDRPAS            GLYTIYVNPANTHQFAVGGRDQFVRIYD
Sbjct: 301  SAGEDAVVFTIDLRQDRPASKLVVTKEKEKKVGLYTIYVNPANTHQFAVGGRDQFVRIYD 360

Query: 1410 QRKIDENENNGVLKKFCPHHLVNSESKANITCLVYSHDGTELLASYNDEDIYLFNSSHSD 1589
            QRKIDENENNGVLKKFCPHHLVNSESKANITCLVYSHDGTELLASYNDEDIYLFNSSHSD
Sbjct: 361  QRKIDENENNGVLKKFCPHHLVNSESKANITCLVYSHDGTELLASYNDEDIYLFNSSHSD 420

Query: 1590 GAQYIKRYKGHRNNATVKGVNFYGPKSEFVVSGSDCGHIFLWEKSSCQIIQFMEGDKGGV 1769
            GAQY+KRYKGHRNNATVKGVNFYGPKSEFVVSGSDCGHIFLWEKSSCQIIQFMEGDKGGV
Sbjct: 421  GAQYVKRYKGHRNNATVKGVNFYGPKSEFVVSGSDCGHIFLWEKSSCQIIQFMEGDKGGV 480

Query: 1770 VNCLEPHPHLPVLATSGLDHDVKIWAPTAETSTELTGLKDVIKKNKRERDEDSLHHTDLF 1949
            VNCLEPHPHLPVLATSGLDHDVKIWAPTAE STELTGLKDVIKKNKRERDEDSLH TDLF
Sbjct: 481  VNCLEPHPHLPVLATSGLDHDVKIWAPTAEASTELTGLKDVIKKNKRERDEDSLHQTDLF 540

Query: 1950 DSHMLWFLMXXXXXXXXXXXXXEPGVGXXXXXXXXXXXXXXXXXXXXXXXRVQCMPS 2120
            DSHMLWFLM             EPGVG                       RVQCMPS
Sbjct: 541  DSHMLWFLMHHLRQRRHHRRWREPGVGATDADSDESPSSSDTSDEEEGPDRVQCMPS 597


>ref|NP_001130005.1| DDB1- and CUL4-associated factor 8-like protein 2 [Homo sapiens].
          Length = 631

 Score =  741 bits (1912), Expect = 0.0
 Identities = 375/584 (64%), Positives = 430/584 (73%), Gaps = 36/584 (6%)
 Frame = +3

Query: 333  MSSKGSSTDGKTDLANGSLSSSPEEMSGAEEGRETSSGIEVEASDLSLSLTGD-----DG 497
            MS +  STDG  DL   SL SSPEE SGA    E SS I++  S+LS+++TGD     DG
Sbjct: 1    MSHQEGSTDGLPDLGTESLFSSPEEQSGAVAATEASSDIDIATSELSVTVTGDGSDSRDG 60

Query: 498  G-PNRTSTESRGTDTESSGEDKDSDSMEDTGHYSINDENQVHDP---------------- 626
            G PN  STE+R +D ES+ ED + +S+ED  H+ ++ E+  H P                
Sbjct: 61   GFPNDASTENRSSDQESASEDIELESLEDFEHFLMSGESLFHYPLVGEEETEREEEDEEI 120

Query: 627  --------------SXXXXXXXXXXXXXXXXXXXXXXANRDQDSSDDERALEDWVASETS 764
                                                  N +Q S ++++ALE+WV+SETS
Sbjct: 121  QEEGGEEEEEEEEEEEEEEEEEEEEEEQPRAGPQGSGGNHEQYSLEEDQALEEWVSSETS 180

Query: 765  ALPRPRWQALPALRERELGSSARFVYEACGARVFVQRFRLQHGLEGHTGCVNTLHFNQRG 944
            ALPRPRWQ + AL +R+LGS  RFVYEACGAR FVQRFRLQ+ L  H GCVNT+HFNQRG
Sbjct: 181  ALPRPRWQVVTALHQRQLGSRPRFVYEACGARAFVQRFRLQYRLADHVGCVNTVHFNQRG 240

Query: 945  TWLASGSDDLKVVVWDWVRRQPVLDFESGHKSNVFQAKFLPNSGDSTLAMCARDGQVRVA 1124
            T LAS  DDLKV+VWDWVR++PVL+FESGH +NVFQAKFLPN GDSTLAMCARDGQVRVA
Sbjct: 241  TRLASSGDDLKVIVWDWVRQRPVLNFESGHTNNVFQAKFLPNCGDSTLAMCARDGQVRVA 300

Query: 1125 ELSATQCCKNTKRVAQHKGASHKLALEPDSPCTFLSAGEDAVVFTIDLRQDRPASXXXXX 1304
            EL       NTK VAQH+G +HKLALEPDSP  FL++GEDAVVFTIDLRQDRPAS     
Sbjct: 301  ELINASYFNNTKCVAQHRGPAHKLALEPDSPYKFLTSGEDAVVFTIDLRQDRPASKVVVT 360

Query: 1305 XXXXXXXGLYTIYVNPANTHQFAVGGRDQFVRIYDQRKIDENENNGVLKKFCPHHLVNSE 1484
                   GLYTI VNPANT+QFAVGG+DQFVRIYDQRKID+ ENNGVLKKF PHHLVN +
Sbjct: 361  RENDKKVGLYTITVNPANTYQFAVGGQDQFVRIYDQRKIDKKENNGVLKKFTPHHLVNCD 420

Query: 1485 SKANITCLVYSHDGTELLASYNDEDIYLFNSSHSDGAQYIKRYKGHRNNATVKGVNFYGP 1664
               NITC+VYSHDGTELLASYND+DIYLFNSSHSDGAQY KR+KGHRNN TVKGVNFYGP
Sbjct: 421  FPTNITCVVYSHDGTELLASYNDDDIYLFNSSHSDGAQYSKRFKGHRNNTTVKGVNFYGP 480

Query: 1665 KSEFVVSGSDCGHIFLWEKSSCQIIQFMEGDKGGVVNCLEPHPHLPVLATSGLDHDVKIW 1844
            +SEFVVSGSDCGHIF WEKSSCQIIQF++G + G +NCLEPHP+LPVLA SGLDHDVKIW
Sbjct: 481  RSEFVVSGSDCGHIFFWEKSSCQIIQFLKGSREGTINCLEPHPYLPVLACSGLDHDVKIW 540

Query: 1845 APTAETSTELTGLKDVIKKNKRERDEDSLHHTDLFDSHMLWFLM 1976
             PTA+ +TELTGLK VIKKNK ERDEDSLHH  LFD +MLWFL+
Sbjct: 541  TPTAKAATELTGLKKVIKKNKWERDEDSLHHGSLFDQYMLWFLL 584


>ref|NP_001017930.1| DDB1- and CUL4-associated factor 8-like protein 1 [Homo sapiens].
          Length = 600

 Score =  702 bits (1812), Expect = 0.0
 Identities = 365/600 (60%), Positives = 423/600 (70%), Gaps = 4/600 (0%)
 Frame = +3

Query: 333  MSSKGSSTDGKTDLANGSLSSSPEEMSGAEEGRETSSGIEVEASDLSLSLTGD--DGG-P 503
            MS +  ST G  DL   SL SSPEE SG       SS IE+ A++ S    GD  DGG  
Sbjct: 1    MSHQEGSTGGLPDLVTESLFSSPEEQSGVAAVTAASSDIEMAATEPSTGDGGDTRDGGFL 60

Query: 504  NRTSTESRGTDTESSGEDKDSDSM-EDTGHYSINDENQVHDPSXXXXXXXXXXXXXXXXX 680
            N  STE++ TD+ESS ED + +SM E    Y +  E    +                   
Sbjct: 61   NDASTENQNTDSESSSEDVELESMGEGLFGYPLVGEETEREEEEEEMEEEGEEEEQPRMC 120

Query: 681  XXXXXANRDQDSSDDERALEDWVASETSALPRPRWQALPALRERELGSSARFVYEACGAR 860
                  N DQ   D+++ALE+W++SETSALPR RWQ L ALR+R+LGSSARFVYEACGAR
Sbjct: 121  PRCGGTNHDQCLLDEDQALEEWISSETSALPRSRWQVLTALRQRQLGSSARFVYEACGAR 180

Query: 861  VFVQRFRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDLKVVVWDWVRRQPVLDFESGHKS 1040
             FVQRFRLQ+ L  H G V+T+HFNQRGT LAS  DDL+V+VWDWVR++PVL+FESGH  
Sbjct: 181  TFVQRFRLQYLLGSHAGSVSTIHFNQRGTRLASSGDDLRVIVWDWVRQKPVLNFESGHDI 240

Query: 1041 NVFQAKFLPNSGDSTLAMCARDGQVRVAELSATQCCKNTKRVAQHKGASHKLALEPDSPC 1220
            NV QAKF PN GDSTLAMC  DGQVRVAEL     C+NTKRVA+H+G +H+LALEPDSP 
Sbjct: 241  NVIQAKFFPNCGDSTLAMCGHDGQVRVAELINASYCENTKRVAKHRGPAHELALEPDSPY 300

Query: 1221 TFLSAGEDAVVFTIDLRQDRPASXXXXXXXXXXXXGLYTIYVNPANTHQFAVGGRDQFVR 1400
             FL++GEDAVVFTIDLRQDRPAS            GLYTI +NPAN +QFAVGG DQFVR
Sbjct: 301  KFLTSGEDAVVFTIDLRQDRPASKVVVTRENDKKVGLYTISMNPANIYQFAVGGHDQFVR 360

Query: 1401 IYDQRKIDENENNGVLKKFCPHHLVNSESKANITCLVYSHDGTELLASYNDEDIYLFNSS 1580
            IYDQR+ID+ ENNGVLKKF PHHLV  +   NITC+VYSHDGTELLASYNDEDIYLFNSS
Sbjct: 361  IYDQRRIDKKENNGVLKKFTPHHLVYCDFPTNITCVVYSHDGTELLASYNDEDIYLFNSS 420

Query: 1581 HSDGAQYIKRYKGHRNNATVKGVNFYGPKSEFVVSGSDCGHIFLWEKSSCQIIQFMEGDK 1760
             SDGAQY+KRYKGHRNN T+K VNFYGP+SEFVVSGSDCGH+F WEKSS QIIQFMEGD+
Sbjct: 421  LSDGAQYVKRYKGHRNNDTIKCVNFYGPRSEFVVSGSDCGHVFFWEKSSSQIIQFMEGDR 480

Query: 1761 GGVVNCLEPHPHLPVLATSGLDHDVKIWAPTAETSTELTGLKDVIKKNKRERDEDSLHHT 1940
            G +VNCLEPHP+LPVLATSGLD  V+IW PTA+T+TELTGLKDVIKKNK+ERDED+L++T
Sbjct: 481  GDIVNCLEPHPYLPVLATSGLDQHVRIWTPTAKTATELTGLKDVIKKNKQERDEDNLNYT 540

Query: 1941 DLFDSHMLWFLMXXXXXXXXXXXXXEPGVGXXXXXXXXXXXXXXXXXXXXXXXRVQCMPS 2120
            D FD+ ML F +             + G                         RVQC+PS
Sbjct: 541  DSFDNRMLRFFVRHLLQRAHQPGWRDHGAEFPDEEELDESSSTSDTSEEEGQDRVQCIPS 600


>ref|NP_001185885.1| DDB1- and CUL4-associated factor 6 isoform c [Homo sapiens].
          Length = 951

 Score =  142 bits (359), Expect = 1e-33
 Identities = 89/281 (31%), Positives = 137/281 (48%), Gaps = 12/281 (4%)
 Frame = +3

Query: 801  LRERELG--SSARFVYEACGARVFVQRFRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDL 974
            +R+R LG    +R      G R F+QR +L+  L  H GCVNT+ +N  G ++ SGSDD 
Sbjct: 14   VRKRSLGLEDPSRLRSRYLGRREFIQRLKLEATLNVHDGCVNTICWNDTGEYILSGSDDT 73

Query: 975  KVVVWDWVRRQPVLDFESGHKSNVFQAKFLPNSGDSTLAMCARDGQVRVAELSATQCCKN 1154
            K+V+ +   R+ +    SGH++N+F AKFLP + D  +  C+ DG +    +        
Sbjct: 74   KLVISNPYSRKVLTTIRSGHRANIFSAKFLPCTNDKQIVSCSGDGVIFYTNVEQDAETNR 133

Query: 1155 TKRVAQHKGASHKLALEPDSPCTFLSAGEDAVV--FTIDLRQDRPASXXXXXXXXXXXXG 1328
              +   H G ++++   P+ P TFLS GED  V  F   ++                   
Sbjct: 134  QCQFTCHYGTTYEIMTVPNDPYTFLSCGEDGTVRWFDTRIKTSCTKEDCKDDILINCRRA 193

Query: 1329 LYTIYVNPANTHQFAVGGRDQFVRIYDQRKIDENE--------NNGVLKKFCPHHLVNSE 1484
              ++ + P   +  AVG  D  VRIYD+R +              G++ +F P HL N  
Sbjct: 194  ATSVAICPPIPYYLAVGCSDSSVRIYDRRMLGTRATGNYAGRGTTGMVARFIPSHLNNKS 253

Query: 1485 SKANITCLVYSHDGTELLASYNDEDIYLFNSSHSDGAQYIK 1607
             +  +T L YS DG E+L SY+ + IYLF+    D A+ +K
Sbjct: 254  CR--VTSLCYSEDGQEILVSYSSDYIYLFDPK-DDTARELK 291



 Score =  102 bits (254), Expect = 2e-21
 Identities = 51/106 (48%), Positives = 74/106 (69%), Gaps = 2/106 (1%)
 Frame = +3

Query: 1611 YKGHRNNAT-VKGVNFYGPKSEFVVSGSDCGHIFLWEKSSCQIIQFMEGDKGGVVNCLEP 1787
            YKGHRN+ T +K  NF+G  + FV+SGSDCGHIF+W++ + + +  +E D   VVNCL+P
Sbjct: 804  YKGHRNSRTMIKEANFWG--ANFVMSGSDCGHIFIWDRHTAEHLMLLEADNH-VVNCLQP 860

Query: 1788 HPHLPVLATSGLDHDVKIWAPTAETSTELTGLKD-VIKKNKRERDE 1922
            HP  P+LA+SG+D+D+KIW+P  E+      L D VI +N+   +E
Sbjct: 861  HPFDPILASSGIDYDIKIWSPLEESRIFNRKLADEVITRNELMLEE 906


>ref|NP_001017977.1| DDB1- and CUL4-associated factor 6 isoform b [Homo sapiens].
          Length = 860

 Score =  142 bits (359), Expect = 1e-33
 Identities = 89/281 (31%), Positives = 137/281 (48%), Gaps = 12/281 (4%)
 Frame = +3

Query: 801  LRERELG--SSARFVYEACGARVFVQRFRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDL 974
            +R+R LG    +R      G R F+QR +L+  L  H GCVNT+ +N  G ++ SGSDD 
Sbjct: 14   VRKRSLGLEDPSRLRSRYLGRREFIQRLKLEATLNVHDGCVNTICWNDTGEYILSGSDDT 73

Query: 975  KVVVWDWVRRQPVLDFESGHKSNVFQAKFLPNSGDSTLAMCARDGQVRVAELSATQCCKN 1154
            K+V+ +   R+ +    SGH++N+F AKFLP + D  +  C+ DG +    +        
Sbjct: 74   KLVISNPYSRKVLTTIRSGHRANIFSAKFLPCTNDKQIVSCSGDGVIFYTNVEQDAETNR 133

Query: 1155 TKRVAQHKGASHKLALEPDSPCTFLSAGEDAVV--FTIDLRQDRPASXXXXXXXXXXXXG 1328
              +   H G ++++   P+ P TFLS GED  V  F   ++                   
Sbjct: 134  QCQFTCHYGTTYEIMTVPNDPYTFLSCGEDGTVRWFDTRIKTSCTKEDCKDDILINCRRA 193

Query: 1329 LYTIYVNPANTHQFAVGGRDQFVRIYDQRKIDENE--------NNGVLKKFCPHHLVNSE 1484
              ++ + P   +  AVG  D  VRIYD+R +              G++ +F P HL N  
Sbjct: 194  ATSVAICPPIPYYLAVGCSDSSVRIYDRRMLGTRATGNYAGRGTTGMVARFIPSHLNNKS 253

Query: 1485 SKANITCLVYSHDGTELLASYNDEDIYLFNSSHSDGAQYIK 1607
             +  +T L YS DG E+L SY+ + IYLF+    D A+ +K
Sbjct: 254  CR--VTSLCYSEDGQEILVSYSSDYIYLFDPK-DDTARELK 291



 Score =  102 bits (254), Expect = 2e-21
 Identities = 51/106 (48%), Positives = 74/106 (69%), Gaps = 2/106 (1%)
 Frame = +3

Query: 1611 YKGHRNNAT-VKGVNFYGPKSEFVVSGSDCGHIFLWEKSSCQIIQFMEGDKGGVVNCLEP 1787
            YKGHRN+ T +K  NF+G  + FV+SGSDCGHIF+W++ + + +  +E D   VVNCL+P
Sbjct: 713  YKGHRNSRTMIKEANFWG--ANFVMSGSDCGHIFIWDRHTAEHLMLLEADNH-VVNCLQP 769

Query: 1788 HPHLPVLATSGLDHDVKIWAPTAETSTELTGLKD-VIKKNKRERDE 1922
            HP  P+LA+SG+D+D+KIW+P  E+      L D VI +N+   +E
Sbjct: 770  HPFDPILASSGIDYDIKIWSPLEESRIFNRKLADEVITRNELMLEE 815


>ref|NP_060912.2| DDB1- and CUL4-associated factor 6 isoform a [Homo sapiens].
          Length = 880

 Score =  142 bits (359), Expect = 1e-33
 Identities = 89/281 (31%), Positives = 137/281 (48%), Gaps = 12/281 (4%)
 Frame = +3

Query: 801  LRERELG--SSARFVYEACGARVFVQRFRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDL 974
            +R+R LG    +R      G R F+QR +L+  L  H GCVNT+ +N  G ++ SGSDD 
Sbjct: 14   VRKRSLGLEDPSRLRSRYLGRREFIQRLKLEATLNVHDGCVNTICWNDTGEYILSGSDDT 73

Query: 975  KVVVWDWVRRQPVLDFESGHKSNVFQAKFLPNSGDSTLAMCARDGQVRVAELSATQCCKN 1154
            K+V+ +   R+ +    SGH++N+F AKFLP + D  +  C+ DG +    +        
Sbjct: 74   KLVISNPYSRKVLTTIRSGHRANIFSAKFLPCTNDKQIVSCSGDGVIFYTNVEQDAETNR 133

Query: 1155 TKRVAQHKGASHKLALEPDSPCTFLSAGEDAVV--FTIDLRQDRPASXXXXXXXXXXXXG 1328
              +   H G ++++   P+ P TFLS GED  V  F   ++                   
Sbjct: 134  QCQFTCHYGTTYEIMTVPNDPYTFLSCGEDGTVRWFDTRIKTSCTKEDCKDDILINCRRA 193

Query: 1329 LYTIYVNPANTHQFAVGGRDQFVRIYDQRKIDENE--------NNGVLKKFCPHHLVNSE 1484
              ++ + P   +  AVG  D  VRIYD+R +              G++ +F P HL N  
Sbjct: 194  ATSVAICPPIPYYLAVGCSDSSVRIYDRRMLGTRATGNYAGRGTTGMVARFIPSHLNNKS 253

Query: 1485 SKANITCLVYSHDGTELLASYNDEDIYLFNSSHSDGAQYIK 1607
             +  +T L YS DG E+L SY+ + IYLF+    D A+ +K
Sbjct: 254  CR--VTSLCYSEDGQEILVSYSSDYIYLFDPK-DDTARELK 291



 Score =  102 bits (254), Expect = 2e-21
 Identities = 51/106 (48%), Positives = 74/106 (69%), Gaps = 2/106 (1%)
 Frame = +3

Query: 1611 YKGHRNNAT-VKGVNFYGPKSEFVVSGSDCGHIFLWEKSSCQIIQFMEGDKGGVVNCLEP 1787
            YKGHRN+ T +K  NF+G  + FV+SGSDCGHIF+W++ + + +  +E D   VVNCL+P
Sbjct: 733  YKGHRNSRTMIKEANFWG--ANFVMSGSDCGHIFIWDRHTAEHLMLLEADNH-VVNCLQP 789

Query: 1788 HPHLPVLATSGLDHDVKIWAPTAETSTELTGLKD-VIKKNKRERDE 1922
            HP  P+LA+SG+D+D+KIW+P  E+      L D VI +N+   +E
Sbjct: 790  HPFDPILASSGIDYDIKIWSPLEESRIFNRKLADEVITRNELMLEE 835


>ref|NP_055838.2| WD and tetratricopeptide repeats protein 1 [Homo sapiens].
          Length = 676

 Score =  126 bits (316), Expect = 1e-28
 Identities = 89/309 (28%), Positives = 138/309 (44%), Gaps = 44/309 (14%)
 Frame = +3

Query: 864  FVQRFRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDLKVVVWDWVRRQPVLDFESGHKSN 1043
            F++R  L+  L+GH+GCVN L +N++G  LASGSDD   +VWD +  + +L   +GH +N
Sbjct: 33   FIRRLGLEAELQGHSGCVNCLEWNEKGDLLASGSDDQHTIVWDPLHHKKLLSMHTGHTAN 92

Query: 1044 VFQAKFLPNSGDSTLAMCARDGQVRVAELSATQCCKNTKRVAQHKGASHKLALEPDSPCT 1223
            +F  KFLP++GD  L   A D +V V +L+  +          H     ++A  P  P T
Sbjct: 93   IFSVKFLPHAGDRILITGAADSKVHVHDLTVKE---TIHMFGDHTNRVKRIATAPMWPNT 149

Query: 1224 FLSAGEDAVVFTIDLRQDRPASXXXXXXXXXXXXGLYT--IYVNPANTHQFAVGGRDQFV 1397
            F SA ED ++   DLR++   S             +    + VNP + +  AVG    FV
Sbjct: 150  FWSAAEDGLIRQYDLRENSKHSEVLIDLTEYCGQLVEAKCLTVNPQDNNCLAVGASGPFV 209

Query: 1398 RIYDQRKIDENEN---------------------NGVLKKFCPHHL------VNSESKAN 1496
            R+YD R I  +                       +G  + +   HL       N+  +  
Sbjct: 210  RLYDIRMIHNHRKSMKQSPSAGVHTFCDRQKPLPDGAAQYYVAGHLPVKLPDYNNRLRVL 269

Query: 1497 I-TCLVYSHDGTELLASYNDEDIYLFN--------------SSHSDGAQYIKRYKGHRNN 1631
            + T + +S +GTELL +   E +YLF+                HS G Q  K      +N
Sbjct: 270  VATYVTFSPNGTELLVNMGGEQVYLFDLTYKQRPYTFLLPRKCHSSGVQNGKMSTNGVSN 329

Query: 1632 ATVKGVNFY 1658
                G++ +
Sbjct: 330  GVSNGLHLH 338



 Score = 93.2 bits (230), Expect = 9e-19
 Identities = 51/136 (37%), Positives = 82/136 (60%), Gaps = 6/136 (4%)
 Frame = +3

Query: 1542 SYNDEDIYLFNSSHSDGAQYIKRYKGHRNNAT-VKGVNFYGPKSEFVVSGSDCGHIFLWE 1718
            S +++++ L   S+     Y  RY GH N  T +K  NF+G  ++++VSGSD G  F+WE
Sbjct: 510  SISEDEMVLRERSYD----YQFRYCGHCNTTTDIKEANFFGSNAQYIVSGSDDGSFFIWE 565

Query: 1719 KSSCQIIQFMEGDKGGVVNCLEPHPHLPVLATSGLDHDVKIWAPTAETSTELTG-----L 1883
            K +  +++ ++GD+  +VNCL+PHP    LATSG+D  V++W P  E S +LTG     +
Sbjct: 566  KETTNLVRVLQGDE-SIVNCLQPHPSYCFLATSGIDPVVRLWNPRPE-SEDLTGRVVEDM 623

Query: 1884 KDVIKKNKRERDEDSL 1931
            +   + N+R  + D L
Sbjct: 624  EGASQANQRRMNADPL 639


>ref|NP_001185886.1| DDB1- and CUL4-associated factor 6 isoform d [Homo sapiens].
          Length = 920

 Score =  105 bits (261), Expect = 2e-22
 Identities = 78/281 (27%), Positives = 117/281 (41%), Gaps = 12/281 (4%)
 Frame = +3

Query: 801  LRERELG--SSARFVYEACGARVFVQRFRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDL 974
            +R+R LG    +R      G R F+QR +L+  L  H GCV T                 
Sbjct: 14   VRKRSLGLEDPSRLRSRYLGRREFIQRLKLEATLNVHDGCVLTT---------------- 57

Query: 975  KVVVWDWVRRQPVLDFESGHKSNVFQAKFLPNSGDSTLAMCARDGQVRVAELSATQCCKN 1154
                             SGH++N+F AKFLP + D  +  C+ DG +    +        
Sbjct: 58   ---------------IRSGHRANIFSAKFLPCTNDKQIVSCSGDGVIFYTNVEQDAETNR 102

Query: 1155 TKRVAQHKGASHKLALEPDSPCTFLSAGEDAVV--FTIDLRQDRPASXXXXXXXXXXXXG 1328
              +   H G ++++   P+ P TFLS GED  V  F   ++                   
Sbjct: 103  QCQFTCHYGTTYEIMTVPNDPYTFLSCGEDGTVRWFDTRIKTSCTKEDCKDDILINCRRA 162

Query: 1329 LYTIYVNPANTHQFAVGGRDQFVRIYDQRKIDENE--------NNGVLKKFCPHHLVNSE 1484
              ++ + P   +  AVG  D  VRIYD+R +              G++ +F P HL N  
Sbjct: 163  ATSVAICPPIPYYLAVGCSDSSVRIYDRRMLGTRATGNYAGRGTTGMVARFIPSHLNNKS 222

Query: 1485 SKANITCLVYSHDGTELLASYNDEDIYLFNSSHSDGAQYIK 1607
             +  +T L YS DG E+L SY+ + IYLF+    D A+ +K
Sbjct: 223  CR--VTSLCYSEDGQEILVSYSSDYIYLFDPK-DDTARELK 260



 Score =  102 bits (254), Expect = 2e-21
 Identities = 51/106 (48%), Positives = 74/106 (69%), Gaps = 2/106 (1%)
 Frame = +3

Query: 1611 YKGHRNNAT-VKGVNFYGPKSEFVVSGSDCGHIFLWEKSSCQIIQFMEGDKGGVVNCLEP 1787
            YKGHRN+ T +K  NF+G  + FV+SGSDCGHIF+W++ + + +  +E D   VVNCL+P
Sbjct: 773  YKGHRNSRTMIKEANFWG--ANFVMSGSDCGHIFIWDRHTAEHLMLLEADNH-VVNCLQP 829

Query: 1788 HPHLPVLATSGLDHDVKIWAPTAETSTELTGLKD-VIKKNKRERDE 1922
            HP  P+LA+SG+D+D+KIW+P  E+      L D VI +N+   +E
Sbjct: 830  HPFDPILASSGIDYDIKIWSPLEESRIFNRKLADEVITRNELMLEE 875


>ref|NP_003852.1| DDB1- and CUL4-associated factor 5 [Homo sapiens].
          Length = 942

 Score = 97.4 bits (241), Expect = 5e-20
 Identities = 84/334 (25%), Positives = 156/334 (46%), Gaps = 15/334 (4%)
 Frame = +3

Query: 894  LEGHTGCVNTLHF-NQRGTWLASGSDDLKVVVWDWVR----RQPVLDFESGHKSNVFQAK 1058
            L GH GCVN + F N  G WL SG DD +V++W   +    R   +  +  H SN+F   
Sbjct: 49   LLGHFGCVNAIEFSNNGGQWLVSGGDDRRVLLWHMEQAIHSRVKPIQLKGEHHSNIFCLA 108

Query: 1059 FLPNSGDSTLAMCARDGQVRVAELSATQCCKNTKRVAQHKGASHKLALEPDSPCTFLSAG 1238
            F  NSG++ +     D QV + ++ +++    T  V  H+ A + L++ P +   F S+ 
Sbjct: 109  F--NSGNTKVFSGGNDEQVILHDVESSE----TLDVFAHEDAVYGLSVSPVNDNIFASSS 162

Query: 1239 EDAVVFTIDLRQDRPASXXXXXXXXXXXXGLYTIYVNPANTHQFAVGGRDQFVRIYDQRK 1418
            +D  V   D+R+   +               +++  NP      A     + V ++D RK
Sbjct: 163  DDGRVLIWDIRE---SPHGEPFCLANYPSAFHSVMFNPVEPRLLATANSKEGVGLWDIRK 219

Query: 1419 IDENENNGVLKKFCPHHLVNSESKANITCLVYSHDGTELLASYNDEDIYLFNSSHSDGAQ 1598
               +     L ++  +  + S          ++ +GT+LLA        L++  HS    
Sbjct: 220  PQSS-----LLRYGGNLSLQSAMSVR-----FNSNGTQLLALRRRLPPVLYDI-HSRLPV 268

Query: 1599 YIKRYKGHRNNATVKGVNFYGPKSEFVVSGSDCGHIFLW----EKSSCQIIQFMEGD--- 1757
            +    +G+ N+ T+K   F G + ++++SGSD  ++++W    +  +  I + + G    
Sbjct: 269  FQFDNQGYFNSCTMKSCCFAGDRDQYILSGSDDFNLYMWRIPADPEAGGIGRVVNGAFMV 328

Query: 1758 -KG--GVVNCLEPHPHLPVLATSGLDHDVKIWAP 1850
             KG   +VN +  +PH  ++ +SG++  +KIW+P
Sbjct: 329  LKGHRSIVNQVRFNPHTYMICSSGVEKIIKIWSP 362


>ref|NP_438172.1| WD repeat-containing protein 5 [Homo sapiens].
          Length = 334

 Score = 69.7 bits (169), Expect = 1e-11
 Identities = 76/333 (22%), Positives = 142/333 (42%), Gaps = 10/333 (3%)
 Frame = +3

Query: 876  FRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDLKVVVWDWVRRQPVLDFE---SGHKSNV 1046
            + L+  L GHT  V+++ F+  G WLAS S D  + +W     +    FE   SGHK  +
Sbjct: 35   YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK----FEKTISGHKLGI 90

Query: 1047 FQAKFLPNSGDSTLAMCARDGQ-VRVAELSATQCCKNTKRVAQHKGASHKLALEPDSPCT 1223
                +   S DS L + A D + +++ ++S+ +C K  K    H          P S   
Sbjct: 91   SDVAW---SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKG---HSNYVFCCNFNPQSNLI 144

Query: 1224 FLSAGEDAV----VFTIDLRQDRPASXXXXXXXXXXXXGLYTIYVNPANTHQFAVGGRDQ 1391
               + +++V    V T    +  PA             G   +               D 
Sbjct: 145  VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS-----------SSYDG 193

Query: 1392 FVRIYDQRKIDENENNGVLKKFCPHHLVNSESKANITCLVYSHDGTELLASYNDEDIYLF 1571
              RI+D                C   L++ ++   ++ + +S +G  +LA+  D  + L+
Sbjct: 194  LCRIWDTASGQ-----------CLKTLIDDDNPP-VSFVKFSPNGKYILAATLDNTLKLW 241

Query: 1572 NSSHSDGAQYIKRYKGHRNNATVKGVNFYGPKSEFVVSGSDCGHIFLWEKSSCQIIQFME 1751
            + S     + +K Y GH+N       NF     +++VSGS+   +++W   + +I+Q ++
Sbjct: 242  DYSKG---KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 298

Query: 1752 GDKGGVVNCLEPHPHLPVLATSGLDHD--VKIW 1844
            G    V++    HP   ++A++ L++D  +K+W
Sbjct: 299  GHTDVVIS-TACHPTENIIASAALENDKTIKLW 330


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 87,929,135
Number of extensions: 2494834
Number of successful extensions: 11125
Number of sequences better than 1.0e-05: 16
Number of HSP's gapped: 10962
Number of HSP's successfully gapped: 23
Length of query: 755
Length of database: 18,297,164
Length adjustment: 110
Effective length of query: 645
Effective length of database: 14,671,124
Effective search space: 9462874980
Effective search space used: 9462874980
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007192
         (2267 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_705783.1| DDB1- and CUL4-associated factor 8 [Mus musculu...  1016   0.0  
Alignment   gi|NP_032847.2| plasmacytoma expressed transcript 2 [Mus muscul...   624   e-178
Alignment   gi|NP_083035.1| DDB1- and CUL4-associated factor 6 [Mus musculu...   143   7e-34
Alignment   gi|NP_955010.1| WD and tetratricopeptide repeats protein 1 [Mus...   127   4e-29
Alignment   gi|NP_796241.3| DDB1- and CUL4-associated factor 5 [Mus musculu...    97   4e-20
Alignment   gi|NP_543124.1| WD repeat-containing protein 5 [Mus musculus].        70   9e-12
Alignment   gi|NP_081389.1| WD repeat-containing protein 5B [Mus musculus].       63   1e-09
Alignment   gi|NP_084172.1| WD repeat-containing protein 82 [Mus musculus].       62   1e-09
Alignment   gi|NP_079921.2| U5 small nuclear ribonucleoprotein 40 kDa prote...    50   1e-05

>ref|NP_705783.1| DDB1- and CUL4-associated factor 8 [Mus musculus].
          Length = 591

 Score = 1016 bits (2628), Expect = 0.0
 Identities = 506/595 (85%), Positives = 519/595 (87%)
 Frame = +3

Query: 336  SSKGSSTDGKTDLANGSLSSSPEEMSGAEEGRETSSGIEVEASDLSLSLTGDDGGPNRTS 515
            + + ++TDG+TDLANGSLSSSPEEMSGAEEGRETSSGIEVEASDLSLSLTGDDGGPNRTS
Sbjct: 3    NKRPNTTDGRTDLANGSLSSSPEEMSGAEEGRETSSGIEVEASDLSLSLTGDDGGPNRTS 62

Query: 516  TESRGTDTESSGEDKDSDSMEDTGHYSINDENQVHDPSXXXXXXXXXXXXXXXXXXXXXX 695
            TESRGTDTESSGE+KDSDSMEDTGHYSINDE++ H  S                      
Sbjct: 63   TESRGTDTESSGEEKDSDSMEDTGHYSINDESRGHGHSDEEDEEQPRHRGQRKR------ 116

Query: 696  ANRDQDSSDDERALEDWVASETSALPRPRWQALPALRERELGSSARFVYEACGARVFVQR 875
            A+RDQDSSDDERALEDWV+SET+ALPRPRWQALPALRERELGSSARFVYEACGARVFVQR
Sbjct: 117  ASRDQDSSDDERALEDWVSSETTALPRPRWQALPALRERELGSSARFVYEACGARVFVQR 176

Query: 876  FRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDLKVVVWDWVRRQPVLDFESGHKSNVFQA 1055
            FRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDLKVVVWDWVRRQPVLDFESGHKSNVFQA
Sbjct: 177  FRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDLKVVVWDWVRRQPVLDFESGHKSNVFQA 236

Query: 1056 KFLPNSGDSTLAMCARDGQVRVAELSATQCCKNTKRVAQHKGASHKLALEPDSPCTFLSA 1235
            KFLPNSGDSTLAMCARDGQVRVAELSATQCCKNTKRVAQHKGASHKLALEPDSPCTFLSA
Sbjct: 237  KFLPNSGDSTLAMCARDGQVRVAELSATQCCKNTKRVAQHKGASHKLALEPDSPCTFLSA 296

Query: 1236 GEDAVVFTIDLRQDRPASXXXXXXXXXXXXGLYTIYVNPANTHQFAVGGRDQFVRIYDQR 1415
            GEDAVVFTIDLRQDRPAS            GLYTIYVNPANTHQFAVGGRDQ+VRIYDQR
Sbjct: 297  GEDAVVFTIDLRQDRPASKLVVTKEKEKKVGLYTIYVNPANTHQFAVGGRDQYVRIYDQR 356

Query: 1416 KIDENENNGVLKKFCPHHLVNSESKANITCLVYSHDGTELLASYNDEDIYLFNSSHSDGA 1595
            KIDENENNGVLKKFCPHHLVNSESKANITCLVYSHDGTELLASYNDEDIYLFNSSHSDGA
Sbjct: 357  KIDENENNGVLKKFCPHHLVNSESKANITCLVYSHDGTELLASYNDEDIYLFNSSHSDGA 416

Query: 1596 QYIKRYKGHRNNATVKGVNFYGPKSEFVVSGSDCGHIFLWEKSSCQIIQFMEGDKGGVVN 1775
            QYIKRYKGHRNNATVKGVNFYGPKSEFVVSGSDCGHIFLWEKSSCQIIQFMEGDKGGVVN
Sbjct: 417  QYIKRYKGHRNNATVKGVNFYGPKSEFVVSGSDCGHIFLWEKSSCQIIQFMEGDKGGVVN 476

Query: 1776 CLEPHPHLPVLATSGLDHDVKIWAPTAETSTELTGLKDVIKKNKRERDEDSLHHTDLFDS 1955
            CLEPHPHLPVLATSGLDHDVKIWAPTAE STELTGLK+VIKKNKRERDEDSLHHTDLFDS
Sbjct: 477  CLEPHPHLPVLATSGLDHDVKIWAPTAEASTELTGLKEVIKKNKRERDEDSLHHTDLFDS 536

Query: 1956 HMLWFLMXXXXXXXXXXXXXEPGVGXXXXXXXXXXXXXXXXXXXXXXXRVQCMPS 2120
            HMLWFLM             EPGVG                       RVQCMPS
Sbjct: 537  HMLWFLMHHLRQRRHHRRWREPGVGATDADSDESPSSSDTSDEEEGPDRVQCMPS 591


>ref|NP_032847.2| plasmacytoma expressed transcript 2 [Mus musculus].
          Length = 747

 Score =  624 bits (1609), Expect = e-178
 Identities = 291/424 (68%), Positives = 353/424 (83%)
 Frame = +3

Query: 705  DQDSSDDERALEDWVASETSALPRPRWQALPALRERELGSSARFVYEACGARVFVQRFRL 884
            +Q   +D+  +++W+A ETS LPRPRW  L ALR+R+LGSS RFVYEACGAR+FVQRF L
Sbjct: 286  EQYDIEDDSLIDEWIALETSPLPRPRWNVLSALRDRQLGSSGRFVYEACGARLFVQRFSL 345

Query: 885  QHGLEGHTGCVNTLHFNQRGTWLASGSDDLKVVVWDWVRRQPVLDFESGHKSNVFQAKFL 1064
            +H  EGH+GCVNT+HFNQ GT LASGSDDLKV+VWDW++++ VL+F+SGHK+N+ QAKFL
Sbjct: 346  EHVFEGHSGCVNTVHFNQHGTLLASGSDDLKVIVWDWLKKRSVLNFDSGHKNNILQAKFL 405

Query: 1065 PNSGDSTLAMCARDGQVRVAELSATQCCKNTKRVAQHKGASHKLALEPDSPCTFLSAGED 1244
            PN  D+ LAMC RDGQVRVA+LSA      TKR+ +H GASH+L LEPDSP  FL++GED
Sbjct: 406  PNCNDAILAMCGRDGQVRVAQLSAVAGTHMTKRLVKHGGASHRLGLEPDSPFRFLTSGED 465

Query: 1245 AVVFTIDLRQDRPASXXXXXXXXXXXXGLYTIYVNPANTHQFAVGGRDQFVRIYDQRKID 1424
            AVVF IDLRQ  PAS            GLYT++VNPAN +QFAVGG+DQF+RIYDQRKID
Sbjct: 466  AVVFNIDLRQAHPASKLLVIKDGDKKVGLYTVFVNPANVYQFAVGGQDQFMRIYDQRKID 525

Query: 1425 ENENNGVLKKFCPHHLVNSESKANITCLVYSHDGTELLASYNDEDIYLFNSSHSDGAQYI 1604
            EN NNGVLKKFCPHHL++S+  A+IT L+YS+DGTE+LASYNDEDIY+FNSS SDGAQY 
Sbjct: 526  ENVNNGVLKKFCPHHLLSSDYPAHITSLMYSYDGTEILASYNDEDIYIFNSSDSDGAQYA 585

Query: 1605 KRYKGHRNNATVKGVNFYGPKSEFVVSGSDCGHIFLWEKSSCQIIQFMEGDKGGVVNCLE 1784
            KRYKGHRNN+TVKGV FYGP+SEFV+SGSDCGHIF+WEKSSCQI+QF+E D+GG +NC++
Sbjct: 586  KRYKGHRNNSTVKGVYFYGPRSEFVMSGSDCGHIFIWEKSSCQIVQFLEADEGGTINCID 645

Query: 1785 PHPHLPVLATSGLDHDVKIWAPTAETSTELTGLKDVIKKNKRERDEDSLHHTDLFDSHML 1964
             HP+LPVLA+SGLDH+VKIW+P AE S +L GLK+VIK NK +RD  +L HT LF++ ML
Sbjct: 646  SHPYLPVLASSGLDHEVKIWSPIAEPSKKLAGLKNVIKINKLKRDNFTLRHTSLFNNSML 705

Query: 1965 WFLM 1976
             FLM
Sbjct: 706  CFLM 709


>ref|NP_083035.1| DDB1- and CUL4-associated factor 6 [Mus musculus].
          Length = 876

 Score =  143 bits (360), Expect = 7e-34
 Identities = 89/281 (31%), Positives = 137/281 (48%), Gaps = 12/281 (4%)
 Frame = +3

Query: 801  LRERELG--SSARFVYEACGARVFVQRFRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDL 974
            +R+R LG    +R      G R F+QR +L+  L  H GCVNT+ +N  G ++ SGSDD 
Sbjct: 14   VRKRSLGLEDPSRLRSRYLGRREFIQRLKLEATLNVHDGCVNTICWNDTGEYILSGSDDT 73

Query: 975  KVVVWDWVRRQPVLDFESGHKSNVFQAKFLPNSGDSTLAMCARDGQVRVAELSATQCCKN 1154
            K+V+ +   R+ +    SGH++N+F AKFLP + D  +  C+ DG +    +        
Sbjct: 74   KLVISNPYSRKVLTTIRSGHRANIFSAKFLPCTDDKQIVSCSGDGVIFYTNIEQDAETNR 133

Query: 1155 TKRVAQHKGASHKLALEPDSPCTFLSAGEDAVV--FTIDLRQDRPASXXXXXXXXXXXXG 1328
              +   H G ++++   P+ P TFLS GED  V  F   ++                   
Sbjct: 134  QCQFTCHYGTTYEIMTVPNDPYTFLSCGEDGTVRWFDTRIKTSCTKEDCKDDILINCRRA 193

Query: 1329 LYTIYVNPANTHQFAVGGRDQFVRIYDQRKIDENE--------NNGVLKKFCPHHLVNSE 1484
              ++ + P   +  AVG  D  VRIYD+R +              G++ +F P HL N  
Sbjct: 194  ATSVAICPPVPYYLAVGCSDSSVRIYDRRMLGTRATGNYAGRGTTGMVARFIPSHLSNKS 253

Query: 1485 SKANITCLVYSHDGTELLASYNDEDIYLFNSSHSDGAQYIK 1607
             +  +T L YS DG E+L SY+ + IYLF+    D A+ +K
Sbjct: 254  CR--VTSLCYSEDGQEILVSYSSDYIYLFDPK-DDTARELK 291



 Score =  102 bits (254), Expect = 1e-21
 Identities = 51/106 (48%), Positives = 74/106 (69%), Gaps = 2/106 (1%)
 Frame = +3

Query: 1611 YKGHRNNAT-VKGVNFYGPKSEFVVSGSDCGHIFLWEKSSCQIIQFMEGDKGGVVNCLEP 1787
            YKGHRN+ T +K  NF+G  + FV+SGSDCGHIF+W++ + + +  +E D   VVNCL+P
Sbjct: 729  YKGHRNSRTMIKEANFWG--ANFVMSGSDCGHIFIWDRHTAEHLMLLEADNH-VVNCLQP 785

Query: 1788 HPHLPVLATSGLDHDVKIWAPTAETSTELTGLKD-VIKKNKRERDE 1922
            HP  P+LA+SG+D+D+KIW+P  E+      L D VI +N+   +E
Sbjct: 786  HPFDPILASSGIDYDIKIWSPLEESRIFNRKLADEVITRNELMLEE 831


>ref|NP_955010.1| WD and tetratricopeptide repeats protein 1 [Mus musculus].
          Length = 677

 Score =  127 bits (319), Expect = 4e-29
 Identities = 83/270 (30%), Positives = 129/270 (47%), Gaps = 30/270 (11%)
 Frame = +3

Query: 864  FVQRFRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDLKVVVWDWVRRQPVLDFESGHKSN 1043
            F++R  L+  L+GH+GCVN L +N++G  LASGSDD   +VWD +  + +L   +GH +N
Sbjct: 33   FIRRLGLEAELQGHSGCVNCLEWNEKGDLLASGSDDQHTIVWDPLHHKKLLSMHTGHTAN 92

Query: 1044 VFQAKFLPNSGDSTLAMCARDGQVRVAELSATQCCKNTKRVAQHKGASHKLALEPDSPCT 1223
            +F  KFLP++GD  L   A D +V V +L+  +          H     ++A  P  P T
Sbjct: 93   IFSVKFLPHAGDRILITGAADSKVHVHDLTVKE---TIHMFGDHTNRVKRIATAPMWPNT 149

Query: 1224 FLSAGEDAVVFTIDLRQDRPASXXXXXXXXXXXXGLYT--IYVNPANTHQFAVGGRDQFV 1397
            F SA ED ++   DLR++   S             +    + VNP + +  AVG    FV
Sbjct: 150  FWSAAEDGLIRQYDLRENSKHSEVLIDLTEYCGPMVEAKCLTVNPQDNNCLAVGASGPFV 209

Query: 1398 RIYDQRKIDENEN---------------------NGVLKKFCPHHL------VNSESKAN 1496
            R+YD R I  +                       +G  + +   HL       NS  +  
Sbjct: 210  RLYDIRMIHNHRKSMRQSPSAGVHTFCDRQKPLPDGAAQYYVAGHLPVKLPDYNSRLRVL 269

Query: 1497 I-TCLVYSHDGTELLASYNDEDIYLFNSSH 1583
            + T + +S +GTELL +   E +YLF+ ++
Sbjct: 270  VATYVTFSPNGTELLVNMGGEQVYLFDLTY 299



 Score = 91.7 bits (226), Expect = 2e-18
 Identities = 47/114 (41%), Positives = 73/114 (64%), Gaps = 1/114 (0%)
 Frame = +3

Query: 1542 SYNDEDIYLFNSSHSDGAQYIKRYKGHRNNAT-VKGVNFYGPKSEFVVSGSDCGHIFLWE 1718
            S +++++ L   S+     Y  RY GH N  T +K  NF+G  ++++VSGSD G  F+WE
Sbjct: 511  SISEDEMVLRERSYD----YQFRYCGHCNTTTDIKEANFFGSNAQYIVSGSDDGSFFIWE 566

Query: 1719 KSSCQIIQFMEGDKGGVVNCLEPHPHLPVLATSGLDHDVKIWAPTAETSTELTG 1880
            K +  +++ ++GD+  +VNCL+PHP    LATSG+D  V++W P  E S +LTG
Sbjct: 567  KETTNLVRVLQGDE-SIVNCLQPHPSYCFLATSGIDPVVRLWNPRPE-SEDLTG 618


>ref|NP_796241.3| DDB1- and CUL4-associated factor 5 [Mus musculus].
          Length = 946

 Score = 97.4 bits (241), Expect = 4e-20
 Identities = 84/334 (25%), Positives = 156/334 (46%), Gaps = 15/334 (4%)
 Frame = +3

Query: 894  LEGHTGCVNTLHF-NQRGTWLASGSDDLKVVVWDWVR----RQPVLDFESGHKSNVFQAK 1058
            L GH GCVN + F N  G WL SG DD +V++W   +    R   +  +  H SN+F   
Sbjct: 49   LLGHFGCVNAIEFSNNGGQWLVSGGDDRRVLLWHMEQAIHSRVKPIQLKGEHHSNIFCLA 108

Query: 1059 FLPNSGDSTLAMCARDGQVRVAELSATQCCKNTKRVAQHKGASHKLALEPDSPCTFLSAG 1238
            F  NSG++ +     D QV + ++ +++    T  V  H+ A + L++ P +   F S+ 
Sbjct: 109  F--NSGNTKVFSGGNDEQVILHDVESSE----TLDVFAHEDAVYGLSVSPVNDNIFASSS 162

Query: 1239 EDAVVFTIDLRQDRPASXXXXXXXXXXXXGLYTIYVNPANTHQFAVGGRDQFVRIYDQRK 1418
            +D  V   D+R+   +               +++  NP      A     + V ++D RK
Sbjct: 163  DDGRVLIWDIRE---SPHGEPFCLANYPSAFHSVMFNPVEPRLLATANSKEGVGLWDIRK 219

Query: 1419 IDENENNGVLKKFCPHHLVNSESKANITCLVYSHDGTELLASYNDEDIYLFNSSHSDGAQ 1598
               +     L ++  +  + S          ++ +GT+LLA        L++  HS    
Sbjct: 220  PQSS-----LLRYGGNLSLQSAMSVR-----FNSNGTQLLALRRRLPPVLYDI-HSRLPV 268

Query: 1599 YIKRYKGHRNNATVKGVNFYGPKSEFVVSGSDCGHIFLW----EKSSCQIIQFMEGD--- 1757
            +    +G+ N+ T+K   F G + ++++SGSD  ++++W    +  +  I + + G    
Sbjct: 269  FQFDNQGYFNSCTMKSCCFAGDRDQYILSGSDDFNLYMWKIPADPEAGGIGRVVNGAFMV 328

Query: 1758 -KG--GVVNCLEPHPHLPVLATSGLDHDVKIWAP 1850
             KG   +VN +  +PH  ++ +SG++  +KIW+P
Sbjct: 329  LKGHRSIVNQVRFNPHTYMICSSGVEKIIKIWSP 362


>ref|NP_543124.1| WD repeat-containing protein 5 [Mus musculus].
          Length = 334

 Score = 69.7 bits (169), Expect = 9e-12
 Identities = 76/333 (22%), Positives = 142/333 (42%), Gaps = 10/333 (3%)
 Frame = +3

Query: 876  FRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDLKVVVWDWVRRQPVLDFE---SGHKSNV 1046
            + L+  L GHT  V+++ F+  G WLAS S D  + +W     +    FE   SGHK  +
Sbjct: 35   YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK----FEKTISGHKLGI 90

Query: 1047 FQAKFLPNSGDSTLAMCARDGQ-VRVAELSATQCCKNTKRVAQHKGASHKLALEPDSPCT 1223
                +   S DS L + A D + +++ ++S+ +C K  K    H          P S   
Sbjct: 91   SDVAW---SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKG---HSNYVFCCNFNPQSNLI 144

Query: 1224 FLSAGEDAV----VFTIDLRQDRPASXXXXXXXXXXXXGLYTIYVNPANTHQFAVGGRDQ 1391
               + +++V    V T    +  PA             G   +               D 
Sbjct: 145  VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS-----------SSYDG 193

Query: 1392 FVRIYDQRKIDENENNGVLKKFCPHHLVNSESKANITCLVYSHDGTELLASYNDEDIYLF 1571
              RI+D                C   L++ ++   ++ + +S +G  +LA+  D  + L+
Sbjct: 194  LCRIWDTASGQ-----------CLKTLIDDDNPP-VSFVKFSPNGKYILAATLDNTLKLW 241

Query: 1572 NSSHSDGAQYIKRYKGHRNNATVKGVNFYGPKSEFVVSGSDCGHIFLWEKSSCQIIQFME 1751
            + S     + +K Y GH+N       NF     +++VSGS+   +++W   + +I+Q ++
Sbjct: 242  DYSKG---KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 298

Query: 1752 GDKGGVVNCLEPHPHLPVLATSGLDHD--VKIW 1844
            G    V++    HP   ++A++ L++D  +K+W
Sbjct: 299  GHTDVVIS-TACHPTENIIASAALENDKTIKLW 330


>ref|NP_081389.1| WD repeat-containing protein 5B [Mus musculus].
          Length = 328

 Score = 62.8 bits (151), Expect = 1e-09
 Identities = 73/357 (20%), Positives = 148/357 (41%), Gaps = 5/357 (1%)
 Frame = +3

Query: 792  LPALRERELGSSARFVYEACGARVFVQRFRLQHGLEGHTGCVNTLHFNQRGTWLASGSDD 971
            LPA R + L S+ R   E          + L+  L GH+  ++++ F+  G WLAS + D
Sbjct: 6    LPAERAQSLLSAPRREEEPQKPN-----YALRLTLAGHSAAISSVKFSPNGEWLASSAAD 60

Query: 972  LKVVVW---DWVRRQPVLDFESGHKSNVFQAKFLPNSGDSTLAMCARDGQVRVAELSATQ 1142
              +++W   D   ++ +     GH   +    +  +S  S L   + D  ++V ++ + +
Sbjct: 61   ALIIIWGAYDGNCKKTLY----GHSLEISDVAW--SSDSSRLVSASDDKTLKVWDMRSGK 114

Query: 1143 CCKNTKRVAQHKGASHKLALEPDSPCTFLSAGEDAVVFTIDLRQDRPASXXXXXXXXXXX 1322
            C K  K       +      + + P   + +G     F   ++     +           
Sbjct: 115  CLKTLKG-----HSDFVFCCDFNPPSNLIVSGS----FDESVKIWEVKTGKCLKTLSAHS 165

Query: 1323 XGLYTIYVNPANTHQFAVGGRDQFVRIYDQRKIDENENNGVLKKFCPHHLVNSESKANIT 1502
              +  +  N  N      G  D   RI+D                C   L + E    ++
Sbjct: 166  DPISAVNFN-CNGSLIVSGSYDGLCRIWDAASGQ-----------CLRTLAD-EGNPPVS 212

Query: 1503 CLVYSHDGTELLASYNDEDIYLFNSSHSDGAQYIKRYKGHRNNATVKGVNFYGPKSEFVV 1682
             + +S +G  +L +  D  + L++ S     + +K Y GH+N       +F     ++VV
Sbjct: 213  FVKFSPNGKYILTATLDNTLKLWDYSRG---RCLKTYTGHKNEKYCLFASFSVTGRKWVV 269

Query: 1683 SGSDCGHIFLWEKSSCQIIQFMEGDKGGVVNCLEPHPHLPVLATSGLDHD--VKIWA 1847
            SGS+   +++W   + +I+Q ++G    V++    HP   ++A++ L++D  +K+W+
Sbjct: 270  SGSEDNMVYIWNLQTKEIVQRLQGHTDVVISA-ACHPTKNIIASAALENDKTIKVWS 325


>ref|NP_084172.1| WD repeat-containing protein 82 [Mus musculus].
          Length = 313

 Score = 62.4 bits (150), Expect = 1e-09
 Identities = 74/338 (21%), Positives = 131/338 (38%), Gaps = 7/338 (2%)
 Frame = +3

Query: 867  VQRFRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDLKVVVWDWVRRQPVLDFESGHKSNV 1046
            ++ FR+      ++  +N   F+  G  + S SDD  +V++D    +P     S  K  V
Sbjct: 8    LRSFRVAKVFRENSDKINCFDFSPNGETVISSSDDDSIVLYDCQEGKPKRTLYS-KKYGV 66

Query: 1047 FQAKFLPNSGDSTLAMCARDGQVRVAELSATQCCKNTKRVAQHKGASHKLALEPDSPC-- 1220
               ++   +     +    D  +R   L       + K +    G S ++     SP   
Sbjct: 67   DLIRYTHAANTVVYSSNKIDDTIRYLSLH------DNKYIRYFPGHSKRVVALSMSPVDD 120

Query: 1221 TFLSAGEDAVVFTIDLRQDRPASXXXXXXXXXXXXGLYTIYVNPANTHQ-----FAVGGR 1385
            TF+S   D  +   DLR                  GL  +   P  +       FA G  
Sbjct: 121  TFISGSLDKTIRLWDLRSPN-------------CQGLMHLQGKPVCSFDPEGLIFAAGVN 167

Query: 1386 DQFVRIYDQRKIDENENNGVLKKFCPHHLVNSESKANITCLVYSHDGTELLASYNDEDIY 1565
             + V++YD R  D+    G    F   +    +     T L +S+DG  +L S N   I 
Sbjct: 168  SEMVKLYDLRSFDK----GPFATFKMQY----DRTCEWTGLKFSNDGKLILISTNGSFIR 219

Query: 1566 LFNSSHSDGAQYIKRYKGHRNNATVKGVNFYGPKSEFVVSGSDCGHIFLWEKSSCQIIQF 1745
            L ++        +  + G+ N+  V     + P S+F++ GS+ G I +W   S   +  
Sbjct: 220  LIDAFKG---VVMHTFGGYANSKAVTLEASFTPDSQFIMIGSEDGKIHVWNGESGIKVAV 276

Query: 1746 MEGDKGGVVNCLEPHPHLPVLATSGLDHDVKIWAPTAE 1859
            ++G   G + CL+ +P     A++    ++  W PT +
Sbjct: 277  LDGKHTGPITCLQFNPKFMTFASA--CSNMAFWLPTID 312


>ref|NP_079921.2| U5 small nuclear ribonucleoprotein 40 kDa protein [Mus musculus].
          Length = 358

 Score = 49.7 bits (117), Expect = 1e-05
 Identities = 66/279 (23%), Positives = 116/279 (41%), Gaps = 4/279 (1%)
 Frame = +3

Query: 894  LEGHTGCVNTLHFNQRGTWLASGSDDLKVVVWDWVRRQPVLDFESGHKSNVFQAKFLPNS 1073
            L+GH+G V  LH+N  G+ L S S D  V VWD    + V   + GH S V  + +    
Sbjct: 106  LKGHSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLK-GHTSFV-NSCYPARR 163

Query: 1074 GDSTLAMCARDGQVRVAEL---SATQCCKNTKRVAQHKGASHKLALE-PDSPCTFLSAGE 1241
            G   +   + DG V++ ++   +A Q  +NT +V         LA+   D+    +S G 
Sbjct: 164  GPQLVCTGSDDGTVKLWDIRKKAAVQTFQNTYQV---------LAVTFNDTSDQIISGGI 214

Query: 1242 DAVVFTIDLRQDRPASXXXXXXXXXXXXGLYTIYVNPANTHQFAVGGRDQFVRIYDQRKI 1421
            D  +   DLRQ++                L       +          D  VR++D R  
Sbjct: 215  DNDIKVWDLRQNKLTYTMRGHADSVTGLSL------SSEGSYLLSNAMDNTVRVWDVRPF 268

Query: 1422 DENENNGVLKKFCPHHLVNSESKANITCLVYSHDGTELLASYNDEDIYLFNSSHSDGAQY 1601
               E      K    ++ N E   N+    +S DG+++ A   D  +Y+++++     + 
Sbjct: 269  APKER---CVKIFQGNVHNFEK--NLLRCSWSPDGSKIAAGSADRFVYVWDTT---SRRV 320

Query: 1602 IKRYKGHRNNATVKGVNFYGPKSEFVVSGSDCGHIFLWE 1718
            + +  GH    ++  V F+ P    ++S S    +++ E
Sbjct: 321  LYKLPGHA--GSINEVAFH-PDEPIILSASSDKRLYMGE 356


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 74,553,500
Number of extensions: 2089291
Number of successful extensions: 9145
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 9033
Number of HSP's successfully gapped: 11
Length of query: 755
Length of database: 15,617,559
Length adjustment: 109
Effective length of query: 646
Effective length of database: 12,343,635
Effective search space: 7973988210
Effective search space used: 7973988210
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007192
         (2267 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_003355147.1| PREDICTED: DDB1- and CUL4-associated factor ...  1056   0.0  
Alignment   gi|XP_001928921.1| PREDICTED: DDB1- and CUL4-associated factor ...  1056   0.0  
Alignment   gi|XP_001928902.1| PREDICTED: DDB1- and CUL4-associated factor ...  1056   0.0  
Alignment   gi|XP_001928897.1| PREDICTED: DDB1- and CUL4-associated factor ...  1056   0.0  
Alignment   gi|XP_003135039.1| PREDICTED: DDB1- and CUL4-associated factor ...   788   0.0  
Alignment   gi|NP_001129436.1| WD and tetratricopeptide repeats protein 1 [...   125   8e-29
Alignment   gi|XP_003125692.2| PREDICTED: DDB1- and CUL4-associated factor ...   103   4e-22
Alignment   gi|XP_003353752.1| PREDICTED: WD repeat-containing protein 5 [S...    70   6e-12
Alignment   gi|XP_003358840.1| PREDICTED: WD repeat-containing protein 5B-l...    65   1e-10
Alignment   gi|XP_003132297.1| PREDICTED: WD repeat-containing protein 82 [...    62   1e-09

>ref|XP_003355147.1| PREDICTED: DDB1- and CUL4-associated factor 8 [Sus scrofa].
          Length = 596

 Score = 1056 bits (2730), Expect = 0.0
 Identities = 526/596 (88%), Positives = 526/596 (88%)
 Frame = +3

Query: 333  MSSKGSSTDGKTDLANGSLSSSPEEMSGAEEGRETSSGIEVEASDLSLSLTGDDGGPNRT 512
            MSSKGSSTDGKTDLANGSLSSSPEEMSGAEEGRETSSGIEVEASDLSLSLTGDDGGPNRT
Sbjct: 1    MSSKGSSTDGKTDLANGSLSSSPEEMSGAEEGRETSSGIEVEASDLSLSLTGDDGGPNRT 60

Query: 513  STESRGTDTESSGEDKDSDSMEDTGHYSINDENQVHDPSXXXXXXXXXXXXXXXXXXXXX 692
            STESRGTDTESSGEDKDSDSMEDTGHYSINDENQVHDPS                     
Sbjct: 61   STESRGTDTESSGEDKDSDSMEDTGHYSINDENQVHDPSEEEEEEEEEEEEHPRRRVQRK 120

Query: 693  XANRDQDSSDDERALEDWVASETSALPRPRWQALPALRERELGSSARFVYEACGARVFVQ 872
             ANRDQDSSDDERALEDWVASETSALPRPRWQALPALRERELGSSARFVYEACGARVFVQ
Sbjct: 121  RANRDQDSSDDERALEDWVASETSALPRPRWQALPALRERELGSSARFVYEACGARVFVQ 180

Query: 873  RFRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDLKVVVWDWVRRQPVLDFESGHKSNVFQ 1052
            RFRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDLKVVVWDWVRRQPVLDFESGHKSNVFQ
Sbjct: 181  RFRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDLKVVVWDWVRRQPVLDFESGHKSNVFQ 240

Query: 1053 AKFLPNSGDSTLAMCARDGQVRVAELSATQCCKNTKRVAQHKGASHKLALEPDSPCTFLS 1232
            AKFLPNSGDSTLAMCARDGQVRVAELSATQCCKNTKRVAQHKGASHKLALEPDSPCTFLS
Sbjct: 241  AKFLPNSGDSTLAMCARDGQVRVAELSATQCCKNTKRVAQHKGASHKLALEPDSPCTFLS 300

Query: 1233 AGEDAVVFTIDLRQDRPASXXXXXXXXXXXXGLYTIYVNPANTHQFAVGGRDQFVRIYDQ 1412
            AGEDAVVFTIDLRQDRPAS            GLYTIYVNPANTHQFAVGGRDQFVRIYDQ
Sbjct: 301  AGEDAVVFTIDLRQDRPASKLVVTKEKEKKVGLYTIYVNPANTHQFAVGGRDQFVRIYDQ 360

Query: 1413 RKIDENENNGVLKKFCPHHLVNSESKANITCLVYSHDGTELLASYNDEDIYLFNSSHSDG 1592
            RKIDENENNGVLKKFCPHHLVNSESKANITCLVYSHDGTELLASYNDEDIYLFNSSHSDG
Sbjct: 361  RKIDENENNGVLKKFCPHHLVNSESKANITCLVYSHDGTELLASYNDEDIYLFNSSHSDG 420

Query: 1593 AQYIKRYKGHRNNATVKGVNFYGPKSEFVVSGSDCGHIFLWEKSSCQIIQFMEGDKGGVV 1772
            AQYIKRYKGHRNNATVKGVNFYGPKSEFVVSGSDCGHIFLWEKSSCQIIQFMEGDKGGVV
Sbjct: 421  AQYIKRYKGHRNNATVKGVNFYGPKSEFVVSGSDCGHIFLWEKSSCQIIQFMEGDKGGVV 480

Query: 1773 NCLEPHPHLPVLATSGLDHDVKIWAPTAETSTELTGLKDVIKKNKRERDEDSLHHTDLFD 1952
            NCLEPHPHLPVLATSGLDHDVKIWAPTAETSTELTGLKDVIKKNKRERDEDSLHHTDLFD
Sbjct: 481  NCLEPHPHLPVLATSGLDHDVKIWAPTAETSTELTGLKDVIKKNKRERDEDSLHHTDLFD 540

Query: 1953 SHMLWFLMXXXXXXXXXXXXXEPGVGXXXXXXXXXXXXXXXXXXXXXXXRVQCMPS 2120
            SHMLWFLM             EPGVG                       RVQCMPS
Sbjct: 541  SHMLWFLMHHLRQRRHHRRWREPGVGATDADSDESPSSSDTSDEEEGPDRVQCMPS 596


>ref|XP_001928921.1| PREDICTED: DDB1- and CUL4-associated factor 8 isoform 3 [Sus scrofa].
          Length = 596

 Score = 1056 bits (2730), Expect = 0.0
 Identities = 526/596 (88%), Positives = 526/596 (88%)
 Frame = +3

Query: 333  MSSKGSSTDGKTDLANGSLSSSPEEMSGAEEGRETSSGIEVEASDLSLSLTGDDGGPNRT 512
            MSSKGSSTDGKTDLANGSLSSSPEEMSGAEEGRETSSGIEVEASDLSLSLTGDDGGPNRT
Sbjct: 1    MSSKGSSTDGKTDLANGSLSSSPEEMSGAEEGRETSSGIEVEASDLSLSLTGDDGGPNRT 60

Query: 513  STESRGTDTESSGEDKDSDSMEDTGHYSINDENQVHDPSXXXXXXXXXXXXXXXXXXXXX 692
            STESRGTDTESSGEDKDSDSMEDTGHYSINDENQVHDPS                     
Sbjct: 61   STESRGTDTESSGEDKDSDSMEDTGHYSINDENQVHDPSEEEEEEEEEEEEHPRRRVQRK 120

Query: 693  XANRDQDSSDDERALEDWVASETSALPRPRWQALPALRERELGSSARFVYEACGARVFVQ 872
             ANRDQDSSDDERALEDWVASETSALPRPRWQALPALRERELGSSARFVYEACGARVFVQ
Sbjct: 121  RANRDQDSSDDERALEDWVASETSALPRPRWQALPALRERELGSSARFVYEACGARVFVQ 180

Query: 873  RFRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDLKVVVWDWVRRQPVLDFESGHKSNVFQ 1052
            RFRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDLKVVVWDWVRRQPVLDFESGHKSNVFQ
Sbjct: 181  RFRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDLKVVVWDWVRRQPVLDFESGHKSNVFQ 240

Query: 1053 AKFLPNSGDSTLAMCARDGQVRVAELSATQCCKNTKRVAQHKGASHKLALEPDSPCTFLS 1232
            AKFLPNSGDSTLAMCARDGQVRVAELSATQCCKNTKRVAQHKGASHKLALEPDSPCTFLS
Sbjct: 241  AKFLPNSGDSTLAMCARDGQVRVAELSATQCCKNTKRVAQHKGASHKLALEPDSPCTFLS 300

Query: 1233 AGEDAVVFTIDLRQDRPASXXXXXXXXXXXXGLYTIYVNPANTHQFAVGGRDQFVRIYDQ 1412
            AGEDAVVFTIDLRQDRPAS            GLYTIYVNPANTHQFAVGGRDQFVRIYDQ
Sbjct: 301  AGEDAVVFTIDLRQDRPASKLVVTKEKEKKVGLYTIYVNPANTHQFAVGGRDQFVRIYDQ 360

Query: 1413 RKIDENENNGVLKKFCPHHLVNSESKANITCLVYSHDGTELLASYNDEDIYLFNSSHSDG 1592
            RKIDENENNGVLKKFCPHHLVNSESKANITCLVYSHDGTELLASYNDEDIYLFNSSHSDG
Sbjct: 361  RKIDENENNGVLKKFCPHHLVNSESKANITCLVYSHDGTELLASYNDEDIYLFNSSHSDG 420

Query: 1593 AQYIKRYKGHRNNATVKGVNFYGPKSEFVVSGSDCGHIFLWEKSSCQIIQFMEGDKGGVV 1772
            AQYIKRYKGHRNNATVKGVNFYGPKSEFVVSGSDCGHIFLWEKSSCQIIQFMEGDKGGVV
Sbjct: 421  AQYIKRYKGHRNNATVKGVNFYGPKSEFVVSGSDCGHIFLWEKSSCQIIQFMEGDKGGVV 480

Query: 1773 NCLEPHPHLPVLATSGLDHDVKIWAPTAETSTELTGLKDVIKKNKRERDEDSLHHTDLFD 1952
            NCLEPHPHLPVLATSGLDHDVKIWAPTAETSTELTGLKDVIKKNKRERDEDSLHHTDLFD
Sbjct: 481  NCLEPHPHLPVLATSGLDHDVKIWAPTAETSTELTGLKDVIKKNKRERDEDSLHHTDLFD 540

Query: 1953 SHMLWFLMXXXXXXXXXXXXXEPGVGXXXXXXXXXXXXXXXXXXXXXXXRVQCMPS 2120
            SHMLWFLM             EPGVG                       RVQCMPS
Sbjct: 541  SHMLWFLMHHLRQRRHHRRWREPGVGATDADSDESPSSSDTSDEEEGPDRVQCMPS 596


>ref|XP_001928902.1| PREDICTED: DDB1- and CUL4-associated factor 8 isoform 2 [Sus scrofa].
          Length = 596

 Score = 1056 bits (2730), Expect = 0.0
 Identities = 526/596 (88%), Positives = 526/596 (88%)
 Frame = +3

Query: 333  MSSKGSSTDGKTDLANGSLSSSPEEMSGAEEGRETSSGIEVEASDLSLSLTGDDGGPNRT 512
            MSSKGSSTDGKTDLANGSLSSSPEEMSGAEEGRETSSGIEVEASDLSLSLTGDDGGPNRT
Sbjct: 1    MSSKGSSTDGKTDLANGSLSSSPEEMSGAEEGRETSSGIEVEASDLSLSLTGDDGGPNRT 60

Query: 513  STESRGTDTESSGEDKDSDSMEDTGHYSINDENQVHDPSXXXXXXXXXXXXXXXXXXXXX 692
            STESRGTDTESSGEDKDSDSMEDTGHYSINDENQVHDPS                     
Sbjct: 61   STESRGTDTESSGEDKDSDSMEDTGHYSINDENQVHDPSEEEEEEEEEEEEHPRRRVQRK 120

Query: 693  XANRDQDSSDDERALEDWVASETSALPRPRWQALPALRERELGSSARFVYEACGARVFVQ 872
             ANRDQDSSDDERALEDWVASETSALPRPRWQALPALRERELGSSARFVYEACGARVFVQ
Sbjct: 121  RANRDQDSSDDERALEDWVASETSALPRPRWQALPALRERELGSSARFVYEACGARVFVQ 180

Query: 873  RFRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDLKVVVWDWVRRQPVLDFESGHKSNVFQ 1052
            RFRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDLKVVVWDWVRRQPVLDFESGHKSNVFQ
Sbjct: 181  RFRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDLKVVVWDWVRRQPVLDFESGHKSNVFQ 240

Query: 1053 AKFLPNSGDSTLAMCARDGQVRVAELSATQCCKNTKRVAQHKGASHKLALEPDSPCTFLS 1232
            AKFLPNSGDSTLAMCARDGQVRVAELSATQCCKNTKRVAQHKGASHKLALEPDSPCTFLS
Sbjct: 241  AKFLPNSGDSTLAMCARDGQVRVAELSATQCCKNTKRVAQHKGASHKLALEPDSPCTFLS 300

Query: 1233 AGEDAVVFTIDLRQDRPASXXXXXXXXXXXXGLYTIYVNPANTHQFAVGGRDQFVRIYDQ 1412
            AGEDAVVFTIDLRQDRPAS            GLYTIYVNPANTHQFAVGGRDQFVRIYDQ
Sbjct: 301  AGEDAVVFTIDLRQDRPASKLVVTKEKEKKVGLYTIYVNPANTHQFAVGGRDQFVRIYDQ 360

Query: 1413 RKIDENENNGVLKKFCPHHLVNSESKANITCLVYSHDGTELLASYNDEDIYLFNSSHSDG 1592
            RKIDENENNGVLKKFCPHHLVNSESKANITCLVYSHDGTELLASYNDEDIYLFNSSHSDG
Sbjct: 361  RKIDENENNGVLKKFCPHHLVNSESKANITCLVYSHDGTELLASYNDEDIYLFNSSHSDG 420

Query: 1593 AQYIKRYKGHRNNATVKGVNFYGPKSEFVVSGSDCGHIFLWEKSSCQIIQFMEGDKGGVV 1772
            AQYIKRYKGHRNNATVKGVNFYGPKSEFVVSGSDCGHIFLWEKSSCQIIQFMEGDKGGVV
Sbjct: 421  AQYIKRYKGHRNNATVKGVNFYGPKSEFVVSGSDCGHIFLWEKSSCQIIQFMEGDKGGVV 480

Query: 1773 NCLEPHPHLPVLATSGLDHDVKIWAPTAETSTELTGLKDVIKKNKRERDEDSLHHTDLFD 1952
            NCLEPHPHLPVLATSGLDHDVKIWAPTAETSTELTGLKDVIKKNKRERDEDSLHHTDLFD
Sbjct: 481  NCLEPHPHLPVLATSGLDHDVKIWAPTAETSTELTGLKDVIKKNKRERDEDSLHHTDLFD 540

Query: 1953 SHMLWFLMXXXXXXXXXXXXXEPGVGXXXXXXXXXXXXXXXXXXXXXXXRVQCMPS 2120
            SHMLWFLM             EPGVG                       RVQCMPS
Sbjct: 541  SHMLWFLMHHLRQRRHHRRWREPGVGATDADSDESPSSSDTSDEEEGPDRVQCMPS 596


>ref|XP_001928897.1| PREDICTED: DDB1- and CUL4-associated factor 8 isoform 1 [Sus scrofa].
          Length = 596

 Score = 1056 bits (2730), Expect = 0.0
 Identities = 526/596 (88%), Positives = 526/596 (88%)
 Frame = +3

Query: 333  MSSKGSSTDGKTDLANGSLSSSPEEMSGAEEGRETSSGIEVEASDLSLSLTGDDGGPNRT 512
            MSSKGSSTDGKTDLANGSLSSSPEEMSGAEEGRETSSGIEVEASDLSLSLTGDDGGPNRT
Sbjct: 1    MSSKGSSTDGKTDLANGSLSSSPEEMSGAEEGRETSSGIEVEASDLSLSLTGDDGGPNRT 60

Query: 513  STESRGTDTESSGEDKDSDSMEDTGHYSINDENQVHDPSXXXXXXXXXXXXXXXXXXXXX 692
            STESRGTDTESSGEDKDSDSMEDTGHYSINDENQVHDPS                     
Sbjct: 61   STESRGTDTESSGEDKDSDSMEDTGHYSINDENQVHDPSEEEEEEEEEEEEHPRRRVQRK 120

Query: 693  XANRDQDSSDDERALEDWVASETSALPRPRWQALPALRERELGSSARFVYEACGARVFVQ 872
             ANRDQDSSDDERALEDWVASETSALPRPRWQALPALRERELGSSARFVYEACGARVFVQ
Sbjct: 121  RANRDQDSSDDERALEDWVASETSALPRPRWQALPALRERELGSSARFVYEACGARVFVQ 180

Query: 873  RFRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDLKVVVWDWVRRQPVLDFESGHKSNVFQ 1052
            RFRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDLKVVVWDWVRRQPVLDFESGHKSNVFQ
Sbjct: 181  RFRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDLKVVVWDWVRRQPVLDFESGHKSNVFQ 240

Query: 1053 AKFLPNSGDSTLAMCARDGQVRVAELSATQCCKNTKRVAQHKGASHKLALEPDSPCTFLS 1232
            AKFLPNSGDSTLAMCARDGQVRVAELSATQCCKNTKRVAQHKGASHKLALEPDSPCTFLS
Sbjct: 241  AKFLPNSGDSTLAMCARDGQVRVAELSATQCCKNTKRVAQHKGASHKLALEPDSPCTFLS 300

Query: 1233 AGEDAVVFTIDLRQDRPASXXXXXXXXXXXXGLYTIYVNPANTHQFAVGGRDQFVRIYDQ 1412
            AGEDAVVFTIDLRQDRPAS            GLYTIYVNPANTHQFAVGGRDQFVRIYDQ
Sbjct: 301  AGEDAVVFTIDLRQDRPASKLVVTKEKEKKVGLYTIYVNPANTHQFAVGGRDQFVRIYDQ 360

Query: 1413 RKIDENENNGVLKKFCPHHLVNSESKANITCLVYSHDGTELLASYNDEDIYLFNSSHSDG 1592
            RKIDENENNGVLKKFCPHHLVNSESKANITCLVYSHDGTELLASYNDEDIYLFNSSHSDG
Sbjct: 361  RKIDENENNGVLKKFCPHHLVNSESKANITCLVYSHDGTELLASYNDEDIYLFNSSHSDG 420

Query: 1593 AQYIKRYKGHRNNATVKGVNFYGPKSEFVVSGSDCGHIFLWEKSSCQIIQFMEGDKGGVV 1772
            AQYIKRYKGHRNNATVKGVNFYGPKSEFVVSGSDCGHIFLWEKSSCQIIQFMEGDKGGVV
Sbjct: 421  AQYIKRYKGHRNNATVKGVNFYGPKSEFVVSGSDCGHIFLWEKSSCQIIQFMEGDKGGVV 480

Query: 1773 NCLEPHPHLPVLATSGLDHDVKIWAPTAETSTELTGLKDVIKKNKRERDEDSLHHTDLFD 1952
            NCLEPHPHLPVLATSGLDHDVKIWAPTAETSTELTGLKDVIKKNKRERDEDSLHHTDLFD
Sbjct: 481  NCLEPHPHLPVLATSGLDHDVKIWAPTAETSTELTGLKDVIKKNKRERDEDSLHHTDLFD 540

Query: 1953 SHMLWFLMXXXXXXXXXXXXXEPGVGXXXXXXXXXXXXXXXXXXXXXXXRVQCMPS 2120
            SHMLWFLM             EPGVG                       RVQCMPS
Sbjct: 541  SHMLWFLMHHLRQRRHHRRWREPGVGATDADSDESPSSSDTSDEEEGPDRVQCMPS 596


>ref|XP_003135039.1| PREDICTED: DDB1- and CUL4-associated factor 8-like [Sus scrofa].
          Length = 604

 Score =  788 bits (2035), Expect = 0.0
 Identities = 401/607 (66%), Positives = 449/607 (73%), Gaps = 11/607 (1%)
 Frame = +3

Query: 333  MSSKGSSTDGKTDLANGSLSSSPEEMSGAEEGRETSSGIEVEASDLSLSLTGDDGG---- 500
            M+   SSTDG  DL N  LS  PEE SG E GRE     E+    LS++  G D G    
Sbjct: 1    MADDESSTDGPPDLENRGLSDHPEESSGVEAGREACPDTEII---LSVTRGGGDFGSGGI 57

Query: 501  PNRTSTESRGTDTESSGEDKDSDSMEDTGHYSINDENQVH-------DPSXXXXXXXXXX 659
            P   STE++GT +E S ED D + +ED  ++ INDENQ H                    
Sbjct: 58   PEHASTENQGTSSERSSEDIDIECVEDADNFFINDENQFHYREEEELREEEEFGEEEQEE 117

Query: 660  XXXXXXXXXXXXANRDQDSSDDERALEDWVASETSALPRPRWQALPALRERELGSSARFV 839
                        AN  +  S +++ALE+WV+SETSALP PRW+ L ALRER+LGSSARFV
Sbjct: 118  LAEEQPQVQCGEANHGECLSAEDQALEEWVSSETSALPLPRWRVLNALRERQLGSSARFV 177

Query: 840  YEACGARVFVQRFRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDLKVVVWDWVRRQPVLD 1019
            YEACGARVFVQ F+LQ+GLEGH GCVNTLHFNQRGTWLA+ SDDLKV++WDWVR+QPVL 
Sbjct: 178  YEACGARVFVQHFQLQYGLEGHNGCVNTLHFNQRGTWLATSSDDLKVILWDWVRQQPVLV 237

Query: 1020 FESGHKSNVFQAKFLPNSGDSTLAMCARDGQVRVAELSATQCCKNTKRVAQHKGASHKLA 1199
            FESGH++NVFQAKFLPN GD T+AMCARDGQVRVAELSA   CKNTKRVAQH+GA+HKLA
Sbjct: 238  FESGHRNNVFQAKFLPNCGDPTMAMCARDGQVRVAELSAIPHCKNTKRVAQHRGAAHKLA 297

Query: 1200 LEPDSPCTFLSAGEDAVVFTIDLRQDRPASXXXXXXXXXXXXGLYTIYVNPANTHQFAVG 1379
            LEPDSP  FL++GEDAVVF IDLRQ RPAS            GLYT+ VNPA+T+QFAVG
Sbjct: 298  LEPDSPFKFLTSGEDAVVFAIDLRQGRPASRVVVTKDKEKKVGLYTVCVNPADTYQFAVG 357

Query: 1380 GRDQFVRIYDQRKIDENENNGVLKKFCPHHLVNSESKANITCLVYSHDGTELLASYNDED 1559
            GRDQFVRIYDQRKIDENENNGVLKKFCPHHLV+ +S ANIT LVYSHDGTELLASYNDED
Sbjct: 358  GRDQFVRIYDQRKIDENENNGVLKKFCPHHLVSCDSTANITGLVYSHDGTELLASYNDED 417

Query: 1560 IYLFNSSHSDGAQYIKRYKGHRNNATVKGVNFYGPKSEFVVSGSDCGHIFLWEKSSCQII 1739
            IYLFNSSH DGAQY+KRYKGHRNNATVKGVNFYGP+SEFVVSGSDCGHIFLWEKSSCQI+
Sbjct: 418  IYLFNSSHCDGAQYVKRYKGHRNNATVKGVNFYGPRSEFVVSGSDCGHIFLWEKSSCQIV 477

Query: 1740 QFMEGDKGGVVNCLEPHPHLPVLATSGLDHDVKIWAPTAETSTELTGLKDVIKKNKRERD 1919
            QFMEGDKGG VNCLEPHP+LPV+ATSGLDHD KIWAPTA+T+T L GLK+VIKKNK+ERD
Sbjct: 478  QFMEGDKGGTVNCLEPHPYLPVMATSGLDHDAKIWAPTAKTTTGLIGLKNVIKKNKQERD 537

Query: 1920 EDSLHHTDLFDSHMLWFLMXXXXXXXXXXXXXEPGVGXXXXXXXXXXXXXXXXXXXXXXX 2099
            EDSLHH DLFDSHML FLM              P VG                       
Sbjct: 538  EDSLHHIDLFDSHMLRFLMHHLTQRGHHQHWRSPEVGVMDADLDESSSTSDTSEEEDNQD 597

Query: 2100 RVQCMPS 2120
             +QC+PS
Sbjct: 598  EMQCLPS 604


>ref|NP_001129436.1| WD and tetratricopeptide repeats protein 1 [Sus scrofa].
          Length = 678

 Score =  125 bits (315), Expect = 8e-29
 Identities = 82/270 (30%), Positives = 129/270 (47%), Gaps = 30/270 (11%)
 Frame = +3

Query: 864  FVQRFRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDLKVVVWDWVRRQPVLDFESGHKSN 1043
            F++R  L+  L+GH+GCVN L +N++G  LASGSDD   +VWD +  + +L   +GH +N
Sbjct: 33   FIRRLGLEAELQGHSGCVNCLEWNEKGDLLASGSDDQHTIVWDPLHHKKLLSMHTGHTAN 92

Query: 1044 VFQAKFLPNSGDSTLAMCARDGQVRVAELSATQCCKNTKRVAQHKGASHKLALEPDSPCT 1223
            +F  KFLP++GD  L   A D +V V +L+  +          H     ++A  P  P T
Sbjct: 93   IFSVKFLPHAGDRILITGAADSKVHVHDLTVKE---TIHMFGDHTNRVKRIATAPMWPNT 149

Query: 1224 FLSAGEDAVVFTIDLRQDRPASXXXXXXXXXXXXGLYT--IYVNPANTHQFAVGGRDQFV 1397
            F SA ED ++   DLR++   S             +    + VNP + +  AVG    FV
Sbjct: 150  FWSAAEDGLIRQYDLRENSKHSEVLIDLTEYCGQLVEAKCLTVNPQDNNCLAVGASGPFV 209

Query: 1398 RIYDQRKIDENEN---------------------NGVLKKFCPHHL------VNSESKAN 1496
            R+YD R I  +                       +G  + +   HL       N+  +  
Sbjct: 210  RLYDIRMIHNHRKSMKQSPSAGVHTFCDRQKPLPDGAAQYYVAGHLPVKLPDYNNRLRVL 269

Query: 1497 I-TCLVYSHDGTELLASYNDEDIYLFNSSH 1583
            + T + +S +GTELL +   E +YLF+ ++
Sbjct: 270  VATYVTFSPNGTELLVNMGGEQVYLFDLTY 299



 Score = 93.2 bits (230), Expect = 5e-19
 Identities = 51/136 (37%), Positives = 82/136 (60%), Gaps = 6/136 (4%)
 Frame = +3

Query: 1542 SYNDEDIYLFNSSHSDGAQYIKRYKGHRNNAT-VKGVNFYGPKSEFVVSGSDCGHIFLWE 1718
            S +++++ L   S+     Y  RY GH N  T +K  NF+G  ++++VSGSD G  F+WE
Sbjct: 512  SISEDEMVLRERSYD----YQFRYCGHCNTTTDIKEANFFGSNAQYIVSGSDDGSFFIWE 567

Query: 1719 KSSCQIIQFMEGDKGGVVNCLEPHPHLPVLATSGLDHDVKIWAPTAETSTELTG-----L 1883
            K +  +++ ++GD+  +VNCL+PHP    LATSG+D  V++W P  E S +LTG     +
Sbjct: 568  KETTNLVRVLQGDE-SIVNCLQPHPSYCFLATSGIDPVVRLWNPRPE-SEDLTGRVVEDM 625

Query: 1884 KDVIKKNKRERDEDSL 1931
            +   + N+R  + D L
Sbjct: 626  EGASQANQRRMNADPL 641


>ref|XP_003125692.2| PREDICTED: DDB1- and CUL4-associated factor 6-like [Sus scrofa].
          Length = 1234

 Score =  103 bits (257), Expect = 4e-22
 Identities = 49/100 (49%), Positives = 70/100 (70%), Gaps = 1/100 (1%)
 Frame = +3

Query: 1611 YKGHRNNAT-VKGVNFYGPKSEFVVSGSDCGHIFLWEKSSCQIIQFMEGDKGGVVNCLEP 1787
            YKGHRN+ T +K  NF+G  + FV+SGSDCGHIF+W++ + + +  +E D   VVNCL+P
Sbjct: 1095 YKGHRNSRTMIKEANFWG--ANFVMSGSDCGHIFIWDRHTAEHLMLLEADNH-VVNCLQP 1151

Query: 1788 HPHLPVLATSGLDHDVKIWAPTAETSTELTGLKDVIKKNK 1907
            HP  P+LA+SG+D+D+KIW+P  E+      L D +K  K
Sbjct: 1152 HPFDPILASSGIDYDIKIWSPLEESRIFNRKLADEVKNLK 1191



 Score = 93.2 bits (230), Expect = 5e-19
 Identities = 49/106 (46%), Positives = 71/106 (66%), Gaps = 2/106 (1%)
 Frame = +3

Query: 1611 YKGHRNNAT-VKGVNFYGPKSEFVVSGSDCGHIFLWEKSSCQIIQFMEGDKGGVVNCLEP 1787
            YKGHRN+ T +K  NF+G  + FV+SGSDCGHIF+W++ + + +  +E D   VVNCL+P
Sbjct: 339  YKGHRNSRTMIKEANFWG--ANFVMSGSDCGHIFIWDRHTAEHLMLLEAD-NHVVNCLQP 395

Query: 1788 HPHLPVLATSGLDHDVKIWAPTAETSTELTGLKD-VIKKNKRERDE 1922
            HP  P   +SG+D+D+KIW+P  E+      L D VI +N+   +E
Sbjct: 396  HPFDP--TSSGIDYDIKIWSPLEESRIFNRKLADEVITRNELMLEE 439



 Score = 65.9 bits (159), Expect = 9e-11
 Identities = 48/158 (30%), Positives = 68/158 (43%), Gaps = 10/158 (6%)
 Frame = +3

Query: 1206 PDSPCTFLSAGEDAVVFTIDLRQDRPASXXXXXXXXXXXX--GLYTIYVNPANTHQFAVG 1379
            P+ P TFLS GED  V   D R     +                 ++ + P   +  AVG
Sbjct: 17   PNDPYTFLSCGEDGTVRWFDTRIKTSCTKEDCKDDILINCRRAATSVAICPPIPYYLAVG 76

Query: 1380 GRDQFVRIYDQRKIDENENN--------GVLKKFCPHHLVNSESKANITCLVYSHDGTEL 1535
              D  VRIYD+R +              G++ +F P HL N   +  +T L YS DG E+
Sbjct: 77   CSDSSVRIYDRRMLGTRATGNYAGRGTTGMVARFIPSHLNNKSCR--VTSLCYSEDGQEI 134

Query: 1536 LASYNDEDIYLFNSSHSDGAQYIKRYKGHRNNATVKGV 1649
            L SY+ + IYLF+    D A+ +K          VK +
Sbjct: 135  LVSYSSDYIYLFDPK-DDTARELKTPSAEERREEVKSL 171


>ref|XP_003353752.1| PREDICTED: WD repeat-containing protein 5 [Sus scrofa].
          Length = 334

 Score = 69.7 bits (169), Expect = 6e-12
 Identities = 76/333 (22%), Positives = 142/333 (42%), Gaps = 10/333 (3%)
 Frame = +3

Query: 876  FRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDLKVVVWDWVRRQPVLDFE---SGHKSNV 1046
            + L+  L GHT  V+++ F+  G WLAS S D  + +W     +    FE   SGHK  +
Sbjct: 35   YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK----FEKTISGHKLGI 90

Query: 1047 FQAKFLPNSGDSTLAMCARDGQ-VRVAELSATQCCKNTKRVAQHKGASHKLALEPDSPCT 1223
                +   S DS L + A D + +++ ++S+ +C K  K    H          P S   
Sbjct: 91   SDVAW---SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKG---HSNYVFCCNFNPQSNLI 144

Query: 1224 FLSAGEDAV----VFTIDLRQDRPASXXXXXXXXXXXXGLYTIYVNPANTHQFAVGGRDQ 1391
               + +++V    V T    +  PA             G   +               D 
Sbjct: 145  VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS-----------SSYDG 193

Query: 1392 FVRIYDQRKIDENENNGVLKKFCPHHLVNSESKANITCLVYSHDGTELLASYNDEDIYLF 1571
              RI+D                C   L++ ++   ++ + +S +G  +LA+  D  + L+
Sbjct: 194  LCRIWDTASGQ-----------CLKTLIDDDNPP-VSFVKFSPNGKYILAATLDNTLKLW 241

Query: 1572 NSSHSDGAQYIKRYKGHRNNATVKGVNFYGPKSEFVVSGSDCGHIFLWEKSSCQIIQFME 1751
            + S     + +K Y GH+N       NF     +++VSGS+   +++W   + +I+Q ++
Sbjct: 242  DYSKG---KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 298

Query: 1752 GDKGGVVNCLEPHPHLPVLATSGLDHD--VKIW 1844
            G    V++    HP   ++A++ L++D  +K+W
Sbjct: 299  GHTDVVIS-TACHPTENIIASAALENDKTIKLW 330


>ref|XP_003358840.1| PREDICTED: WD repeat-containing protein 5B-like [Sus scrofa].
          Length = 330

 Score = 65.5 bits (158), Expect = 1e-10
 Identities = 72/326 (22%), Positives = 138/326 (42%), Gaps = 3/326 (0%)
 Frame = +3

Query: 876  FRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDLKVVVWDWVRRQPVLDFESGHKSNVFQA 1055
            + L+  L GHT  V+++ F+  G WLAS S D  +++W     +    +E   K +  + 
Sbjct: 31   YTLKFTLVGHTEAVSSVKFSPNGEWLASSSADKVIIIWGAYDGK----YEKALKGHSLEI 86

Query: 1056 KFLPNSGDSTLAMCARDGQ-VRVAELSATQCCKNTKRVAQHKGASHKLALEPDSPCTFLS 1232
              +  S DS   + A D + +++ ++   +C K  K    H          P S    +S
Sbjct: 87   SDVAWSSDSGRLVSASDDKTLKIWDVRVGKCLKTLKG---HSNYVFCCNFNPPSNL-IIS 142

Query: 1233 AGEDAVVFTIDLRQDRPASXXXXXXXXXXXXGLYTIYVNPANTHQFAVGGRDQFVRIYDQ 1412
               D  V   +++  R                +  ++ N   +     G  D   RI+D 
Sbjct: 143  GSFDESVKIWEVKTGRCLKTLSAHSDP-----VSAVHFNCKGS-LIVSGSYDGVCRIWDA 196

Query: 1413 RKIDENENNGVLKKFCPHHLVNSESKANITCLVYSHDGTELLASYNDEDIYLFNSSHSDG 1592
                           C   LV+ ++   I+ + +S +G  +L +  D  + L++ S    
Sbjct: 197  ASGQ-----------CLKTLVDDDNPP-ISFVKFSPNGKYILIATLDNTLKLWDYSRG-- 242

Query: 1593 AQYIKRYKGHRNNATVKGVNFYGPKSEFVVSGSDCGHIFLWEKSSCQIIQFMEGDKGGVV 1772
             + +K Y GH+N       NF     +++VSGS+   +++W   + +I+Q ++G    V+
Sbjct: 243  -RCLKTYTGHKNEKYCIFANFSVTSGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVI 301

Query: 1773 NCLEPHPHLPVLATSGLDHD--VKIW 1844
            +    HP   ++A++ L +D  VK+W
Sbjct: 302  SA-ACHPTENIIASAALGNDKTVKLW 326


>ref|XP_003132297.1| PREDICTED: WD repeat-containing protein 82 [Sus scrofa].
          Length = 313

 Score = 62.4 bits (150), Expect = 1e-09
 Identities = 74/338 (21%), Positives = 131/338 (38%), Gaps = 7/338 (2%)
 Frame = +3

Query: 867  VQRFRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDLKVVVWDWVRRQPVLDFESGHKSNV 1046
            ++ FR+      ++  +N   F+  G  + S SDD  +V++D    +P     S  K  V
Sbjct: 8    LRSFRVAKVFRENSDKINCFDFSPNGETVISSSDDDSIVLYDCQEGKPKRTLYS-KKYGV 66

Query: 1047 FQAKFLPNSGDSTLAMCARDGQVRVAELSATQCCKNTKRVAQHKGASHKLALEPDSPC-- 1220
               ++   +     +    D  +R   L       + K +    G S ++     SP   
Sbjct: 67   DLIRYTHAANTVVYSSNKIDDTIRYLSLH------DNKYIRYFPGHSKRVVALSMSPVDD 120

Query: 1221 TFLSAGEDAVVFTIDLRQDRPASXXXXXXXXXXXXGLYTIYVNPANTHQ-----FAVGGR 1385
            TF+S   D  +   DLR                  GL  +   P  +       FA G  
Sbjct: 121  TFISGSLDKTIRLWDLRSPN-------------CQGLMHLQGKPVCSFDPEGLIFAAGVN 167

Query: 1386 DQFVRIYDQRKIDENENNGVLKKFCPHHLVNSESKANITCLVYSHDGTELLASYNDEDIY 1565
             + V++YD R  D+    G    F   +    +     T L +S+DG  +L S N   I 
Sbjct: 168  SEMVKLYDLRSFDK----GPFATFKMQY----DRTCEWTGLKFSNDGKLILISTNGSFIR 219

Query: 1566 LFNSSHSDGAQYIKRYKGHRNNATVKGVNFYGPKSEFVVSGSDCGHIFLWEKSSCQIIQF 1745
            L ++        +  + G+ N+  V     + P S+F++ GS+ G I +W   S   +  
Sbjct: 220  LIDAFKG---VVMHTFGGYANSKAVTLEASFTPDSQFIMIGSEDGKIHVWNGESGIKVAV 276

Query: 1746 MEGDKGGVVNCLEPHPHLPVLATSGLDHDVKIWAPTAE 1859
            ++G   G + CL+ +P     A++    ++  W PT +
Sbjct: 277  LDGKHTGPITCLQFNPKFMTFASA--CSNMAFWLPTID 312


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 55,995,402
Number of extensions: 1682159
Number of successful extensions: 7000
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 6902
Number of HSP's successfully gapped: 15
Length of query: 755
Length of database: 11,343,932
Length adjustment: 107
Effective length of query: 648
Effective length of database: 8,679,953
Effective search space: 5624609544
Effective search space used: 5624609544
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007192
         (2267 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_ChrX                                                         1126   0.0  
Sscrofa_Chr04                                                         769   0.0  

>Sscrofa_ChrX 
||          Length = 144288218

 Score = 1126 bits (568), Expect = 0.0
 Identities = 1105/1284 (86%)
 Strand = Plus / Plus

                                                                            
Query: 732      gccctggaggactgggtagcctcagagacatcagccctgccccgacctcgctggcaagcc 791
                ||||||||||| |||||  | ||||||||||| ||||| ||||  ||||||||||  | |
Sbjct: 25346105 gccctggaggaatgggtgtcttcagagacatctgccctaccccttcctcgctggcgggtc 25346164

                                                                            
Query: 792      cttcctgctcttcgggagcgggagctgggttcaagtgcccgttttgtgtatgaggcttgt 851
                |||  |||||| || || ||| ||||||||||||||||||| |||||||||||||| || 
Sbjct: 25346165 cttaatgctctgcgagaacggcagctgggttcaagtgcccgctttgtgtatgaggcctgc 25346224

                                                                            
Query: 852      ggggcaagagtctttgtgcagcgtttccgtctgcagcatgggcttgagggccatactggt 911
                |||||||||||||||||||||| |||||   ||||| |||||||||||||||| | ||||
Sbjct: 25346225 ggggcaagagtctttgtgcagcatttccagttgcagtatgggcttgagggccacaatggt 25346284

                                                                            
Query: 912      tgtgttaataccctgcactttaaccagcgcggcacctggctggccagtggcagcgatgac 971
                ||||| ||||| ||||||||||||||||| ||||||||||||||||   |||| ||||| 
Sbjct: 25346285 tgtgtcaatactctgcactttaaccagcgtggcacctggctggccacaagcagtgatgat 25346344

                                                                            
Query: 972      ctgaaagtggtggtttgggactgggtgcggcgacagccagtattggactttgagagtggc 1031
                || |||||  |  | |||||||||||||| |  ||||||||| ||| |||||||||||||
Sbjct: 25346345 cttaaagtaatattgtgggactgggtgcgtcagcagccagtactggtctttgagagtggc 25346404

                                                                            
Query: 1032     cacaaaagcaatgtcttccaggccaagttccttcctaacagtggtgattctaccctggcc 1091
                |||| ||  ||||| || ||||||||||||||||| ||| |||||||| | ||| |||||
Sbjct: 25346405 cacagaaataatgtttttcaggccaagttccttcccaactgtggtgatcccaccatggcc 25346464

                                                                            
Query: 1092     atgtgtgcccgtgatgggcaggttcgggtagcagagttgtctgctacacagtgctgcaag 1151
                ||||||||||||||||||||||| || ||||||||||||||||||| ||    |||||||
Sbjct: 25346465 atgtgtgcccgtgatgggcaggtacgcgtagcagagttgtctgctataccacactgcaag 25346524

                                                                            
Query: 1152     aatacgaagcgtgtggcacagcacaagggagcatcccacaaattggccctggaaccagac 1211
                || || ||||| ||||| ||||||| ||||||  ||||||| || || ||||| || |||
Sbjct: 25346525 aacaccaagcgggtggcccagcacaggggagccgcccacaagttagctctggagcctgac 25346584

                                                                            
Query: 1212     tctccctgtacgttcctgtctgcaggtgaagatgcagttgtctttaccattgaccttaga 1271
                || || | || ||||||  || |||| |||||||||||||||||| ||||||||||||||
Sbjct: 25346585 tccccttttaagttcctaacttcaggggaagatgcagttgtctttgccattgaccttaga 25346644

                                                                            
Query: 1272     caagaccggccagcttcgaaattggtggtgacaaaagaaaaggagaagaaagtggggctg 1331
                |||| |||||| ||||| | | ||||||| |||||||| ||||||||||||||||| |||
Sbjct: 25346645 caaggccggccggcttcaagagtggtggtaacaaaagataaggagaagaaagtgggactg 25346704

                                                                            
Query: 1332     tatacaatctatgtgaatcccgccaatacacatcagtttgcagtgggtggacgagatcag 1391
                |||||| ||| ||||||||| ||| ||||  | || ||||||||||||||||||||||||
Sbjct: 25346705 tatacagtctgtgtgaatcctgccgatacttaccaatttgcagtgggtggacgagatcag 25346764

                                                                            
Query: 1392     tttgtaaggatttatgaccagaggaaaattgatgagaatgaaaacaatggagtactcaag 1451
                ||||| || |||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct: 25346765 tttgtcagaatttatgaccagaggaaaattgatgagaatgagaataatggagtactcaag 25346824

                                                                            
Query: 1452     aaattctgtcctcatcacctggtgaacagtgagtccaaagcaaacatcacctgtcttgtg 1511
                ||||| ||||||||||||||||| | | |||| || | ||| ||||||||  | ||||||
Sbjct: 25346825 aaattttgtcctcatcacctggtcagctgtgattctacagctaacatcactggccttgtg 25346884

                                                                            
Query: 1512     tacagccacgacggcacagagctcctggccagttacaacgatgaagacatttacctcttc 1571
                ||||| ||||| ||||||||||||||||| |||||||| |||||||| ||||||||||||
Sbjct: 25346885 tacagtcacgatggcacagagctcctggctagttacaatgatgaagatatttacctcttc 25346944

                                                                            
Query: 1572     aactcctctcacagtgatggggcccagtatattaaaagatacaagggccacagaaataac 1631
                ||||| |||||| ||||||| ||||||||| |||||||||||||||| ||||| ||||| 
Sbjct: 25346945 aactcttctcactgtgatggtgcccagtatgttaaaagatacaagggacacaggaataat 25347004

                                                                            
Query: 1632     gccacagtaaaaggcgtcaatttctatggccccaagagtgagtttgtggtgagcggtagt 1691
                |||||||| ||||| |||||||||||||||||||  ||||||||||| ||||||||||||
Sbjct: 25347005 gccacagtcaaaggtgtcaatttctatggccccagaagtgagtttgtcgtgagcggtagt 25347064

                                                                            
Query: 1692     gactgcgggcacatcttcctctgggagaaatcatcctgccagatcattcagttcatggag 1751
                || || ||||||||||| ||||||||||||||||||||||||||  ||||||||||||||
Sbjct: 25347065 gattgtgggcacatctttctctgggagaaatcatcctgccagattgttcagttcatggag 25347124

                                                                            
Query: 1752     ggggacaagggaggcgtggtaaattgtcttgagccccatcctcacctgcctgtgctggca 1811
                || || || |||||    ||||| |||||||||||||||||| |||| |||||| |||| 
Sbjct: 25347125 ggagataaaggagggactgtaaactgtcttgagccccatccttacctacctgtgatggcg 25347184

                                                                            
Query: 1812     accagtggcctagaccatgatgtcaagatctgggcacccacagccgaaacttccactgag 1871
                |||||||| |||||||||||||  ||||||||||||||||||||  ||||  ||||||  
Sbjct: 25347185 accagtggtctagaccatgatgctaagatctgggcacccacagctaaaacgaccactggc 25347244

                                                                            
Query: 1872     cttacagggttaaaggatgtgattaagaagaacaagcgggaacgggatgaagatagctta 1931
                ||||  || |||||| ||||||||||||||||||||| |||||| |||||||||||| | 
Sbjct: 25347245 cttattggcttaaagaatgtgattaagaagaacaagcaggaacgagatgaagatagcctg 25347304

                                                                            
Query: 1932     caccacactgacttatttgatagccacatgctctggttcctcatgcatcacctgagacag 1991
                ||||||| |||| | || || || ||||||||  |||||||||||||||| |||| ||||
Sbjct: 25347305 caccacattgacctgttcgacagtcacatgcttaggttcctcatgcatcatctgacacag 25347364

                                        
Query: 1992     agacgccatcaccggcgctggcga 2015
                ||| ||||||||| || |||||||
Sbjct: 25347365 agaggccatcaccagcactggcga 25347388


>Sscrofa_Chr04 
||          Length = 143465943

 Score =  769 bits (388), Expect = 0.0
 Identities = 388/388 (100%)
 Strand = Plus / Plus

                                                                            
Query: 666      catcctcgtcgccgtgtacagcgcaagcgggccaatcgtgatcaggactcatccgacgat 725
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98125404 catcctcgtcgccgtgtacagcgcaagcgggccaatcgtgatcaggactcatccgacgat 98125463

                                                                            
Query: 726      gagcgagccctggaggactgggtagcctcagagacatcagccctgccccgacctcgctgg 785
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98125464 gagcgagccctggaggactgggtagcctcagagacatcagccctgccccgacctcgctgg 98125523

                                                                            
Query: 786      caagcccttcctgctcttcgggagcgggagctgggttcaagtgcccgttttgtgtatgag 845
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98125524 caagcccttcctgctcttcgggagcgggagctgggttcaagtgcccgttttgtgtatgag 98125583

                                                                            
Query: 846      gcttgtggggcaagagtctttgtgcagcgtttccgtctgcagcatgggcttgagggccat 905
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98125584 gcttgtggggcaagagtctttgtgcagcgtttccgtctgcagcatgggcttgagggccat 98125643

                                                                            
Query: 906      actggttgtgttaataccctgcactttaaccagcgcggcacctggctggccagtggcagc 965
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98125644 actggttgtgttaataccctgcactttaaccagcgcggcacctggctggccagtggcagc 98125703

                                                                            
Query: 966      gatgacctgaaagtggtggtttgggactgggtgcggcgacagccagtattggactttgag 1025
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98125704 gatgacctgaaagtggtggtttgggactgggtgcggcgacagccagtattggactttgag 98125763

                                            
Query: 1026     agtggccacaaaagcaatgtcttccagg 1053
                ||||||||||||||||||||||||||||
Sbjct: 98125764 agtggccacaaaagcaatgtcttccagg 98125791



 Score =  494 bits (249), Expect = e-136
 Identities = 249/249 (100%)
 Strand = Plus / Plus

                                                                            
Query: 381      ggaagcctgtctagcagtccagaggagatgtctggtgctgaggaagggagagagacatcc 440
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98125119 ggaagcctgtctagcagtccagaggagatgtctggtgctgaggaagggagagagacatcc 98125178

                                                                            
Query: 441      tcaggcattgaagtggaggcctcagacctgagcttgagcttgactggggatgatggtggc 500
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98125179 tcaggcattgaagtggaggcctcagacctgagcttgagcttgactggggatgatggtggc 98125238

                                                                            
Query: 501      cccaatcgcaccagcacagaaagtcgaggcacggatacagagagctcaggtgaagacaag 560
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98125239 cccaatcgcaccagcacagaaagtcgaggcacggatacagagagctcaggtgaagacaag 98125298

                                                                            
Query: 561      gactctgacagcatggaggacactggccattactccatcaatgatgaaaaccaagtccat 620
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98125299 gactctgacagcatggaggacactggccattactccatcaatgatgaaaaccaagtccat 98125358

                         
Query: 621      gacccctca 629
                |||||||||
Sbjct: 98125359 gacccctca 98125367



 Score =  474 bits (239), Expect = e-130
 Identities = 239/239 (100%)
 Strand = Plus / Plus

                                                                            
Query: 2006     gcgctggcgagaacctggggttggggccacagacgcagattcggatgagtctcccagctc 2065
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98150688 gcgctggcgagaacctggggttggggccacagacgcagattcggatgagtctcccagctc 98150747

                                                                            
Query: 2066     ctcagacacatcggacgaggaggagggccccgaccgggtgcagtgtatgccatcctgagg 2125
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98150748 ctcagacacatcggacgaggaggagggccccgaccgggtgcagtgtatgccatcctgagg 98150807

                                                                            
Query: 2126     cctcgtacccaggaggggcaggccagggctgccaacctgatcctgcctgggcagcccttt 2185
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98150808 cctcgtacccaggaggggcaggccagggctgccaacctgatcctgcctgggcagcccttt 98150867

                                                                           
Query: 2186     cctgtcccaggcccttacattcagcagaaacgcactttggacatttttgctttagattt 2244
                |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98150868 cctgtcccaggcccttacattcagcagaaacgcactttggacatttttgctttagattt 98150926



 Score =  474 bits (239), Expect = e-130
 Identities = 239/239 (100%)
 Strand = Plus / Plus

                                                                            
Query: 2006     gcgctggcgagaacctggggttggggccacagacgcagattcggatgagtctcccagctc 2065
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98202688 gcgctggcgagaacctggggttggggccacagacgcagattcggatgagtctcccagctc 98202747

                                                                            
Query: 2066     ctcagacacatcggacgaggaggagggccccgaccgggtgcagtgtatgccatcctgagg 2125
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98202748 ctcagacacatcggacgaggaggagggccccgaccgggtgcagtgtatgccatcctgagg 98202807

                                                                            
Query: 2126     cctcgtacccaggaggggcaggccagggctgccaacctgatcctgcctgggcagcccttt 2185
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98202808 cctcgtacccaggaggggcaggccagggctgccaacctgatcctgcctgggcagcccttt 98202867

                                                                           
Query: 2186     cctgtcccaggcccttacattcagcagaaacgcactttggacatttttgctttagattt 2244
                |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98202868 cctgtcccaggcccttacattcagcagaaacgcactttggacatttttgctttagattt 98202926



 Score =  331 bits (167), Expect = 1e-87
 Identities = 167/167 (100%)
 Strand = Plus / Plus

                                                                            
Query: 1        ggcggccgctggccagtgtaagatggcggcggcgttggtggcggcagtggacggggcggc 60
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98104451 ggcggccgctggccagtgtaagatggcggcggcgttggtggcggcagtggacggggcggc 98104510

                                                                            
Query: 61       tgggcctggaacagtcggagcagccgctggcagaaggatgacccaagacgggaagcgggc 120
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98104511 tgggcctggaacagtcggagcagccgctggcagaaggatgacccaagacgggaagcgggc 98104570

                                                               
Query: 121      tgcagagtctcgccggctcccgtgcttgtaactgccccagccggaca 167
                |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98104571 tgcagagtctcgccggctcccgtgcttgtaactgccccagccggaca 98104617



 Score =  287 bits (145), Expect = 1e-74
 Identities = 145/145 (100%)
 Strand = Plus / Plus

                                                                            
Query: 1049     ccaggccaagttccttcctaacagtggtgattctaccctggccatgtgtgcccgtgatgg 1108
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98126958 ccaggccaagttccttcctaacagtggtgattctaccctggccatgtgtgcccgtgatgg 98127017

                                                                            
Query: 1109     gcaggttcgggtagcagagttgtctgctacacagtgctgcaagaatacgaagcgtgtggc 1168
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98127018 gcaggttcgggtagcagagttgtctgctacacagtgctgcaagaatacgaagcgtgtggc 98127077

                                         
Query: 1169     acagcacaagggagcatcccacaaa 1193
                |||||||||||||||||||||||||
Sbjct: 98127078 acagcacaagggagcatcccacaaa 98127102



 Score =  268 bits (135), Expect = 1e-68
 Identities = 135/135 (100%)
 Strand = Plus / Plus

                                                                            
Query: 1637     agtaaaaggcgtcaatttctatggccccaagagtgagtttgtggtgagcggtagtgactg 1696
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98145109 agtaaaaggcgtcaatttctatggccccaagagtgagtttgtggtgagcggtagtgactg 98145168

                                                                            
Query: 1697     cgggcacatcttcctctgggagaaatcatcctgccagatcattcagttcatggaggggga 1756
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98145169 cgggcacatcttcctctgggagaaatcatcctgccagatcattcagttcatggaggggga 98145228

                               
Query: 1757     caagggaggcgtggt 1771
                |||||||||||||||
Sbjct: 98145229 caagggaggcgtggt 98145243



 Score =  244 bits (123), Expect = 2e-61
 Identities = 123/123 (100%)
 Strand = Plus / Plus

                                                                            
Query: 1769     ggtaaattgtcttgagccccatcctcacctgcctgtgctggcaaccagtggcctagacca 1828
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98148988 ggtaaattgtcttgagccccatcctcacctgcctgtgctggcaaccagtggcctagacca 98149047

                                                                            
Query: 1829     tgatgtcaagatctgggcacccacagccgaaacttccactgagcttacagggttaaagga 1888
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98149048 tgatgtcaagatctgggcacccacagccgaaacttccactgagcttacagggttaaagga 98149107

                   
Query: 1889     tgt 1891
                |||
Sbjct: 98149108 tgt 98149110



 Score =  240 bits (121), Expect = 3e-60
 Identities = 121/121 (100%)
 Strand = Plus / Plus

                                                                            
Query: 262      aggttgtttcctaattgtttcattttcttcatctcctgaatccaggctggctacagtaaa 321
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98120610 aggttgtttcctaattgtttcattttcttcatctcctgaatccaggctggctacagtaaa 98120669

                                                                            
Query: 322      catcattcaagatgtccagcaaagggagcagcacagatggcaaaacagacttagctaatg 381
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98120670 catcattcaagatgtccagcaaagggagcagcacagatggcaaaacagacttagctaatg 98120729

                 
Query: 382      g 382
                |
Sbjct: 98120730 g 98120730



 Score =  232 bits (117), Expect = 7e-58
 Identities = 117/117 (100%)
 Strand = Plus / Plus

                                                                            
Query: 1890     gtgattaagaagaacaagcgggaacgggatgaagatagcttacaccacactgacttattt 1949
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98149742 gtgattaagaagaacaagcgggaacgggatgaagatagcttacaccacactgacttattt 98149801

                                                                         
Query: 1950     gatagccacatgctctggttcctcatgcatcacctgagacagagacgccatcaccgg 2006
                |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98149802 gatagccacatgctctggttcctcatgcatcacctgagacagagacgccatcaccgg 98149858



 Score =  232 bits (117), Expect = 7e-58
 Identities = 117/117 (100%)
 Strand = Plus / Plus

                                                                            
Query: 1890     gtgattaagaagaacaagcgggaacgggatgaagatagcttacaccacactgacttattt 1949
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98201742 gtgattaagaagaacaagcgggaacgggatgaagatagcttacaccacactgacttattt 98201801

                                                                         
Query: 1950     gatagccacatgctctggttcctcatgcatcacctgagacagagacgccatcaccgg 2006
                |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98201802 gatagccacatgctctggttcctcatgcatcacctgagacagagacgccatcaccgg 98201858



 Score =  222 bits (112), Expect = 7e-55
 Identities = 112/112 (100%)
 Strand = Plus / Plus

                                                                            
Query: 1289     gaaattggtggtgacaaaagaaaaggagaagaaagtggggctgtatacaatctatgtgaa 1348
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98134107 gaaattggtggtgacaaaagaaaaggagaagaaagtggggctgtatacaatctatgtgaa 98134166

                                                                    
Query: 1349     tcccgccaatacacatcagtttgcagtgggtggacgagatcagtttgtaagg 1400
                ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98134167 tcccgccaatacacatcagtttgcagtgggtggacgagatcagtttgtaagg 98134218



 Score =  220 bits (111), Expect = 3e-54
 Identities = 111/111 (100%)
 Strand = Plus / Plus

                                                                            
Query: 1528     cagagctcctggccagttacaacgatgaagacatttacctcttcaactcctctcacagtg 1587
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98143090 cagagctcctggccagttacaacgatgaagacatttacctcttcaactcctctcacagtg 98143149

                                                                   
Query: 1588     atggggcccagtatattaaaagatacaagggccacagaaataacgccacag 1638
                |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98143150 atggggcccagtatattaaaagatacaagggccacagaaataacgccacag 98143200



 Score =  190 bits (96), Expect = 2e-45
 Identities = 96/96 (100%)
 Strand = Plus / Plus

                                                                            
Query: 1194     ttggccctggaaccagactctccctgtacgttcctgtctgcaggtgaagatgcagttgtc 1253
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98128291 ttggccctggaaccagactctccctgtacgttcctgtctgcaggtgaagatgcagttgtc 98128350

                                                    
Query: 1254     tttaccattgaccttagacaagaccggccagcttcg 1289
                ||||||||||||||||||||||||||||||||||||
Sbjct: 98128351 tttaccattgaccttagacaagaccggccagcttcg 98128386



 Score =  153 bits (77), Expect = 5e-34
 Identities = 77/77 (100%)
 Strand = Plus / Plus

                                                                            
Query: 1398     aggatttatgaccagaggaaaattgatgagaatgaaaacaatggagtactcaagaaattc 1457
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98141973 aggatttatgaccagaggaaaattgatgagaatgaaaacaatggagtactcaagaaattc 98142032

                                 
Query: 1458     tgtcctcatcacctggt 1474
                |||||||||||||||||
Sbjct: 98142033 tgtcctcatcacctggt 98142049



 Score =  151 bits (76), Expect = 2e-33
 Identities = 76/76 (100%)
 Strand = Plus / Plus

                                                                            
Query: 190      gtccttcagtgaatctacaggcctattttctcaggagctcagcctggccctacttcagtg 249
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98105500 gtccttcagtgaatctacaggcctattttctcaggagctcagcctggccctacttcagtg 98105559

                                
Query: 250      ataaaggaggaaaggt 265
                ||||||||||||||||
Sbjct: 98105560 ataaaggaggaaaggt 98105575



 Score =  117 bits (59), Expect = 3e-23
 Identities = 59/59 (100%)
 Strand = Plus / Plus

                                                                           
Query: 1472     ggtgaacagtgagtccaaagcaaacatcacctgtcttgtgtacagccacgacggcacag 1530
                |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98142523 ggtgaacagtgagtccaaagcaaacatcacctgtcttgtgtacagccacgacggcacag 98142581


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 64,106,957
Number of extensions: 457
Number of successful extensions: 457
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 454
Number of HSP's successfully gapped: 18
Length of query: 2267
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 2245
Effective length of database: 2,808,408,574
Effective search space: 6304877248630
Effective search space used: 6304877248630
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)