Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007207
(1059 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_776857.1| thioredoxin-dependent peroxide reductase, mitoc... 456 e-128
Alignment gi|NP_777188.1| peroxiredoxin-2 [Bos taurus]. 280 1e-75
Alignment gi|NP_776858.1| peroxiredoxin-4 [Bos taurus]. 274 8e-74
Alignment gi|NP_776856.1| peroxiredoxin-1 [Bos taurus]. 262 3e-70
Alignment gi|NP_777068.1| peroxiredoxin-6 [Bos taurus]. 65 1e-10
Alignment gi|XP_002707788.1| PREDICTED: peroxiredoxin-6-like [Bos taurus]. 59 6e-09
Alignment gi|XP_001252820.1| PREDICTED: peroxiredoxin-6-like isoform 1 [B... 59 7e-09
>ref|NP_776857.1| thioredoxin-dependent peroxide reductase, mitochondrial precursor
[Bos taurus].
Length = 257
Score = 456 bits (1173), Expect = e-128
Identities = 220/251 (87%), Positives = 232/251 (92%)
Frame = +1
Query: 85 RLLRASVIRHVSAVPWGIXXXXXXXXXXXXXTCLTSVLWSGSSQAKFAFSTSSSHHSPAV 264
RL RAS+IRHVSA+PWGI CLT+ LWSGS QAKFAFSTSSS+H+PAV
Sbjct: 7 RLFRASLIRHVSAIPWGISASAALRPAASRRMCLTNALWSGSDQAKFAFSTSSSYHAPAV 66
Query: 265 TQHAPYFKGTAVVNGEFKELSLDDYKGKYLVLFFYPLDFTFVCPTEIIAFSDKANEFHDV 444
TQHAPYFKGTAVV+GEFKE+SLDD+KGKYLVLFFYPLDFTFVCPTEIIAFSDKA+EFHDV
Sbjct: 67 TQHAPYFKGTAVVSGEFKEISLDDFKGKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDV 126
Query: 445 NCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISRDYGVLLEGPGLALRG 624
NCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISRDYGVLLEGPGLALRG
Sbjct: 127 NCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISRDYGVLLEGPGLALRG 186
Query: 625 LFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQFVETHGEVCPANWTPDSPTIKPHPT 804
LFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQFVE HGEVCPANWTP+SPTIKPHPT
Sbjct: 187 LFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQFVEAHGEVCPANWTPESPTIKPHPT 246
Query: 805 DSKEYFEKVHQ 837
S+EYFEKV+Q
Sbjct: 247 ASREYFEKVNQ 257
>ref|NP_777188.1| peroxiredoxin-2 [Bos taurus].
Length = 199
Score = 280 bits (717), Expect = 1e-75
Identities = 130/189 (68%), Positives = 158/189 (83%)
Frame = +1
Query: 262 VTQHAPYFKGTAVVNGEFKELSLDDYKGKYLVLFFYPLDFTFVCPTEIIAFSDKANEFHD 441
V + AP F+ TAVV+G FKE+ L DYKGKY+VLFFYPLDFTFVCPTEI+AFSD+A EFH
Sbjct: 9 VGKPAPEFQATAVVDGAFKEVKLSDYKGKYVVLFFYPLDFTFVCPTEIVAFSDRAAEFHK 68
Query: 442 VNCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISRDYGVLLEGPGLALR 621
+NCEV+ VSVDS F+HLAWINTPRK GGLG +NI LL+D+T+++S DYGVL E G+A R
Sbjct: 69 LNCEVLGVSVDSQFTHLAWINTPRKEGGLGPLNIPLLADVTRKLSSDYGVLKEDEGIAYR 128
Query: 622 GLFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQFVETHGEVCPANWTPDSPTIKPHP 801
GLF+ID GV++ +++NDLPVGRSV+E LRLV+AFQ+ + HGEVCPA WTP S TIKP+
Sbjct: 129 GLFVIDGKGVLRQVTINDLPVGRSVDEALRLVQAFQYTDEHGEVCPAGWTPGSDTIKPNV 188
Query: 802 TDSKEYFEK 828
DSKEYF K
Sbjct: 189 DDSKEYFSK 197
>ref|NP_776858.1| peroxiredoxin-4 [Bos taurus].
Length = 274
Score = 274 bits (701), Expect = 8e-74
Identities = 130/207 (62%), Positives = 163/207 (78%), Gaps = 1/207 (0%)
Frame = +1
Query: 217 AKFAFSTSSSHHSPA-VTQHAPYFKGTAVVNGEFKELSLDDYKGKYLVLFFYPLDFTFVC 393
++ + + S H S A +++ APY++GTAV+NGEFKEL L DY+GKYLV FFYPLDFTFVC
Sbjct: 68 SRVSVAEHSLHLSKAKISKPAPYWEGTAVINGEFKELKLTDYRGKYLVFFFYPLDFTFVC 127
Query: 394 PTEIIAFSDKANEFHDVNCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQI 573
PTEIIAF D+ +EF +N EVVA SVDS F+HLAWINTPR+ GGLG +NI LL+DL QI
Sbjct: 128 PTEIIAFGDRIDEFRSINTEVVACSVDSQFTHLAWINTPRRQGGLGSINIPLLADLNHQI 187
Query: 574 SRDYGVLLEGPGLALRGLFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQFVETHGEV 753
S+DYGV LE G LRGLFIID G+++ +++NDLPVGRSV+ETLRLV+AFQ+ + HGEV
Sbjct: 188 SKDYGVYLEDSGHTLRGLFIIDDKGILRQITLNDLPVGRSVDETLRLVQAFQYTDKHGEV 247
Query: 754 CPANWTPDSPTIKPHPTDSKEYFEKVH 834
CPA W P S TI P P +YF+K++
Sbjct: 248 CPAGWKPGSETIIPDPAGKLKYFDKLN 274
>ref|NP_776856.1| peroxiredoxin-1 [Bos taurus].
Length = 199
Score = 262 bits (670), Expect = 3e-70
Identities = 123/190 (64%), Positives = 150/190 (78%), Gaps = 1/190 (0%)
Frame = +1
Query: 262 VTQHAPYFKGTAVV-NGEFKELSLDDYKGKYLVLFFYPLDFTFVCPTEIIAFSDKANEFH 438
+ AP FK TAV+ +G+FK++SL DYKGKY+V FFYPLDFTFVCPTEIIAFSD+A EF
Sbjct: 8 IGHRAPQFKATAVMPDGQFKDISLADYKGKYVVFFFYPLDFTFVCPTEIIAFSDRAEEFK 67
Query: 439 DVNCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISRDYGVLLEGPGLAL 618
+NC+V+ SVDSHF HLAWINTP+K GGLG MNI L+S + I++DYGVL G++
Sbjct: 68 KLNCQVIGASVDSHFCHLAWINTPKKQGGLGPMNIPLISAPKRTIAQDYGVLKADEGISF 127
Query: 619 RGLFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQFVETHGEVCPANWTPDSPTIKPH 798
RGLFIID G+++ +++NDLPVGRSV+ETLRLV+AFQF + HGEVCPA W P S TIKP
Sbjct: 128 RGLFIIDDKGILRQITINDLPVGRSVDETLRLVQAFQFTDKHGEVCPAGWKPGSDTIKPD 187
Query: 799 PTDSKEYFEK 828
SKEYF K
Sbjct: 188 VQKSKEYFSK 197
>ref|NP_777068.1| peroxiredoxin-6 [Bos taurus].
Length = 224
Score = 64.7 bits (156), Expect = 1e-10
Identities = 53/198 (26%), Positives = 89/198 (44%), Gaps = 13/198 (6%)
Frame = +1
Query: 274 APYFKGTAVVNGEFKELSLDDYKG-KYLVLFFYPLDFTFVCPTEIIAFSDKANEFHDVNC 450
AP F+ + + DY G + +LF +P DFT VC TE+ + A EF N
Sbjct: 11 APNFEANTTIG----RIRFHDYLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAKRNV 66
Query: 451 EVVAVSVDSHFSHLAW---INTPRKNGGLGHMNIALLSDLTKQISRDYGVL------LEG 603
+++A+S+DS HLAW IN + ++ D + ++ G+L +G
Sbjct: 67 KMIALSIDSVEDHLAWSKDINAYNGEEPTEKLPFPIIDDKNRDLAIQLGMLDPAEKDEKG 126
Query: 604 PGLALRGLFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQFVETHGEVCPANW-TPDS 780
+ R +FI P+ +K + GR+ +E LR++ + Q P +W DS
Sbjct: 127 MPVTARVVFIFGPDKKLKLSILYPATTGRNFDEILRVIISLQLTAEKRVATPVDWKNGDS 186
Query: 781 PTIKP--HPTDSKEYFEK 828
+ P ++K+ F K
Sbjct: 187 VMVLPTIPEEEAKKLFPK 204
>ref|XP_002707788.1| PREDICTED: peroxiredoxin-6-like [Bos taurus].
Length = 224
Score = 59.3 bits (142), Expect = 6e-09
Identities = 52/198 (26%), Positives = 86/198 (43%), Gaps = 13/198 (6%)
Frame = +1
Query: 274 APYFKGTAVVNGEFKELSLDDYKG-KYLVLFFYPLDFTFVCPTEIIAFSDKANEFHDVNC 450
AP F+ + + DY G + +L +P DFT VC TE+ + A EF N
Sbjct: 11 APNFEANTPIG----RIRFHDYLGDSWGILSSHPRDFTTVCTTELGRAAKLAPEFAKRNV 66
Query: 451 EVVAVSVDSHFSHLAW---INTPRKNGGLGHMNIALLSDLTKQISRDYGVL------LEG 603
++A+S+DS HLAW IN G + ++ D + ++ G+L +
Sbjct: 67 MMIALSIDSVEDHLAWSKDINAYNGEGPTEKLPFPIIDDKNRDLAIQLGMLDPAEKDKKD 126
Query: 604 PGLALRGLFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQFVETHGEVCPANW-TPDS 780
R +FI P+ +K + GR+ +E LR++ + Q P +W DS
Sbjct: 127 MPETSRVVFIFGPDKKLKLSILYPATTGRNFDEILRVIISLQLTAEKRVATPVDWKNGDS 186
Query: 781 PTIKP--HPTDSKEYFEK 828
+ P ++K+ F K
Sbjct: 187 VMVLPTVPEEEAKKLFPK 204
>ref|XP_001252820.1| PREDICTED: peroxiredoxin-6-like isoform 1 [Bos taurus].
Length = 224
Score = 58.9 bits (141), Expect = 7e-09
Identities = 52/198 (26%), Positives = 86/198 (43%), Gaps = 13/198 (6%)
Frame = +1
Query: 274 APYFKGTAVVNGEFKELSLDDYKG-KYLVLFFYPLDFTFVCPTEIIAFSDKANEFHDVNC 450
AP F+ + + DY G + +L +P DFT VC TE+ + A EF N
Sbjct: 11 APNFEANTPIG----RIRFHDYLGDSWGILSSHPRDFTTVCTTELGRAAKLAPEFAKRNV 66
Query: 451 EVVAVSVDSHFSHLAW---INTPRKNGGLGHMNIALLSDLTKQISRDYGVL------LEG 603
++A+S+DS HLAW IN G + ++ D + ++ G+L +
Sbjct: 67 MMIALSIDSVEDHLAWSKDINAYNGEGPTEKLPFPIIDDKNRDLAIQLGMLDPAEKDKKD 126
Query: 604 PGLALRGLFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQFVETHGEVCPANW-TPDS 780
R +FI P+ +K + GR+ +E LR++ + Q P +W DS
Sbjct: 127 MPETSRVVFIFGPDKKLKLSILYPANTGRNFDEILRVIISLQLTAEKRVATPVDWKNGDS 186
Query: 781 PTIKP--HPTDSKEYFEK 828
+ P ++K+ F K
Sbjct: 187 VMVLPTVPEEEAKKLFPK 204
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 43,048,154
Number of extensions: 1254942
Number of successful extensions: 3656
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 3650
Number of HSP's successfully gapped: 7
Length of query: 353
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 250
Effective length of database: 14,273,310
Effective search space: 3568327500
Effective search space used: 3568327500
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007207
(1059 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_535031.2| PREDICTED: similar to Thioredoxin-dependent per... 459 e-129
Alignment gi|XP_853872.1| PREDICTED: similar to Thioredoxin-dependent per... 445 e-125
Alignment gi|XP_865127.1| PREDICTED: similar to Thioredoxin-dependent per... 437 e-123
Alignment gi|XP_850180.1| PREDICTED: similar to Thioredoxin-dependent per... 422 e-118
Alignment gi|XP_548896.2| PREDICTED: similar to Peroxiredoxin 4 (Prx-IV) ... 278 8e-75
Alignment gi|XP_859371.1| PREDICTED: similar to peroxiredoxin 4 isoform 3... 273 2e-73
Alignment gi|XP_867426.1| PREDICTED: similar to Peroxiredoxin 2 (Thioredo... 270 2e-72
Alignment gi|XP_542042.2| PREDICTED: similar to Peroxiredoxin 2 (Thioredo... 270 2e-72
Alignment gi|XP_532599.2| PREDICTED: similar to peroxiredoxin 1 [Canis fa... 266 2e-71
Alignment gi|XP_532386.1| PREDICTED: similar to peroxiredoxin 1 isoform 1... 251 8e-67
>ref|XP_535031.2| PREDICTED: similar to Thioredoxin-dependent peroxide reductase,
mitochondrial precursor (Peroxiredoxin 3) (Antioxidant
protein 1) (AOP-1) (MER5 protein homolog) (HBC189) (PRX
III) isoform 1 [Canis familiaris].
Length = 257
Score = 459 bits (1180), Expect = e-129
Identities = 219/251 (87%), Positives = 233/251 (92%)
Frame = +1
Query: 85 RLLRASVIRHVSAVPWGIXXXXXXXXXXXXXTCLTSVLWSGSSQAKFAFSTSSSHHSPAV 264
R LRAS+ RHVSA+PWGI TCLT+VLWSGS QAKFAFSTSSS+H+PAV
Sbjct: 7 RFLRASIARHVSAIPWGISASAALRPAASRRTCLTNVLWSGSGQAKFAFSTSSSYHAPAV 66
Query: 265 TQHAPYFKGTAVVNGEFKELSLDDYKGKYLVLFFYPLDFTFVCPTEIIAFSDKANEFHDV 444
TQHAPYFKGTAVVNGEFK+L+LDD+KG+YLVLFFYPLDFTFVCPTEI+AFSDKA EFHDV
Sbjct: 67 TQHAPYFKGTAVVNGEFKDLTLDDFKGRYLVLFFYPLDFTFVCPTEIVAFSDKAKEFHDV 126
Query: 445 NCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISRDYGVLLEGPGLALRG 624
NC+VVAVSVDSHF+HLAWINTPRKNGGLGHMNIALLSDLTKQISRDYGVLLEGPG+ALRG
Sbjct: 127 NCDVVAVSVDSHFTHLAWINTPRKNGGLGHMNIALLSDLTKQISRDYGVLLEGPGIALRG 186
Query: 625 LFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQFVETHGEVCPANWTPDSPTIKPHPT 804
LFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQFVETHGEVCPANWTPDSPTIKPHPT
Sbjct: 187 LFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQFVETHGEVCPANWTPDSPTIKPHPT 246
Query: 805 DSKEYFEKVHQ 837
SKEYFEKV+Q
Sbjct: 247 ASKEYFEKVNQ 257
>ref|XP_853872.1| PREDICTED: similar to Thioredoxin-dependent peroxide reductase,
mitochondrial precursor (Peroxiredoxin 3) (Antioxidant
protein 1) (AOP-1) (MER5 protein homolog) (HBC189) (PRX
III) [Canis familiaris].
Length = 257
Score = 445 bits (1145), Expect = e-125
Identities = 213/251 (84%), Positives = 230/251 (91%)
Frame = +1
Query: 85 RLLRASVIRHVSAVPWGIXXXXXXXXXXXXXTCLTSVLWSGSSQAKFAFSTSSSHHSPAV 264
RLL AS+ RHVSA+PWGI TCLT+VLWSGSSQAKFAFSTSSS+H+PAV
Sbjct: 7 RLLWASIARHVSAIPWGISASAALRPAASRRTCLTNVLWSGSSQAKFAFSTSSSYHAPAV 66
Query: 265 TQHAPYFKGTAVVNGEFKELSLDDYKGKYLVLFFYPLDFTFVCPTEIIAFSDKANEFHDV 444
TQHAPYFKGTA+VNGEFK+L+LDD+KG+YLVLFFYPLDFTFVCPTEI+AFSDKA EFHDV
Sbjct: 67 TQHAPYFKGTAIVNGEFKDLTLDDFKGRYLVLFFYPLDFTFVCPTEIVAFSDKAKEFHDV 126
Query: 445 NCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISRDYGVLLEGPGLALRG 624
NC+VVAVSVDSHF+HLAWINTP+KNG LGHMNIALLSDLTKQI RDYG+LLEGPG+ALRG
Sbjct: 127 NCDVVAVSVDSHFTHLAWINTPQKNGSLGHMNIALLSDLTKQIPRDYGMLLEGPGIALRG 186
Query: 625 LFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQFVETHGEVCPANWTPDSPTIKPHPT 804
LFIIDPNGVIKHLSVNDLPVGRSVEETL LVKAFQFVETHGEVCPANWTPDSPTIKPH T
Sbjct: 187 LFIIDPNGVIKHLSVNDLPVGRSVEETLCLVKAFQFVETHGEVCPANWTPDSPTIKPHTT 246
Query: 805 DSKEYFEKVHQ 837
SKEYFEKV+Q
Sbjct: 247 ASKEYFEKVNQ 257
>ref|XP_865127.1| PREDICTED: similar to Thioredoxin-dependent peroxide reductase,
mitochondrial precursor (Peroxiredoxin 3) (Antioxidant
protein 1) (AOP-1) (MER5 protein homolog) (HBC189) (PRX
III) isoform 2 [Canis familiaris].
Length = 260
Score = 437 bits (1124), Expect = e-123
Identities = 213/254 (83%), Positives = 226/254 (88%), Gaps = 3/254 (1%)
Frame = +1
Query: 85 RLLRASVIRHVSAVPWGIXXXXXXXXXXXXXTCLTSVLWSGSSQAKFAFSTSSSHHSPAV 264
R LRAS+ RHVSA+PWGI TCLT+VLWSGS QAKFAFSTSSS+H+PAV
Sbjct: 7 RFLRASIARHVSAIPWGISASAALRPAASRRTCLTNVLWSGSGQAKFAFSTSSSYHAPAV 66
Query: 265 TQHAPYFKGTAVVNGEFKELSLDDYKGKYLVLFFYPLDFTFVCPTEIIAFSDKANEFHDV 444
TQHAPYFKGTAVVNGEFK+L+LDD+KG+YLVLFFYPLDFTFVCPTEI+AFSDKA EFHDV
Sbjct: 67 TQHAPYFKGTAVVNGEFKDLTLDDFKGRYLVLFFYPLDFTFVCPTEIVAFSDKAKEFHDV 126
Query: 445 NCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISRDYGVLLEG---PGLA 615
NC+VVAVSVDSHF+HLAWINTPRKNGGLGHMNIALLSDLTKQISRDYGVL G G
Sbjct: 127 NCDVVAVSVDSHFTHLAWINTPRKNGGLGHMNIALLSDLTKQISRDYGVLSAGFVLQGSP 186
Query: 616 LRGLFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQFVETHGEVCPANWTPDSPTIKP 795
GLFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQFVETHGEVCPANWTPDSPTIKP
Sbjct: 187 SLGLFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQFVETHGEVCPANWTPDSPTIKP 246
Query: 796 HPTDSKEYFEKVHQ 837
HPT SKEYFEKV+Q
Sbjct: 247 HPTASKEYFEKVNQ 260
>ref|XP_850180.1| PREDICTED: similar to Thioredoxin-dependent peroxide reductase,
mitochondrial precursor (Peroxiredoxin 3) (Antioxidant
protein 1) (AOP-1) (MER5 protein homolog) (HBC189) (PRX
III) [Canis familiaris].
Length = 269
Score = 422 bits (1084), Expect = e-118
Identities = 203/251 (80%), Positives = 221/251 (88%)
Frame = +1
Query: 85 RLLRASVIRHVSAVPWGIXXXXXXXXXXXXXTCLTSVLWSGSSQAKFAFSTSSSHHSPAV 264
R L+AS+ HVSA+PWGI TCLT+VLWSGS QAKF FSTSSS+H+PAV
Sbjct: 19 RFLQASIAGHVSAIPWGISASAALRPAASRRTCLTNVLWSGSGQAKFTFSTSSSYHAPAV 78
Query: 265 TQHAPYFKGTAVVNGEFKELSLDDYKGKYLVLFFYPLDFTFVCPTEIIAFSDKANEFHDV 444
TQHAPYFKGTAVVN EFK+L+LDD+KG+YLVLFFYPL FTFVCPTEI+AFSDKA EFHDV
Sbjct: 79 TQHAPYFKGTAVVNREFKDLTLDDFKGRYLVLFFYPLHFTFVCPTEIVAFSDKAKEFHDV 138
Query: 445 NCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISRDYGVLLEGPGLALRG 624
NC+VVAVSVDSHF+HLAWIN +KNG LGHMNIALLSDLTKQISR+YGVLLEGPG+ALRG
Sbjct: 139 NCDVVAVSVDSHFTHLAWINALQKNGSLGHMNIALLSDLTKQISREYGVLLEGPGIALRG 198
Query: 625 LFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQFVETHGEVCPANWTPDSPTIKPHPT 804
LFI DPNGVIKHLSVNDLPVGRSVEETL LVKAF FVETHGEVCPANWTPDSP IKP P+
Sbjct: 199 LFITDPNGVIKHLSVNDLPVGRSVEETLCLVKAFHFVETHGEVCPANWTPDSPIIKPDPS 258
Query: 805 DSKEYFEKVHQ 837
SKEYFEKV+Q
Sbjct: 259 ASKEYFEKVNQ 269
>ref|XP_548896.2| PREDICTED: similar to Peroxiredoxin 4 (Prx-IV) (Thioredoxin
peroxidase AO372) (Thioredoxin-dependent peroxide
reductase A0372) (Antioxidant enzyme AOE372) (AOE37-2)
isoform 1 [Canis familiaris].
Length = 272
Score = 278 bits (710), Expect = 8e-75
Identities = 132/199 (66%), Positives = 159/199 (79%), Gaps = 1/199 (0%)
Frame = +1
Query: 241 SSHHSPA-VTQHAPYFKGTAVVNGEFKELSLDDYKGKYLVLFFYPLDFTFVCPTEIIAFS 417
S HHS A +++ APY++GTAV+NGEFKEL L DY+GKYLV FFYPLDFTFVCPTEIIAF
Sbjct: 74 SLHHSKAKISKPAPYWEGTAVINGEFKELKLTDYRGKYLVFFFYPLDFTFVCPTEIIAFG 133
Query: 418 DKANEFHDVNCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISRDYGVLL 597
D+ EF +N EVVA SVDS F+HLAWINTPR+ GGLG + I LLSDLT QIS+DYGV L
Sbjct: 134 DRIEEFKSINTEVVACSVDSQFTHLAWINTPRRQGGLGPIKIPLLSDLTHQISKDYGVYL 193
Query: 598 EGPGLALRGLFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQFVETHGEVCPANWTPD 777
E G LRGLFIID G+++ +++NDLPVGRSV+ETLRLV+AFQ+ + HGEVCPA W P
Sbjct: 194 EDSGHTLRGLFIIDDKGILRQITLNDLPVGRSVDETLRLVQAFQYTDRHGEVCPAGWKPG 253
Query: 778 SPTIKPHPTDSKEYFEKVH 834
S TI P P +YF+K++
Sbjct: 254 SETIIPDPAGKLKYFDKLN 272
>ref|XP_859371.1| PREDICTED: similar to peroxiredoxin 4 isoform 3 [Canis familiaris].
Length = 257
Score = 273 bits (698), Expect = 2e-73
Identities = 128/191 (67%), Positives = 154/191 (80%)
Frame = +1
Query: 262 VTQHAPYFKGTAVVNGEFKELSLDDYKGKYLVLFFYPLDFTFVCPTEIIAFSDKANEFHD 441
V++ APY++GTAV+NGEFKEL L DY+GKYLV FFYPLDFTFVCPTEIIAF D+ EF
Sbjct: 67 VSKPAPYWEGTAVINGEFKELKLTDYRGKYLVFFFYPLDFTFVCPTEIIAFGDRIEEFKS 126
Query: 442 VNCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISRDYGVLLEGPGLALR 621
+N EVVA SVDS F+HLAWINTPR+ GGLG + I LLSDLT QIS+DYGV LE G LR
Sbjct: 127 INTEVVACSVDSQFTHLAWINTPRRQGGLGPIKIPLLSDLTHQISKDYGVYLEDSGHTLR 186
Query: 622 GLFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQFVETHGEVCPANWTPDSPTIKPHP 801
GLFIID G+++ +++NDLPVGRSV+ETLRLV+AFQ+ + HGEVCPA W P S TI P P
Sbjct: 187 GLFIIDDKGILRQITLNDLPVGRSVDETLRLVQAFQYTDRHGEVCPAGWKPGSETIIPDP 246
Query: 802 TDSKEYFEKVH 834
+YF+K++
Sbjct: 247 AGKLKYFDKLN 257
>ref|XP_867426.1| PREDICTED: similar to Peroxiredoxin 2 (Thioredoxin peroxidase 1)
(Thioredoxin-dependent peroxide reductase 1)
(Thiol-specific antioxidant protein) (TSA) (PRP)
(Natural killer cell enhancing factor B) (NKEF-B)
isoform 2 [Canis familiaris].
Length = 198
Score = 270 bits (689), Expect = 2e-72
Identities = 130/198 (65%), Positives = 156/198 (78%)
Frame = +1
Query: 235 TSSSHHSPAVTQHAPYFKGTAVVNGEFKELSLDDYKGKYLVLFFYPLDFTFVCPTEIIAF 414
TS H + + AP F+ TAVV+G FKE+ L DYKGKYLVLFFYPLDFTFVCPTEIIAF
Sbjct: 2 TSGKAH---IGKPAPPFQATAVVDGAFKEVKLCDYKGKYLVLFFYPLDFTFVCPTEIIAF 58
Query: 415 SDKANEFHDVNCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISRDYGVL 594
S+ A +F + CEV+ VSVDS F+HLAWINTPRK GGLG +NI L++D+T+ +S DYGVL
Sbjct: 59 SEHAEDFRKLGCEVLGVSVDSQFTHLAWINTPRKEGGLGPLNIPLVADVTRSLSEDYGVL 118
Query: 595 LEGPGLALRGLFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQFVETHGEVCPANWTP 774
E G+A RGLFIID GV++ ++VNDLPVGRSV+E LRLV+AFQ+ + HGEVCPA W P
Sbjct: 119 KEDEGIAYRGLFIIDGKGVLRQITVNDLPVGRSVDEVLRLVQAFQYTDEHGEVCPAGWKP 178
Query: 775 DSPTIKPHPTDSKEYFEK 828
S TIKP+ DSKEYF K
Sbjct: 179 GSDTIKPNVDDSKEYFSK 196
>ref|XP_542042.2| PREDICTED: similar to Peroxiredoxin 2 (Thioredoxin peroxidase 1)
(Thioredoxin-dependent peroxide reductase 1)
(Thiol-specific antioxidant protein) (TSA) (PRP)
(Natural killer cell enhancing factor B) (NKEF-B)
isoform 1 [Canis familiaris].
Length = 198
Score = 270 bits (689), Expect = 2e-72
Identities = 130/198 (65%), Positives = 156/198 (78%)
Frame = +1
Query: 235 TSSSHHSPAVTQHAPYFKGTAVVNGEFKELSLDDYKGKYLVLFFYPLDFTFVCPTEIIAF 414
TS H + + AP F+ TAVV+G FKE+ L DYKGKYLVLFFYPLDFTFVCPTEIIAF
Sbjct: 2 TSGKAH---IGKPAPPFQATAVVDGAFKEVKLCDYKGKYLVLFFYPLDFTFVCPTEIIAF 58
Query: 415 SDKANEFHDVNCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISRDYGVL 594
S+ A +F + CEV+ VSVDS F+HLAWINTPRK GGLG +NI L++D+T+ +S DYGVL
Sbjct: 59 SEHAEDFRKLGCEVLGVSVDSQFTHLAWINTPRKEGGLGPLNIPLVADVTRSLSEDYGVL 118
Query: 595 LEGPGLALRGLFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQFVETHGEVCPANWTP 774
E G+A RGLFIID GV++ ++VNDLPVGRSV+E LRLV+AFQ+ + HGEVCPA W P
Sbjct: 119 KEDEGIAYRGLFIIDGKGVLRQITVNDLPVGRSVDEVLRLVQAFQYTDEHGEVCPAGWKP 178
Query: 775 DSPTIKPHPTDSKEYFEK 828
S TIKP+ DSKEYF K
Sbjct: 179 GSDTIKPNVDDSKEYFSK 196
>ref|XP_532599.2| PREDICTED: similar to peroxiredoxin 1 [Canis familiaris].
Length = 199
Score = 266 bits (680), Expect = 2e-71
Identities = 126/186 (67%), Positives = 150/186 (80%), Gaps = 1/186 (0%)
Frame = +1
Query: 274 APYFKGTAVV-NGEFKELSLDDYKGKYLVLFFYPLDFTFVCPTEIIAFSDKANEFHDVNC 450
AP FK TAV+ +G+FK+LSL DYKGKY+V FFYPLDFTFVCPTEIIAFSD+A EF +NC
Sbjct: 12 APNFKATAVMPDGQFKDLSLSDYKGKYVVFFFYPLDFTFVCPTEIIAFSDRAEEFKKLNC 71
Query: 451 EVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISRDYGVLLEGPGLALRGLF 630
+V+ SVDSHF HLAWINTP+K GGLG MNI L+SD + I++DYGVL G++ RGLF
Sbjct: 72 QVIGASVDSHFCHLAWINTPKKQGGLGPMNIPLVSDPKRTIAQDYGVLKADEGISFRGLF 131
Query: 631 IIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQFVETHGEVCPANWTPDSPTIKPHPTDS 810
IID G+++ ++VNDLPVGRSV+ETLRLV+AFQF + HGEVCPA W P S TIKP S
Sbjct: 132 IIDDKGILRQITVNDLPVGRSVDETLRLVQAFQFTDKHGEVCPAGWKPGSDTIKPDVQKS 191
Query: 811 KEYFEK 828
KEYF K
Sbjct: 192 KEYFSK 197
>ref|XP_532386.1| PREDICTED: similar to peroxiredoxin 1 isoform 1 [Canis familiaris].
Length = 199
Score = 251 bits (641), Expect = 8e-67
Identities = 121/185 (65%), Positives = 144/185 (77%), Gaps = 1/185 (0%)
Frame = +1
Query: 277 PYFKGTAVV-NGEFKELSLDDYKGKYLVLFFYPLDFTFVCPTEIIAFSDKANEFHDVNCE 453
P FK TAV+ +G FK+LSL DYKGKY+VLFFYPLDFTFVCPTEIIAFSD+A EF +NC+
Sbjct: 13 PNFKATAVMPDGRFKDLSLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKKLNCQ 72
Query: 454 VVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISRDYGVLLEGPGLALRGLFI 633
V+ SVDSHFSHLAWINTP+K GGLG MNI L+SD I++DY VL ++LRGLF+
Sbjct: 73 VIGASVDSHFSHLAWINTPKKQGGLGPMNIPLVSDPKHTIAQDYEVLKADESISLRGLFV 132
Query: 634 IDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQFVETHGEVCPANWTPDSPTIKPHPTDSK 813
ID G++ ++VNDLPVG SV+E+LRLV+AF F + HGEVC A W P S TIKP SK
Sbjct: 133 IDDKGILWQITVNDLPVGHSVDESLRLVQAFPFTDKHGEVCSAGWKPGSDTIKPDVQKSK 192
Query: 814 EYFEK 828
EYF K
Sbjct: 193 EYFSK 197
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 44,721,569
Number of extensions: 1260489
Number of successful extensions: 3721
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 3713
Number of HSP's successfully gapped: 15
Length of query: 353
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 249
Effective length of database: 15,407,560
Effective search space: 3836482440
Effective search space used: 3836482440
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007207
(1059 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_006784.1| thioredoxin-dependent peroxide reductase, mitoc... 439 e-123
Alignment gi|NP_054817.2| thioredoxin-dependent peroxide reductase, mitoc... 403 e-112
Alignment gi|NP_006397.1| peroxiredoxin-4 [Homo sapiens]. 272 3e-73
Alignment gi|NP_005800.3| peroxiredoxin-2 isoform a [Homo sapiens]. 271 1e-72
Alignment gi|NP_001189360.1| peroxiredoxin-1 [Homo sapiens]. 265 5e-71
Alignment gi|NP_002565.1| peroxiredoxin-1 [Homo sapiens]. 265 5e-71
Alignment gi|NP_859047.1| peroxiredoxin-1 [Homo sapiens]. 265 5e-71
Alignment gi|NP_859048.1| peroxiredoxin-1 [Homo sapiens]. 265 5e-71
Alignment gi|NP_859428.1| peroxiredoxin-2 isoform c [Homo sapiens]. 121 1e-27
Alignment gi|NP_004896.1| peroxiredoxin-6 [Homo sapiens]. 64 2e-10
>ref|NP_006784.1| thioredoxin-dependent peroxide reductase, mitochondrial isoform a
precursor [Homo sapiens].
Length = 256
Score = 439 bits (1128), Expect = e-123
Identities = 218/251 (86%), Positives = 228/251 (90%)
Frame = +1
Query: 85 RLLRASVIRHVSAVPWGIXXXXXXXXXXXXXTCLTSVLWSGSSQAKFAFSTSSSHHSPAV 264
RLLRASV RHVSA+PWGI T LT++L SGSSQAK FSTSSS H+PAV
Sbjct: 7 RLLRASVARHVSAIPWGISATAALRPAACGRTSLTNLLCSGSSQAKL-FSTSSSCHAPAV 65
Query: 265 TQHAPYFKGTAVVNGEFKELSLDDYKGKYLVLFFYPLDFTFVCPTEIIAFSDKANEFHDV 444
TQHAPYFKGTAVVNGEFK+LSLDD+KGKYLVLFFYPLDFTFVCPTEI+AFSDKANEFHDV
Sbjct: 66 TQHAPYFKGTAVVNGEFKDLSLDDFKGKYLVLFFYPLDFTFVCPTEIVAFSDKANEFHDV 125
Query: 445 NCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISRDYGVLLEGPGLALRG 624
NCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISRDYGVLLEG GLALRG
Sbjct: 126 NCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISRDYGVLLEGSGLALRG 185
Query: 625 LFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQFVETHGEVCPANWTPDSPTIKPHPT 804
LFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQ+VETHGEVCPANWTPDSPTIKP P
Sbjct: 186 LFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQYVETHGEVCPANWTPDSPTIKPSPA 245
Query: 805 DSKEYFEKVHQ 837
SKEYF+KV+Q
Sbjct: 246 ASKEYFQKVNQ 256
>ref|NP_054817.2| thioredoxin-dependent peroxide reductase, mitochondrial isoform b
[Homo sapiens].
Length = 238
Score = 403 bits (1035), Expect = e-112
Identities = 203/251 (80%), Positives = 212/251 (84%)
Frame = +1
Query: 85 RLLRASVIRHVSAVPWGIXXXXXXXXXXXXXTCLTSVLWSGSSQAKFAFSTSSSHHSPAV 264
RLLRASV RHVSA+PWGI T LT++L SGSSQA
Sbjct: 7 RLLRASVARHVSAIPWGISATAALRPAACGRTSLTNLLCSGSSQA--------------- 51
Query: 265 TQHAPYFKGTAVVNGEFKELSLDDYKGKYLVLFFYPLDFTFVCPTEIIAFSDKANEFHDV 444
PYFKGTAVVNGEFK+LSLDD+KGKYLVLFFYPLDFTFVCPTEI+AFSDKANEFHDV
Sbjct: 52 ----PYFKGTAVVNGEFKDLSLDDFKGKYLVLFFYPLDFTFVCPTEIVAFSDKANEFHDV 107
Query: 445 NCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISRDYGVLLEGPGLALRG 624
NCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISRDYGVLLEG GLALRG
Sbjct: 108 NCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISRDYGVLLEGSGLALRG 167
Query: 625 LFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQFVETHGEVCPANWTPDSPTIKPHPT 804
LFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQ+VETHGEVCPANWTPDSPTIKP P
Sbjct: 168 LFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQYVETHGEVCPANWTPDSPTIKPSPA 227
Query: 805 DSKEYFEKVHQ 837
SKEYF+KV+Q
Sbjct: 228 ASKEYFQKVNQ 238
>ref|NP_006397.1| peroxiredoxin-4 [Homo sapiens].
Length = 271
Score = 272 bits (696), Expect = 3e-73
Identities = 130/207 (62%), Positives = 162/207 (78%), Gaps = 1/207 (0%)
Frame = +1
Query: 217 AKFAFSTSSSHHSPA-VTQHAPYFKGTAVVNGEFKELSLDDYKGKYLVLFFYPLDFTFVC 393
++ + + S H S A +++ APY++GTAV++GEFKEL L DY+GKYLV FFYPLDFTFVC
Sbjct: 65 SRVSVADHSLHLSKAKISKPAPYWEGTAVIDGEFKELKLTDYRGKYLVFFFYPLDFTFVC 124
Query: 394 PTEIIAFSDKANEFHDVNCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQI 573
PTEIIAF D+ EF +N EVVA SVDS F+HLAWINTPR+ GGLG + I LLSDLT QI
Sbjct: 125 PTEIIAFGDRLEEFRSINTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLTHQI 184
Query: 574 SRDYGVLLEGPGLALRGLFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQFVETHGEV 753
S+DYGV LE G LRGLFIID G+++ +++NDLPVGRSV+ETLRLV+AFQ+ + HGEV
Sbjct: 185 SKDYGVYLEDSGHTLRGLFIIDDKGILRQITLNDLPVGRSVDETLRLVQAFQYTDKHGEV 244
Query: 754 CPANWTPDSPTIKPHPTDSKEYFEKVH 834
CPA W P S TI P P +YF+K++
Sbjct: 245 CPAGWKPGSETIIPDPAGKLKYFDKLN 271
>ref|NP_005800.3| peroxiredoxin-2 isoform a [Homo sapiens].
Length = 198
Score = 271 bits (692), Expect = 1e-72
Identities = 127/185 (68%), Positives = 152/185 (82%)
Frame = +1
Query: 274 APYFKGTAVVNGEFKELSLDDYKGKYLVLFFYPLDFTFVCPTEIIAFSDKANEFHDVNCE 453
AP FK TAVV+G FKE+ L DYKGKY+VLFFYPLDFTFVCPTEIIAFS++A +F + CE
Sbjct: 12 APDFKATAVVDGAFKEVKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSNRAEDFRKLGCE 71
Query: 454 VVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISRDYGVLLEGPGLALRGLFI 633
V+ VSVDS F+HLAWINTPRK GGLG +NI LL+D+T+++S DYGVL G+A RGLFI
Sbjct: 72 VLGVSVDSQFTHLAWINTPRKEGGLGPLNIPLLADVTRRLSEDYGVLKTDEGIAYRGLFI 131
Query: 634 IDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQFVETHGEVCPANWTPDSPTIKPHPTDSK 813
ID GV++ ++VNDLPVGRSV+E LRLV+AFQ+ + HGEVCPA W P S TIKP+ DSK
Sbjct: 132 IDGKGVLRQITVNDLPVGRSVDEALRLVQAFQYTDEHGEVCPAGWKPGSDTIKPNVDDSK 191
Query: 814 EYFEK 828
EYF K
Sbjct: 192 EYFSK 196
>ref|NP_001189360.1| peroxiredoxin-1 [Homo sapiens].
Length = 199
Score = 265 bits (677), Expect = 5e-71
Identities = 124/186 (66%), Positives = 150/186 (80%), Gaps = 1/186 (0%)
Frame = +1
Query: 274 APYFKGTAVV-NGEFKELSLDDYKGKYLVLFFYPLDFTFVCPTEIIAFSDKANEFHDVNC 450
AP FK TAV+ +G+FK++SL DYKGKY+V FFYPLDFTFVCPTEIIAFSD+A EF +NC
Sbjct: 12 APNFKATAVMPDGQFKDISLSDYKGKYVVFFFYPLDFTFVCPTEIIAFSDRAEEFKKLNC 71
Query: 451 EVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISRDYGVLLEGPGLALRGLF 630
+V+ SVDSHF HLAW+NTP+K GGLG MNI L+SD + I++DYGVL G++ RGLF
Sbjct: 72 QVIGASVDSHFCHLAWVNTPKKQGGLGPMNIPLVSDPKRTIAQDYGVLKADEGISFRGLF 131
Query: 631 IIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQFVETHGEVCPANWTPDSPTIKPHPTDS 810
IID G+++ ++VNDLPVGRSV+ETLRLV+AFQF + HGEVCPA W P S TIKP S
Sbjct: 132 IIDDKGILRQITVNDLPVGRSVDETLRLVQAFQFTDKHGEVCPAGWKPGSDTIKPDVQKS 191
Query: 811 KEYFEK 828
KEYF K
Sbjct: 192 KEYFSK 197
>ref|NP_002565.1| peroxiredoxin-1 [Homo sapiens].
Length = 199
Score = 265 bits (677), Expect = 5e-71
Identities = 124/186 (66%), Positives = 150/186 (80%), Gaps = 1/186 (0%)
Frame = +1
Query: 274 APYFKGTAVV-NGEFKELSLDDYKGKYLVLFFYPLDFTFVCPTEIIAFSDKANEFHDVNC 450
AP FK TAV+ +G+FK++SL DYKGKY+V FFYPLDFTFVCPTEIIAFSD+A EF +NC
Sbjct: 12 APNFKATAVMPDGQFKDISLSDYKGKYVVFFFYPLDFTFVCPTEIIAFSDRAEEFKKLNC 71
Query: 451 EVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISRDYGVLLEGPGLALRGLF 630
+V+ SVDSHF HLAW+NTP+K GGLG MNI L+SD + I++DYGVL G++ RGLF
Sbjct: 72 QVIGASVDSHFCHLAWVNTPKKQGGLGPMNIPLVSDPKRTIAQDYGVLKADEGISFRGLF 131
Query: 631 IIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQFVETHGEVCPANWTPDSPTIKPHPTDS 810
IID G+++ ++VNDLPVGRSV+ETLRLV+AFQF + HGEVCPA W P S TIKP S
Sbjct: 132 IIDDKGILRQITVNDLPVGRSVDETLRLVQAFQFTDKHGEVCPAGWKPGSDTIKPDVQKS 191
Query: 811 KEYFEK 828
KEYF K
Sbjct: 192 KEYFSK 197
>ref|NP_859047.1| peroxiredoxin-1 [Homo sapiens].
Length = 199
Score = 265 bits (677), Expect = 5e-71
Identities = 124/186 (66%), Positives = 150/186 (80%), Gaps = 1/186 (0%)
Frame = +1
Query: 274 APYFKGTAVV-NGEFKELSLDDYKGKYLVLFFYPLDFTFVCPTEIIAFSDKANEFHDVNC 450
AP FK TAV+ +G+FK++SL DYKGKY+V FFYPLDFTFVCPTEIIAFSD+A EF +NC
Sbjct: 12 APNFKATAVMPDGQFKDISLSDYKGKYVVFFFYPLDFTFVCPTEIIAFSDRAEEFKKLNC 71
Query: 451 EVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISRDYGVLLEGPGLALRGLF 630
+V+ SVDSHF HLAW+NTP+K GGLG MNI L+SD + I++DYGVL G++ RGLF
Sbjct: 72 QVIGASVDSHFCHLAWVNTPKKQGGLGPMNIPLVSDPKRTIAQDYGVLKADEGISFRGLF 131
Query: 631 IIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQFVETHGEVCPANWTPDSPTIKPHPTDS 810
IID G+++ ++VNDLPVGRSV+ETLRLV+AFQF + HGEVCPA W P S TIKP S
Sbjct: 132 IIDDKGILRQITVNDLPVGRSVDETLRLVQAFQFTDKHGEVCPAGWKPGSDTIKPDVQKS 191
Query: 811 KEYFEK 828
KEYF K
Sbjct: 192 KEYFSK 197
>ref|NP_859048.1| peroxiredoxin-1 [Homo sapiens].
Length = 199
Score = 265 bits (677), Expect = 5e-71
Identities = 124/186 (66%), Positives = 150/186 (80%), Gaps = 1/186 (0%)
Frame = +1
Query: 274 APYFKGTAVV-NGEFKELSLDDYKGKYLVLFFYPLDFTFVCPTEIIAFSDKANEFHDVNC 450
AP FK TAV+ +G+FK++SL DYKGKY+V FFYPLDFTFVCPTEIIAFSD+A EF +NC
Sbjct: 12 APNFKATAVMPDGQFKDISLSDYKGKYVVFFFYPLDFTFVCPTEIIAFSDRAEEFKKLNC 71
Query: 451 EVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISRDYGVLLEGPGLALRGLF 630
+V+ SVDSHF HLAW+NTP+K GGLG MNI L+SD + I++DYGVL G++ RGLF
Sbjct: 72 QVIGASVDSHFCHLAWVNTPKKQGGLGPMNIPLVSDPKRTIAQDYGVLKADEGISFRGLF 131
Query: 631 IIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQFVETHGEVCPANWTPDSPTIKPHPTDS 810
IID G+++ ++VNDLPVGRSV+ETLRLV+AFQF + HGEVCPA W P S TIKP S
Sbjct: 132 IIDDKGILRQITVNDLPVGRSVDETLRLVQAFQFTDKHGEVCPAGWKPGSDTIKPDVQKS 191
Query: 811 KEYFEK 828
KEYF K
Sbjct: 192 KEYFSK 197
>ref|NP_859428.1| peroxiredoxin-2 isoform c [Homo sapiens].
Length = 142
Score = 121 bits (303), Expect = 1e-27
Identities = 55/75 (73%), Positives = 64/75 (85%)
Frame = +1
Query: 274 APYFKGTAVVNGEFKELSLDDYKGKYLVLFFYPLDFTFVCPTEIIAFSDKANEFHDVNCE 453
AP FK TAVV+G FKE+ L DYKGKY+VLFFYPLDFTFVCPTEIIAFS++A +F + CE
Sbjct: 12 APDFKATAVVDGAFKEVKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSNRAEDFRKLGCE 71
Query: 454 VVAVSVDSHFSHLAW 498
V+ VSVDS F+HLAW
Sbjct: 72 VLGVSVDSQFTHLAW 86
>ref|NP_004896.1| peroxiredoxin-6 [Homo sapiens].
Length = 224
Score = 64.3 bits (155), Expect = 2e-10
Identities = 52/196 (26%), Positives = 90/196 (45%), Gaps = 10/196 (5%)
Frame = +1
Query: 274 APYFKGTAVVNGEFKELSLDDYKG-KYLVLFFYPLDFTFVCPTEIIAFSDKANEFHDVNC 450
AP F+ V + D+ G + +LF +P DFT VC TE+ + A EF N
Sbjct: 11 APNFEANTTVG----RIRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAKRNV 66
Query: 451 EVVAVSVDSHFSHLAW---INTPRKNGGLGHMNIALLSDLTKQISRDYGVL------LEG 603
+++A+S+DS HLAW IN + ++ D ++++ G+L +G
Sbjct: 67 KLIALSIDSVEDHLAWSKDINAYNCEEPTEKLPFPIIDDRNRELAILLGMLDPAEKDEKG 126
Query: 604 PGLALRGLFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQFVETHGEVCPANWTPDSP 783
+ R +F+ P+ +K + GR+ +E LR+V + Q P +W D
Sbjct: 127 MPVTARVVFVFGPDKKLKLSILYPATTGRNFDEILRVVISLQLTAEKRVATPVDW-KDGD 185
Query: 784 TIKPHPTDSKEYFEKV 831
++ PT +E +K+
Sbjct: 186 SVMVLPTIPEEEAKKL 201
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 44,012,219
Number of extensions: 1250452
Number of successful extensions: 3867
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 3860
Number of HSP's successfully gapped: 10
Length of query: 353
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 249
Effective length of database: 14,868,908
Effective search space: 3702358092
Effective search space used: 3702358092
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007207
(1059 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_031478.1| thioredoxin-dependent peroxide reductase, mitoc... 433 e-121
Alignment gi|NP_058044.1| peroxiredoxin-4 [Mus musculus]. 272 3e-73
Alignment gi|NP_035693.3| peroxiredoxin-2 [Mus musculus]. 269 3e-72
Alignment gi|NP_035164.1| peroxiredoxin-1 [Mus musculus]. 261 5e-70
Alignment gi|XP_003086229.1| PREDICTED: peroxiredoxin-2-like [Mus musculu... 252 4e-67
Alignment gi|NP_796230.1| peroxiredoxin 6, related sequence 1 [Mus muscul... 67 2e-11
Alignment gi|NP_031479.1| peroxiredoxin-6 [Mus musculus]. 62 1e-09
Alignment gi|XP_003086860.1| PREDICTED: peroxiredoxin-6-like, partial [Mu... 58 1e-08
>ref|NP_031478.1| thioredoxin-dependent peroxide reductase, mitochondrial precursor
[Mus musculus].
Length = 257
Score = 433 bits (1114), Expect = e-121
Identities = 211/251 (84%), Positives = 222/251 (88%)
Frame = +1
Query: 85 RLLRASVIRHVSAVPWGIXXXXXXXXXXXXXTCLTSVLWSGSSQAKFAFSTSSSHHSPAV 264
RLL +SV RH SA+ I TCLT +LWS S+Q K AFSTSSS H+PAV
Sbjct: 7 RLLWSSVARHASAISRSISASTVLRPVASRRTCLTDILWSASAQGKSAFSTSSSFHTPAV 66
Query: 265 TQHAPYFKGTAVVNGEFKELSLDDYKGKYLVLFFYPLDFTFVCPTEIIAFSDKANEFHDV 444
TQHAPYFKGTAVVNGEFKELSLDD+KGKYLVLFFYPLDFTFVCPTEI+AFSDKANEFHDV
Sbjct: 67 TQHAPYFKGTAVVNGEFKELSLDDFKGKYLVLFFYPLDFTFVCPTEIVAFSDKANEFHDV 126
Query: 445 NCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISRDYGVLLEGPGLALRG 624
NCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNI LLSD+TKQISRDYGVLLE G+ALRG
Sbjct: 127 NCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNITLLSDITKQISRDYGVLLESAGIALRG 186
Query: 625 LFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQFVETHGEVCPANWTPDSPTIKPHPT 804
LFIIDPNGV+KHLSVNDLPVGRSVEETLRLVKAFQFVETHGEVCPANWTP+SPTIKP PT
Sbjct: 187 LFIIDPNGVVKHLSVNDLPVGRSVEETLRLVKAFQFVETHGEVCPANWTPESPTIKPSPT 246
Query: 805 DSKEYFEKVHQ 837
SKEYFEKVHQ
Sbjct: 247 ASKEYFEKVHQ 257
>ref|NP_058044.1| peroxiredoxin-4 [Mus musculus].
Length = 274
Score = 272 bits (696), Expect = 3e-73
Identities = 131/207 (63%), Positives = 161/207 (77%), Gaps = 1/207 (0%)
Frame = +1
Query: 217 AKFAFSTSSSHHSPA-VTQHAPYFKGTAVVNGEFKELSLDDYKGKYLVLFFYPLDFTFVC 393
++ + + S H S A +++ APY++GTAV+NGEFKEL L DY+GKYLV FFYPLDFTFVC
Sbjct: 68 SRVSVADHSLHLSKAKISKPAPYWEGTAVINGEFKELKLTDYRGKYLVFFFYPLDFTFVC 127
Query: 394 PTEIIAFSDKANEFHDVNCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQI 573
PTEIIAF D+ EF +N EVVA SVDS F+HLAWINTPR+ GGLG + I LLSDL QI
Sbjct: 128 PTEIIAFGDRIEEFKSINTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLNHQI 187
Query: 574 SRDYGVLLEGPGLALRGLFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQFVETHGEV 753
S+DYGV LE G LRGLFIID GV++ +++NDLPVGRSV+ETLRLV+AFQ+ + HGEV
Sbjct: 188 SKDYGVYLEDSGHTLRGLFIIDDKGVLRQITLNDLPVGRSVDETLRLVQAFQYTDKHGEV 247
Query: 754 CPANWTPDSPTIKPHPTDSKEYFEKVH 834
CPA W P S TI P P +YF+K++
Sbjct: 248 CPAGWKPGSETIIPDPAGKLKYFDKLN 274
>ref|NP_035693.3| peroxiredoxin-2 [Mus musculus].
Length = 198
Score = 269 bits (687), Expect = 3e-72
Identities = 126/189 (66%), Positives = 152/189 (80%)
Frame = +1
Query: 262 VTQHAPYFKGTAVVNGEFKELSLDDYKGKYLVLFFYPLDFTFVCPTEIIAFSDKANEFHD 441
+ + AP F TAVV+G FKE+ L DY+GKY+VLFFYPLDFTFVCPTEIIAFSD A +F
Sbjct: 8 IGKSAPDFTATAVVDGAFKEIKLSDYRGKYVVLFFYPLDFTFVCPTEIIAFSDHAEDFRK 67
Query: 442 VNCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISRDYGVLLEGPGLALR 621
+ CEV+ VSVDS F+HLAWINTPRK GGLG +NI LL+D+TK +S++YGVL G+A R
Sbjct: 68 LGCEVLGVSVDSQFTHLAWINTPRKEGGLGPLNIPLLADVTKSLSQNYGVLKNDEGIAYR 127
Query: 622 GLFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQFVETHGEVCPANWTPDSPTIKPHP 801
GLFIID GV++ ++VNDLPVGRSV+E LRLV+AFQ+ + HGEVCPA W P S TIKP+
Sbjct: 128 GLFIIDAKGVLRQITVNDLPVGRSVDEALRLVQAFQYTDEHGEVCPAGWKPGSDTIKPNV 187
Query: 802 TDSKEYFEK 828
DSKEYF K
Sbjct: 188 DDSKEYFSK 196
>ref|NP_035164.1| peroxiredoxin-1 [Mus musculus].
Length = 199
Score = 261 bits (668), Expect = 5e-70
Identities = 121/186 (65%), Positives = 150/186 (80%), Gaps = 1/186 (0%)
Frame = +1
Query: 274 APYFKGTAVV-NGEFKELSLDDYKGKYLVLFFYPLDFTFVCPTEIIAFSDKANEFHDVNC 450
AP FK TAV+ +G+FK++SL +YKGKY+V FFYPLDFTFVCPTEIIAFSD+A+EF +NC
Sbjct: 12 APNFKATAVMPDGQFKDISLSEYKGKYVVFFFYPLDFTFVCPTEIIAFSDRADEFKKLNC 71
Query: 451 EVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISRDYGVLLEGPGLALRGLF 630
+V+ SVDSHF HLAWINTP+K GGLG MNI L+SD + I++DYGVL G++ RGLF
Sbjct: 72 QVIGASVDSHFCHLAWINTPKKQGGLGPMNIPLISDPKRTIAQDYGVLKADEGISFRGLF 131
Query: 631 IIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQFVETHGEVCPANWTPDSPTIKPHPTDS 810
IID G+++ +++NDLPVGRSV+E +RLV+AFQF + HGEVCPA W P S TIKP S
Sbjct: 132 IIDDKGILRQITINDLPVGRSVDEIIRLVQAFQFTDKHGEVCPAGWKPGSDTIKPDVNKS 191
Query: 811 KEYFEK 828
KEYF K
Sbjct: 192 KEYFSK 197
>ref|XP_003086229.1| PREDICTED: peroxiredoxin-2-like [Mus musculus].
Length = 198
Score = 252 bits (643), Expect = 4e-67
Identities = 120/189 (63%), Positives = 145/189 (76%)
Frame = +1
Query: 262 VTQHAPYFKGTAVVNGEFKELSLDDYKGKYLVLFFYPLDFTFVCPTEIIAFSDKANEFHD 441
+ + P F TAVV+G FKE+ L DY+GKY+VLFFYPLD TFVCPTEIIAFSD A +F
Sbjct: 8 IGKSTPDFTATAVVDGTFKEIKLSDYRGKYMVLFFYPLDITFVCPTEIIAFSDHAEDFRK 67
Query: 442 VNCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISRDYGVLLEGPGLALR 621
+ CEV+ VSVDS F+H AWINT RK GGLG +NI LL+D+TK +S++YGVL G+A R
Sbjct: 68 LGCEVLGVSVDSQFTHQAWINTSRKEGGLGPLNIPLLADVTKSLSQNYGVLKNDEGIAYR 127
Query: 622 GLFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQFVETHGEVCPANWTPDSPTIKPHP 801
GLFIID GV++ ++VNDLPVGRSV E LRLV+AFQ+ + HGEV PA W P S TIKP+
Sbjct: 128 GLFIIDAKGVLRQITVNDLPVGRSVHEALRLVQAFQYTDEHGEVSPAGWKPGSDTIKPNV 187
Query: 802 TDSKEYFEK 828
SKEYF K
Sbjct: 188 DYSKEYFSK 196
>ref|NP_796230.1| peroxiredoxin 6, related sequence 1 [Mus musculus].
Length = 224
Score = 67.0 bits (162), Expect = 2e-11
Identities = 51/177 (28%), Positives = 81/177 (45%), Gaps = 10/177 (5%)
Frame = +1
Query: 268 QHAPYFKGTAVVNGEFKELSLDDYKGK-YLVLFFYPLDFTFVCPTEIIAFSDKANEFHDV 444
+ AP F+ + + D+ G + +LF +P DFT VC TE+ + A EF
Sbjct: 9 EEAPDFEANTTIG----RIRFHDFLGNSWGMLFSHPKDFTPVCTTELGRAAKLAPEFAKR 64
Query: 445 NCEVVAVSVDSHFSHLAW---INTPRKNGGLGHMNIALLSDLTKQISRDYGVL------L 597
N +++A+SVDS HLAW IN + ++ D + IS + +L
Sbjct: 65 NVKLIALSVDSVEDHLAWSKDINAYNGATPKEKLPFPIIDDKDRDISILFCMLDPVEKDA 124
Query: 598 EGPGLALRGLFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQFVETHGEVCPANW 768
L RG+FI P+ +K + GR+ +E LR++ + Q ET P +W
Sbjct: 125 NSMPLTARGVFIFGPDKKLKMSLLYPNSTGRNFDEILRVIDSLQLTETKPVATPVDW 181
>ref|NP_031479.1| peroxiredoxin-6 [Mus musculus].
Length = 224
Score = 61.6 bits (148), Expect = 1e-09
Identities = 51/191 (26%), Positives = 85/191 (44%), Gaps = 10/191 (5%)
Frame = +1
Query: 274 APYFKGTAVVNGEFKELSLDDYKG-KYLVLFFYPLDFTFVCPTEIIAFSDKANEFHDVNC 450
AP F+ + + D+ G + +LF +P DFT VC TE+ + A EF N
Sbjct: 11 APNFEANTTIG----RIRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAKRNV 66
Query: 451 EVVAVSVDSHFSHLAW---INTPRKNGGLGHMNIALLSDLTKQISRDYGVL------LEG 603
+++A+S+DS HLAW IN + ++ D + ++ G+L
Sbjct: 67 KLIALSIDSVEDHLAWSKDINAYNGETPTEKLPFPIIDDKGRDLAILLGMLDPVEKDANN 126
Query: 604 PGLALRGLFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQFVETHGEVCPANWTPDSP 783
+ R +FI P+ +K + GR+ +E LR+V + Q T P +W
Sbjct: 127 MPVTARVVFIFGPDKKLKLSILYPATTGRNFDEILRVVDSLQLTGTKPVATPVDW-KKGE 185
Query: 784 TIKPHPTDSKE 816
++ PT S+E
Sbjct: 186 SVMVVPTLSEE 196
>ref|XP_003086860.1| PREDICTED: peroxiredoxin-6-like, partial [Mus musculus].
Length = 244
Score = 58.2 bits (139), Expect = 1e-08
Identities = 50/191 (26%), Positives = 84/191 (43%), Gaps = 10/191 (5%)
Frame = +1
Query: 274 APYFKGTAVVNGEFKELSLDDYKG-KYLVLFFYPLDFTFVCPTEIIAFSDKANEFHDVNC 450
AP F+ + + D+ G + +LF +P DFT VC TE+ + A EF N
Sbjct: 31 APNFEANTTIG----RIRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAKRNV 86
Query: 451 EVVAVSVDSHFSHLAW---INTPRKNGGLGHMNIALLSDLTKQISRDYGVL------LEG 603
+++A+S+DS HLAW IN + ++ D + ++ G+L
Sbjct: 87 KLIALSIDSVEDHLAWSKDINAYNGETPTEKLPFPIIDDKGRDLAILLGMLDPVEKDDNN 146
Query: 604 PGLALRGLFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQFVETHGEVCPANWTPDSP 783
+ R +FI P+ +K + R+ +E LR+V + Q T P +W
Sbjct: 147 MPVTARVVFIFGPDKKLKLSILYPATTSRNFDEILRVVDSLQLTGTKPVATPVDW-KKGE 205
Query: 784 TIKPHPTDSKE 816
++ PT S+E
Sbjct: 206 SVMVVPTLSEE 216
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 37,339,924
Number of extensions: 1050995
Number of successful extensions: 3049
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 3044
Number of HSP's successfully gapped: 8
Length of query: 353
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 251
Effective length of database: 12,553,887
Effective search space: 3151025637
Effective search space used: 3151025637
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007207
(1059 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001928549.1| PREDICTED: thioredoxin-dependent peroxide re... 486 e-137
Alignment gi|XP_003123404.2| PREDICTED: peroxiredoxin-2-like [Sus scrofa]. 278 4e-75
Alignment gi|XP_001927404.1| PREDICTED: peroxiredoxin-4 [Sus scrofa]. 273 2e-73
Alignment gi|XP_003128090.1| PREDICTED: peroxiredoxin-1-like isoform 5 [S... 248 4e-66
Alignment gi|XP_003128089.1| PREDICTED: peroxiredoxin-1-like isoform 4 [S... 243 1e-64
Alignment gi|XP_003128088.1| PREDICTED: peroxiredoxin-1-like isoform 3 [S... 243 1e-64
Alignment gi|XP_003128087.1| PREDICTED: peroxiredoxin-1-like isoform 2 [S... 243 1e-64
Alignment gi|XP_003128086.1| PREDICTED: peroxiredoxin-1-like isoform 1 [S... 243 1e-64
Alignment gi|NP_999573.1| peroxiredoxin-6 [Sus scrofa]. 64 1e-10
>ref|XP_001928549.1| PREDICTED: thioredoxin-dependent peroxide reductase, mitochondrial
isoform 1 [Sus scrofa].
Length = 261
Score = 486 bits (1250), Expect = e-137
Identities = 238/251 (94%), Positives = 238/251 (94%)
Frame = +1
Query: 85 RLLRASVIRHVSAVPWGIXXXXXXXXXXXXXTCLTSVLWSGSSQAKFAFSTSSSHHSPAV 264
RLLRASVIRHVSAVPWGI TCLTSVLWSGSSQAKFAFSTSSSHHSPAV
Sbjct: 11 RLLRASVIRHVSAVPWGISASAALRPAPSRRTCLTSVLWSGSSQAKFAFSTSSSHHSPAV 70
Query: 265 TQHAPYFKGTAVVNGEFKELSLDDYKGKYLVLFFYPLDFTFVCPTEIIAFSDKANEFHDV 444
TQHAPYFKGTAVVNGEFKELSLDDYKGKYLVLFFYPLDFTFVCPTEIIAFSDKANEFHDV
Sbjct: 71 TQHAPYFKGTAVVNGEFKELSLDDYKGKYLVLFFYPLDFTFVCPTEIIAFSDKANEFHDV 130
Query: 445 NCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISRDYGVLLEGPGLALRG 624
NCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISRDYGVLLEGPGLALRG
Sbjct: 131 NCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISRDYGVLLEGPGLALRG 190
Query: 625 LFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQFVETHGEVCPANWTPDSPTIKPHPT 804
LFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQFVETHGEVCPANWTPDSPTIKPHPT
Sbjct: 191 LFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQFVETHGEVCPANWTPDSPTIKPHPT 250
Query: 805 DSKEYFEKVHQ 837
DSKEYFEKVHQ
Sbjct: 251 DSKEYFEKVHQ 261
>ref|XP_003123404.2| PREDICTED: peroxiredoxin-2-like [Sus scrofa].
Length = 198
Score = 278 bits (711), Expect = 4e-75
Identities = 131/185 (70%), Positives = 152/185 (82%)
Frame = +1
Query: 274 APYFKGTAVVNGEFKELSLDDYKGKYLVLFFYPLDFTFVCPTEIIAFSDKANEFHDVNCE 453
AP F+ TAVVNG FKE+ L DYKGKYLVLFFYPLDFTFVCPTEIIAFSD+A EFH + CE
Sbjct: 12 APEFQATAVVNGAFKEVKLSDYKGKYLVLFFYPLDFTFVCPTEIIAFSDRAEEFHQLGCE 71
Query: 454 VVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISRDYGVLLEGPGLALRGLFI 633
V+ VSVDS F+HLAWINTPRK GGLG + I LL+D+T+ +S DYGVL E G+A RGLFI
Sbjct: 72 VLGVSVDSQFTHLAWINTPRKEGGLGPLKIPLLADVTRNLSLDYGVLKEDEGIAYRGLFI 131
Query: 634 IDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQFVETHGEVCPANWTPDSPTIKPHPTDSK 813
ID GV++ ++VNDLPVGRSV+E LRLV+AFQ+ + HGEVCPA W P S TIKP+ DSK
Sbjct: 132 IDGKGVLRQITVNDLPVGRSVDEALRLVQAFQYTDEHGEVCPAGWKPGSDTIKPNVDDSK 191
Query: 814 EYFEK 828
EYF K
Sbjct: 192 EYFSK 196
>ref|XP_001927404.1| PREDICTED: peroxiredoxin-4 [Sus scrofa].
Length = 272
Score = 273 bits (697), Expect = 2e-73
Identities = 130/207 (62%), Positives = 161/207 (77%), Gaps = 1/207 (0%)
Frame = +1
Query: 217 AKFAFSTSSSHHSPA-VTQHAPYFKGTAVVNGEFKELSLDDYKGKYLVLFFYPLDFTFVC 393
++ + + S H S A +++ APY++GTAV+NGEFKEL L DY+GKYLV FFYPLDFTFVC
Sbjct: 66 SRLSVADHSLHLSKAKISKPAPYWEGTAVINGEFKELKLTDYRGKYLVFFFYPLDFTFVC 125
Query: 394 PTEIIAFSDKANEFHDVNCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQI 573
PTEIIAF D+ EF +N EVVA SVDS F+HLAWINTPR+ GGLG + I LLSDL QI
Sbjct: 126 PTEIIAFGDRIEEFRSINTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLNHQI 185
Query: 574 SRDYGVLLEGPGLALRGLFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQFVETHGEV 753
S+DYGV LE G LRGLFIID G+++ +++NDLPVGRSV+ETLRLV+AFQ+ + HGEV
Sbjct: 186 SKDYGVYLEDSGHTLRGLFIIDDKGILRQITLNDLPVGRSVDETLRLVQAFQYTDKHGEV 245
Query: 754 CPANWTPDSPTIKPHPTDSKEYFEKVH 834
CPA W P S TI P P +YF+K++
Sbjct: 246 CPAGWKPGSETIIPDPAGKLKYFDKLN 272
>ref|XP_003128090.1| PREDICTED: peroxiredoxin-1-like isoform 5 [Sus scrofa].
Length = 197
Score = 248 bits (633), Expect = 4e-66
Identities = 117/190 (61%), Positives = 148/190 (77%), Gaps = 1/190 (0%)
Frame = +1
Query: 262 VTQHAPYFKGTAVV-NGEFKELSLDDYKGKYLVLFFYPLDFTFVCPTEIIAFSDKANEFH 438
+ AP+FK TAV+ +G+FK++SL DYKGKY+V FFYPLDFTFVCPTEIIAFS++A EF
Sbjct: 8 IGHRAPHFKATAVMPDGQFKDISLSDYKGKYVVFFFYPLDFTFVCPTEIIAFSERAEEFK 67
Query: 439 DVNCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISRDYGVLLEGPGLAL 618
+NC+V+ SVD + + WINTP+K GGLG MNI L+SD + I++DYGVL G++
Sbjct: 68 KLNCQVIGASVD--LTSVIWINTPKKQGGLGPMNIPLISDPKRTIAQDYGVLKADEGISF 125
Query: 619 RGLFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQFVETHGEVCPANWTPDSPTIKPH 798
RGLFIID G+++ +++NDLPVGRSV+ETLRLV+AFQF + HGEVCPA W P S TIKP
Sbjct: 126 RGLFIIDDKGILRQITINDLPVGRSVDETLRLVQAFQFTDKHGEVCPAGWKPGSDTIKPD 185
Query: 799 PTDSKEYFEK 828
SKEYF K
Sbjct: 186 VQKSKEYFSK 195
>ref|XP_003128089.1| PREDICTED: peroxiredoxin-1-like isoform 4 [Sus scrofa].
Length = 202
Score = 243 bits (621), Expect = 1e-64
Identities = 117/193 (60%), Positives = 147/193 (76%), Gaps = 4/193 (2%)
Frame = +1
Query: 262 VTQHAPYFKGTAVV-NGEFKELSLDDYKGKYLVLFFYPLDFTFVCPTEIIAFSDKANEFH 438
+ AP+FK TAV+ +G+FK++SL DYKGKY+V FFYPLDFTFVCPTEIIAFS++A EF
Sbjct: 8 IGHRAPHFKATAVMPDGQFKDISLSDYKGKYVVFFFYPLDFTFVCPTEIIAFSERAEEFK 67
Query: 439 DVNCEVVAVSVDSH---FSHLAWINTPRKNGGLGHMNIALLSDLTKQISRDYGVLLEGPG 609
+NC+V+ SVD + WINTP+K GGLG MNI L+SD + I++DYGVL G
Sbjct: 68 KLNCQVIGASVDLTSVIWLGNLWINTPKKQGGLGPMNIPLISDPKRTIAQDYGVLKADEG 127
Query: 610 LALRGLFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQFVETHGEVCPANWTPDSPTI 789
++ RGLFIID G+++ +++NDLPVGRSV+ETLRLV+AFQF + HGEVCPA W P S TI
Sbjct: 128 ISFRGLFIIDDKGILRQITINDLPVGRSVDETLRLVQAFQFTDKHGEVCPAGWKPGSDTI 187
Query: 790 KPHPTDSKEYFEK 828
KP SKEYF K
Sbjct: 188 KPDVQKSKEYFSK 200
>ref|XP_003128088.1| PREDICTED: peroxiredoxin-1-like isoform 3 [Sus scrofa].
Length = 202
Score = 243 bits (621), Expect = 1e-64
Identities = 117/193 (60%), Positives = 147/193 (76%), Gaps = 4/193 (2%)
Frame = +1
Query: 262 VTQHAPYFKGTAVV-NGEFKELSLDDYKGKYLVLFFYPLDFTFVCPTEIIAFSDKANEFH 438
+ AP+FK TAV+ +G+FK++SL DYKGKY+V FFYPLDFTFVCPTEIIAFS++A EF
Sbjct: 8 IGHRAPHFKATAVMPDGQFKDISLSDYKGKYVVFFFYPLDFTFVCPTEIIAFSERAEEFK 67
Query: 439 DVNCEVVAVSVDSH---FSHLAWINTPRKNGGLGHMNIALLSDLTKQISRDYGVLLEGPG 609
+NC+V+ SVD + WINTP+K GGLG MNI L+SD + I++DYGVL G
Sbjct: 68 KLNCQVIGASVDLTSVIWLGNLWINTPKKQGGLGPMNIPLISDPKRTIAQDYGVLKADEG 127
Query: 610 LALRGLFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQFVETHGEVCPANWTPDSPTI 789
++ RGLFIID G+++ +++NDLPVGRSV+ETLRLV+AFQF + HGEVCPA W P S TI
Sbjct: 128 ISFRGLFIIDDKGILRQITINDLPVGRSVDETLRLVQAFQFTDKHGEVCPAGWKPGSDTI 187
Query: 790 KPHPTDSKEYFEK 828
KP SKEYF K
Sbjct: 188 KPDVQKSKEYFSK 200
>ref|XP_003128087.1| PREDICTED: peroxiredoxin-1-like isoform 2 [Sus scrofa].
Length = 202
Score = 243 bits (621), Expect = 1e-64
Identities = 117/193 (60%), Positives = 147/193 (76%), Gaps = 4/193 (2%)
Frame = +1
Query: 262 VTQHAPYFKGTAVV-NGEFKELSLDDYKGKYLVLFFYPLDFTFVCPTEIIAFSDKANEFH 438
+ AP+FK TAV+ +G+FK++SL DYKGKY+V FFYPLDFTFVCPTEIIAFS++A EF
Sbjct: 8 IGHRAPHFKATAVMPDGQFKDISLSDYKGKYVVFFFYPLDFTFVCPTEIIAFSERAEEFK 67
Query: 439 DVNCEVVAVSVDSH---FSHLAWINTPRKNGGLGHMNIALLSDLTKQISRDYGVLLEGPG 609
+NC+V+ SVD + WINTP+K GGLG MNI L+SD + I++DYGVL G
Sbjct: 68 KLNCQVIGASVDLTSVIWLGNLWINTPKKQGGLGPMNIPLISDPKRTIAQDYGVLKADEG 127
Query: 610 LALRGLFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQFVETHGEVCPANWTPDSPTI 789
++ RGLFIID G+++ +++NDLPVGRSV+ETLRLV+AFQF + HGEVCPA W P S TI
Sbjct: 128 ISFRGLFIIDDKGILRQITINDLPVGRSVDETLRLVQAFQFTDKHGEVCPAGWKPGSDTI 187
Query: 790 KPHPTDSKEYFEK 828
KP SKEYF K
Sbjct: 188 KPDVQKSKEYFSK 200
>ref|XP_003128086.1| PREDICTED: peroxiredoxin-1-like isoform 1 [Sus scrofa].
Length = 202
Score = 243 bits (621), Expect = 1e-64
Identities = 117/193 (60%), Positives = 147/193 (76%), Gaps = 4/193 (2%)
Frame = +1
Query: 262 VTQHAPYFKGTAVV-NGEFKELSLDDYKGKYLVLFFYPLDFTFVCPTEIIAFSDKANEFH 438
+ AP+FK TAV+ +G+FK++SL DYKGKY+V FFYPLDFTFVCPTEIIAFS++A EF
Sbjct: 8 IGHRAPHFKATAVMPDGQFKDISLSDYKGKYVVFFFYPLDFTFVCPTEIIAFSERAEEFK 67
Query: 439 DVNCEVVAVSVDSH---FSHLAWINTPRKNGGLGHMNIALLSDLTKQISRDYGVLLEGPG 609
+NC+V+ SVD + WINTP+K GGLG MNI L+SD + I++DYGVL G
Sbjct: 68 KLNCQVIGASVDLTSVIWLGNLWINTPKKQGGLGPMNIPLISDPKRTIAQDYGVLKADEG 127
Query: 610 LALRGLFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQFVETHGEVCPANWTPDSPTI 789
++ RGLFIID G+++ +++NDLPVGRSV+ETLRLV+AFQF + HGEVCPA W P S TI
Sbjct: 128 ISFRGLFIIDDKGILRQITINDLPVGRSVDETLRLVQAFQFTDKHGEVCPAGWKPGSDTI 187
Query: 790 KPHPTDSKEYFEK 828
KP SKEYF K
Sbjct: 188 KPDVQKSKEYFSK 200
>ref|NP_999573.1| peroxiredoxin-6 [Sus scrofa].
Length = 224
Score = 64.3 bits (155), Expect = 1e-10
Identities = 52/198 (26%), Positives = 91/198 (45%), Gaps = 13/198 (6%)
Frame = +1
Query: 274 APYFKGTAVVNGEFKELSLDDYKG-KYLVLFFYPLDFTFVCPTEIIAFSDKANEFHDVNC 450
AP F+ + + D+ G + +LF +P DFT VC TE+ + A EF N
Sbjct: 11 APNFEANTTIG----RIRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAKRNV 66
Query: 451 EVVAVSVDSHFSHLAW---INTPRKNGGLGHMNIALLSDLTKQISRDYGVL------LEG 603
+++A+S+DS HLAW IN + ++ D ++ ++ G+L +G
Sbjct: 67 KMIALSIDSVEDHLAWSKDINAYNGEEPKETLPFPIIDDKSRDLAIQLGMLDPAEKDEQG 126
Query: 604 PGLALRGLFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQFVETHGEVCPANW-TPDS 780
+ R +FI P+ +K + GR+ +E LR++ + Q P +W DS
Sbjct: 127 MPVTARVVFIFGPDKKLKLSILYPATTGRNFDEILRVIISLQLTAEKRVATPVDWKNGDS 186
Query: 781 PTIKPH--PTDSKEYFEK 828
+ P+ ++K+ F K
Sbjct: 187 VMVLPNIPEEEAKKLFPK 204
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 28,008,491
Number of extensions: 850882
Number of successful extensions: 2546
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 2529
Number of HSP's successfully gapped: 9
Length of query: 353
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 253
Effective length of database: 8,854,232
Effective search space: 2240120696
Effective search space used: 2240120696
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007207
(1059 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr14 333 1e-88
>Sscrofa_Chr14
|| Length = 153851969
Score = 333 bits (168), Expect = 1e-88
Identities = 168/168 (100%)
Strand = Plus / Minus
Query: 619 agaggtctcttcataattgaccccaatggagtcatcaagcatttgagtgtcaatgatctc 678
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140604948 agaggtctcttcataattgaccccaatggagtcatcaagcatttgagtgtcaatgatctc 140604889
Query: 679 ccagtgggccgaagcgtggaagagaccctccgcttggtgaaggcgttccagtttgtggaa 738
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140604888 ccagtgggccgaagcgtggaagagaccctccgcttggtgaaggcgttccagtttgtggaa 140604829
Query: 739 acccatggagaagtctgcccagccaactggacaccggattctcctaca 786
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140604828 acccatggagaagtctgcccagccaactggacaccggattctcctaca 140604781
Score = 315 bits (159), Expect = 3e-83
Identities = 249/275 (90%), Gaps = 3/275 (1%)
Strand = Plus / Minus
Query: 787 atcaagccacatccgactgattccaaagaatactttgagaaggtccatcagtagaccatc 846
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140604471 atcaagccacatccgactgattccaaagaatactttgagaaggtccatcagtagaccatc 140604412
Query: 847 cctttgtgca-ctgccgcttccctccccagagaagaaccacagttgggatttcccgttag 905
|| ||||||| ||||||||||||||||||||||||| |||||||||||||| | ||||
Sbjct: 140604411 cc-ttgtgcacctgccgcttccctccccagagaagagccacagttgggattcacgtttag 140604353
Query: 906 catttcagaaatggatgtagaagacaaaccacctc-attatgctttgcctcctaagtatc 964
||||||||| ||| ||||||||||||| |||||| ||||||||| | |||||||||||
Sbjct: 140604352 catttcagagatgattgtagaagacaaaacacctcaattatgcttgtcttcctaagtatc 140604293
Query: 965 actttaaatgttttggttttgtaacatggcccaaggctttttaaatatggttagttactt 1024
||||||||||||||| ||||||||||| | ||||||||||| |||||||||||||||||
Sbjct: 140604292 actttaaatgttttgtttttgtaacattggccaaggcttttaaaatatggttagttacta 140604233
Query: 1025 acagggagaatcccctacgggtgatgtagggctgg 1059
||||| || ||| |||| ||||||||| ||||||
Sbjct: 140604232 acaggaggagtcctctactggtgatgtatggctgg 140604198
Score = 281 bits (142), Expect = 4e-73
Identities = 142/142 (100%)
Strand = Plus / Minus
Query: 239 gttcttcccaccattcccctgccgtcacccagcatgcgccctattttaagggcacagccg 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140611490 gttcttcccaccattcccctgccgtcacccagcatgcgccctattttaagggcacagccg 140611431
Query: 299 ttgtcaatggagagttcaaagaactaagccttgatgactataaggggaaatacttggtgc 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140611430 ttgtcaatggagagttcaaagaactaagccttgatgactataaggggaaatacttggtgc 140611371
Query: 359 tcttcttctatcctttggattt 380
||||||||||||||||||||||
Sbjct: 140611370 tcttcttctatcctttggattt 140611349
Score = 276 bits (139), Expect = 2e-71
Identities = 139/139 (100%)
Strand = Plus / Minus
Query: 102 ggttatccgacatgtgagtgccgttccttggggcatttctgcctctgcagcccttaggcc 161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140613038 ggttatccgacatgtgagtgccgttccttggggcatttctgcctctgcagcccttaggcc 140612979
Query: 162 tgctccttctcgaagaacatgcttgacaagtgtgctgtggtctggttccagtcaagcaaa 221
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140612978 tgctccttctcgaagaacatgcttgacaagtgtgctgtggtctggttccagtcaagcaaa 140612919
Query: 222 attcgcctttagcaccagt 240
|||||||||||||||||||
Sbjct: 140612918 attcgcctttagcaccagt 140612900
Score = 270 bits (136), Expect = 1e-69
Identities = 136/136 (100%)
Strand = Plus / Minus
Query: 381 cacctttgtgtgtcctacagaaattattgctttcagtgacaaagccaatgaatttcatga 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140610328 cacctttgtgtgtcctacagaaattattgctttcagtgacaaagccaatgaatttcatga 140610269
Query: 441 tgtgaattgtgaagttgttgccgtgtcagtggattcccacttcagccatctggcttggat 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140610268 tgtgaattgtgaagttgttgccgtgtcagtggattcccacttcagccatctggcttggat 140610209
Query: 501 aaatacaccaaggaag 516
||||||||||||||||
Sbjct: 140610208 aaatacaccaaggaag 140610193
Score = 202 bits (102), Expect = 3e-49
Identities = 105/106 (99%)
Strand = Plus / Minus
Query: 515 agaatggcggtttgggccacatgaacattgcgctcctgtcggatttgaccaagcaaattt 574
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 140608830 agaatggcggtttgggccacatgaacattgctctcctgtcggatttgaccaagcaaattt 140608771
Query: 575 cccgagactacggtgtgctgttagaaggtcccggtcttgccctgag 620
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140608770 cccgagactacggtgtgctgttagaaggtcccggtcttgccctgag 140608725
Score = 79.8 bits (40), Expect = 3e-12
Identities = 43/44 (97%)
Strand = Plus / Minus
Query: 1 cttctttgcttctctggcccgaggccccagggcgcaccgaagat 44
|||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 140614893 cttctttgcttctctggcccgaggccccagtgcgcaccgaagat 140614850
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 29,627,054
Number of extensions: 140
Number of successful extensions: 140
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 138
Number of HSP's successfully gapped: 7
Length of query: 1059
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1038
Effective length of database: 2,808,413,156
Effective search space: 2915132855928
Effective search space used: 2915132855928
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)