Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007317
(1507 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001068605.1| NADH dehydrogenase [ubiquinone] iron-sulfur ... 944 0.0
>ref|NP_001068605.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial
precursor [Bos taurus].
Length = 463
Score = 944 bits (2440), Expect = 0.0
Identities = 454/463 (98%), Positives = 459/463 (99%)
Frame = +2
Query: 29 MAALRALCSLRGVAAQVLRPGAGARLPIQPSRGARQWQPDVEWAEQFGGAVMYPTKETAH 208
MAALRALC LRG AAQVLRPGAG RLPIQPSRGARQWQPDVEWAEQ+GGAVMYPTKETAH
Sbjct: 1 MAALRALCRLRGAAAQVLRPGAGVRLPIQPSRGARQWQPDVEWAEQYGGAVMYPTKETAH 60
Query: 209 WKPPPWNDVDPPKDTLVSNLTLNFGPQHPAAHGVLRLVMELSGEMVRKCDPHIGLLHRGT 388
WKPPPWNDVDPPKDTLVSNLTLNFGPQHPAAHGVLRLVMELSGEMVRKCDPHIGLLHRGT
Sbjct: 61 WKPPPWNDVDPPKDTLVSNLTLNFGPQHPAAHGVLRLVMELSGEMVRKCDPHIGLLHRGT 120
Query: 389 EKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNIQPPPRAQWIRVLFGEITRL 568
EKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNIQPPPRAQWIRVLFGEITRL
Sbjct: 121 EKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNIQPPPRAQWIRVLFGEITRL 180
Query: 569 LNHIMAVTTHALDIGAMTPFFWMFEEREKMFEFYERVSGARMHAAYIRPGGVHQDLPLGL 748
LNHIMAVTTHALDIGAMTPFFWMFEEREKMFEFYERVSGARMHAAY+RPGGVHQDLPLGL
Sbjct: 181 LNHIMAVTTHALDIGAMTPFFWMFEEREKMFEFYERVSGARMHAAYVRPGGVHQDLPLGL 240
Query: 749 LDDIYEFSKNFSFRIDELEEMLTNNRIWRNRTVDIGVVTAEDALNYGFSGVMLRGSGIQW 928
+DDIYEFSKNFS RIDELEEMLTNNRIWRNRTVDIG+VTAEDALNYGFSGVMLRGSGIQW
Sbjct: 241 MDDIYEFSKNFSLRIDELEEMLTNNRIWRNRTVDIGIVTAEDALNYGFSGVMLRGSGIQW 300
Query: 929 DLRKTQPYDVYDQVEFDVPIGSRGDCYDRYLCRVEEMRQSLRIISQCLNKMPPGEIKVDD 1108
DLRKTQPYDVYDQVEFDVPIGSRGDCYDRYLCRVEEMRQS+RIISQCLNKMPPGEIKVDD
Sbjct: 301 DLRKTQPYDVYDQVEFDVPIGSRGDCYDRYLCRVEEMRQSIRIISQCLNKMPPGEIKVDD 360
Query: 1109 AKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGATYTAIEAPKGEFGVYLVSDGSSRPY 1288
AKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGATYTAIEAPKGEFGVYLVSDGSSRPY
Sbjct: 361 AKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGATYTAIEAPKGEFGVYLVSDGSSRPY 420
Query: 1289 RCKIKAPGFAHLAGLDKMSKGHMLADVVAIIGTQDIVFGEVDR 1417
RCKIKAPGFAHLAGLDKMSKGHMLADVVAIIGTQDIVFGEVDR
Sbjct: 421 RCKIKAPGFAHLAGLDKMSKGHMLADVVAIIGTQDIVFGEVDR 463
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 66,665,225
Number of extensions: 2019134
Number of successful extensions: 6729
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6691
Number of HSP's successfully gapped: 1
Length of query: 502
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 396
Effective length of database: 14,174,046
Effective search space: 5612922216
Effective search space used: 5612922216
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007317
(1507 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_536138.2| PREDICTED: similar to NADH-ubiquinone oxidoredu... 932 0.0
Alignment gi|XP_860254.1| PREDICTED: similar to NADH-ubiquinone oxidoredu... 900 0.0
Alignment gi|XP_860220.1| PREDICTED: similar to NADH dehydrogenase (ubiqu... 358 8e-99
>ref|XP_536138.2| PREDICTED: similar to NADH-ubiquinone oxidoreductase 49 kDa subunit,
mitochondrial precursor (Complex I-49KD) (CI-49KD)
isoform 2 [Canis familiaris].
Length = 463
Score = 932 bits (2409), Expect = 0.0
Identities = 448/463 (96%), Positives = 456/463 (98%)
Frame = +2
Query: 29 MAALRALCSLRGVAAQVLRPGAGARLPIQPSRGARQWQPDVEWAEQFGGAVMYPTKETAH 208
MAALRAL SLRG AAQ LR GAG RLP+QPSRGARQWQPDVEWAEQFGGAVMYPTKETAH
Sbjct: 1 MAALRALRSLRGAAAQALRSGAGGRLPLQPSRGARQWQPDVEWAEQFGGAVMYPTKETAH 60
Query: 209 WKPPPWNDVDPPKDTLVSNLTLNFGPQHPAAHGVLRLVMELSGEMVRKCDPHIGLLHRGT 388
WKPPPWNDVDPPKDT+V+NLTLNFGPQHPAAHGVLRLVMELSGEMVRKCDPHIGLLHRGT
Sbjct: 61 WKPPPWNDVDPPKDTMVTNLTLNFGPQHPAAHGVLRLVMELSGEMVRKCDPHIGLLHRGT 120
Query: 389 EKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNIQPPPRAQWIRVLFGEITRL 568
EKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNIQPPPRAQWIRVLFGEITRL
Sbjct: 121 EKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNIQPPPRAQWIRVLFGEITRL 180
Query: 569 LNHIMAVTTHALDIGAMTPFFWMFEEREKMFEFYERVSGARMHAAYIRPGGVHQDLPLGL 748
LNHIMAVTTHALDIGAMTPFFWMFEEREKMFEFYERVSGARMHAAY+RPGGVHQDLPLGL
Sbjct: 181 LNHIMAVTTHALDIGAMTPFFWMFEEREKMFEFYERVSGARMHAAYVRPGGVHQDLPLGL 240
Query: 749 LDDIYEFSKNFSFRIDELEEMLTNNRIWRNRTVDIGVVTAEDALNYGFSGVMLRGSGIQW 928
+DDIYEFSKNFS R+DELEEMLTNNRIW+NRTVDIGVVTAEDALNYGFSGVMLRGSGIQW
Sbjct: 241 MDDIYEFSKNFSLRVDELEEMLTNNRIWKNRTVDIGVVTAEDALNYGFSGVMLRGSGIQW 300
Query: 929 DLRKTQPYDVYDQVEFDVPIGSRGDCYDRYLCRVEEMRQSLRIISQCLNKMPPGEIKVDD 1108
DLRKTQPYDVYDQV+FDVPIGSRGDCYDRYLCRVEEMRQSLRII QCLNKMPPGEIKVDD
Sbjct: 301 DLRKTQPYDVYDQVDFDVPIGSRGDCYDRYLCRVEEMRQSLRIIEQCLNKMPPGEIKVDD 360
Query: 1109 AKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGATYTAIEAPKGEFGVYLVSDGSSRPY 1288
AKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGATYTAIEAPKGEFGVYLVSDGSSRPY
Sbjct: 361 AKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGATYTAIEAPKGEFGVYLVSDGSSRPY 420
Query: 1289 RCKIKAPGFAHLAGLDKMSKGHMLADVVAIIGTQDIVFGEVDR 1417
RCKIKAPGFAHLAGLDKMSKGHMLADVVAIIGTQDIVFGEVDR
Sbjct: 421 RCKIKAPGFAHLAGLDKMSKGHMLADVVAIIGTQDIVFGEVDR 463
>ref|XP_860254.1| PREDICTED: similar to NADH-ubiquinone oxidoreductase 49 kDa subunit,
mitochondrial precursor (Complex I-49KD) (CI-49KD)
isoform 4 [Canis familiaris].
Length = 451
Score = 900 bits (2325), Expect = 0.0
Identities = 437/463 (94%), Positives = 444/463 (95%)
Frame = +2
Query: 29 MAALRALCSLRGVAAQVLRPGAGARLPIQPSRGARQWQPDVEWAEQFGGAVMYPTKETAH 208
MAALRAL SLRG AAQ LR GAG RLP+QPSRGARQWQPDVEWAEQFGGAVMYPTKETAH
Sbjct: 1 MAALRALRSLRGAAAQALRSGAGGRLPLQPSRGARQWQPDVEWAEQFGGAVMYPTKETAH 60
Query: 209 WKPPPWNDVDPPKDTLVSNLTLNFGPQHPAAHGVLRLVMELSGEMVRKCDPHIGLLHRGT 388
WKPPPWNDVDPPKDT+V+NLTLNFGPQHPAAHGVLRLVMELSGEMVRKCDPHIGLLHRGT
Sbjct: 61 WKPPPWNDVDPPKDTMVTNLTLNFGPQHPAAHGVLRLVMELSGEMVRKCDPHIGLLHRGT 120
Query: 389 EKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNIQPPPRAQWIRVLFGEITRL 568
EKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNIQPPPRAQWIRVLFGEITRL
Sbjct: 121 EKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNIQPPPRAQWIRVLFGEITRL 180
Query: 569 LNHIMAVTTHALDIGAMTPFFWMFEEREKMFEFYERVSGARMHAAYIRPGGVHQDLPLGL 748
LNHIMAVTTHALDIGAMTPFFWMFEEREKMFEFYERVSGARMHAAY+RPGGVHQ
Sbjct: 181 LNHIMAVTTHALDIGAMTPFFWMFEEREKMFEFYERVSGARMHAAYVRPGGVHQ------ 234
Query: 749 LDDIYEFSKNFSFRIDELEEMLTNNRIWRNRTVDIGVVTAEDALNYGFSGVMLRGSGIQW 928
FSKNFS R+DELEEMLTNNRIW+NRTVDIGVVTAEDALNYGFSGVMLRGSGIQW
Sbjct: 235 ------FSKNFSLRVDELEEMLTNNRIWKNRTVDIGVVTAEDALNYGFSGVMLRGSGIQW 288
Query: 929 DLRKTQPYDVYDQVEFDVPIGSRGDCYDRYLCRVEEMRQSLRIISQCLNKMPPGEIKVDD 1108
DLRKTQPYDVYDQV+FDVPIGSRGDCYDRYLCRVEEMRQSLRII QCLNKMPPGEIKVDD
Sbjct: 289 DLRKTQPYDVYDQVDFDVPIGSRGDCYDRYLCRVEEMRQSLRIIEQCLNKMPPGEIKVDD 348
Query: 1109 AKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGATYTAIEAPKGEFGVYLVSDGSSRPY 1288
AKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGATYTAIEAPKGEFGVYLVSDGSSRPY
Sbjct: 349 AKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGATYTAIEAPKGEFGVYLVSDGSSRPY 408
Query: 1289 RCKIKAPGFAHLAGLDKMSKGHMLADVVAIIGTQDIVFGEVDR 1417
RCKIKAPGFAHLAGLDKMSKGHMLADVVAIIGTQDIVFGEVDR
Sbjct: 409 RCKIKAPGFAHLAGLDKMSKGHMLADVVAIIGTQDIVFGEVDR 451
>ref|XP_860220.1| PREDICTED: similar to NADH dehydrogenase (ubiquinone) Fe-S protein 2
(predicted) isoform 3 [Canis familiaris].
Length = 178
Score = 358 bits (919), Expect = 8e-99
Identities = 173/175 (98%), Positives = 174/175 (99%)
Frame = +2
Query: 893 SGVMLRGSGIQWDLRKTQPYDVYDQVEFDVPIGSRGDCYDRYLCRVEEMRQSLRIISQCL 1072
SGVMLRGSGIQWDLRKTQPYDVYDQV+FDVPIGSRGDCYDRYLCRVEEMRQSLRII QCL
Sbjct: 4 SGVMLRGSGIQWDLRKTQPYDVYDQVDFDVPIGSRGDCYDRYLCRVEEMRQSLRIIEQCL 63
Query: 1073 NKMPPGEIKVDDAKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGATYTAIEAPKGEFG 1252
NKMPPGEIKVDDAKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGATYTAIEAPKGEFG
Sbjct: 64 NKMPPGEIKVDDAKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGATYTAIEAPKGEFG 123
Query: 1253 VYLVSDGSSRPYRCKIKAPGFAHLAGLDKMSKGHMLADVVAIIGTQDIVFGEVDR 1417
VYLVSDGSSRPYRCKIKAPGFAHLAGLDKMSKGHMLADVVAIIGTQDIVFGEVDR
Sbjct: 124 VYLVSDGSSRPYRCKIKAPGFAHLAGLDKMSKGHMLADVVAIIGTQDIVFGEVDR 178
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 69,459,116
Number of extensions: 2065772
Number of successful extensions: 7001
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 6798
Number of HSP's successfully gapped: 3
Length of query: 502
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 395
Effective length of database: 15,307,552
Effective search space: 6046483040
Effective search space used: 6046483040
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007317
(1507 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_004541.1| NADH dehydrogenase [ubiquinone] iron-sulfur pro... 930 0.0
Alignment gi|NP_001159631.1| NADH dehydrogenase [ubiquinone] iron-sulfur ... 913 0.0
>ref|NP_004541.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial
isoform 1 precursor [Homo sapiens].
Length = 463
Score = 930 bits (2403), Expect = 0.0
Identities = 442/463 (95%), Positives = 457/463 (98%)
Frame = +2
Query: 29 MAALRALCSLRGVAAQVLRPGAGARLPIQPSRGARQWQPDVEWAEQFGGAVMYPTKETAH 208
MAALRALC RGVAAQVLRPGAG RLPIQPSRG RQWQPDVEWA+QFGGAVMYP+KETAH
Sbjct: 1 MAALRALCGFRGVAAQVLRPGAGVRLPIQPSRGVRQWQPDVEWAQQFGGAVMYPSKETAH 60
Query: 209 WKPPPWNDVDPPKDTLVSNLTLNFGPQHPAAHGVLRLVMELSGEMVRKCDPHIGLLHRGT 388
WKPPPWNDVDPPKDT+V N+TLNFGPQHPAAHGVLRLVMELSGEMVRKCDPHIGLLHRGT
Sbjct: 61 WKPPPWNDVDPPKDTIVKNITLNFGPQHPAAHGVLRLVMELSGEMVRKCDPHIGLLHRGT 120
Query: 389 EKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNIQPPPRAQWIRVLFGEITRL 568
EKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNI+PPPRAQWIRVLFGEITRL
Sbjct: 121 EKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNIRPPPRAQWIRVLFGEITRL 180
Query: 569 LNHIMAVTTHALDIGAMTPFFWMFEEREKMFEFYERVSGARMHAAYIRPGGVHQDLPLGL 748
LNHIMAVTTHALD+GAMTPFFW+FEEREKMFEFYERVSGARMHAAYIRPGGVHQDLPLGL
Sbjct: 181 LNHIMAVTTHALDLGAMTPFFWLFEEREKMFEFYERVSGARMHAAYIRPGGVHQDLPLGL 240
Query: 749 LDDIYEFSKNFSFRIDELEEMLTNNRIWRNRTVDIGVVTAEDALNYGFSGVMLRGSGIQW 928
+DDIY+FSKNFS R+DELEE+LTNNRIWRNRT+DIGVVTAE+ALNYGFSGVMLRGSGIQW
Sbjct: 241 MDDIYQFSKNFSLRLDELEELLTNNRIWRNRTIDIGVVTAEEALNYGFSGVMLRGSGIQW 300
Query: 929 DLRKTQPYDVYDQVEFDVPIGSRGDCYDRYLCRVEEMRQSLRIISQCLNKMPPGEIKVDD 1108
DLRKTQPYDVYDQVEFDVP+GSRGDCYDRYLCRVEEMRQSLRII+QCLNKMPPGEIKVDD
Sbjct: 301 DLRKTQPYDVYDQVEFDVPVGSRGDCYDRYLCRVEEMRQSLRIIAQCLNKMPPGEIKVDD 360
Query: 1109 AKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGATYTAIEAPKGEFGVYLVSDGSSRPY 1288
AKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGATYTAIEAPKGEFGVYLVSDGSSRPY
Sbjct: 361 AKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGATYTAIEAPKGEFGVYLVSDGSSRPY 420
Query: 1289 RCKIKAPGFAHLAGLDKMSKGHMLADVVAIIGTQDIVFGEVDR 1417
RCKIKAPGFAHLAGLDKMSKGHMLADVVAIIGTQDIVFGEVDR
Sbjct: 421 RCKIKAPGFAHLAGLDKMSKGHMLADVVAIIGTQDIVFGEVDR 463
>ref|NP_001159631.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial
isoform 2 precursor [Homo sapiens].
Length = 457
Score = 913 bits (2360), Expect = 0.0
Identities = 434/457 (94%), Positives = 450/457 (98%)
Frame = +2
Query: 29 MAALRALCSLRGVAAQVLRPGAGARLPIQPSRGARQWQPDVEWAEQFGGAVMYPTKETAH 208
MAALRALC RGVAAQVLRPGAG RLPIQPSRG RQWQPDVEWA+QFGGAVMYP+KETAH
Sbjct: 1 MAALRALCGFRGVAAQVLRPGAGVRLPIQPSRGVRQWQPDVEWAQQFGGAVMYPSKETAH 60
Query: 209 WKPPPWNDVDPPKDTLVSNLTLNFGPQHPAAHGVLRLVMELSGEMVRKCDPHIGLLHRGT 388
WKPPPWNDVDPPKDT+V N+TLNFGPQHPAAHGVLRLVMELSGEMVRKCDPHIGLLHRGT
Sbjct: 61 WKPPPWNDVDPPKDTIVKNITLNFGPQHPAAHGVLRLVMELSGEMVRKCDPHIGLLHRGT 120
Query: 389 EKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNIQPPPRAQWIRVLFGEITRL 568
EKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNI+PPPRAQWIRVLFGEITRL
Sbjct: 121 EKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNIRPPPRAQWIRVLFGEITRL 180
Query: 569 LNHIMAVTTHALDIGAMTPFFWMFEEREKMFEFYERVSGARMHAAYIRPGGVHQDLPLGL 748
LNHIMAVTTHALD+GAMTPFFW+FEEREKMFEFYERVSGARMHAAYIRPGGVHQDLPLGL
Sbjct: 181 LNHIMAVTTHALDLGAMTPFFWLFEEREKMFEFYERVSGARMHAAYIRPGGVHQDLPLGL 240
Query: 749 LDDIYEFSKNFSFRIDELEEMLTNNRIWRNRTVDIGVVTAEDALNYGFSGVMLRGSGIQW 928
+DDIY+FSKNFS R+DELEE+LTNNRIWRNRT+DIGVVTAE+ALNYGFSGVMLRGSGIQW
Sbjct: 241 MDDIYQFSKNFSLRLDELEELLTNNRIWRNRTIDIGVVTAEEALNYGFSGVMLRGSGIQW 300
Query: 929 DLRKTQPYDVYDQVEFDVPIGSRGDCYDRYLCRVEEMRQSLRIISQCLNKMPPGEIKVDD 1108
DLRKTQPYDVYDQVEFDVP+GSRGDCYDRYLCRVEEMRQSLRII+QCLNKMPPGEIKVDD
Sbjct: 301 DLRKTQPYDVYDQVEFDVPVGSRGDCYDRYLCRVEEMRQSLRIIAQCLNKMPPGEIKVDD 360
Query: 1109 AKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGATYTAIEAPKGEFGVYLVSDGSSRPY 1288
AKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGATYTAIEAPKGEFGVYLVSDGSSRPY
Sbjct: 361 AKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGATYTAIEAPKGEFGVYLVSDGSSRPY 420
Query: 1289 RCKIKAPGFAHLAGLDKMSKGHMLADVVAIIGTQDIV 1399
RCKIKAPGFAHLAGLDKMSKGHMLADVVAIIGT+ IV
Sbjct: 421 RCKIKAPGFAHLAGLDKMSKGHMLADVVAIIGTRPIV 457
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 68,182,035
Number of extensions: 2042927
Number of successful extensions: 6378
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 6361
Number of HSP's successfully gapped: 2
Length of query: 502
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 395
Effective length of database: 14,770,016
Effective search space: 5834156320
Effective search space used: 5834156320
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007317
(1507 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_694704.1| NADH dehydrogenase [ubiquinone] iron-sulfur pro... 911 0.0
>ref|NP_694704.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial
precursor [Mus musculus].
Length = 463
Score = 911 bits (2355), Expect = 0.0
Identities = 439/463 (94%), Positives = 450/463 (97%)
Frame = +2
Query: 29 MAALRALCSLRGVAAQVLRPGAGARLPIQPSRGARQWQPDVEWAEQFGGAVMYPTKETAH 208
MAALRAL LRGV A VLRPG+G RLP QPSRGARQWQPD+EWAEQF GAVMYP+KETAH
Sbjct: 1 MAALRALRCLRGVGAPVLRPGSGIRLPSQPSRGARQWQPDIEWAEQFSGAVMYPSKETAH 60
Query: 209 WKPPPWNDVDPPKDTLVSNLTLNFGPQHPAAHGVLRLVMELSGEMVRKCDPHIGLLHRGT 388
WKPPPWNDVD K+ V+N+TLNFGPQHPAAHGVLRLV+ELSGEMVRKCDPHIGLLHRGT
Sbjct: 61 WKPPPWNDVDILKEKAVTNMTLNFGPQHPAAHGVLRLVLELSGEMVRKCDPHIGLLHRGT 120
Query: 389 EKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNIQPPPRAQWIRVLFGEITRL 568
EKLIEYKTYLQALPYFDRLDYVSMMCNEQAYS+AVEKLLNIQPPPRAQWIRVLFGEITR+
Sbjct: 121 EKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSIAVEKLLNIQPPPRAQWIRVLFGEITRI 180
Query: 569 LNHIMAVTTHALDIGAMTPFFWMFEEREKMFEFYERVSGARMHAAYIRPGGVHQDLPLGL 748
LNHIMAVTTHALDIGAMTPFFWMFEEREKMFEFYERVSGARMHAAYIRPGGVHQDLPLGL
Sbjct: 181 LNHIMAVTTHALDIGAMTPFFWMFEEREKMFEFYERVSGARMHAAYIRPGGVHQDLPLGL 240
Query: 749 LDDIYEFSKNFSFRIDELEEMLTNNRIWRNRTVDIGVVTAEDALNYGFSGVMLRGSGIQW 928
LDDIYEFSKNFS RIDE+EEMLTNNRIWRNRTVDIGVVTAEDALNYGFSGVMLRGSGIQW
Sbjct: 241 LDDIYEFSKNFSLRIDEVEEMLTNNRIWRNRTVDIGVVTAEDALNYGFSGVMLRGSGIQW 300
Query: 929 DLRKTQPYDVYDQVEFDVPIGSRGDCYDRYLCRVEEMRQSLRIISQCLNKMPPGEIKVDD 1108
DLRKTQPYDVYDQVEFDVPIGSRGDCYDRYLCRVEEMRQSLRII QCLNKMPPGEIKVDD
Sbjct: 301 DLRKTQPYDVYDQVEFDVPIGSRGDCYDRYLCRVEEMRQSLRIIEQCLNKMPPGEIKVDD 360
Query: 1109 AKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGATYTAIEAPKGEFGVYLVSDGSSRPY 1288
AKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGATYTAIEAPKGEFGVYLVSDGSSRPY
Sbjct: 361 AKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGATYTAIEAPKGEFGVYLVSDGSSRPY 420
Query: 1289 RCKIKAPGFAHLAGLDKMSKGHMLADVVAIIGTQDIVFGEVDR 1417
RCKIKAPGFAHLAGLDKMSKGHMLADVVAIIGTQDIVFGE+DR
Sbjct: 421 RCKIKAPGFAHLAGLDKMSKGHMLADVVAIIGTQDIVFGEIDR 463
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 57,616,510
Number of extensions: 1706091
Number of successful extensions: 5324
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5304
Number of HSP's successfully gapped: 1
Length of query: 502
Length of database: 15,617,559
Length adjustment: 106
Effective length of query: 396
Effective length of database: 12,433,743
Effective search space: 4923762228
Effective search space used: 4923762228
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007317
(1507 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001927701.2| PREDICTED: NADH dehydrogenase [ubiquinone] i... 968 0.0
Alignment gi|XP_003355143.1| PREDICTED: NADH dehydrogenase [ubiquinone] i... 681 0.0
>ref|XP_001927701.2| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 2,
mitochondrial [Sus scrofa].
Length = 473
Score = 968 bits (2503), Expect = 0.0
Identities = 469/469 (100%), Positives = 469/469 (100%)
Frame = +2
Query: 11 SLWRGKMAALRALCSLRGVAAQVLRPGAGARLPIQPSRGARQWQPDVEWAEQFGGAVMYP 190
SLWRGKMAALRALCSLRGVAAQVLRPGAGARLPIQPSRGARQWQPDVEWAEQFGGAVMYP
Sbjct: 5 SLWRGKMAALRALCSLRGVAAQVLRPGAGARLPIQPSRGARQWQPDVEWAEQFGGAVMYP 64
Query: 191 TKETAHWKPPPWNDVDPPKDTLVSNLTLNFGPQHPAAHGVLRLVMELSGEMVRKCDPHIG 370
TKETAHWKPPPWNDVDPPKDTLVSNLTLNFGPQHPAAHGVLRLVMELSGEMVRKCDPHIG
Sbjct: 65 TKETAHWKPPPWNDVDPPKDTLVSNLTLNFGPQHPAAHGVLRLVMELSGEMVRKCDPHIG 124
Query: 371 LLHRGTEKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNIQPPPRAQWIRVLF 550
LLHRGTEKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNIQPPPRAQWIRVLF
Sbjct: 125 LLHRGTEKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNIQPPPRAQWIRVLF 184
Query: 551 GEITRLLNHIMAVTTHALDIGAMTPFFWMFEEREKMFEFYERVSGARMHAAYIRPGGVHQ 730
GEITRLLNHIMAVTTHALDIGAMTPFFWMFEEREKMFEFYERVSGARMHAAYIRPGGVHQ
Sbjct: 185 GEITRLLNHIMAVTTHALDIGAMTPFFWMFEEREKMFEFYERVSGARMHAAYIRPGGVHQ 244
Query: 731 DLPLGLLDDIYEFSKNFSFRIDELEEMLTNNRIWRNRTVDIGVVTAEDALNYGFSGVMLR 910
DLPLGLLDDIYEFSKNFSFRIDELEEMLTNNRIWRNRTVDIGVVTAEDALNYGFSGVMLR
Sbjct: 245 DLPLGLLDDIYEFSKNFSFRIDELEEMLTNNRIWRNRTVDIGVVTAEDALNYGFSGVMLR 304
Query: 911 GSGIQWDLRKTQPYDVYDQVEFDVPIGSRGDCYDRYLCRVEEMRQSLRIISQCLNKMPPG 1090
GSGIQWDLRKTQPYDVYDQVEFDVPIGSRGDCYDRYLCRVEEMRQSLRIISQCLNKMPPG
Sbjct: 305 GSGIQWDLRKTQPYDVYDQVEFDVPIGSRGDCYDRYLCRVEEMRQSLRIISQCLNKMPPG 364
Query: 1091 EIKVDDAKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGATYTAIEAPKGEFGVYLVSD 1270
EIKVDDAKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGATYTAIEAPKGEFGVYLVSD
Sbjct: 365 EIKVDDAKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGATYTAIEAPKGEFGVYLVSD 424
Query: 1271 GSSRPYRCKIKAPGFAHLAGLDKMSKGHMLADVVAIIGTQDIVFGEVDR 1417
GSSRPYRCKIKAPGFAHLAGLDKMSKGHMLADVVAIIGTQDIVFGEVDR
Sbjct: 425 GSSRPYRCKIKAPGFAHLAGLDKMSKGHMLADVVAIIGTQDIVFGEVDR 473
>ref|XP_003355143.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 2,
mitochondrial-like [Sus scrofa].
Length = 334
Score = 681 bits (1757), Expect = 0.0
Identities = 332/332 (100%), Positives = 332/332 (100%)
Frame = +2
Query: 422 ALPYFDRLDYVSMMCNEQAYSLAVEKLLNIQPPPRAQWIRVLFGEITRLLNHIMAVTTHA 601
ALPYFDRLDYVSMMCNEQAYSLAVEKLLNIQPPPRAQWIRVLFGEITRLLNHIMAVTTHA
Sbjct: 3 ALPYFDRLDYVSMMCNEQAYSLAVEKLLNIQPPPRAQWIRVLFGEITRLLNHIMAVTTHA 62
Query: 602 LDIGAMTPFFWMFEEREKMFEFYERVSGARMHAAYIRPGGVHQDLPLGLLDDIYEFSKNF 781
LDIGAMTPFFWMFEEREKMFEFYERVSGARMHAAYIRPGGVHQDLPLGLLDDIYEFSKNF
Sbjct: 63 LDIGAMTPFFWMFEEREKMFEFYERVSGARMHAAYIRPGGVHQDLPLGLLDDIYEFSKNF 122
Query: 782 SFRIDELEEMLTNNRIWRNRTVDIGVVTAEDALNYGFSGVMLRGSGIQWDLRKTQPYDVY 961
SFRIDELEEMLTNNRIWRNRTVDIGVVTAEDALNYGFSGVMLRGSGIQWDLRKTQPYDVY
Sbjct: 123 SFRIDELEEMLTNNRIWRNRTVDIGVVTAEDALNYGFSGVMLRGSGIQWDLRKTQPYDVY 182
Query: 962 DQVEFDVPIGSRGDCYDRYLCRVEEMRQSLRIISQCLNKMPPGEIKVDDAKVSPPKRAEM 1141
DQVEFDVPIGSRGDCYDRYLCRVEEMRQSLRIISQCLNKMPPGEIKVDDAKVSPPKRAEM
Sbjct: 183 DQVEFDVPIGSRGDCYDRYLCRVEEMRQSLRIISQCLNKMPPGEIKVDDAKVSPPKRAEM 242
Query: 1142 KTSMESLIHHFKLYTEGYQVPPGATYTAIEAPKGEFGVYLVSDGSSRPYRCKIKAPGFAH 1321
KTSMESLIHHFKLYTEGYQVPPGATYTAIEAPKGEFGVYLVSDGSSRPYRCKIKAPGFAH
Sbjct: 243 KTSMESLIHHFKLYTEGYQVPPGATYTAIEAPKGEFGVYLVSDGSSRPYRCKIKAPGFAH 302
Query: 1322 LAGLDKMSKGHMLADVVAIIGTQDIVFGEVDR 1417
LAGLDKMSKGHMLADVVAIIGTQDIVFGEVDR
Sbjct: 303 LAGLDKMSKGHMLADVVAIIGTQDIVFGEVDR 334
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 42,959,484
Number of extensions: 1294425
Number of successful extensions: 4024
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4019
Number of HSP's successfully gapped: 2
Length of query: 502
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 399
Effective length of database: 8,779,541
Effective search space: 3503036859
Effective search space used: 3503036859
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007317
(1507 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr04 383 e-103
>Sscrofa_Chr04
|| Length = 143465943
Score = 383 bits (193), Expect = e-103
Identities = 193/193 (100%)
Strand = Plus / Minus
Query: 230 gatgtggaccctccaaaggacacattggtgtcgaacctaaccctgaactttgggccccag 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97109944 gatgtggaccctccaaaggacacattggtgtcgaacctaaccctgaactttgggccccag 97109885
Query: 290 cacccagcagcccatggagtcctgcggctagtgatggaactgagtggggagatggtgcgg 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97109884 cacccagcagcccatggagtcctgcggctagtgatggaactgagtggggagatggtgcgg 97109825
Query: 350 aagtgcgatcctcacattgggctgctgcaccgaggcactgagaagctcattgaatacaag 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97109824 aagtgcgatcctcacattgggctgctgcaccgaggcactgagaagctcattgaatacaag 97109765
Query: 410 acctatctgcagg 422
|||||||||||||
Sbjct: 97109764 acctatctgcagg 97109752
Score = 262 bits (132), Expect = 5e-67
Identities = 132/132 (100%)
Strand = Plus / Minus
Query: 1013 aggtacctatgtcgggtggaggaaatgcgccagtcccttcgaatcatctcacagtgtctg 1072
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97105278 aggtacctatgtcgggtggaggaaatgcgccagtcccttcgaatcatctcacagtgtctg 97105219
Query: 1073 aacaaaatgcctcccggggagatcaaggttgatgatgccaaagtgtctccacctaaacgc 1132
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97105218 aacaaaatgcctcccggggagatcaaggttgatgatgccaaagtgtctccacctaaacgc 97105159
Query: 1133 gcagagatgaag 1144
||||||||||||
Sbjct: 97105158 gcagagatgaag 97105147
Score = 252 bits (127), Expect = 5e-64
Identities = 127/127 (100%)
Strand = Plus / Minus
Query: 1381 aggtacccaagatattgtgtttggagaagtagatcggtgagcaggggagcagcattgact 1440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97103871 aggtacccaagatattgtgtttggagaagtagatcggtgagcaggggagcagcattgact 97103812
Query: 1441 ctccccacctacacactccatctgcggagcttgtctgtcgttggaagtggatgggactgt 1500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97103811 ctccccacctacacactccatctgcggagcttgtctgtcgttggaagtggatgggactgt 97103752
Query: 1501 gtatgta 1507
|||||||
Sbjct: 97103751 gtatgta 97103745
Score = 246 bits (124), Expect = 3e-62
Identities = 124/124 (100%)
Strand = Plus / Minus
Query: 893 agtggggtgatgctccggggttcaggcatccagtgggacctgcggaagacccagccctat 952
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97106527 agtggggtgatgctccggggttcaggcatccagtgggacctgcggaagacccagccctat 97106468
Query: 953 gacgtttatgaccaggtggagtttgatgttcctattggctctcgaggtgactgctatgat 1012
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97106467 gacgtttatgaccaggtggagtttgatgttcctattggctctcgaggtgactgctatgat 97106408
Query: 1013 aggt 1016
||||
Sbjct: 97106407 aggt 97106404
Score = 246 bits (124), Expect = 3e-62
Identities = 124/124 (100%)
Strand = Plus / Minus
Query: 419 caggcccttccatactttgaccggctagactatgtgtccatgatgtgtaacgaacaggcc 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97107948 caggcccttccatactttgaccggctagactatgtgtccatgatgtgtaacgaacaggcc 97107889
Query: 479 tattcactggcggtggagaagttgctcaacatccagcctcctcctcgggcacagtggatc 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97107888 tattcactggcggtggagaagttgctcaacatccagcctcctcctcgggcacagtggatc 97107829
Query: 539 cgag 542
||||
Sbjct: 97107828 cgag 97107825
Score = 240 bits (121), Expect = 2e-60
Identities = 121/121 (100%)
Strand = Plus / Minus
Query: 3 ctttccgcagtctgtggcggggcaagatggcggcgctcagagcactgtgcagcctccggg 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97113749 ctttccgcagtctgtggcggggcaagatggcggcgctcagagcactgtgcagcctccggg 97113690
Query: 63 gcgtcgcggcccaggtgctgcggcccggggctggggcccgactaccgattcagcctagca 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97113689 gcgtcgcggcccaggtgctgcggcccggggctggggcccgactaccgattcagcctagca 97113630
Query: 123 g 123
|
Sbjct: 97113629 g 97113629
Score = 228 bits (115), Expect = 7e-57
Identities = 115/115 (100%)
Strand = Plus / Minus
Query: 541 agtgctctttggagaaatcacacgacttttgaaccacatcatggctgtgaccacacatgc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97107639 agtgctctttggagaaatcacacgacttttgaaccacatcatggctgtgaccacacatgc 97107580
Query: 601 cctggatatcggggccatgacacctttcttctggatgtttgaagaaagggagaag 655
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97107579 cctggatatcggggccatgacacctttcttctggatgtttgaagaaagggagaag 97107525
Score = 218 bits (110), Expect = 7e-54
Identities = 110/110 (100%)
Strand = Plus / Minus
Query: 121 cagaggggctcggcaatggcagccagatgtggaatgggcagagcagtttgggggagctgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97112839 cagaggggctcggcaatggcagccagatgtggaatgggcagagcagtttgggggagctgt 97112780
Query: 181 catgtaccccactaaggaaacagcccactggaaacctccaccttggaatg 230
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97112779 catgtaccccactaaggaaacagcccactggaaacctccaccttggaatg 97112730
Score = 196 bits (99), Expect = 2e-47
Identities = 99/99 (100%)
Strand = Plus / Minus
Query: 1143 agacttctatggagtcactgattcatcactttaagttgtatactgagggctaccaagtac 1202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97104613 agacttctatggagtcactgattcatcactttaagttgtatactgagggctaccaagtac 97104554
Query: 1203 ctccaggggccacatacactgccattgaggctcctaagg 1241
|||||||||||||||||||||||||||||||||||||||
Sbjct: 97104553 ctccaggggccacatacactgccattgaggctcctaagg 97104515
Score = 174 bits (88), Expect = 9e-41
Identities = 88/88 (100%)
Strand = Plus / Minus
Query: 807 agatgctgaccaacaataggatctggcgaaatcggacagtcgacattggggttgtcacag 866
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97106816 agatgctgaccaacaataggatctggcgaaatcggacagtcgacattggggttgtcacag 97106757
Query: 867 cggaagacgcacttaactatggttttag 894
||||||||||||||||||||||||||||
Sbjct: 97106756 cggaagacgcacttaactatggttttag 97106729
Score = 172 bits (87), Expect = 4e-40
Identities = 87/87 (100%)
Strand = Plus / Minus
Query: 1239 agggagagtttggggtgtacctggtgtctgatggcagcagccgcccttatcgatgcaaga 1298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97104341 agggagagtttggggtgtacctggtgtctgatggcagcagccgcccttatcgatgcaaga 97104282
Query: 1299 tcaaagctcctggttttgctcacttgg 1325
|||||||||||||||||||||||||||
Sbjct: 97104281 tcaaagctcctggttttgctcacttgg 97104255
Score = 159 bits (80), Expect = 5e-36
Identities = 80/80 (100%)
Strand = Plus / Minus
Query: 729 aggacctaccccttgggcttctggatgacatttatgagttttctaagaacttctcttttc 788
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97107025 aggacctaccccttgggcttctggatgacatttatgagttttctaagaacttctcttttc 97106966
Query: 789 ggattgatgagttggaggag 808
||||||||||||||||||||
Sbjct: 97106965 ggattgatgagttggaggag 97106946
Score = 155 bits (78), Expect = 8e-35
Identities = 78/78 (100%)
Strand = Plus / Minus
Query: 654 agatgttcgagttctatgagcgagtgtccggagctcgcatgcatgctgcttacatccggc 713
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97107278 agatgttcgagttctatgagcgagtgtccggagctcgcatgcatgctgcttacatccggc 97107219
Query: 714 caggaggcgtgcaccagg 731
||||||||||||||||||
Sbjct: 97107218 caggaggcgtgcaccagg 97107201
Score = 125 bits (63), Expect = 8e-26
Identities = 63/63 (100%)
Strand = Plus / Minus
Query: 1324 ggctggtttggacaagatgtctaagggacacatgttggcggacgtcgttgccatcatagg 1383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97104126 ggctggtttggacaagatgtctaagggacacatgttggcggacgtcgttgccatcatagg 97104067
Query: 1384 tac 1386
|||
Sbjct: 97104066 tac 97104064
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 37,554,110
Number of extensions: 222
Number of successful extensions: 222
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 222
Number of HSP's successfully gapped: 14
Length of query: 1507
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1486
Effective length of database: 2,808,413,156
Effective search space: 4173301949816
Effective search space used: 4173301949816
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)