Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007407
(1984 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001095454.1| fatty aldehyde dehydrogenase [Bos taurus]. 605 e-173
Alignment gi|NP_001159985.1| aldehyde dehydrogenase, dimeric NADP-preferr... 469 e-132
Alignment gi|NP_001068986.1| aldehyde dehydrogenase family 3 member B1 [B... 374 e-103
Alignment gi|XP_002699413.1| PREDICTED: similar to aldehyde dehydrogenase... 370 e-102
Alignment gi|XP_585724.2| PREDICTED: similar to aldehyde dehydrogenase 3B... 370 e-102
Alignment gi|XP_002696563.1| PREDICTED: aldehyde dehydrogenase family 1 s... 133 5e-31
Alignment gi|XP_583647.3| PREDICTED: aldehyde dehydrogenase family 1 subf... 133 5e-31
Alignment gi|NP_776664.1| retinal dehydrogenase 1 [Bos taurus]. 124 4e-28
Alignment gi|NP_001069094.1| aldehyde dehydrogenase family 8 member A1 [B... 118 2e-26
Alignment gi|NP_001179664.1| succinate-semialdehyde dehydrogenase, mitoch... 118 2e-26
>ref|NP_001095454.1| fatty aldehyde dehydrogenase [Bos taurus].
Length = 485
Score = 605 bits (1561), Expect = e-173
Identities = 293/347 (84%), Positives = 318/347 (91%)
Frame = +1
Query: 4 LSIQPLXXXXXXXXXXXXKPSEISENTAKILAKLLPQYLDQDLYAVINGGVEETTKLLEQ 183
L+IQPL KPSE+SENTAK+LAKLLPQYLDQDLYAV+ GGVEETT+LL+Q
Sbjct: 117 LTIQPLIGAIAAGNAVIIKPSEVSENTAKLLAKLLPQYLDQDLYAVVTGGVEETTELLKQ 176
Query: 184 RFDHILYTGSTAVGKIVMEAAAKHLTPVTLELGGKSPCYIDPDCDLDVACRRIAWGKYMN 363
RFDHILYTG+T VGKIVM+AAAKHLTPVTLELGGKSPCY+D DCDLDVACRRIAWGK+MN
Sbjct: 177 RFDHILYTGNTTVGKIVMQAAAKHLTPVTLELGGKSPCYVDRDCDLDVACRRIAWGKFMN 236
Query: 364 CGQTCIAPDYVLCEPSLQDQVVQKMKEAVKEFYGDNIKDSPDYERIVNLRHFKRIQSLLE 543
CGQTCIAPDYVLCEPSLQD +VQK++EAVK FYG+N+K+SPDYERIVNLRHFKRIQSLLE
Sbjct: 237 CGQTCIAPDYVLCEPSLQDLIVQKVQEAVKGFYGENVKESPDYERIVNLRHFKRIQSLLE 296
Query: 544 GQKIAFGGETDEATRYIAPTILTDVDPEAKVMREEIFGPILPIVPVKNADEAVKFINERE 723
GQKIAFGGE DEATRYIAPTILTDVDP KVM+EEIFGPILPIVPVKNADEA++FINERE
Sbjct: 297 GQKIAFGGEMDEATRYIAPTILTDVDPGTKVMQEEIFGPILPIVPVKNADEAIQFINERE 356
Query: 724 KPLAFYVFSRNNKLIKRMIEATSSGGVTGNDVIMHFMLSSLPFGGVGSSGMGAYHGKHSF 903
KPLAFYVFS N+KLIKRMI+ TSSGGVTGNDVIMHF LSSLPFGGVGSSGMGAYHGKHSF
Sbjct: 357 KPLAFYVFSHNSKLIKRMIDGTSSGGVTGNDVIMHFTLSSLPFGGVGSSGMGAYHGKHSF 416
Query: 904 ETFSHLRPCLLKSLKGEGANKLRYPPNSQSKVDWAKFFFLKRVSKGR 1044
+TFSH RPCLLK+LK EG N+LRYPPNSQSKVDWAKFF LKR +K R
Sbjct: 417 DTFSHQRPCLLKTLKREGMNQLRYPPNSQSKVDWAKFFMLKRFNKER 463
>ref|NP_001159985.1| aldehyde dehydrogenase, dimeric NADP-preferring [Bos taurus].
Length = 453
Score = 469 bits (1207), Expect = e-132
Identities = 216/327 (66%), Positives = 271/327 (82%)
Frame = +1
Query: 4 LSIQPLXXXXXXXXXXXXKPSEISENTAKILAKLLPQYLDQDLYAVINGGVEETTKLLEQ 183
L+IQP+ KPSE+SENTA +LA +LPQYLDQDLY VINGGV ETT++L++
Sbjct: 120 LTIQPMVGAIAAGNAVVLKPSELSENTASLLATILPQYLDQDLYPVINGGVAETTEVLKE 179
Query: 184 RFDHILYTGSTAVGKIVMEAAAKHLTPVTLELGGKSPCYIDPDCDLDVACRRIAWGKYMN 363
RFDHIL+TGST VG++VM AAAKHLTPVTLELGGK+PCY+D DCDLD+ACRRIAWGK+MN
Sbjct: 180 RFDHILFTGSTGVGRVVMMAAAKHLTPVTLELGGKNPCYVDKDCDLDIACRRIAWGKFMN 239
Query: 364 CGQTCIAPDYVLCEPSLQDQVVQKMKEAVKEFYGDNIKDSPDYERIVNLRHFKRIQSLLE 543
GQTC+APDY+LC+PS+Q QVV+K+K+++KEFYG++ K S DY RI+N RHF+R+ LLE
Sbjct: 240 SGQTCVAPDYILCDPSIQSQVVEKLKKSLKEFYGEDAKKSRDYGRIINSRHFQRVMGLLE 299
Query: 544 GQKIAFGGETDEATRYIAPTILTDVDPEAKVMREEIFGPILPIVPVKNADEAVKFINERE 723
GQK+ +GG D TRYIAPTILTDVDPE+ VM+EE+FGP+LPI+ V++ +EA++FI +RE
Sbjct: 300 GQKVTYGGTGDATTRYIAPTILTDVDPESPVMQEEVFGPVLPIMCVRSLEEAIQFITQRE 359
Query: 724 KPLAFYVFSRNNKLIKRMIEATSSGGVTGNDVIMHFMLSSLPFGGVGSSGMGAYHGKHSF 903
KPLA YVFS N+K+IK+MI TSSGGVT NDV++H + SLP+GGVG SGMG+YHG+ SF
Sbjct: 360 KPLALYVFSPNDKVIKKMIAETSSGGVTANDVVVHISVHSLPYGGVGDSGMGSYHGRKSF 419
Query: 904 ETFSHLRPCLLKSLKGEGANKLRYPPN 984
ETFSH R CL++ L E K RYPP+
Sbjct: 420 ETFSHRRSCLVRPLLNEETLKARYPPS 446
>ref|NP_001068986.1| aldehyde dehydrogenase family 3 member B1 [Bos taurus].
Length = 468
Score = 374 bits (960), Expect = e-103
Identities = 179/328 (54%), Positives = 237/328 (72%)
Frame = +1
Query: 4 LSIQPLXXXXXXXXXXXXKPSEISENTAKILAKLLPQYLDQDLYAVINGGVEETTKLLEQ 183
LS+ PL KPSEIS+NT K+LA++LP+YLDQ +AV+ GG +ET +LLE
Sbjct: 120 LSLGPLVGALAAGNCVVLKPSEISKNTEKVLAEVLPRYLDQSCFAVVLGGPQETGRLLEH 179
Query: 184 RFDHILYTGSTAVGKIVMEAAAKHLTPVTLELGGKSPCYIDPDCDLDVACRRIAWGKYMN 363
+FD+I +TG+ VGKIVM AAAKHLTPVTLELGGK+PCY+D +CD R+A+ + N
Sbjct: 180 KFDYIFFTGNPQVGKIVMTAAAKHLTPVTLELGGKNPCYVDDNCDPQTVANRVAFFRCFN 239
Query: 364 CGQTCIAPDYVLCEPSLQDQVVQKMKEAVKEFYGDNIKDSPDYERIVNLRHFKRIQSLLE 543
GQTC+APDYVLC P +Q Q+V ++ A+ FYGD+ + SP+ RI++ +HF+R++ LL
Sbjct: 240 AGQTCVAPDYVLCSPEMQAQLVPALQSAITRFYGDDPQSSPNLGRIISQKHFQRLRGLLS 299
Query: 544 GQKIAFGGETDEATRYIAPTILTDVDPEAKVMREEIFGPILPIVPVKNADEAVKFINERE 723
++ GG++DE YIAPT+L DV VM+EEIFGPILPIV V++ +A+ FIN RE
Sbjct: 300 CGRVVIGGQSDECDLYIAPTVLVDVQETDPVMQEEIFGPILPIVNVRSLGQAIDFINRRE 359
Query: 724 KPLAFYVFSRNNKLIKRMIEATSSGGVTGNDVIMHFMLSSLPFGGVGSSGMGAYHGKHSF 903
KPLA Y FS +++++KR++ TSSGG GND MH L+SLPFGGVGSSGMG YHGK SF
Sbjct: 360 KPLALYAFSNSSQVVKRVLAQTSSGGFCGNDGFMHLTLASLPFGGVGSSGMGNYHGKFSF 419
Query: 904 ETFSHLRPCLLKSLKGEGANKLRYPPNS 987
+TFSH R CLL+ E +RYPP++
Sbjct: 420 DTFSHHRACLLRRPGLEKIYAIRYPPHT 447
>ref|XP_002699413.1| PREDICTED: similar to aldehyde dehydrogenase 3B1 [Bos taurus].
Length = 486
Score = 370 bits (950), Expect = e-102
Identities = 181/338 (53%), Positives = 237/338 (70%), Gaps = 3/338 (0%)
Frame = +1
Query: 4 LSIQPLXXXXXXXXXXXXKPSEISENTAKILAKLLPQYLDQDLYAVINGGVEETTKLLEQ 183
LS+ PL KPSEIS++T K+LAK+LP+YLDQ +AV+ GG EET +LLE
Sbjct: 140 LSLGPLVGALAAGNCVVLKPSEISKSTMKVLAKVLPRYLDQSCFAVVLGGPEETGRLLEH 199
Query: 184 RFDHILYTGSTAVGKIVMEAAAKHLTPVTLELGGKSPCYIDPDCDLDVACRRIAWGKYMN 363
+FD+I +TGS VGKIVM AAAKHLTPVTLELGGK+PCY+D +CD R+A+ + N
Sbjct: 200 KFDYIFFTGSPRVGKIVMAAAAKHLTPVTLELGGKNPCYVDDNCDPQTVANRVAFFRCFN 259
Query: 364 CGQTCIAPDYVLCEPSLQDQVVQKMKEAVKEFYGDNIKDSPDYERIVNLRHFKRIQSLLE 543
GQTC+APDYVLC P +Q ++V ++ A+ FYG++ + SPD RI++ +HF+R++ LL
Sbjct: 260 TGQTCVAPDYVLCSPEMQAKLVPALQSAITRFYGNDPQRSPDLGRIISQKHFQRLRGLLS 319
Query: 544 GQKIAFGGETDEATRYIAPTILTDVDPEAKVMREEIFGPILPIVPVKNADEAVKFINERE 723
++ GG++DE+ YIAPT+L DV VM+EEIFGPILPIV V++ D+A+ FIN RE
Sbjct: 320 CGRVVIGGQSDESDLYIAPTVLVDVKETEPVMQEEIFGPILPIVNVRSLDQAIDFINRRE 379
Query: 724 KPLAFYVFSRNNKLIKRMIEATSSGGVTGNDVIMHFMLSSLPFGGVGSSGMGAYHGKHSF 903
KPLA Y FS +++ +K+M++ TSSG GN L+SLPFGGVG SGMG YHGK SF
Sbjct: 380 KPLALYAFSNSSQAVKQMLDRTSSGNFAGNQGFTFLTLTSLPFGGVGQSGMGRYHGKFSF 439
Query: 904 ETFSHLRPCLLKSLKGEGANKLRYPPNS---QSKVDWA 1008
+TFSH R CLL E N +RYPP S Q + WA
Sbjct: 440 DTFSHHRACLLSHPGLEMLNNIRYPPYSDFEQKLITWA 477
>ref|XP_585724.2| PREDICTED: similar to aldehyde dehydrogenase 3B1 isoform 1 [Bos
taurus].
Length = 486
Score = 370 bits (950), Expect = e-102
Identities = 181/338 (53%), Positives = 237/338 (70%), Gaps = 3/338 (0%)
Frame = +1
Query: 4 LSIQPLXXXXXXXXXXXXKPSEISENTAKILAKLLPQYLDQDLYAVINGGVEETTKLLEQ 183
LS+ PL KPSEIS++T K+LAK+LP+YLDQ +AV+ GG EET +LLE
Sbjct: 140 LSLGPLVGALAAGNCVVLKPSEISKSTMKVLAKVLPRYLDQSCFAVVLGGPEETGRLLEH 199
Query: 184 RFDHILYTGSTAVGKIVMEAAAKHLTPVTLELGGKSPCYIDPDCDLDVACRRIAWGKYMN 363
+FD+I +TGS VGKIVM AAAKHLTPVTLELGGK+PCY+D +CD R+A+ + N
Sbjct: 200 KFDYIFFTGSPRVGKIVMAAAAKHLTPVTLELGGKNPCYVDDNCDPQTVANRVAFFRCFN 259
Query: 364 CGQTCIAPDYVLCEPSLQDQVVQKMKEAVKEFYGDNIKDSPDYERIVNLRHFKRIQSLLE 543
GQTC+APDYVLC P +Q ++V ++ A+ FYG++ + SPD RI++ +HF+R++ LL
Sbjct: 260 TGQTCVAPDYVLCSPEMQAKLVPALQSAITRFYGNDPQRSPDLGRIISQKHFQRLRGLLS 319
Query: 544 GQKIAFGGETDEATRYIAPTILTDVDPEAKVMREEIFGPILPIVPVKNADEAVKFINERE 723
++ GG++DE+ YIAPT+L DV VM+EEIFGPILPIV V++ D+A+ FIN RE
Sbjct: 320 CGRVVIGGQSDESDLYIAPTVLVDVKETEPVMQEEIFGPILPIVNVRSLDQAIDFINRRE 379
Query: 724 KPLAFYVFSRNNKLIKRMIEATSSGGVTGNDVIMHFMLSSLPFGGVGSSGMGAYHGKHSF 903
KPLA Y FS +++ +K+M++ TSSG GN L+SLPFGGVG SGMG YHGK SF
Sbjct: 380 KPLALYAFSNSSQAVKQMLDRTSSGNFAGNQGFTFLTLTSLPFGGVGQSGMGRYHGKFSF 439
Query: 904 ETFSHLRPCLLKSLKGEGANKLRYPPNS---QSKVDWA 1008
+TFSH R CLL E N +RYPP S Q + WA
Sbjct: 440 DTFSHHRACLLSHPGLEMLNNIRYPPYSDFEQKLITWA 477
>ref|XP_002696563.1| PREDICTED: aldehyde dehydrogenase family 1 subfamily A3-like [Bos
taurus].
Length = 537
Score = 133 bits (335), Expect = 5e-31
Identities = 100/307 (32%), Positives = 150/307 (48%), Gaps = 13/307 (4%)
Frame = +1
Query: 58 KPSEISENTAKILAKLLPQYLDQDLYAVINGGVEETTKLLEQRFDHI---LYTGSTAVGK 228
KP+E + TA L L+ + I G T HI +TGST VGK
Sbjct: 229 KPAEQTPLTALYLGSLIKEVGFPPGVVNIVPGFGPTVGAAISSHPHINKIAFTGSTEVGK 288
Query: 229 IVMEAAA-KHLTPVTLELGGKSPCYI--DPDCDLDVACRRIAWGKYMNCGQTCIAPDYVL 399
+V EAA+ +L VTLELGGK+PC + D DCDL V C G + N GQ C A V
Sbjct: 289 LVKEAASHSNLKRVTLELGGKNPCIVCADADCDLAVECAH--QGVFFNQGQCCTAASRVF 346
Query: 400 CEPSLQDQVVQKMKE-AVKEFYGDNIKDSPDYERIVNLRHFKRIQSLLE-----GQKIAF 561
E + D+ V++ E A K GD + ++ + F +I L+E G K+
Sbjct: 347 VEEQVYDEFVRRSVEYAKKRPVGDPFDVRTEQGPQIDQKQFDKILDLIESGKKEGAKLEC 406
Query: 562 GGET-DEATRYIAPTILTDVDPEAKVMREEIFGPILPIVPVKNADEAVKFINEREKPLAF 738
GG ++ +I PT+ ++V ++ +EEIFGP+ PI+ KN +E +K N E L
Sbjct: 407 GGSAMEDRGLFIKPTVFSEVTDTMRIAKEEIFGPVQPILKFKNIEEVIKRANSLEYGLTA 466
Query: 739 YVFSRNNKLIKRMIEATSSGGVTGNDVIMHFMLSSLPFGGVGSSGMGAYHGKHSFETFSH 918
VF++N ++ A SG V N + + + PFGG SG G G+++ ++
Sbjct: 467 AVFTKNLDKALKLASALESGTVWIN--CYNAIYAQAPFGGFKMSGNGRELGEYALAEYTE 524
Query: 919 LRPCLLK 939
++ +K
Sbjct: 525 VKTVTIK 531
>ref|XP_583647.3| PREDICTED: aldehyde dehydrogenase family 1 subfamily A3-like [Bos
taurus].
Length = 537
Score = 133 bits (335), Expect = 5e-31
Identities = 100/307 (32%), Positives = 150/307 (48%), Gaps = 13/307 (4%)
Frame = +1
Query: 58 KPSEISENTAKILAKLLPQYLDQDLYAVINGGVEETTKLLEQRFDHI---LYTGSTAVGK 228
KP+E + TA L L+ + I G T HI +TGST VGK
Sbjct: 229 KPAEQTPLTALYLGSLIKEVGFPPGVVNIVPGFGPTVGAAISSHPHINKIAFTGSTEVGK 288
Query: 229 IVMEAAA-KHLTPVTLELGGKSPCYI--DPDCDLDVACRRIAWGKYMNCGQTCIAPDYVL 399
+V EAA+ +L VTLELGGK+PC + D DCDL V C G + N GQ C A V
Sbjct: 289 LVKEAASHSNLKRVTLELGGKNPCIVCADADCDLAVECAH--QGVFFNQGQCCTAASRVF 346
Query: 400 CEPSLQDQVVQKMKE-AVKEFYGDNIKDSPDYERIVNLRHFKRIQSLLE-----GQKIAF 561
E + D+ V++ E A K GD + ++ + F +I L+E G K+
Sbjct: 347 VEEQVYDEFVRRSVEYAKKRPVGDPFDVRTEQGPQIDQKQFDKILDLIESGKKEGAKLEC 406
Query: 562 GGET-DEATRYIAPTILTDVDPEAKVMREEIFGPILPIVPVKNADEAVKFINEREKPLAF 738
GG ++ +I PT+ ++V ++ +EEIFGP+ PI+ KN +E +K N E L
Sbjct: 407 GGSAMEDRGLFIKPTVFSEVTDTMRIAKEEIFGPVQPILKFKNIEEVIKRANSLEYGLTA 466
Query: 739 YVFSRNNKLIKRMIEATSSGGVTGNDVIMHFMLSSLPFGGVGSSGMGAYHGKHSFETFSH 918
VF++N ++ A SG V N + + + PFGG SG G G+++ ++
Sbjct: 467 AVFTKNLDKALKLASALESGTVWIN--CYNAIYAQAPFGGFKMSGNGRELGEYALAEYTE 524
Query: 919 LRPCLLK 939
++ +K
Sbjct: 525 VKTVTIK 531
>ref|NP_776664.1| retinal dehydrogenase 1 [Bos taurus].
Length = 501
Score = 124 bits (310), Expect = 4e-28
Identities = 81/258 (31%), Positives = 132/258 (51%), Gaps = 8/258 (3%)
Frame = +1
Query: 190 DHILYTGSTAVGKIVMEAAAK-HLTPVTLELGGKSPCYIDPDCDLDVACRRIAWGKYMNC 366
D + +TGST VGK++ EAA K +L V+LELGGKSPC + D DLD A G + +
Sbjct: 240 DKVAFTGSTEVGKLIKEAAGKSNLKRVSLELGGKSPCIVFADADLDNAVEFAHQGVFYHQ 299
Query: 367 GQTCIAPDYVLCEPSLQDQVVQKMKEAVKEF-YGDNIKDSPDYERIVNLRHFKRIQSLL- 540
GQ CIA + E S+ D+ V++ E K++ G+ + ++ +++I L+
Sbjct: 300 GQCCIAASRLFVEESIYDEFVRRSVERAKKYVLGNPLTPGVSQGPQIDKEQYEKILDLIE 359
Query: 541 ----EGQKI-AFGGETDEATRYIAPTILTDVDPEAKVMREEIFGPILPIVPVKNADEAVK 705
EG K+ GG +I PT+ +DV + ++ +EEIFGP+ I+ K+ D+ +K
Sbjct: 360 SGKKEGAKLECGGGPWGNKGYFIQPTVFSDVTDDMRIAKEEIFGPVQQIMKFKSLDDVIK 419
Query: 706 FINEREKPLAFYVFSRNNKLIKRMIEATSSGGVTGNDVIMHFMLSSLPFGGVGSSGMGAY 885
N L+ +F+ + + A SG V N + + PFGG SG G
Sbjct: 420 RANNTFYGLSAGIFTNDIDKAITVSSALQSGTVWVN--CYSVVSAQCPFGGFKMSGNGRE 477
Query: 886 HGKHSFETFSHLRPCLLK 939
G++ F ++ ++ +K
Sbjct: 478 LGEYGFHEYTEVKTVTIK 495
>ref|NP_001069094.1| aldehyde dehydrogenase family 8 member A1 [Bos taurus].
Length = 487
Score = 118 bits (295), Expect = 2e-26
Identities = 85/311 (27%), Positives = 155/311 (49%), Gaps = 17/311 (5%)
Frame = +1
Query: 58 KPSEISENTAKILAKLLPQY-LDQDLYAVINGGVEETTKLL--EQRFDHILYTGSTAVGK 228
KPSE++ TA ++ +LL + + + ++ G + L I +TGS +
Sbjct: 178 KPSELTSVTAWMMCRLLEKAGVPPGVVNIVFGTGPRVGEALVSHPEVPLISFTGSQPTAE 237
Query: 229 IVMEAAAKHLTPVTLELGGKSPCYIDPDCDLDVACRRIAWGKYMNCGQTCIAPDYVLCEP 408
+M+ +A H ++LELGGK+P I D +L + N G+ C+ + +
Sbjct: 238 RIMQLSAPHCKKLSLELGGKNPAVIFEDANLAECIPTTVRSSFANQGEICLCTSRIFVQR 297
Query: 409 SLQDQVVQKMKEAVKEF-YGDNIKDSPDYERIVNLRHFKRIQSLL-----EGQKIAFGGE 570
S+ + +++ EA + + G S D +++ H ++++S + EG +I G
Sbjct: 298 SIYSEFLKRFVEAARMWKVGIPSDPSADMGALISKAHLEKVRSYIKKARMEGAQILCGEG 357
Query: 571 TD--------EATRYIAPTILTDVDPEAKVMREEIFGPILPIVPVKNADEAVKFINEREK 726
D +A ++ PT++TDV E+ M+EEIFGP+ +VP + +E ++ N +
Sbjct: 358 VDKLNLPPRNQAGYFMLPTVITDVKDESCCMKEEIFGPVTCVVPFDSEEEVIQRANNVKY 417
Query: 727 PLAFYVFSRNNKLIKRMIEATSSGGVTGNDVIMHFMLSSLPFGGVGSSGMGAYHGKHSFE 906
LA V+S N + R+ + SG V N ++ + +LPFGG+ SSG+G K S+E
Sbjct: 418 GLAATVWSGNVGRVHRVAKKLQSGLVWTNCWLIREL--NLPFGGMKSSGVGREGAKDSYE 475
Query: 907 TFSHLRPCLLK 939
F+ ++ +K
Sbjct: 476 FFTEVKTITVK 486
>ref|NP_001179664.1| succinate-semialdehyde dehydrogenase, mitochondrial [Bos taurus].
Length = 526
Score = 118 bits (295), Expect = 2e-26
Identities = 82/303 (27%), Positives = 148/303 (48%), Gaps = 14/303 (4%)
Frame = +1
Query: 58 KPSEISENTAKILAKLLPQY-LDQDLYAVINGGVEETTKLLEQR-----FDHILYTGSTA 219
KP+E + +A LA+L Q + +Y VI ++ ++ E I +TGSTA
Sbjct: 219 KPAEDTPFSALALAELANQAGIPPGVYNVIPCSQKKAKEVGEALCTDPLVSKISFTGSTA 278
Query: 220 VGKIVMEAAAKHLTPVTLELGGKSPCYIDPDCDLDVACRRIAWGKYMNCGQTCIAPDYVL 399
GK+++ AA + V++ELGG +P + ++D A K+ N GQTC+ + L
Sbjct: 279 TGKVLLHHAANSVKRVSMELGGHAPFIVFDSANVDQAVAGAMASKFRNSGQTCVCSNRFL 338
Query: 400 CEPSLQDQVVQKMKEAVKE--FYGDNIKDSPDYERIVNLRHFKRIQ-----SLLEGQKIA 558
+ + D V+K EA+K G+ + ++N + ++++ ++ +G +
Sbjct: 339 VQSGIHDSFVKKFAEAIKTNLHVGNGFDERTTQGPLINAKAVEKVEKHVSDAISKGATVV 398
Query: 559 FGGETDEATR-YIAPTILTDVDPEAKVMREEIFGPILPIVPVKNADEAVKFINEREKPLA 735
GG+ + + PT+L++V + +EE FGP+ P++ +EAV N LA
Sbjct: 399 TGGKRHHVGKNFFEPTLLSNVTRDMLCSQEETFGPVAPVIKFNTEEEAVAIANAANVGLA 458
Query: 736 FYVFSRNNKLIKRMIEATSSGGVTGNDVIMHFMLSSLPFGGVGSSGMGAYHGKHSFETFS 915
Y +S++ I R+ E G V N+ ++ + PFGGV SG+G K+ + +
Sbjct: 459 GYFYSQDPAQIWRVAERLEVGMVGVNEGLISSV--ECPFGGVKQSGLGREGSKYGIDEYL 516
Query: 916 HLR 924
L+
Sbjct: 517 ELK 519
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 75,788,591
Number of extensions: 2241841
Number of successful extensions: 12291
Number of sequences better than 1.0e-05: 26
Number of HSP's gapped: 12123
Number of HSP's successfully gapped: 26
Length of query: 661
Length of database: 17,681,374
Length adjustment: 109
Effective length of query: 552
Effective length of database: 14,074,782
Effective search space: 7769279664
Effective search space used: 7769279664
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007407
(1984 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_536656.2| PREDICTED: similar to Fatty aldehyde dehydrogen... 605 e-173
Alignment gi|NP_001075889.1| aldehyde dehydrogenase, dimeric NADP-preferr... 467 e-131
Alignment gi|XP_864201.1| PREDICTED: similar to aldehyde dehydrogenase 3B... 384 e-106
Alignment gi|XP_533211.2| PREDICTED: similar to Aldehyde dehydrogenase 3B... 384 e-106
Alignment gi|XP_864177.1| PREDICTED: similar to Aldehyde dehydrogenase 3B... 378 e-104
Alignment gi|XP_854611.1| PREDICTED: similar to Aldehyde dehydrogenase 3B... 201 2e-51
Alignment gi|XP_545823.2| PREDICTED: similar to leucine-rich repeat kinas... 128 2e-29
Alignment gi|XP_535494.2| PREDICTED: similar to aldehyde dehydrogenase 1A... 118 2e-26
Alignment gi|XP_533525.1| PREDICTED: similar to Retinal dehydrogenase 1 (... 117 4e-26
Alignment gi|XP_533415.2| PREDICTED: similar to aldehyde dehydrogenase 8A... 114 3e-25
>ref|XP_536656.2| PREDICTED: similar to Fatty aldehyde dehydrogenase (Aldehyde
dehydrogenase, microsomal) (Aldehyde dehydrogenase family
3 member A2) [Canis familiaris].
Length = 485
Score = 605 bits (1560), Expect = e-173
Identities = 290/347 (83%), Positives = 319/347 (91%)
Frame = +1
Query: 4 LSIQPLXXXXXXXXXXXXKPSEISENTAKILAKLLPQYLDQDLYAVINGGVEETTKLLEQ 183
L+IQPL KPSE+SE TAKILA+LLP+YLDQDLY VINGGVEETT+LL+Q
Sbjct: 117 LTIQPLIGAIAAGNAVIIKPSELSEKTAKILAELLPRYLDQDLYVVINGGVEETTELLKQ 176
Query: 184 RFDHILYTGSTAVGKIVMEAAAKHLTPVTLELGGKSPCYIDPDCDLDVACRRIAWGKYMN 363
RFDHILYTG+TAVGKIVMEAAAKHLTPVTLELGGKSPCY+D DCDLD+ACRRI WGKYMN
Sbjct: 177 RFDHILYTGNTAVGKIVMEAAAKHLTPVTLELGGKSPCYVDKDCDLDIACRRITWGKYMN 236
Query: 364 CGQTCIAPDYVLCEPSLQDQVVQKMKEAVKEFYGDNIKDSPDYERIVNLRHFKRIQSLLE 543
CGQTCIAPDYVLCEPSLQ+Q+VQK+KE VKEFYG+NIK+SPDYERI+NLRHFKRI SLLE
Sbjct: 237 CGQTCIAPDYVLCEPSLQNQIVQKIKETVKEFYGENIKESPDYERIINLRHFKRILSLLE 296
Query: 544 GQKIAFGGETDEATRYIAPTILTDVDPEAKVMREEIFGPILPIVPVKNADEAVKFINERE 723
GQKIAFGGETDEATRYIAPTIL+DVDPE++VM+EEIFGPILPIVPVKNADEA+KFIN RE
Sbjct: 297 GQKIAFGGETDEATRYIAPTILSDVDPESRVMQEEIFGPILPIVPVKNADEAIKFINSRE 356
Query: 724 KPLAFYVFSRNNKLIKRMIEATSSGGVTGNDVIMHFMLSSLPFGGVGSSGMGAYHGKHSF 903
KPLAFY+FS N+KL+++MI TSSGGVT NDVIMHF LSSLPFGGVGSSGMGAYHGK+SF
Sbjct: 357 KPLAFYIFSHNDKLVRQMINGTSSGGVTANDVIMHFTLSSLPFGGVGSSGMGAYHGKYSF 416
Query: 904 ETFSHLRPCLLKSLKGEGANKLRYPPNSQSKVDWAKFFFLKRVSKGR 1044
+TFSH RPCLLKSLK EGANKLRYPPNSQSKVDWAKFF LKR +KG+
Sbjct: 417 DTFSHQRPCLLKSLKREGANKLRYPPNSQSKVDWAKFFILKRFNKGK 463
>ref|NP_001075889.1| aldehyde dehydrogenase, dimeric NADP-preferring [Canis lupus
familiaris].
Length = 453
Score = 467 bits (1202), Expect = e-131
Identities = 213/327 (65%), Positives = 276/327 (84%)
Frame = +1
Query: 4 LSIQPLXXXXXXXXXXXXKPSEISENTAKILAKLLPQYLDQDLYAVINGGVEETTKLLEQ 183
++IQP+ KPSE+SEN A +LA ++PQYLD+DLY VI+GG+ ETT+LL++
Sbjct: 120 VTIQPMVGAIAAGNAVVIKPSELSENMANLLATIIPQYLDRDLYPVISGGIPETTELLKE 179
Query: 184 RFDHILYTGSTAVGKIVMEAAAKHLTPVTLELGGKSPCYIDPDCDLDVACRRIAWGKYMN 363
RFDHILYTG+TAVGK++M AAAKHLTPVTLELGGK+PCY+D DCDLD+ACRRIAWGK+MN
Sbjct: 180 RFDHILYTGNTAVGKVIMMAAAKHLTPVTLELGGKNPCYVDKDCDLDIACRRIAWGKFMN 239
Query: 364 CGQTCIAPDYVLCEPSLQDQVVQKMKEAVKEFYGDNIKDSPDYERIVNLRHFKRIQSLLE 543
GQTC+APDY+LC+PS+Q+Q+V+K+K+A+KEFYG++ K S DY RI+N RHF+R+ L+E
Sbjct: 240 SGQTCVAPDYILCDPSIQNQIVEKLKKALKEFYGEDAKKSRDYGRIINSRHFQRVMGLME 299
Query: 544 GQKIAFGGETDEATRYIAPTILTDVDPEAKVMREEIFGPILPIVPVKNADEAVKFINERE 723
GQK+A+GG D ATRYIAPTIL DVD +++VM+EEIFGP++PIV V++ +EA++FIN+RE
Sbjct: 300 GQKVAYGGTGDAATRYIAPTILIDVDTQSQVMQEEIFGPVMPIVCVRSLEEAIQFINQRE 359
Query: 724 KPLAFYVFSRNNKLIKRMIEATSSGGVTGNDVIMHFMLSSLPFGGVGSSGMGAYHGKHSF 903
KPLA YVFS N+K+IK+MI TSSGGVT NDVI+H + SLP+GGVG+SGMG+YHGK SF
Sbjct: 360 KPLALYVFSLNDKMIKKMIAETSSGGVTANDVIVHVSVHSLPYGGVGNSGMGSYHGKKSF 419
Query: 904 ETFSHLRPCLLKSLKGEGANKLRYPPN 984
ETFSH R CL++ L + + K RYPP+
Sbjct: 420 ETFSHCRSCLVRPLLNDESLKTRYPPS 446
>ref|XP_864201.1| PREDICTED: similar to aldehyde dehydrogenase 3B1 isoform b isoform 3
[Canis familiaris].
Length = 431
Score = 384 bits (985), Expect = e-106
Identities = 182/328 (55%), Positives = 239/328 (72%)
Frame = +1
Query: 4 LSIQPLXXXXXXXXXXXXKPSEISENTAKILAKLLPQYLDQDLYAVINGGVEETTKLLEQ 183
L++ PL KPSE S +T K+LA++LP+YLDQ +AV+ GG +ET +LLE
Sbjct: 83 LTLVPLVGALAAGNCVVLKPSEFSRSTEKVLAEVLPRYLDQSCFAVVLGGPQETGQLLEH 142
Query: 184 RFDHILYTGSTAVGKIVMEAAAKHLTPVTLELGGKSPCYIDPDCDLDVACRRIAWGKYMN 363
+FD+I +TGS VG+IVM AAAKHLTPVTLELGGK+PCY+D DCD R+AW +Y N
Sbjct: 143 KFDYIFFTGSPRVGRIVMTAAAKHLTPVTLELGGKNPCYVDDDCDPQTVANRVAWFRYFN 202
Query: 364 CGQTCIAPDYVLCEPSLQDQVVQKMKEAVKEFYGDNIKDSPDYERIVNLRHFKRIQSLLE 543
CGQTC+APDYVLC P +++++ ++ A+ FYGD+ + SP R+V+ +HF+R++ LL
Sbjct: 203 CGQTCVAPDYVLCSPHTRERLLPALQSAITRFYGDDPRRSPSLGRVVSDKHFRRLRGLLG 262
Query: 544 GQKIAFGGETDEATRYIAPTILTDVDPEAKVMREEIFGPILPIVPVKNADEAVKFINERE 723
++A GG++DE RYIAPT+L DV VM+EEIFGPILPIV V + DEA+ FIN RE
Sbjct: 263 CGRVAIGGQSDEDERYIAPTVLVDVQETEPVMQEEIFGPILPIVNVGSLDEAIDFINRRE 322
Query: 724 KPLAFYVFSRNNKLIKRMIEATSSGGVTGNDVIMHFMLSSLPFGGVGSSGMGAYHGKHSF 903
KPLA Y FSR+++++KR++ TSSGG GND MH L+SLPFGGVG+SGMG+YHGK SF
Sbjct: 323 KPLALYAFSRSSQVVKRVLAQTSSGGFCGNDGFMHMTLASLPFGGVGASGMGSYHGKFSF 382
Query: 904 ETFSHLRPCLLKSLKGEGANKLRYPPNS 987
+TFSH R CLL+ E +RYPP S
Sbjct: 383 DTFSHHRACLLRRPGLEKIYSIRYPPYS 410
>ref|XP_533211.2| PREDICTED: similar to Aldehyde dehydrogenase 3B1 (Aldehyde
dehydrogenase 7) isoform 1 [Canis familiaris].
Length = 468
Score = 384 bits (985), Expect = e-106
Identities = 182/328 (55%), Positives = 239/328 (72%)
Frame = +1
Query: 4 LSIQPLXXXXXXXXXXXXKPSEISENTAKILAKLLPQYLDQDLYAVINGGVEETTKLLEQ 183
L++ PL KPSE S +T K+LA++LP+YLDQ +AV+ GG +ET +LLE
Sbjct: 120 LTLVPLVGALAAGNCVVLKPSEFSRSTEKVLAEVLPRYLDQSCFAVVLGGPQETGQLLEH 179
Query: 184 RFDHILYTGSTAVGKIVMEAAAKHLTPVTLELGGKSPCYIDPDCDLDVACRRIAWGKYMN 363
+FD+I +TGS VG+IVM AAAKHLTPVTLELGGK+PCY+D DCD R+AW +Y N
Sbjct: 180 KFDYIFFTGSPRVGRIVMTAAAKHLTPVTLELGGKNPCYVDDDCDPQTVANRVAWFRYFN 239
Query: 364 CGQTCIAPDYVLCEPSLQDQVVQKMKEAVKEFYGDNIKDSPDYERIVNLRHFKRIQSLLE 543
CGQTC+APDYVLC P +++++ ++ A+ FYGD+ + SP R+V+ +HF+R++ LL
Sbjct: 240 CGQTCVAPDYVLCSPHTRERLLPALQSAITRFYGDDPRRSPSLGRVVSDKHFRRLRGLLG 299
Query: 544 GQKIAFGGETDEATRYIAPTILTDVDPEAKVMREEIFGPILPIVPVKNADEAVKFINERE 723
++A GG++DE RYIAPT+L DV VM+EEIFGPILPIV V + DEA+ FIN RE
Sbjct: 300 CGRVAIGGQSDEDERYIAPTVLVDVQETEPVMQEEIFGPILPIVNVGSLDEAIDFINRRE 359
Query: 724 KPLAFYVFSRNNKLIKRMIEATSSGGVTGNDVIMHFMLSSLPFGGVGSSGMGAYHGKHSF 903
KPLA Y FSR+++++KR++ TSSGG GND MH L+SLPFGGVG+SGMG+YHGK SF
Sbjct: 360 KPLALYAFSRSSQVVKRVLAQTSSGGFCGNDGFMHMTLASLPFGGVGASGMGSYHGKFSF 419
Query: 904 ETFSHLRPCLLKSLKGEGANKLRYPPNS 987
+TFSH R CLL+ E +RYPP S
Sbjct: 420 DTFSHHRACLLRRPGLEKIYSIRYPPYS 447
>ref|XP_864177.1| PREDICTED: similar to Aldehyde dehydrogenase 3B1 (Aldehyde
dehydrogenase 7) isoform 2 [Canis familiaris].
Length = 472
Score = 378 bits (970), Expect = e-104
Identities = 182/332 (54%), Positives = 239/332 (71%), Gaps = 4/332 (1%)
Frame = +1
Query: 4 LSIQPLXXXXXXXXXXXXKPSEISENTAKILAKLLPQYLDQDLYAVINGGVEETTKLLEQ 183
L++ PL KPSE S +T K+LA++LP+YLDQ +AV+ GG +ET +LLE
Sbjct: 120 LTLVPLVGALAAGNCVVLKPSEFSRSTEKVLAEVLPRYLDQSCFAVVLGGPQETGQLLEH 179
Query: 184 RFDHILYTG----STAVGKIVMEAAAKHLTPVTLELGGKSPCYIDPDCDLDVACRRIAWG 351
+FD+I +TG S VG+IVM AAAKHLTPVTLELGGK+PCY+D DCD R+AW
Sbjct: 180 KFDYIFFTGKHLGSPRVGRIVMTAAAKHLTPVTLELGGKNPCYVDDDCDPQTVANRVAWF 239
Query: 352 KYMNCGQTCIAPDYVLCEPSLQDQVVQKMKEAVKEFYGDNIKDSPDYERIVNLRHFKRIQ 531
+Y NCGQTC+APDYVLC P +++++ ++ A+ FYGD+ + SP R+V+ +HF+R++
Sbjct: 240 RYFNCGQTCVAPDYVLCSPHTRERLLPALQSAITRFYGDDPRRSPSLGRVVSDKHFRRLR 299
Query: 532 SLLEGQKIAFGGETDEATRYIAPTILTDVDPEAKVMREEIFGPILPIVPVKNADEAVKFI 711
LL ++A GG++DE RYIAPT+L DV VM+EEIFGPILPIV V + DEA+ FI
Sbjct: 300 GLLGCGRVAIGGQSDEDERYIAPTVLVDVQETEPVMQEEIFGPILPIVNVGSLDEAIDFI 359
Query: 712 NEREKPLAFYVFSRNNKLIKRMIEATSSGGVTGNDVIMHFMLSSLPFGGVGSSGMGAYHG 891
N REKPLA Y FSR+++++KR++ TSSGG GND MH L+SLPFGGVG+SGMG+YHG
Sbjct: 360 NRREKPLALYAFSRSSQVVKRVLAQTSSGGFCGNDGFMHMTLASLPFGGVGASGMGSYHG 419
Query: 892 KHSFETFSHLRPCLLKSLKGEGANKLRYPPNS 987
K SF+TFSH R CLL+ E +RYPP S
Sbjct: 420 KFSFDTFSHHRACLLRRPGLEKIYSIRYPPYS 451
>ref|XP_854611.1| PREDICTED: similar to Aldehyde dehydrogenase 3B1 (Aldehyde
dehydrogenase 7) [Canis familiaris].
Length = 626
Score = 201 bits (511), Expect = 2e-51
Identities = 122/323 (37%), Positives = 168/323 (52%), Gaps = 7/323 (2%)
Frame = +1
Query: 58 KPSEISENTAKILAKLLPQYLDQDLYAVINGGVEETTKLLEQRFDHILYTGSTAVGKIVM 237
KPSE+S++T K+LA++LPQYLDQ +AV+ GG +ET +LLE +FD+I + GS VG+IVM
Sbjct: 138 KPSELSKSTEKVLAEVLPQYLDQSCFAVVLGGPQETRQLLEHKFDYIFFPGSPRVGRIVM 197
Query: 238 EAAAKHLTPVTLELGGKSPCYIDPDCDLDVACRRIAWGKYMNCGQTCIAPDYVLCEPSLQ 417
AAAKHLTPVTLELGGK+PCY+D DCD R+AW +Y NCGQTC+ PDY LC P
Sbjct: 198 TAAAKHLTPVTLELGGKNPCYVDDDCDPQTVANRVAWFRYFNCGQTCVVPDYALCSPH-- 255
Query: 418 DQVVQKMKEAVKEFYGDNIKDSPDYERIVNLRHFKRIQSLLEGQKIAFGGETDEATRYIA 597
L +R++ LL ++A GG++D R A
Sbjct: 256 -----------------------------TLGRVRRLRGLLGCGRVAIGGQSD---RTSA 283
Query: 598 PTILTDVDPEAKV----MREEIFGPILPIVPVKNADEAVKFINEREKPLAFYVFSRNNKL 765
P+++T + + + L +P+ + DE + +P L
Sbjct: 284 PSVVTQMLHQTSSGIVGGNQGFIHLTLSTLPLGSVDEPCPPLEPPPRP-------PPPSL 336
Query: 766 IKRMIEATSSGGVTGNDVIMHFMLSSLPFGGVGSSGMGAYHGKHSFETFSHLRPCLLKSL 945
+ + ND + LP +SG+G YHGK SF+TFSH R LL S
Sbjct: 337 GLALDFSKPRFSYLQNDSLSGLAFPELP--ASCNSGIGRYHGKFSFDTFSHHRASLLSSS 394
Query: 946 KGEGANKLRYPP---NSQSKVDW 1005
E N+L YPP +SQ + W
Sbjct: 395 GLEKLNELHYPPYTAHSQKLITW 417
>ref|XP_545823.2| PREDICTED: similar to leucine-rich repeat kinase 1 [Canis
familiaris].
Length = 2787
Score = 128 bits (321), Expect = 2e-29
Identities = 95/285 (33%), Positives = 139/285 (48%), Gaps = 11/285 (3%)
Frame = +1
Query: 58 KPSEISENTAKILAKLLPQYLDQDLYAVINGGVEETTKLLEQRFDHI---LYTGSTAVGK 228
KP+E + TA L L+ + I G T HI +TGST VGK
Sbjct: 444 KPAEQTPLTALYLGSLIKEVGFPPGVVNIVPGFGPTVGAAISSHPHISKIAFTGSTEVGK 503
Query: 229 IVMEAAAK-HLTPVTLELGGKSPCYIDPDCDLDVACRRIAWGKYMNCGQTCIAPDYVLCE 405
+V EAA++ +L VTLELGGK+PC + D DLD+A G + N GQ C A V E
Sbjct: 504 LVKEAASRSNLKRVTLELGGKNPCIVCADADLDLAVECAHQGVFFNQGQCCTAASRVFVE 563
Query: 406 PSLQDQVVQKMKE-AVKEFYGDNIKDSPDYERIVNLRHFKRIQSLLE-----GQKIAFGG 567
+ + V++ E A K GD + ++ + F +I L+E G K+ GG
Sbjct: 564 EQIYPEFVRRSVEYAKKRPIGDPFDIRTEQGPQIDQKQFDKILDLIESGKKEGAKLECGG 623
Query: 568 ET-DEATRYIAPTILTDVDPEAKVMREEIFGPILPIVPVKNADEAVKFINEREKPLAFYV 744
++ +I PT+ ++V ++ +EEIFGP+ PI+ KN +E +K N E L V
Sbjct: 624 SAMEDRGLFIKPTVFSEVTDTMRIAKEEIFGPVQPILKFKNIEEVIKRANSLEYGLTAAV 683
Query: 745 FSRNNKLIKRMIEATSSGGVTGNDVIMHFMLSSLPFGGVGSSGMG 879
F++N ++ A SG V N + + + PFGG SG G
Sbjct: 684 FTKNLDKALKLASALESGTVWIN--CYNAIYAQAPFGGFKMSGNG 726
>ref|XP_535494.2| PREDICTED: similar to aldehyde dehydrogenase 1A2 isoform 1 isoform 1
[Canis familiaris].
Length = 518
Score = 118 bits (295), Expect = 2e-26
Identities = 79/258 (30%), Positives = 130/258 (50%), Gaps = 8/258 (3%)
Frame = +1
Query: 190 DHILYTGSTAVGKIVMEAAAK-HLTPVTLELGGKSPCYIDPDCDLDVACRRIAWGKYMNC 366
D I +TGST VGK++ EAA + +L VTLELGGKSP I D DLD A + G + N
Sbjct: 257 DKIAFTGSTEVGKLIQEAAGRSNLKRVTLELGGKSPNIIFADADLDYAVEQAHQGVFFNQ 316
Query: 367 GQTCIAPDYVLCEPSLQDQVVQK-MKEAVKEFYGDNIKDSPDYERIVNLRHFKRIQSLL- 540
GQ C A + E S+ ++ V++ ++ A + G + + ++ + + +I L+
Sbjct: 317 GQCCTAGSRIFVEESIYEEFVRRSVERAKRRIVGSPFDPTTEQGPQIDKKQYNKILELIQ 376
Query: 541 ----EGQKIAFGGE-TDEATRYIAPTILTDVDPEAKVMREEIFGPILPIVPVKNADEAVK 705
EG K+ GG+ +I PT+ ++V + ++ +EEIFGP+ I+ K DE ++
Sbjct: 377 SGVAEGAKLECGGKGLGRKGFFIEPTVFSNVTDDMRIAKEEIFGPVQEILRFKTMDEVIE 436
Query: 706 FINEREKPLAFYVFSRNNKLIKRMIEATSSGGVTGNDVIMHFMLSSLPFGGVGSSGMGAY 885
N + L VF+ + + A +G V N + + + PFGG SG G
Sbjct: 437 RANNSDFGLVAAVFTNDINKALTVSSAMQAGTVWIN--CYNALNAQSPFGGFKMSGNGRE 494
Query: 886 HGKHSFETFSHLRPCLLK 939
G+ +S ++ +K
Sbjct: 495 MGEFGLREYSEVKTVTVK 512
>ref|XP_533525.1| PREDICTED: similar to Retinal dehydrogenase 1 (RalDH1) (RALDH 1)
(Aldehyde dehydrogenase family 1 member A1) (Aldehyde
dehydrogenase, cytosolic) (ALHDII) (ALDH-E1) isoform 1
[Canis familiaris].
Length = 501
Score = 117 bits (293), Expect = 4e-26
Identities = 79/258 (30%), Positives = 131/258 (50%), Gaps = 8/258 (3%)
Frame = +1
Query: 190 DHILYTGSTAVGKIVMEAAAK-HLTPVTLELGGKSPCYIDPDCDLDVACRRIAWGKYMNC 366
D + +TGST VGK++ EAA K +L VTLELGGKSP + D DLD A + +
Sbjct: 240 DKVAFTGSTEVGKMIKEAAGKSNLKRVTLELGGKSPFIVFADSDLDSAVEVAHQALFYHQ 299
Query: 367 GQTCIAPDYVLCEPSLQDQVVQKMKEAVKEF-YGDNIKDSPDYERIVNLRHFKRIQSLL- 540
GQ CIA + E S+ D+ V++ E K++ G+ + ++ + +++I L+
Sbjct: 300 GQCCIAASRLFVEESIYDEFVRRSVERAKKYVLGNPLTPGVSQGPQIDKKQYEKILDLIE 359
Query: 541 ----EGQKI-AFGGETDEATRYIAPTILTDVDPEAKVMREEIFGPILPIVPVKNADEAVK 705
EG K+ GG +I PT+ ++V E ++ +EEIFGP+ I+ K+ D+ +K
Sbjct: 360 SGKKEGAKLECGGGPWGNKGFFIQPTVFSNVTDEMRIAKEEIFGPVQQIMKFKSLDDVIK 419
Query: 706 FINEREKPLAFYVFSRNNKLIKRMIEATSSGGVTGNDVIMHFMLSSLPFGGVGSSGMGAY 885
N LA +F+++ + A +G V N + PFGG SG G
Sbjct: 420 RANNTHYGLAAGIFTKDIDKAITVSSALQAGTVWVN--CYSVVSPQCPFGGFKMSGNGRE 477
Query: 886 HGKHSFETFSHLRPCLLK 939
G++ + ++ ++ +K
Sbjct: 478 LGEYGLQEYTEVKMVTMK 495
>ref|XP_533415.2| PREDICTED: similar to aldehyde dehydrogenase 8A1 isoform 1 isoform 1
[Canis familiaris].
Length = 487
Score = 114 bits (286), Expect = 3e-25
Identities = 82/311 (26%), Positives = 153/311 (49%), Gaps = 17/311 (5%)
Frame = +1
Query: 58 KPSEISENTAKILAKLLPQY-LDQDLYAVINGGVEETTKLL--EQRFDHILYTGSTAVGK 228
KPSE++ TA ++ KLL + + + ++ G + L I +TGS +
Sbjct: 178 KPSELTSVTAWMMCKLLEKAGVPPGVVNIVFGTGPRVGEALVAHPEVPLISFTGSQPTAE 237
Query: 229 IVMEAAAKHLTPVTLELGGKSPCYIDPDCDLDVACRRIAWGKYMNCGQTCIAPDYVLCEP 408
++ +A H ++LELGGK+P I D +L+ + N G+ C+ + +
Sbjct: 238 RIIHLSAPHCKKLSLELGGKNPAIIFEDANLEECIPTTVKSSFANQGEICLCTSRIFVQR 297
Query: 409 SLQDQVVQKMKEAVKEF-YGDNIKDSPDYERIVNLRHFKRIQSLL-----EGQKIAFGGE 570
S+ ++ ++K EA + + G +++ H ++++S + EG +I G
Sbjct: 298 SIYEEFLEKFVEATRRWKVGIPSDPLASMGALISKAHLEKVRSYIKKARSEGAQILCGEG 357
Query: 571 TD--------EATRYIAPTILTDVDPEAKVMREEIFGPILPIVPVKNADEAVKFINEREK 726
D + ++ PT++T + E+ M+EEIFGP+ +VP + +E ++ N +
Sbjct: 358 VDTLSLPAKNQGGYFMLPTVITHIKDESCCMKEEIFGPVTCVVPFDSEEEVIQRANSVKY 417
Query: 727 PLAFYVFSRNNKLIKRMIEATSSGGVTGNDVIMHFMLSSLPFGGVGSSGMGAYHGKHSFE 906
LA V+S N + R+ + SG V N ++ + +LPFGG+ SSG+G GK S+E
Sbjct: 418 GLAATVWSCNVGRVHRVAKKLQSGLVWTNCWLIREL--NLPFGGMKSSGVGREGGKDSYE 475
Query: 907 TFSHLRPCLLK 939
F+ ++ +K
Sbjct: 476 FFTEVKTITIK 486
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 79,495,966
Number of extensions: 2340710
Number of successful extensions: 12806
Number of sequences better than 1.0e-05: 27
Number of HSP's gapped: 12593
Number of HSP's successfully gapped: 28
Length of query: 661
Length of database: 18,874,504
Length adjustment: 109
Effective length of query: 552
Effective length of database: 15,240,880
Effective search space: 8412965760
Effective search space used: 8412965760
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007407
(1984 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_000373.1| fatty aldehyde dehydrogenase isoform 2 [Homo sa... 599 e-171
Alignment gi|NP_001026976.1| fatty aldehyde dehydrogenase isoform 1 [Homo... 599 e-171
Alignment gi|NP_001128640.1| aldehyde dehydrogenase, dimeric NADP-preferr... 473 e-133
Alignment gi|NP_001128639.1| aldehyde dehydrogenase, dimeric NADP-preferr... 473 e-133
Alignment gi|NP_000682.3| aldehyde dehydrogenase, dimeric NADP-preferring... 473 e-133
Alignment gi|NP_001154945.1| aldehyde dehydrogenase family 3 member B1 is... 392 e-109
Alignment gi|NP_001025181.1| aldehyde dehydrogenase family 3 member B1 is... 392 e-109
Alignment gi|NP_000685.1| aldehyde dehydrogenase family 3 member B1 isofo... 392 e-109
Alignment gi|NP_001026786.1| aldehyde dehydrogenase family 3 member B2 [H... 362 e-100
Alignment gi|NP_000686.2| aldehyde dehydrogenase family 3 member B2 [Homo... 362 e-100
>ref|NP_000373.1| fatty aldehyde dehydrogenase isoform 2 [Homo sapiens].
Length = 485
Score = 599 bits (1544), Expect = e-171
Identities = 289/345 (83%), Positives = 311/345 (90%)
Frame = +1
Query: 4 LSIQPLXXXXXXXXXXXXKPSEISENTAKILAKLLPQYLDQDLYAVINGGVEETTKLLEQ 183
L+IQPL KPSE+SENTAKILAKLLPQYLDQDLY VINGGVEETT+LL+Q
Sbjct: 117 LTIQPLIGAIAAGNAVIIKPSELSENTAKILAKLLPQYLDQDLYIVINGGVEETTELLKQ 176
Query: 184 RFDHILYTGSTAVGKIVMEAAAKHLTPVTLELGGKSPCYIDPDCDLDVACRRIAWGKYMN 363
RFDHI YTG+TAVGKIVMEAAAKHLTPVTLELGGKSPCYID DCDLD+ CRRI WGKYMN
Sbjct: 177 RFDHIFYTGNTAVGKIVMEAAAKHLTPVTLELGGKSPCYIDKDCDLDIVCRRITWGKYMN 236
Query: 364 CGQTCIAPDYVLCEPSLQDQVVQKMKEAVKEFYGDNIKDSPDYERIVNLRHFKRIQSLLE 543
CGQTCIAPDY+LCE SLQ+Q+V K+KE VKEFYG+NIK+SPDYERI+NLRHFKRI SLLE
Sbjct: 237 CGQTCIAPDYILCEASLQNQIVWKIKETVKEFYGENIKESPDYERIINLRHFKRILSLLE 296
Query: 544 GQKIAFGGETDEATRYIAPTILTDVDPEAKVMREEIFGPILPIVPVKNADEAVKFINERE 723
GQKIAFGGETDEATRYIAPT+LTDVDP+ KVM+EEIFGPILPIVPVKN DEA+ FINERE
Sbjct: 297 GQKIAFGGETDEATRYIAPTVLTDVDPKTKVMQEEIFGPILPIVPVKNVDEAINFINERE 356
Query: 724 KPLAFYVFSRNNKLIKRMIEATSSGGVTGNDVIMHFMLSSLPFGGVGSSGMGAYHGKHSF 903
KPLA YVFS N+KLIKRMI+ TSSGGVTGNDVIMHF L+S PFGGVGSSGMGAYHGKHSF
Sbjct: 357 KPLALYVFSHNHKLIKRMIDETSSGGVTGNDVIMHFTLNSFPFGGVGSSGMGAYHGKHSF 416
Query: 904 ETFSHLRPCLLKSLKGEGANKLRYPPNSQSKVDWAKFFFLKRVSK 1038
+TFSH RPCLLKSLK EGANKLRYPPNSQSKVDW KFF LKR +K
Sbjct: 417 DTFSHQRPCLLKSLKREGANKLRYPPNSQSKVDWGKFFLLKRFNK 461
>ref|NP_001026976.1| fatty aldehyde dehydrogenase isoform 1 [Homo sapiens].
Length = 508
Score = 599 bits (1544), Expect = e-171
Identities = 289/345 (83%), Positives = 311/345 (90%)
Frame = +1
Query: 4 LSIQPLXXXXXXXXXXXXKPSEISENTAKILAKLLPQYLDQDLYAVINGGVEETTKLLEQ 183
L+IQPL KPSE+SENTAKILAKLLPQYLDQDLY VINGGVEETT+LL+Q
Sbjct: 117 LTIQPLIGAIAAGNAVIIKPSELSENTAKILAKLLPQYLDQDLYIVINGGVEETTELLKQ 176
Query: 184 RFDHILYTGSTAVGKIVMEAAAKHLTPVTLELGGKSPCYIDPDCDLDVACRRIAWGKYMN 363
RFDHI YTG+TAVGKIVMEAAAKHLTPVTLELGGKSPCYID DCDLD+ CRRI WGKYMN
Sbjct: 177 RFDHIFYTGNTAVGKIVMEAAAKHLTPVTLELGGKSPCYIDKDCDLDIVCRRITWGKYMN 236
Query: 364 CGQTCIAPDYVLCEPSLQDQVVQKMKEAVKEFYGDNIKDSPDYERIVNLRHFKRIQSLLE 543
CGQTCIAPDY+LCE SLQ+Q+V K+KE VKEFYG+NIK+SPDYERI+NLRHFKRI SLLE
Sbjct: 237 CGQTCIAPDYILCEASLQNQIVWKIKETVKEFYGENIKESPDYERIINLRHFKRILSLLE 296
Query: 544 GQKIAFGGETDEATRYIAPTILTDVDPEAKVMREEIFGPILPIVPVKNADEAVKFINERE 723
GQKIAFGGETDEATRYIAPT+LTDVDP+ KVM+EEIFGPILPIVPVKN DEA+ FINERE
Sbjct: 297 GQKIAFGGETDEATRYIAPTVLTDVDPKTKVMQEEIFGPILPIVPVKNVDEAINFINERE 356
Query: 724 KPLAFYVFSRNNKLIKRMIEATSSGGVTGNDVIMHFMLSSLPFGGVGSSGMGAYHGKHSF 903
KPLA YVFS N+KLIKRMI+ TSSGGVTGNDVIMHF L+S PFGGVGSSGMGAYHGKHSF
Sbjct: 357 KPLALYVFSHNHKLIKRMIDETSSGGVTGNDVIMHFTLNSFPFGGVGSSGMGAYHGKHSF 416
Query: 904 ETFSHLRPCLLKSLKGEGANKLRYPPNSQSKVDWAKFFFLKRVSK 1038
+TFSH RPCLLKSLK EGANKLRYPPNSQSKVDW KFF LKR +K
Sbjct: 417 DTFSHQRPCLLKSLKREGANKLRYPPNSQSKVDWGKFFLLKRFNK 461
>ref|NP_001128640.1| aldehyde dehydrogenase, dimeric NADP-preferring [Homo sapiens].
Length = 453
Score = 473 bits (1218), Expect = e-133
Identities = 219/327 (66%), Positives = 275/327 (84%)
Frame = +1
Query: 4 LSIQPLXXXXXXXXXXXXKPSEISENTAKILAKLLPQYLDQDLYAVINGGVEETTKLLEQ 183
L+IQP+ KPSE+SEN A +LA ++PQYLD+DLY VINGGV ETT+LL++
Sbjct: 120 LTIQPMVGAIAAGNSVVLKPSELSENMASLLATIIPQYLDKDLYPVINGGVPETTELLKE 179
Query: 184 RFDHILYTGSTAVGKIVMEAAAKHLTPVTLELGGKSPCYIDPDCDLDVACRRIAWGKYMN 363
RFDHILYTGST VGKI+M AAAKHLTPVTLELGGKSPCY+D +CDLDVACRRIAWGK+MN
Sbjct: 180 RFDHILYTGSTGVGKIIMTAAAKHLTPVTLELGGKSPCYVDKNCDLDVACRRIAWGKFMN 239
Query: 364 CGQTCIAPDYVLCEPSLQDQVVQKMKEAVKEFYGDNIKDSPDYERIVNLRHFKRIQSLLE 543
GQTC+APDY+LC+PS+Q+Q+V+K+K+++KEFYG++ K S DY RI++ RHF+R+ L+E
Sbjct: 240 SGQTCVAPDYILCDPSIQNQIVEKLKKSLKEFYGEDAKKSRDYGRIISARHFQRVMGLIE 299
Query: 544 GQKIAFGGETDEATRYIAPTILTDVDPEAKVMREEIFGPILPIVPVKNADEAVKFINERE 723
GQK+A+GG D ATRYIAPTILTDVDP++ VM+EEIFGP+LPIV V++ +EA++FIN+RE
Sbjct: 300 GQKVAYGGTGDAATRYIAPTILTDVDPQSPVMQEEIFGPVLPIVCVRSLEEAIQFINQRE 359
Query: 724 KPLAFYVFSRNNKLIKRMIEATSSGGVTGNDVIMHFMLSSLPFGGVGSSGMGAYHGKHSF 903
KPLA Y+FS N+K+IK+MI TSSGGV NDVI+H L SLPFGGVG+SGMG+YHGK SF
Sbjct: 360 KPLALYMFSSNDKVIKKMIAETSSGGVAANDVIVHITLHSLPFGGVGNSGMGSYHGKKSF 419
Query: 904 ETFSHLRPCLLKSLKGEGANKLRYPPN 984
ETFSH R CL++ L + K+RYPP+
Sbjct: 420 ETFSHRRSCLVRPLMNDEGLKVRYPPS 446
>ref|NP_001128639.1| aldehyde dehydrogenase, dimeric NADP-preferring [Homo sapiens].
Length = 453
Score = 473 bits (1218), Expect = e-133
Identities = 219/327 (66%), Positives = 275/327 (84%)
Frame = +1
Query: 4 LSIQPLXXXXXXXXXXXXKPSEISENTAKILAKLLPQYLDQDLYAVINGGVEETTKLLEQ 183
L+IQP+ KPSE+SEN A +LA ++PQYLD+DLY VINGGV ETT+LL++
Sbjct: 120 LTIQPMVGAIAAGNSVVLKPSELSENMASLLATIIPQYLDKDLYPVINGGVPETTELLKE 179
Query: 184 RFDHILYTGSTAVGKIVMEAAAKHLTPVTLELGGKSPCYIDPDCDLDVACRRIAWGKYMN 363
RFDHILYTGST VGKI+M AAAKHLTPVTLELGGKSPCY+D +CDLDVACRRIAWGK+MN
Sbjct: 180 RFDHILYTGSTGVGKIIMTAAAKHLTPVTLELGGKSPCYVDKNCDLDVACRRIAWGKFMN 239
Query: 364 CGQTCIAPDYVLCEPSLQDQVVQKMKEAVKEFYGDNIKDSPDYERIVNLRHFKRIQSLLE 543
GQTC+APDY+LC+PS+Q+Q+V+K+K+++KEFYG++ K S DY RI++ RHF+R+ L+E
Sbjct: 240 SGQTCVAPDYILCDPSIQNQIVEKLKKSLKEFYGEDAKKSRDYGRIISARHFQRVMGLIE 299
Query: 544 GQKIAFGGETDEATRYIAPTILTDVDPEAKVMREEIFGPILPIVPVKNADEAVKFINERE 723
GQK+A+GG D ATRYIAPTILTDVDP++ VM+EEIFGP+LPIV V++ +EA++FIN+RE
Sbjct: 300 GQKVAYGGTGDAATRYIAPTILTDVDPQSPVMQEEIFGPVLPIVCVRSLEEAIQFINQRE 359
Query: 724 KPLAFYVFSRNNKLIKRMIEATSSGGVTGNDVIMHFMLSSLPFGGVGSSGMGAYHGKHSF 903
KPLA Y+FS N+K+IK+MI TSSGGV NDVI+H L SLPFGGVG+SGMG+YHGK SF
Sbjct: 360 KPLALYMFSSNDKVIKKMIAETSSGGVAANDVIVHITLHSLPFGGVGNSGMGSYHGKKSF 419
Query: 904 ETFSHLRPCLLKSLKGEGANKLRYPPN 984
ETFSH R CL++ L + K+RYPP+
Sbjct: 420 ETFSHRRSCLVRPLMNDEGLKVRYPPS 446
>ref|NP_000682.3| aldehyde dehydrogenase, dimeric NADP-preferring [Homo sapiens].
Length = 453
Score = 473 bits (1218), Expect = e-133
Identities = 219/327 (66%), Positives = 275/327 (84%)
Frame = +1
Query: 4 LSIQPLXXXXXXXXXXXXKPSEISENTAKILAKLLPQYLDQDLYAVINGGVEETTKLLEQ 183
L+IQP+ KPSE+SEN A +LA ++PQYLD+DLY VINGGV ETT+LL++
Sbjct: 120 LTIQPMVGAIAAGNSVVLKPSELSENMASLLATIIPQYLDKDLYPVINGGVPETTELLKE 179
Query: 184 RFDHILYTGSTAVGKIVMEAAAKHLTPVTLELGGKSPCYIDPDCDLDVACRRIAWGKYMN 363
RFDHILYTGST VGKI+M AAAKHLTPVTLELGGKSPCY+D +CDLDVACRRIAWGK+MN
Sbjct: 180 RFDHILYTGSTGVGKIIMTAAAKHLTPVTLELGGKSPCYVDKNCDLDVACRRIAWGKFMN 239
Query: 364 CGQTCIAPDYVLCEPSLQDQVVQKMKEAVKEFYGDNIKDSPDYERIVNLRHFKRIQSLLE 543
GQTC+APDY+LC+PS+Q+Q+V+K+K+++KEFYG++ K S DY RI++ RHF+R+ L+E
Sbjct: 240 SGQTCVAPDYILCDPSIQNQIVEKLKKSLKEFYGEDAKKSRDYGRIISARHFQRVMGLIE 299
Query: 544 GQKIAFGGETDEATRYIAPTILTDVDPEAKVMREEIFGPILPIVPVKNADEAVKFINERE 723
GQK+A+GG D ATRYIAPTILTDVDP++ VM+EEIFGP+LPIV V++ +EA++FIN+RE
Sbjct: 300 GQKVAYGGTGDAATRYIAPTILTDVDPQSPVMQEEIFGPVLPIVCVRSLEEAIQFINQRE 359
Query: 724 KPLAFYVFSRNNKLIKRMIEATSSGGVTGNDVIMHFMLSSLPFGGVGSSGMGAYHGKHSF 903
KPLA Y+FS N+K+IK+MI TSSGGV NDVI+H L SLPFGGVG+SGMG+YHGK SF
Sbjct: 360 KPLALYMFSSNDKVIKKMIAETSSGGVAANDVIVHITLHSLPFGGVGNSGMGSYHGKKSF 419
Query: 904 ETFSHLRPCLLKSLKGEGANKLRYPPN 984
ETFSH R CL++ L + K+RYPP+
Sbjct: 420 ETFSHRRSCLVRPLMNDEGLKVRYPPS 446
>ref|NP_001154945.1| aldehyde dehydrogenase family 3 member B1 isoform a [Homo sapiens].
Length = 468
Score = 392 bits (1007), Expect = e-109
Identities = 186/332 (56%), Positives = 245/332 (73%)
Frame = +1
Query: 4 LSIQPLXXXXXXXXXXXXKPSEISENTAKILAKLLPQYLDQDLYAVINGGVEETTKLLEQ 183
L++ PL KPSEIS+N KILA++LPQY+DQ +AV+ GG +ET +LLE
Sbjct: 120 LTLVPLVGALAAGNCVVLKPSEISKNVEKILAEVLPQYVDQSCFAVVLGGPQETGQLLEH 179
Query: 184 RFDHILYTGSTAVGKIVMEAAAKHLTPVTLELGGKSPCYIDPDCDLDVACRRIAWGKYMN 363
RFD+I +TGS VGKIVM AAAKHLTPVTLELGGK+PCY+D +CD R+AW +Y N
Sbjct: 180 RFDYIFFTGSPRVGKIVMTAAAKHLTPVTLELGGKNPCYVDDNCDPQTVANRVAWFRYFN 239
Query: 364 CGQTCIAPDYVLCEPSLQDQVVQKMKEAVKEFYGDNIKDSPDYERIVNLRHFKRIQSLLE 543
GQTC+APDYVLC P +Q++++ ++ + FYGD+ + SP+ RI+N + F+R+++LL
Sbjct: 240 AGQTCVAPDYVLCSPEMQERLLPALQSTITRFYGDDPQSSPNLGRIINQKQFQRLRALLG 299
Query: 544 GQKIAFGGETDEATRYIAPTILTDVDPEAKVMREEIFGPILPIVPVKNADEAVKFINERE 723
++A GG++DE+ RYIAPT+L DV VM+EEIFGPILPIV V++ DEA++FIN RE
Sbjct: 300 CGRVAIGGQSDESDRYIAPTVLVDVQEMEPVMQEEIFGPILPIVNVQSLDEAIEFINRRE 359
Query: 724 KPLAFYVFSRNNKLIKRMIEATSSGGVTGNDVIMHFMLSSLPFGGVGSSGMGAYHGKHSF 903
KPLA Y FS +++++KR++ TSSGG GND MH L+SLPFGGVG+SGMG YHGK SF
Sbjct: 360 KPLALYAFSNSSQVVKRVLTQTSSGGFCGNDGFMHMTLASLPFGGVGASGMGRYHGKFSF 419
Query: 904 ETFSHLRPCLLKSLKGEGANKLRYPPNSQSKV 999
+TFSH R CLL+S E N LRYPP S ++
Sbjct: 420 DTFSHHRACLLRSPGMEKLNALRYPPQSPRRL 451
>ref|NP_001025181.1| aldehyde dehydrogenase family 3 member B1 isoform b [Homo sapiens].
Length = 431
Score = 392 bits (1007), Expect = e-109
Identities = 186/332 (56%), Positives = 245/332 (73%)
Frame = +1
Query: 4 LSIQPLXXXXXXXXXXXXKPSEISENTAKILAKLLPQYLDQDLYAVINGGVEETTKLLEQ 183
L++ PL KPSEIS+N KILA++LPQY+DQ +AV+ GG +ET +LLE
Sbjct: 83 LTLVPLVGALAAGNCVVLKPSEISKNVEKILAEVLPQYVDQSCFAVVLGGPQETGQLLEH 142
Query: 184 RFDHILYTGSTAVGKIVMEAAAKHLTPVTLELGGKSPCYIDPDCDLDVACRRIAWGKYMN 363
RFD+I +TGS VGKIVM AAAKHLTPVTLELGGK+PCY+D +CD R+AW +Y N
Sbjct: 143 RFDYIFFTGSPRVGKIVMTAAAKHLTPVTLELGGKNPCYVDDNCDPQTVANRVAWFRYFN 202
Query: 364 CGQTCIAPDYVLCEPSLQDQVVQKMKEAVKEFYGDNIKDSPDYERIVNLRHFKRIQSLLE 543
GQTC+APDYVLC P +Q++++ ++ + FYGD+ + SP+ RI+N + F+R+++LL
Sbjct: 203 AGQTCVAPDYVLCSPEMQERLLPALQSTITRFYGDDPQSSPNLGRIINQKQFQRLRALLG 262
Query: 544 GQKIAFGGETDEATRYIAPTILTDVDPEAKVMREEIFGPILPIVPVKNADEAVKFINERE 723
++A GG++DE+ RYIAPT+L DV VM+EEIFGPILPIV V++ DEA++FIN RE
Sbjct: 263 CGRVAIGGQSDESDRYIAPTVLVDVQEMEPVMQEEIFGPILPIVNVQSLDEAIEFINRRE 322
Query: 724 KPLAFYVFSRNNKLIKRMIEATSSGGVTGNDVIMHFMLSSLPFGGVGSSGMGAYHGKHSF 903
KPLA Y FS +++++KR++ TSSGG GND MH L+SLPFGGVG+SGMG YHGK SF
Sbjct: 323 KPLALYAFSNSSQVVKRVLTQTSSGGFCGNDGFMHMTLASLPFGGVGASGMGRYHGKFSF 382
Query: 904 ETFSHLRPCLLKSLKGEGANKLRYPPNSQSKV 999
+TFSH R CLL+S E N LRYPP S ++
Sbjct: 383 DTFSHHRACLLRSPGMEKLNALRYPPQSPRRL 414
>ref|NP_000685.1| aldehyde dehydrogenase family 3 member B1 isoform a [Homo sapiens].
Length = 468
Score = 392 bits (1007), Expect = e-109
Identities = 186/332 (56%), Positives = 245/332 (73%)
Frame = +1
Query: 4 LSIQPLXXXXXXXXXXXXKPSEISENTAKILAKLLPQYLDQDLYAVINGGVEETTKLLEQ 183
L++ PL KPSEIS+N KILA++LPQY+DQ +AV+ GG +ET +LLE
Sbjct: 120 LTLVPLVGALAAGNCVVLKPSEISKNVEKILAEVLPQYVDQSCFAVVLGGPQETGQLLEH 179
Query: 184 RFDHILYTGSTAVGKIVMEAAAKHLTPVTLELGGKSPCYIDPDCDLDVACRRIAWGKYMN 363
RFD+I +TGS VGKIVM AAAKHLTPVTLELGGK+PCY+D +CD R+AW +Y N
Sbjct: 180 RFDYIFFTGSPRVGKIVMTAAAKHLTPVTLELGGKNPCYVDDNCDPQTVANRVAWFRYFN 239
Query: 364 CGQTCIAPDYVLCEPSLQDQVVQKMKEAVKEFYGDNIKDSPDYERIVNLRHFKRIQSLLE 543
GQTC+APDYVLC P +Q++++ ++ + FYGD+ + SP+ RI+N + F+R+++LL
Sbjct: 240 AGQTCVAPDYVLCSPEMQERLLPALQSTITRFYGDDPQSSPNLGRIINQKQFQRLRALLG 299
Query: 544 GQKIAFGGETDEATRYIAPTILTDVDPEAKVMREEIFGPILPIVPVKNADEAVKFINERE 723
++A GG++DE+ RYIAPT+L DV VM+EEIFGPILPIV V++ DEA++FIN RE
Sbjct: 300 CGRVAIGGQSDESDRYIAPTVLVDVQEMEPVMQEEIFGPILPIVNVQSLDEAIEFINRRE 359
Query: 724 KPLAFYVFSRNNKLIKRMIEATSSGGVTGNDVIMHFMLSSLPFGGVGSSGMGAYHGKHSF 903
KPLA Y FS +++++KR++ TSSGG GND MH L+SLPFGGVG+SGMG YHGK SF
Sbjct: 360 KPLALYAFSNSSQVVKRVLTQTSSGGFCGNDGFMHMTLASLPFGGVGASGMGRYHGKFSF 419
Query: 904 ETFSHLRPCLLKSLKGEGANKLRYPPNSQSKV 999
+TFSH R CLL+S E N LRYPP S ++
Sbjct: 420 DTFSHHRACLLRSPGMEKLNALRYPPQSPRRL 451
>ref|NP_001026786.1| aldehyde dehydrogenase family 3 member B2 [Homo sapiens].
Length = 385
Score = 362 bits (928), Expect = e-100
Identities = 170/316 (53%), Positives = 230/316 (72%)
Frame = +1
Query: 58 KPSEISENTAKILAKLLPQYLDQDLYAVINGGVEETTKLLEQRFDHILYTGSTAVGKIVM 237
KPSEIS+ T K+LA++LPQYLDQ +AV+ GG +ET +LLE + D+I +TGS VGKIVM
Sbjct: 57 KPSEISQGTEKVLAEVLPQYLDQSCFAVVLGGPQETGQLLEHKLDYIFFTGSPRVGKIVM 116
Query: 238 EAAAKHLTPVTLELGGKSPCYIDPDCDLDVACRRIAWGKYMNCGQTCIAPDYVLCEPSLQ 417
AA KHLTPVTLELGGK+PCY+D +CD R+AW Y N GQTC+APDYVLC P +Q
Sbjct: 117 TAATKHLTPVTLELGGKNPCYVDDNCDPQTVANRVAWFCYFNAGQTCVAPDYVLCSPEMQ 176
Query: 418 DQVVQKMKEAVKEFYGDNIKDSPDYERIVNLRHFKRIQSLLEGQKIAFGGETDEATRYIA 597
++++ ++ + FYGD+ + SP+ RI+N + F+R+++LL ++A GG+++E+ RYIA
Sbjct: 177 ERLLPALQSTITRFYGDDPQSSPNLGRIINQKQFQRLRALLGCGRVAIGGQSNESDRYIA 236
Query: 598 PTILTDVDPEAKVMREEIFGPILPIVPVKNADEAVKFINEREKPLAFYVFSRNNKLIKRM 777
PT+L DV VM+EEIFGPILPIV V++ DEA+KFIN +EKPLA Y FS +++++ +M
Sbjct: 237 PTVLVDVQETEPVMQEEIFGPILPIVNVQSVDEAIKFINRQEKPLALYAFSNSSQVVNQM 296
Query: 778 IEATSSGGVTGNDVIMHFMLSSLPFGGVGSSGMGAYHGKHSFETFSHLRPCLLKSLKGEG 957
+E TSSG GN+ + L S+PFGGVG SGMG YHGK +F+TFSH R CLL E
Sbjct: 297 LERTSSGSFGGNEGFTYISLLSVPFGGVGHSGMGRYHGKFTFDTFSHHRTCLLAPSGLEK 356
Query: 958 ANKLRYPPNSQSKVDW 1005
++ YPP + DW
Sbjct: 357 LKEIHYPPYT----DW 368
>ref|NP_000686.2| aldehyde dehydrogenase family 3 member B2 [Homo sapiens].
Length = 385
Score = 362 bits (928), Expect = e-100
Identities = 170/316 (53%), Positives = 230/316 (72%)
Frame = +1
Query: 58 KPSEISENTAKILAKLLPQYLDQDLYAVINGGVEETTKLLEQRFDHILYTGSTAVGKIVM 237
KPSEIS+ T K+LA++LPQYLDQ +AV+ GG +ET +LLE + D+I +TGS VGKIVM
Sbjct: 57 KPSEISQGTEKVLAEVLPQYLDQSCFAVVLGGPQETGQLLEHKLDYIFFTGSPRVGKIVM 116
Query: 238 EAAAKHLTPVTLELGGKSPCYIDPDCDLDVACRRIAWGKYMNCGQTCIAPDYVLCEPSLQ 417
AA KHLTPVTLELGGK+PCY+D +CD R+AW Y N GQTC+APDYVLC P +Q
Sbjct: 117 TAATKHLTPVTLELGGKNPCYVDDNCDPQTVANRVAWFCYFNAGQTCVAPDYVLCSPEMQ 176
Query: 418 DQVVQKMKEAVKEFYGDNIKDSPDYERIVNLRHFKRIQSLLEGQKIAFGGETDEATRYIA 597
++++ ++ + FYGD+ + SP+ RI+N + F+R+++LL ++A GG+++E+ RYIA
Sbjct: 177 ERLLPALQSTITRFYGDDPQSSPNLGRIINQKQFQRLRALLGCGRVAIGGQSNESDRYIA 236
Query: 598 PTILTDVDPEAKVMREEIFGPILPIVPVKNADEAVKFINEREKPLAFYVFSRNNKLIKRM 777
PT+L DV VM+EEIFGPILPIV V++ DEA+KFIN +EKPLA Y FS +++++ +M
Sbjct: 237 PTVLVDVQETEPVMQEEIFGPILPIVNVQSVDEAIKFINRQEKPLALYAFSNSSQVVNQM 296
Query: 778 IEATSSGGVTGNDVIMHFMLSSLPFGGVGSSGMGAYHGKHSFETFSHLRPCLLKSLKGEG 957
+E TSSG GN+ + L S+PFGGVG SGMG YHGK +F+TFSH R CLL E
Sbjct: 297 LERTSSGSFGGNEGFTYISLLSVPFGGVGHSGMGRYHGKFTFDTFSHHRTCLLAPSGLEK 356
Query: 958 ANKLRYPPNSQSKVDW 1005
++ YPP + DW
Sbjct: 357 LKEIHYPPYT----DW 368
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 77,582,943
Number of extensions: 2264310
Number of successful extensions: 11916
Number of sequences better than 1.0e-05: 33
Number of HSP's gapped: 11723
Number of HSP's successfully gapped: 33
Length of query: 661
Length of database: 18,297,164
Length adjustment: 109
Effective length of query: 552
Effective length of database: 14,704,088
Effective search space: 8116656576
Effective search space used: 8116656576
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007407
(1984 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_031463.2| fatty aldehyde dehydrogenase [Mus musculus]. 590 e-168
Alignment gi|NP_001106196.1| aldehyde dehydrogenase, dimeric NADP-preferr... 469 e-132
Alignment gi|NP_031462.2| aldehyde dehydrogenase, dimeric NADP-preferring... 469 e-132
Alignment gi|NP_001170909.1| aldehyde dehydrogenase 3 family, member B2 [... 397 e-110
Alignment gi|NP_082821.2| aldehyde dehydrogenase 3 family, member B2-like... 395 e-110
Alignment gi|NP_080592.2| aldehyde dehydrogenase family 3 member B1 [Mus ... 389 e-108
Alignment gi|NP_444310.3| aldehyde dehydrogenase family 1 member A3 [Mus ... 134 2e-31
Alignment gi|NP_038495.2| retinal dehydrogenase 1 [Mus musculus]. 129 6e-30
Alignment gi|NP_036051.1| aldehyde dehydrogenase, cytosolic 1 [Mus muscul... 122 8e-28
Alignment gi|NP_766120.1| succinate-semialdehyde dehydrogenase, mitochond... 119 1e-26
>ref|NP_031463.2| fatty aldehyde dehydrogenase [Mus musculus].
Length = 484
Score = 590 bits (1522), Expect = e-168
Identities = 281/347 (80%), Positives = 315/347 (90%)
Frame = +1
Query: 4 LSIQPLXXXXXXXXXXXXKPSEISENTAKILAKLLPQYLDQDLYAVINGGVEETTKLLEQ 183
L++QPL KPSE+SENTAKILA+LLPQYLDQDLYA++NGG+ ETT+LL+Q
Sbjct: 117 LTMQPLVGAIAAGNAAIVKPSELSENTAKILAELLPQYLDQDLYAIVNGGIPETTELLKQ 176
Query: 184 RFDHILYTGSTAVGKIVMEAAAKHLTPVTLELGGKSPCYIDPDCDLDVACRRIAWGKYMN 363
RFDHILYTG+TAVGKIVMEAAAKHLTPVTLELGGKSPCYID DCDLDVACRRIAWGKYMN
Sbjct: 177 RFDHILYTGNTAVGKIVMEAAAKHLTPVTLELGGKSPCYIDRDCDLDVACRRIAWGKYMN 236
Query: 364 CGQTCIAPDYVLCEPSLQDQVVQKMKEAVKEFYGDNIKDSPDYERIVNLRHFKRIQSLLE 543
CGQTCIAPDY+LCE SLQ+Q+VQK+KE VK+FYG+NIK SPDYERI+NLRHFKR+QSLL+
Sbjct: 237 CGQTCIAPDYILCEASLQNQIVQKIKETVKDFYGENIKASPDYERIINLRHFKRLQSLLK 296
Query: 544 GQKIAFGGETDEATRYIAPTILTDVDPEAKVMREEIFGPILPIVPVKNADEAVKFINERE 723
GQKIAFGGE DEATRY+APTILTDVDP +KVM+EEIFGPILPIV VKN DEA+ FIN+RE
Sbjct: 297 GQKIAFGGEMDEATRYLAPTILTDVDPNSKVMQEEIFGPILPIVSVKNVDEAINFINDRE 356
Query: 724 KPLAFYVFSRNNKLIKRMIEATSSGGVTGNDVIMHFMLSSLPFGGVGSSGMGAYHGKHSF 903
KPLA YVFSRNNKLIKR+I+ TSSGGVTGNDVIMHF ++SLPFGGVG+SGMGAYHGK+SF
Sbjct: 357 KPLALYVFSRNNKLIKRVIDETSSGGVTGNDVIMHFTVNSLPFGGVGASGMGAYHGKYSF 416
Query: 904 ETFSHLRPCLLKSLKGEGANKLRYPPNSQSKVDWAKFFFLKRVSKGR 1044
+TFSH RPCLLK LKGE NKLRYPPNS+SKV WAKFF LK+ +KGR
Sbjct: 417 DTFSHQRPCLLKGLKGESVNKLRYPPNSESKVSWAKFFLLKQFNKGR 463
>ref|NP_001106196.1| aldehyde dehydrogenase, dimeric NADP-preferring [Mus musculus].
Length = 453
Score = 469 bits (1207), Expect = e-132
Identities = 215/327 (65%), Positives = 277/327 (84%)
Frame = +1
Query: 4 LSIQPLXXXXXXXXXXXXKPSEISENTAKILAKLLPQYLDQDLYAVINGGVEETTKLLEQ 183
L+IQP+ KPSE+S++ A +L+ L+PQY+D+DLY VI GGV ETT+LL++
Sbjct: 120 LTIQPMVGAIAAGNAVVLKPSEVSDHMADLLSTLIPQYMDKDLYPVIKGGVPETTELLKE 179
Query: 184 RFDHILYTGSTAVGKIVMEAAAKHLTPVTLELGGKSPCYIDPDCDLDVACRRIAWGKYMN 363
+FDHI+YTGSTAVGKIVM AAAKHLTPVTLELGGKSPCY+D DCDLDVACRRIAWGK+MN
Sbjct: 180 KFDHIMYTGSTAVGKIVMAAAAKHLTPVTLELGGKSPCYVDKDCDLDVACRRIAWGKFMN 239
Query: 364 CGQTCIAPDYVLCEPSLQDQVVQKMKEAVKEFYGDNIKDSPDYERIVNLRHFKRIQSLLE 543
GQTC+APDY+LC+PS+Q+++V+K+K+++K+FYG++ K S DY RI+N RHF+R+ +L++
Sbjct: 240 SGQTCVAPDYILCDPSIQNEIVEKLKKSLKDFYGEDAKQSHDYGRIINDRHFQRVINLID 299
Query: 544 GQKIAFGGETDEATRYIAPTILTDVDPEAKVMREEIFGPILPIVPVKNADEAVKFINERE 723
+K+A GG D+ +RYIAPTIL DVDP++ VM+EEIFGP++PIV V++ DEA+KFIN+RE
Sbjct: 300 SKKVAHGGTWDQPSRYIAPTILVDVDPQSPVMQEEIFGPVMPIVCVRSLDEAIKFINQRE 359
Query: 724 KPLAFYVFSRNNKLIKRMIEATSSGGVTGNDVIMHFMLSSLPFGGVGSSGMGAYHGKHSF 903
KPLA YVFS N+K+IK+MI TSSGGVT NDVI+H + +LPFGGVG+SGMGAYHGK SF
Sbjct: 360 KPLALYVFSNNDKVIKKMIAETSSGGVTANDVIVHITVPTLPFGGVGNSGMGAYHGKKSF 419
Query: 904 ETFSHLRPCLLKSLKGEGANKLRYPPN 984
ETFSH R CL++SL+ E ANK RYPP+
Sbjct: 420 ETFSHRRSCLVRSLRNEEANKARYPPS 446
>ref|NP_031462.2| aldehyde dehydrogenase, dimeric NADP-preferring [Mus musculus].
Length = 453
Score = 469 bits (1207), Expect = e-132
Identities = 215/327 (65%), Positives = 277/327 (84%)
Frame = +1
Query: 4 LSIQPLXXXXXXXXXXXXKPSEISENTAKILAKLLPQYLDQDLYAVINGGVEETTKLLEQ 183
L+IQP+ KPSE+S++ A +L+ L+PQY+D+DLY VI GGV ETT+LL++
Sbjct: 120 LTIQPMVGAIAAGNAVVLKPSEVSDHMADLLSTLIPQYMDKDLYPVIKGGVPETTELLKE 179
Query: 184 RFDHILYTGSTAVGKIVMEAAAKHLTPVTLELGGKSPCYIDPDCDLDVACRRIAWGKYMN 363
+FDHI+YTGSTAVGKIVM AAAKHLTPVTLELGGKSPCY+D DCDLDVACRRIAWGK+MN
Sbjct: 180 KFDHIMYTGSTAVGKIVMAAAAKHLTPVTLELGGKSPCYVDKDCDLDVACRRIAWGKFMN 239
Query: 364 CGQTCIAPDYVLCEPSLQDQVVQKMKEAVKEFYGDNIKDSPDYERIVNLRHFKRIQSLLE 543
GQTC+APDY+LC+PS+Q+++V+K+K+++K+FYG++ K S DY RI+N RHF+R+ +L++
Sbjct: 240 SGQTCVAPDYILCDPSIQNEIVEKLKKSLKDFYGEDAKQSHDYGRIINDRHFQRVINLID 299
Query: 544 GQKIAFGGETDEATRYIAPTILTDVDPEAKVMREEIFGPILPIVPVKNADEAVKFINERE 723
+K+A GG D+ +RYIAPTIL DVDP++ VM+EEIFGP++PIV V++ DEA+KFIN+RE
Sbjct: 300 SKKVAHGGTWDQPSRYIAPTILVDVDPQSPVMQEEIFGPVMPIVCVRSLDEAIKFINQRE 359
Query: 724 KPLAFYVFSRNNKLIKRMIEATSSGGVTGNDVIMHFMLSSLPFGGVGSSGMGAYHGKHSF 903
KPLA YVFS N+K+IK+MI TSSGGVT NDVI+H + +LPFGGVG+SGMGAYHGK SF
Sbjct: 360 KPLALYVFSNNDKVIKKMIAETSSGGVTANDVIVHITVPTLPFGGVGNSGMGAYHGKKSF 419
Query: 904 ETFSHLRPCLLKSLKGEGANKLRYPPN 984
ETFSH R CL++SL+ E ANK RYPP+
Sbjct: 420 ETFSHRRSCLVRSLRNEEANKARYPPS 446
>ref|NP_001170909.1| aldehyde dehydrogenase 3 family, member B2 [Mus musculus].
Length = 479
Score = 397 bits (1019), Expect = e-110
Identities = 190/338 (56%), Positives = 244/338 (72%), Gaps = 3/338 (0%)
Frame = +1
Query: 4 LSIQPLXXXXXXXXXXXXKPSEISENTAKILAKLLPQYLDQDLYAVINGGVEETTKLLEQ 183
L I PL KPSEIS+NT K+LA+LLPQYLDQ +AV+ GG EET +LLE
Sbjct: 133 LMIIPLVGAIAAGNCVVLKPSEISKNTEKVLAELLPQYLDQSCFAVMLGGPEETRQLLEH 192
Query: 184 RFDHILYTGSTAVGKIVMEAAAKHLTPVTLELGGKSPCYIDPDCDLDVACRRIAWGKYMN 363
+FD+I +TGS VGKIVM AAAKHLTP+TLELGGK+PCY+D +CD R+AW +Y N
Sbjct: 193 KFDYIFFTGSPRVGKIVMTAAAKHLTPITLELGGKNPCYVDDNCDPQTVANRVAWFRYFN 252
Query: 364 CGQTCIAPDYVLCEPSLQDQVVQKMKEAVKEFYGDNIKDSPDYERIVNLRHFKRIQSLLE 543
GQTC+APDY+LC +Q+++V ++ ++ FYGDN + SP+ RI+N +HFKR+Q LL
Sbjct: 253 AGQTCVAPDYILCSQEMQERLVPALQNSITRFYGDNPQTSPNLGRIINQKHFKRLQGLLG 312
Query: 544 GQKIAFGGETDEATRYIAPTILTDVDPEAKVMREEIFGPILPIVPVKNADEAVKFINERE 723
++A GG++DE RYIAPT+L DV VM+EEIFGPILP+V V++ DEA++FIN RE
Sbjct: 313 CGRVAIGGQSDEGERYIAPTVLVDVQETEPVMQEEIFGPILPLVTVRSLDEAIEFINRRE 372
Query: 724 KPLAFYVFSRNNKLIKRMIEATSSGGVTGNDVIMHFMLSSLPFGGVGSSGMGAYHGKHSF 903
KPLA Y FS NN+++ +M+E TSSGG GND ++ L +LP GGVG+SGMG YHGK SF
Sbjct: 373 KPLALYAFSNNNQVVNQMLERTSSGGFGGNDGFLYLTLPALPLGGVGNSGMGRYHGKFSF 432
Query: 904 ETFSHLRPCLLKSLKGEGANKLRYPPN---SQSKVDWA 1008
+TFSH R CLL+S E N LRYPP +Q + WA
Sbjct: 433 DTFSHHRACLLRSPGMEKLNDLRYPPYGPWNQQLISWA 470
>ref|NP_082821.2| aldehyde dehydrogenase 3 family, member B2-like [Mus musculus].
Length = 479
Score = 395 bits (1015), Expect = e-110
Identities = 193/338 (57%), Positives = 244/338 (72%), Gaps = 3/338 (0%)
Frame = +1
Query: 4 LSIQPLXXXXXXXXXXXXKPSEISENTAKILAKLLPQYLDQDLYAVINGGVEETTKLLEQ 183
L I PL KPSEIS+NT K+LA+LLPQYLDQ +AV+ GG EET +LLE
Sbjct: 133 LMIIPLVGAIAAGNCVVLKPSEISKNTEKVLAELLPQYLDQSCFAVMLGGPEETGQLLEH 192
Query: 184 RFDHILYTGSTAVGKIVMEAAAKHLTPVTLELGGKSPCYIDPDCDLDVACRRIAWGKYMN 363
+FD+I +TGS VGKIVM AAAKHLTP+TLELGGK+PCY+D +CD R+AW +Y N
Sbjct: 193 KFDYIFFTGSPRVGKIVMTAAAKHLTPITLELGGKNPCYVDDNCDPQTVANRVAWFRYFN 252
Query: 364 CGQTCIAPDYVLCEPSLQDQVVQKMKEAVKEFYGDNIKDSPDYERIVNLRHFKRIQSLLE 543
GQTC+APDY+LC +Q+Q+V ++ A+ FYGDN + SP+ RI+N +HFKR+Q LL
Sbjct: 253 AGQTCVAPDYILCSQEMQEQLVPALQNAITRFYGDNPQTSPNLGRIINQKHFKRLQGLLG 312
Query: 544 GQKIAFGGETDEATRYIAPTILTDVDPEAKVMREEIFGPILPIVPVKNADEAVKFINERE 723
++A GG++DE RYIAPT+L DV VM+EEIFGPILP+V V++ DEA++F+N+RE
Sbjct: 313 CGRVAIGGQSDEGERYIAPTVLVDVQETEPVMQEEIFGPILPLVTVRSLDEAIEFMNQRE 372
Query: 724 KPLAFYVFSRNNKLIKRMIEATSSGGVTGNDVIMHFMLSSLPFGGVGSSGMGAYHGKHSF 903
KPLA Y +S N ++IK+++ TSSGG GND M+ LSSLPFGGVGSSGMG YHGK SF
Sbjct: 373 KPLALYAYSNNAEVIKQVLARTSSGGFCGNDGFMYMTLSSLPFGGVGSSGMGRYHGKFSF 432
Query: 904 ETFSHLRPCLLKSLKGEGANKLRYPPNS---QSKVDWA 1008
+TFS+ R CLL E N LRYPP S Q + WA
Sbjct: 433 DTFSNQRACLLSCPGMEKLNGLRYPPYSPRRQQLLRWA 470
>ref|NP_080592.2| aldehyde dehydrogenase family 3 member B1 [Mus musculus].
Length = 468
Score = 389 bits (1000), Expect = e-108
Identities = 184/328 (56%), Positives = 242/328 (73%)
Frame = +1
Query: 4 LSIQPLXXXXXXXXXXXXKPSEISENTAKILAKLLPQYLDQDLYAVINGGVEETTKLLEQ 183
L++ PL KPSEIS+ T KILA++LP+YLDQ + V+ GG +ET +LLE
Sbjct: 120 LTLVPLVGAIAAGNCVVLKPSEISKATEKILAEVLPRYLDQSCFTVVLGGRQETGQLLEH 179
Query: 184 RFDHILYTGSTAVGKIVMEAAAKHLTPVTLELGGKSPCYIDPDCDLDVACRRIAWGKYMN 363
+FD+I +TG+ VGKIVM AAAKHLTP+TLELGGK+PCY+D +CD + R+AW +Y N
Sbjct: 180 KFDYIFFTGNAYVGKIVMAAAAKHLTPITLELGGKNPCYVDDNCDPQIVANRVAWFRYFN 239
Query: 364 CGQTCIAPDYVLCEPSLQDQVVQKMKEAVKEFYGDNIKDSPDYERIVNLRHFKRIQSLLE 543
GQTC+APDY+LC +Q+++V ++ A+ FYGDN + SP+ RI+N +HFKR+Q LL
Sbjct: 240 AGQTCVAPDYILCSQEMQERLVPALQNAITRFYGDNPQTSPNLGRIINQKHFKRLQGLLG 299
Query: 544 GQKIAFGGETDEATRYIAPTILTDVDPEAKVMREEIFGPILPIVPVKNADEAVKFINERE 723
++A GG++DE RYIAPT+L DV VM+EEIFGPILP+V V++ DEA++F+N RE
Sbjct: 300 CGRVAIGGQSDEGERYIAPTVLVDVQETEPVMQEEIFGPILPLVTVRSLDEAIEFMNRRE 359
Query: 724 KPLAFYVFSRNNKLIKRMIEATSSGGVTGNDVIMHFMLSSLPFGGVGSSGMGAYHGKHSF 903
KPLA Y FS+ +++IK+++ TSSGG GND MH LSSLPFGGVG+SGMG YHGK SF
Sbjct: 360 KPLALYAFSKRSQVIKQVLARTSSGGFCGNDGFMHMTLSSLPFGGVGTSGMGRYHGKFSF 419
Query: 904 ETFSHLRPCLLKSLKGEGANKLRYPPNS 987
+TFS+ R CLL+S E N LRYPP S
Sbjct: 420 DTFSNQRACLLRSPGMEKINDLRYPPYS 447
>ref|NP_444310.3| aldehyde dehydrogenase family 1 member A3 [Mus musculus].
Length = 512
Score = 134 bits (338), Expect = 2e-31
Identities = 97/305 (31%), Positives = 150/305 (49%), Gaps = 11/305 (3%)
Frame = +1
Query: 58 KPSEISENTAKILAKLLPQYLDQDLYAVINGGVEETTKLL---EQRFDHILYTGSTAVGK 228
KP+E + TA LA L+ + I G T + + I +TGST VGK
Sbjct: 204 KPAEQTPLTALYLASLIKEVGFPPGVVNIVPGFGPTVGAAISSHPQINKIAFTGSTEVGK 263
Query: 229 IVMEAAAK-HLTPVTLELGGKSPCYIDPDCDLDVACRRIAWGKYMNCGQTCIAPDYVLCE 405
+V EAA++ +L VTLELGGK+PC + D DLD+A G + N GQ C A V E
Sbjct: 264 LVREAASRSNLKRVTLELGGKNPCIVCADADLDLAVECAHQGVFFNQGQCCTAASRVFVE 323
Query: 406 PSLQDQVVQKMKE-AVKEFYGDNIKDSPDYERIVNLRHFKRIQSLLE-----GQKIAFGG 567
+ + V++ E A K GD + ++ + F +I L+E G K+ GG
Sbjct: 324 EQVYGEFVRRSVEFAKKRPVGDPFDAKTEQGPQIDQKQFDKILELIESGKKEGAKLECGG 383
Query: 568 ET-DEATRYIAPTILTDVDPEAKVMREEIFGPILPIVPVKNADEAVKFINEREKPLAFYV 744
++ +I PT+ +DV ++ +EEIFGP+ PI+ KN +E +K N + L V
Sbjct: 384 SAMEDRGLFIKPTVFSDVTDNMRIAKEEIFGPVQPILKFKNLEEVIKRANSTDYGLTAAV 443
Query: 745 FSRNNKLIKRMIEATSSGGVTGNDVIMHFMLSSLPFGGVGSSGMGAYHGKHSFETFSHLR 924
F++N ++ A SG V N + + PFGG SG G G+++ ++ ++
Sbjct: 444 FTKNLDKALKLAAALESGTVWIN--CYNAFYAQAPFGGFKMSGNGRELGEYALAEYTEVK 501
Query: 925 PCLLK 939
+K
Sbjct: 502 TVTIK 506
>ref|NP_038495.2| retinal dehydrogenase 1 [Mus musculus].
Length = 501
Score = 129 bits (325), Expect = 6e-30
Identities = 84/258 (32%), Positives = 134/258 (51%), Gaps = 8/258 (3%)
Frame = +1
Query: 190 DHILYTGSTAVGKIVMEAAAK-HLTPVTLELGGKSPCYIDPDCDLDVACRRIAWGKYMNC 366
D + +TGST VGK++ EAA K +L VTLELGGKSPC + D DLD+A G + +
Sbjct: 240 DKVAFTGSTQVGKLIKEAAGKSNLKRVTLELGGKSPCIVFADADLDIAVEFAHHGVFYHQ 299
Query: 367 GQTCIAPDYVLCEPSLQDQVVQKMKEAVKEFYGDN-----IKDSPDYERIVNLRHFKRIQ 531
GQ C+A + E S+ D+ V++ E K++ N I P ++ + + I+
Sbjct: 300 GQCCVAASRIFVEESVYDEFVKRSVERAKKYVLGNPLTPGINQGPQIDKEQHDKILDLIE 359
Query: 532 S-LLEGQKI-AFGGETDEATRYIAPTILTDVDPEAKVMREEIFGPILPIVPVKNADEAVK 705
S EG K+ GG ++ PT+ ++V E ++ +EEIFGP+ I+ K+ D+ +K
Sbjct: 360 SGKKEGAKLECGGGRWGNKGFFVQPTVFSNVTDEMRIAKEEIFGPVQQIMKFKSVDDVIK 419
Query: 706 FINEREKPLAFYVFSRNNKLIKRMIEATSSGGVTGNDVIMHFMLSSLPFGGVGSSGMGAY 885
N LA +F+++ + A +G V N +M + + PFGG SG G
Sbjct: 420 RANNTTYGLAAGLFTKDLDKAITVSSALQAGVVWVNCYMM--LSAQCPFGGFKMSGNGRE 477
Query: 886 HGKHSFETFSHLRPCLLK 939
G+H ++ L+ +K
Sbjct: 478 LGEHGLYEYTELKTVAMK 495
>ref|NP_036051.1| aldehyde dehydrogenase, cytosolic 1 [Mus musculus].
Length = 501
Score = 122 bits (307), Expect = 8e-28
Identities = 83/253 (32%), Positives = 129/253 (50%), Gaps = 8/253 (3%)
Frame = +1
Query: 190 DHILYTGSTAVGKIVMEAAAK-HLTPVTLELGGKSPCYIDPDCDLDVACRRIAWGKYMNC 366
D + +TGST VGK++ EAA K +L VTLELGGKSPC + D DLD A G + +
Sbjct: 240 DKVSFTGSTEVGKLIKEAAGKSNLKRVTLELGGKSPCIVFADADLDSAVEFAHQGVFFHQ 299
Query: 367 GQTCIAPDYVLCEPSLQDQVVQKMKEAVKEFYGDN-----IKDSPDYERIVNLRHFKRIQ 531
GQ C+A + E S+ D+ V++ E K++ N I P ++ + + I+
Sbjct: 300 GQICVAASRLFVEESIYDEFVRRSVERAKKYILGNPLNSGINQGPQIDKEQHNKILGLIE 359
Query: 532 S-LLEGQKI-AFGGETDEATRYIAPTILTDVDPEAKVMREEIFGPILPIVPVKNADEAVK 705
S EG K+ GG ++ PT+ ++V E ++ +EEIFGP+ I+ K+ D+ +K
Sbjct: 360 SGKKEGAKLECGGGRWGNKGFFVQPTVFSNVTDEMRIAKEEIFGPVQQIMKFKSMDDVIK 419
Query: 706 FINEREKPLAFYVFSRNNKLIKRMIEATSSGGVTGNDVIMHFMLSSLPFGGVGSSGMGAY 885
N LA VF+++ + A +G V N + + PFGG SG G
Sbjct: 420 RANNTTYGLAAGVFTKDLDKAITVSSALQAGMVWVNCYLA--VPVQCPFGGFKMSGNGRE 477
Query: 886 HGKHSFETFSHLR 924
G+H ++ L+
Sbjct: 478 LGEHGLYEYTELK 490
>ref|NP_766120.1| succinate-semialdehyde dehydrogenase, mitochondrial precursor [Mus
musculus].
Length = 523
Score = 119 bits (297), Expect = 1e-26
Identities = 84/303 (27%), Positives = 152/303 (50%), Gaps = 14/303 (4%)
Frame = +1
Query: 58 KPSEISENTAKILAKLLPQY-LDQDLYAVI---NGGVEETTKLL--EQRFDHILYTGSTA 219
KP+E + +A LA+L Q + +Y VI +E ++L + I +TGSTA
Sbjct: 216 KPAEDTPYSALALAQLANQAGIPAGVYNVIPCSRNKAKEVGEVLCTDPLVSKISFTGSTA 275
Query: 220 VGKIVMEAAAKHLTPVTLELGGKSPCYIDPDCDLDVACRRIAWGKYMNCGQTCIAPDYVL 399
GKI++ AA + V++ELGG +P + ++D A K+ N GQTC+ + L
Sbjct: 276 TGKILLHHAANSVKRVSMELGGLAPFIVFDSANVDQAVAGAMASKFRNAGQTCVCSNRFL 335
Query: 400 CEPSLQDQVVQKMKEAVKEF--YGDNIKDSPDYERIVNLRHFKRIQ-----SLLEGQKIA 558
+ + D V K EA+K+ G+ ++ ++N + ++++ ++ +G +
Sbjct: 336 VQRGIHDSFVTKFAEAMKKSLRVGNGFEEGTTQGPLINEKAVEKVEKQVNDAVAKGATVV 395
Query: 559 FGGETDEA-TRYIAPTILTDVDPEAKVMREEIFGPILPIVPVKNADEAVKFINEREKPLA 735
GG+ ++ + PT+L++V + + EE FGP+ P++ +EAV N E LA
Sbjct: 396 TGGKRHQSGGNFFEPTLLSNVTRDMLCITEETFGPLAPVIKFDKEEEAVAIANAAEVGLA 455
Query: 736 FYVFSRNNKLIKRMIEATSSGGVTGNDVIMHFMLSSLPFGGVGSSGMGAYHGKHSFETFS 915
Y +S++ I R+ E G V N+ ++ + PFGGV SG+G K+ + +
Sbjct: 456 GYFYSQDPAQIWRVAEQLEVGMVGVNEGLISSV--ECPFGGVKQSGLGREGSKYGIDEYL 513
Query: 916 HLR 924
++
Sbjct: 514 EVK 516
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 65,316,956
Number of extensions: 1862570
Number of successful extensions: 9582
Number of sequences better than 1.0e-05: 23
Number of HSP's gapped: 9468
Number of HSP's successfully gapped: 23
Length of query: 661
Length of database: 15,617,559
Length adjustment: 108
Effective length of query: 553
Effective length of database: 12,373,671
Effective search space: 6842640063
Effective search space used: 6842640063
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007407
(1984 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003132080.1| PREDICTED: fatty aldehyde dehydrogenase-like... 674 0.0
Alignment gi|XP_003132084.2| PREDICTED: aldehyde dehydrogenase, dimeric N... 465 e-131
Alignment gi|XP_003353786.1| PREDICTED: LOW QUALITY PROTEIN: aldehyde deh... 375 e-104
Alignment gi|XP_001925921.3| PREDICTED: aldehyde dehydrogenase family 1 m... 133 3e-31
Alignment gi|XP_001924895.1| PREDICTED: 4-trimethylaminobutyraldehyde deh... 119 8e-27
Alignment gi|XP_003121238.2| PREDICTED: aldehyde dehydrogenase family 8 m... 114 3e-25
Alignment gi|XP_003353634.1| PREDICTED: aldehyde dehydrogenase X, mitocho... 112 6e-25
Alignment gi|XP_003353633.1| PREDICTED: aldehyde dehydrogenase X, mitocho... 112 6e-25
Alignment gi|XP_001926622.3| PREDICTED: aldehyde dehydrogenase family 1 m... 110 4e-24
Alignment gi|XP_003359162.1| PREDICTED: aldehyde dehydrogenase, mitochond... 104 2e-22
>ref|XP_003132080.1| PREDICTED: fatty aldehyde dehydrogenase-like [Sus scrofa].
Length = 485
Score = 674 bits (1738), Expect = 0.0
Identities = 335/347 (96%), Positives = 335/347 (96%)
Frame = +1
Query: 4 LSIQPLXXXXXXXXXXXXKPSEISENTAKILAKLLPQYLDQDLYAVINGGVEETTKLLEQ 183
LSIQPL KPSEISENTAKILAKLLPQYLDQDLYAVINGGVEETTKLLEQ
Sbjct: 117 LSIQPLIGAIAAGNAVIIKPSEISENTAKILAKLLPQYLDQDLYAVINGGVEETTKLLEQ 176
Query: 184 RFDHILYTGSTAVGKIVMEAAAKHLTPVTLELGGKSPCYIDPDCDLDVACRRIAWGKYMN 363
RFDHILYTGSTAVGKIVMEAAAKHLTPVTLELGGKSPCYIDPDCDLDVACRRIAWGKYMN
Sbjct: 177 RFDHILYTGSTAVGKIVMEAAAKHLTPVTLELGGKSPCYIDPDCDLDVACRRIAWGKYMN 236
Query: 364 CGQTCIAPDYVLCEPSLQDQVVQKMKEAVKEFYGDNIKDSPDYERIVNLRHFKRIQSLLE 543
CGQTCIAPDYVLCEPSLQDQVVQKMKEAVKEFYGDNIKDSPDYERIVNLRHFKRIQSLLE
Sbjct: 237 CGQTCIAPDYVLCEPSLQDQVVQKMKEAVKEFYGDNIKDSPDYERIVNLRHFKRIQSLLE 296
Query: 544 GQKIAFGGETDEATRYIAPTILTDVDPEAKVMREEIFGPILPIVPVKNADEAVKFINERE 723
GQKIAFGGETDEATRYIAPTILTDVDPEAKVMREEIFGPILPIVPVKNADEAVKFINERE
Sbjct: 297 GQKIAFGGETDEATRYIAPTILTDVDPEAKVMREEIFGPILPIVPVKNADEAVKFINERE 356
Query: 724 KPLAFYVFSRNNKLIKRMIEATSSGGVTGNDVIMHFMLSSLPFGGVGSSGMGAYHGKHSF 903
KPLAFYVFSRNNKLIKRMIEATSSGGVTGNDVIMHFMLSSLPFGGVGSSGMGAYHGKHSF
Sbjct: 357 KPLAFYVFSRNNKLIKRMIEATSSGGVTGNDVIMHFMLSSLPFGGVGSSGMGAYHGKHSF 416
Query: 904 ETFSHLRPCLLKSLKGEGANKLRYPPNSQSKVDWAKFFFLKRVSKGR 1044
ETFSHLRPCLLKSLKGEGANKLRYPPNSQSKVDWAKFFFLKRVSKGR
Sbjct: 417 ETFSHLRPCLLKSLKGEGANKLRYPPNSQSKVDWAKFFFLKRVSKGR 463
>ref|XP_003132084.2| PREDICTED: aldehyde dehydrogenase, dimeric NADP-preferring, partial
[Sus scrofa].
Length = 566
Score = 465 bits (1197), Expect = e-131
Identities = 214/327 (65%), Positives = 273/327 (83%)
Frame = +1
Query: 4 LSIQPLXXXXXXXXXXXXKPSEISENTAKILAKLLPQYLDQDLYAVINGGVEETTKLLEQ 183
L+IQP+ KPSE+SENT ++LA L+PQYLD+DLY V+ GGV ETT+LL++
Sbjct: 101 LTIQPMVGAIAAGNAVVIKPSELSENTERLLATLIPQYLDKDLYHVVTGGVPETTELLKE 160
Query: 184 RFDHILYTGSTAVGKIVMEAAAKHLTPVTLELGGKSPCYIDPDCDLDVACRRIAWGKYMN 363
RFDHILYTGS +GK+VM AAAKHLTPVTLELGGK+PCY+D DCDLDVACRRIAWGK+MN
Sbjct: 161 RFDHILYTGSPGIGKVVMTAAAKHLTPVTLELGGKNPCYVDKDCDLDVACRRIAWGKFMN 220
Query: 364 CGQTCIAPDYVLCEPSLQDQVVQKMKEAVKEFYGDNIKDSPDYERIVNLRHFKRIQSLLE 543
GQTC+ PDY+LC+PS+Q+Q+V+K+K+++KEFYG++ + S DY RI+N RHF+R+ LLE
Sbjct: 221 SGQTCVGPDYILCDPSIQNQIVEKLKKSLKEFYGEDARKSRDYGRIINSRHFQRVMGLLE 280
Query: 544 GQKIAFGGETDEATRYIAPTILTDVDPEAKVMREEIFGPILPIVPVKNADEAVKFINERE 723
GQK+A+GG D ATRYIAPTILTDVDP+++VM+EEIFGP++PIV V + +EA++FIN+RE
Sbjct: 281 GQKVAYGGTGDAATRYIAPTILTDVDPQSQVMQEEIFGPLMPIVCVGSLEEAIRFINQRE 340
Query: 724 KPLAFYVFSRNNKLIKRMIEATSSGGVTGNDVIMHFMLSSLPFGGVGSSGMGAYHGKHSF 903
KPLA YVFS ++K+I++MI TSSGGVT NDVI+H + SLPFGGVG+SGMG+YHGK SF
Sbjct: 341 KPLALYVFSLHDKVIQKMIAETSSGGVTANDVIVHITVPSLPFGGVGNSGMGSYHGKKSF 400
Query: 904 ETFSHLRPCLLKSLKGEGANKLRYPPN 984
ETFSH R CL++ L E + RYPP+
Sbjct: 401 ETFSHRRSCLVRPLLNEETLRARYPPS 427
>ref|XP_003353786.1| PREDICTED: LOW QUALITY PROTEIN: aldehyde dehydrogenase family 3
member B1-like [Sus scrofa].
Length = 486
Score = 375 bits (964), Expect = e-104
Identities = 181/338 (53%), Positives = 240/338 (71%), Gaps = 3/338 (0%)
Frame = +1
Query: 4 LSIQPLXXXXXXXXXXXXKPSEISENTAKILAKLLPQYLDQDLYAVINGGVEETTKLLEQ 183
L++ PL KPSEIS++T K+LA++LP+YLDQ +AV+ GG EET +LLE
Sbjct: 140 LTLMPLVGALAAGNCVVLKPSEISKSTEKVLAEVLPRYLDQSCFAVVLGGPEETGQLLEH 199
Query: 184 RFDHILYTGSTAVGKIVMEAAAKHLTPVTLELGGKSPCYIDPDCDLDVACRRIAWGKYMN 363
+FD+I +TGS VG IVM AAAKHLTPVTLELGGK+PCY+D +CD R+A +Y+N
Sbjct: 200 KFDYIFFTGSPRVGXIVMTAAAKHLTPVTLELGGKNPCYVDDNCDPQTVANRVALFRYLN 259
Query: 364 CGQTCIAPDYVLCEPSLQDQVVQKMKEAVKEFYGDNIKDSPDYERIVNLRHFKRIQSLLE 543
GQTC+APDY+LC P Q +++ ++ A+ FYGD+ + SPD RI+N +HF+R+Q LL
Sbjct: 260 TGQTCVAPDYILCSPETQARLLPALQSAITRFYGDDPRASPDLGRIINHKHFQRLQGLLS 319
Query: 544 GQKIAFGGETDEATRYIAPTILTDVDPEAKVMREEIFGPILPIVPVKNADEAVKFINERE 723
++A GG++D++ RYIAPT+L DV VM+EEIFGPILPI+ V+ DEA+ FIN RE
Sbjct: 320 CGRVAIGGQSDDSDRYIAPTVLVDVQETEPVMQEEIFGPILPILNVRGLDEAIDFINRRE 379
Query: 724 KPLAFYVFSRNNKLIKRMIEATSSGGVTGNDVIMHFMLSSLPFGGVGSSGMGAYHGKHSF 903
KPLA Y FS N+++I +M++ TSSG GND ++ L SLP GGVG+SGMG YHG+ SF
Sbjct: 380 KPLALYAFSNNSQVINQMLDRTSSGTFGGNDGFIYLTLPSLPLGGVGNSGMGRYHGEFSF 439
Query: 904 ETFSHLRPCLLKSLKGEGANKLRYPPNS---QSKVDWA 1008
+TFSH R CLL E N++RYPP S Q + WA
Sbjct: 440 DTFSHHRACLLAHSDLEKLNEIRYPPYSGWNQQVISWA 477
>ref|XP_001925921.3| PREDICTED: aldehyde dehydrogenase family 1 member A3, partial [Sus
scrofa].
Length = 655
Score = 133 bits (335), Expect = 3e-31
Identities = 86/260 (33%), Positives = 136/260 (52%), Gaps = 8/260 (3%)
Frame = +1
Query: 184 RFDHILYTGSTAVGKIVMEAAAK-HLTPVTLELGGKSPCYIDPDCDLDVACRRIAWGKYM 360
+ + I +TGST VGK+V EAA++ +L VTLELGGK+PC + D DLD+A G +
Sbjct: 392 QINKIAFTGSTEVGKLVKEAASRSNLKRVTLELGGKNPCIVCADADLDLAVECAHQGVFF 451
Query: 361 NCGQTCIAPDYVLCEPSLQDQVVQKMKE-AVKEFYGDNIKDSPDYERIVNLRHFKRIQSL 537
N GQ C A V E + + V++ E A K GD + ++ + F +I L
Sbjct: 452 NQGQCCTAASRVFVEEQVYSEFVKRSVEYAKKRPVGDPFDVRTEQGPQIDQKQFNKILDL 511
Query: 538 LE-----GQKIAFGGET-DEATRYIAPTILTDVDPEAKVMREEIFGPILPIVPVKNADEA 699
+E G K+ GG ++ +I PT+ ++V ++ +EEIFGP+ PI+ KN +E
Sbjct: 512 IESGKKEGAKLECGGSAMEDRGLFIKPTVFSEVTDTMRIAKEEIFGPVQPILKFKNIEEV 571
Query: 700 VKFINEREKPLAFYVFSRNNKLIKRMIEATSSGGVTGNDVIMHFMLSSLPFGGVGSSGMG 879
+K N E L VF++N ++ A SG V N + + + PFGG SG G
Sbjct: 572 IKRANSLEYGLTAAVFTKNLDKALKLASALESGTVWIN--CYNAIYAQAPFGGFKMSGNG 629
Query: 880 AYHGKHSFETFSHLRPCLLK 939
G+++ ++ ++ +K
Sbjct: 630 RELGEYALAEYTEVKTVTIK 649
>ref|XP_001924895.1| PREDICTED: 4-trimethylaminobutyraldehyde dehydrogenase [Sus scrofa].
Length = 596
Score = 119 bits (297), Expect = 8e-27
Identities = 89/305 (29%), Positives = 150/305 (49%), Gaps = 16/305 (5%)
Frame = +1
Query: 58 KPSEISENTAKILAKLLPQY-LDQDLYAVINGGVEETTKLLEQRFD--HILYTGSTAVGK 228
KPS + + +LA++ + + L+ V+ GG T +LL Q D I +TGS G
Sbjct: 282 KPSPFTPLSVLLLAEIYTEAGVPPGLFNVVQGGAT-TGQLLCQHRDVAKISFTGSVPTGS 340
Query: 229 IVMEAAAKHLTPVTLELGGKSPCYIDPDCDLDVACRRIAWGKYMNCGQTCIAPDYVLCEP 408
+ME +AK + PVTLELGGKSP I DCD+ A + ++ G+ C V +
Sbjct: 341 KIMEMSAKGIKPVTLELGGKSPLIIFSDCDMGNAVKGALMANFLTQGEVCCNGTRVFVQK 400
Query: 409 SLQDQVVQK-MKEAVKEFYGDNIKDSPDYERIVNLRHFKRIQSLL-----EGQKIAFGGE 570
+ D+ ++ +K+ + GD + + ++N H +RI + +G K+ GG+
Sbjct: 401 EILDKFTEEVVKQTQRIKIGDPLLEDTRMGPLINRPHLERILGFVKVAKEQGAKVLCGGD 460
Query: 571 ----TDEATR---YIAPTILTDVDPEAKVMREEIFGPILPIVPVKNADEAVKFINEREKP 729
D + Y+ P +LT+ + ++EEIFGP++ I+ E V+ N+
Sbjct: 461 LYVPEDPKLKEGYYMRPCVLTNCRDDMTCVKEEIFGPVMSILSFDTEAEVVERANDTTFG 520
Query: 730 LAFYVFSRNNKLIKRMIEATSSGGVTGNDVIMHFMLSSLPFGGVGSSGMGAYHGKHSFET 909
LA VF+R+ + R++ +G N+ + LPFGG SG G +G+ + E
Sbjct: 521 LAAGVFTRDIQRAHRVVAELQAGMCFINN--YNVSPVELPFGGYKKSGFGRENGRVTIEY 578
Query: 910 FSHLR 924
+S L+
Sbjct: 579 YSQLK 583
>ref|XP_003121238.2| PREDICTED: aldehyde dehydrogenase family 8 member A1-like [Sus
scrofa].
Length = 483
Score = 114 bits (284), Expect = 3e-25
Identities = 82/311 (26%), Positives = 153/311 (49%), Gaps = 17/311 (5%)
Frame = +1
Query: 58 KPSEISENTAKILAKLLPQY-LDQDLYAVINGGVEETTKLL--EQRFDHILYTGSTAVGK 228
KPSE++ TA ++ KLL + + + ++ G + L I +TGS +
Sbjct: 174 KPSELTSVTAWMMCKLLEKAGVPPGVVNIVFGTGPRAGEALVSHPEVPLISFTGSQPTAE 233
Query: 229 IVMEAAAKHLTPVTLELGGKSPCYIDPDCDLDVACRRIAWGKYMNCGQTCIAPDYVLCEP 408
+ + +A H ++LELGGK+P I D +L+ + N G+ C+ + +
Sbjct: 234 RITQLSAPHCKKLSLELGGKNPAIIFEDANLEECVPTTVRSSFANQGEICLCTSRIFVQR 293
Query: 409 SLQDQVVQKMKEAVKEF-YGDNIKDSPDYERIVNLRHFKRIQSL-----LEGQKIAFGGE 570
S+ + +++ +A + + G S +++ H ++++S LEG +I G
Sbjct: 294 SIYSEFLKRFVDATRMWKVGIPSDPSASMGALISKAHLEKVRSYIKKARLEGAQILCGEG 353
Query: 571 TDEATR--------YIAPTILTDVDPEAKVMREEIFGPILPIVPVKNADEAVKFINEREK 726
D+ ++ PT++TD+ E+ M+EEIFGP+ +VP + +E ++ N +
Sbjct: 354 VDKLNLPPRNQGGYFMLPTVITDIKDESCCMKEEIFGPVTCVVPFDSEEEVIQRANSVKY 413
Query: 727 PLAFYVFSRNNKLIKRMIEATSSGGVTGNDVIMHFMLSSLPFGGVGSSGMGAYHGKHSFE 906
LA V+S N + R+ + SG V N ++ + +LPFGG+ SSG+G K S+E
Sbjct: 414 GLAATVWSGNVGRVHRVAKKLQSGLVWTNCWLIREL--NLPFGGMKSSGVGREGAKDSYE 471
Query: 907 TFSHLRPCLLK 939
F+ ++ +K
Sbjct: 472 FFTEVKTVTVK 482
>ref|XP_003353634.1| PREDICTED: aldehyde dehydrogenase X, mitochondrial [Sus scrofa].
Length = 517
Score = 112 bits (281), Expect = 6e-25
Identities = 76/256 (29%), Positives = 125/256 (48%), Gaps = 8/256 (3%)
Frame = +1
Query: 196 ILYTGSTAVGKIVMEAAA-KHLTPVTLELGGKSPCYIDPDCDLDVACRRIAWGKYMNCGQ 372
+ +TGST VG ++ +AA +L VTLELGGKSP + D D+D A + + N GQ
Sbjct: 258 VAFTGSTEVGHLIQKAAGDSNLKRVTLELGGKSPSIVLADADMDHAVEQCHEALFFNMGQ 317
Query: 373 TCIAPDYVLCEPSLQDQVVQK-MKEAVKEFYGDNIKDSPDYERIVNLRHFKRIQSLL--- 540
C A E S+ D+ +++ +++A + G+ + VN F+RI +
Sbjct: 318 CCCAGSRTFVEESIYDEFLERTVEKAKRRKVGNPFELDTQQGPQVNKEQFERILGYIQLG 377
Query: 541 --EGQKIAFGGET-DEATRYIAPTILTDVDPEAKVMREEIFGPILPIVPVKNADEAVKFI 711
EG K+ GGE E +I PT+ V + ++ +EEIFGP+ P+ K +E ++
Sbjct: 378 QKEGAKLLCGGERFGERGFFIKPTVFGGVQDDMRIAKEEIFGPVQPLFKFKRIEEVIERA 437
Query: 712 NEREKPLAFYVFSRNNKLIKRMIEATSSGGVTGNDVIMHFMLSSLPFGGVGSSGMGAYHG 891
N LA VF+++ +A +G V N + + PFGG SG G G
Sbjct: 438 NNTRYGLAAAVFTQDLDKAMYFTQALQAGTVWVN--TYNIVTCHTPFGGFKESGNGRELG 495
Query: 892 KHSFETFSHLRPCLLK 939
+ + ++ ++ +K
Sbjct: 496 EDGLKAYTEVKTVTIK 511
>ref|XP_003353633.1| PREDICTED: aldehyde dehydrogenase X, mitochondrial-like [Sus scrofa].
Length = 517
Score = 112 bits (281), Expect = 6e-25
Identities = 76/256 (29%), Positives = 125/256 (48%), Gaps = 8/256 (3%)
Frame = +1
Query: 196 ILYTGSTAVGKIVMEAAA-KHLTPVTLELGGKSPCYIDPDCDLDVACRRIAWGKYMNCGQ 372
+ +TGST VG ++ +AA +L VTLELGGKSP + D D+D A + + N GQ
Sbjct: 258 VAFTGSTEVGHLIQKAAGDSNLKRVTLELGGKSPSIVLADADMDHAVEQCHEALFFNMGQ 317
Query: 373 TCIAPDYVLCEPSLQDQVVQK-MKEAVKEFYGDNIKDSPDYERIVNLRHFKRIQSLL--- 540
C A E S+ D+ +++ +++A + G+ + VN F+RI +
Sbjct: 318 CCCAGSRTFVEESIYDEFLERTVEKAKRRKVGNPFELDTQQGPQVNKEQFERILGYIQLG 377
Query: 541 --EGQKIAFGGET-DEATRYIAPTILTDVDPEAKVMREEIFGPILPIVPVKNADEAVKFI 711
EG K+ GGE E +I PT+ V + ++ +EEIFGP+ P+ K +E ++
Sbjct: 378 QKEGAKLLCGGERFGERGFFIKPTVFGGVQDDMRIAKEEIFGPVQPLFKFKRIEEVIERA 437
Query: 712 NEREKPLAFYVFSRNNKLIKRMIEATSSGGVTGNDVIMHFMLSSLPFGGVGSSGMGAYHG 891
N LA VF+++ +A +G V N + + PFGG SG G G
Sbjct: 438 NNTRYGLAAAVFTQDLDKAMYFTQALQAGTVWVN--TYNIVTCHTPFGGFKESGNGRELG 495
Query: 892 KHSFETFSHLRPCLLK 939
+ + ++ ++ +K
Sbjct: 496 EDGLKAYTEVKTVTIK 511
>ref|XP_001926622.3| PREDICTED: aldehyde dehydrogenase family 1 member L2, mitochondrial
[Sus scrofa].
Length = 923
Score = 110 bits (274), Expect = 4e-24
Identities = 89/307 (28%), Positives = 149/307 (48%), Gaps = 13/307 (4%)
Frame = +1
Query: 58 KPSEISENTAKILAKL-LPQYLDQDLYAVINGGVEETTKLLEQRFD--HILYTGSTAVGK 228
KP++++ TA A+L + + + +I G + L + D + +TGST +GK
Sbjct: 618 KPAQVTPLTALKFAELSVKAGFPKGVINIIPGSGGIAGQRLSEHPDIRKLGFTGSTPIGK 677
Query: 229 IVMEAAA-KHLTPVTLELGGKSPCYIDPDCDLDVACRRIAWGKYMNCGQTCIAPDYVLCE 405
+M++ A +L V+LELGGKSP I DC+LD A R + N G+ CIA + E
Sbjct: 678 QIMKSCAVSNLKKVSLELGGKSPLLIFNDCELDKAVRMGMGAVFFNKGENCIAAGRLFVE 737
Query: 406 PSLQDQVVQKMKEAVKEF-YGDNIKDSPDYERIVNLRHFKRI-----QSLLEGQKIAFGG 567
S+ D+ V ++ E +K+ GD + S D+ + H +++ + EG + +GG
Sbjct: 738 ESIHDEFVTRVVEEIKKMKIGDPLDRSTDHGPQNHKAHLEKLLQYCEAGVKEGATLVYGG 797
Query: 568 -ETDEATRYIAPTILTDVDPEAKVMREEIFGPILPIVPVKNA--DEAVKFINEREKPLAF 738
+ ++ PT+ TDV+ + +EE FGPI+ I +N D ++ N E LA
Sbjct: 798 RQVQRPGFFMEPTVFTDVEDHMYLAKEESFGPIMVISKFRNGDIDGVLERANNTEYGLAS 857
Query: 739 YVFSRNNKLIKRMIEATSSGGVTGNDVIMHFMLSSLPFGGVGSSGMGAYHGKHSFETFSH 918
VF+R+ + E +G V N + + PFGG SG G G+ + +
Sbjct: 858 GVFTRDINKAMYVSEKLEAGTVFINTYNKTDV--AAPFGGFKQSGFGKDLGEEALNEYLR 915
Query: 919 LRPCLLK 939
+ L+
Sbjct: 916 TKTVTLE 922
>ref|XP_003359162.1| PREDICTED: aldehyde dehydrogenase, mitochondrial-like isoform 2
[Sus scrofa].
Length = 474
Score = 104 bits (260), Expect = 2e-22
Identities = 72/258 (27%), Positives = 121/258 (46%), Gaps = 8/258 (3%)
Frame = +1
Query: 190 DHILYTGSTAVGKIVMEAAAK-HLTPVTLELGGKSPCYIDPDCDLDVACRRIAWGKYMNC 366
D + +TGST VG ++ AA K +L VTLELGGKSP I D D+D A + + + N
Sbjct: 213 DKVAFTGSTEVGHLIQVAAGKSNLKRVTLELGGKSPNIIMSDADMDWAVEQAHFALFFNQ 272
Query: 367 GQTCIAPDYVLCEPSLQDQVVQK-MKEAVKEFYGDNIKDSPDYERIVNLRHFKRIQSLLE 543
GQ C A + + + V++ + A G+ + ++ FK+I ++
Sbjct: 273 GQCCCAGSRTFVQEDIYAEFVERSVARARSRVVGNPFDSRTEQGPQIDETQFKKILGYIK 332
Query: 544 GQK------IAFGGETDEATRYIAPTILTDVDPEAKVMREEIFGPILPIVPVKNADEAVK 705
K + GG + +I PT+ DV + +EEIFGP++ I+ K +E +
Sbjct: 333 SGKEEGAKLLCGGGAAADRGYFIQPTVFGDVQDGMTIAKEEIFGPVMQILKFKTIEEVIG 392
Query: 706 FINEREKPLAFYVFSRNNKLIKRMIEATSSGGVTGNDVIMHFMLSSLPFGGVGSSGMGAY 885
N + LA VF+++ + +A +G V N + PFGG SG G
Sbjct: 393 RANNSKYGLAAAVFTKDLDKANYLSQALQAGTVWVN--CYDVFGAQSPFGGYKLSGSGRE 450
Query: 886 HGKHSFETFSHLRPCLLK 939
G++ + ++ ++ +K
Sbjct: 451 LGEYGLQAYTEVKTVTVK 468
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 48,975,864
Number of extensions: 1451516
Number of successful extensions: 7894
Number of sequences better than 1.0e-05: 15
Number of HSP's gapped: 7775
Number of HSP's successfully gapped: 15
Length of query: 661
Length of database: 11,343,932
Length adjustment: 105
Effective length of query: 556
Effective length of database: 8,729,747
Effective search space: 4853739332
Effective search space used: 4853739332
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007407
(1984 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr12 1659 0.0
>Sscrofa_Chr12
|| Length = 63588571
Score = 1659 bits (837), Expect = 0.0
Identities = 875/888 (98%), Gaps = 2/888 (0%)
Strand = Plus / Plus
Query: 1097 aggctggataccgctgaaggagctgcctgtgctgccgacgccttgtctcttccatttttc 1156
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62607744 aggctggataccgctgaaggagctgcctgtgctgccgacgccttgtctcttccatttttc 62607803
Query: 1157 tattaaacagctaatgaaccaataatttttaaatcctaacaaaaatagtagaagatacac 1216
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 62607804 tattaaacagctaatgaaccaataatttttaaatcctaccaaaaatagtagaagatacac 62607863
Query: 1217 aaacgcaccgtgatggaacctgagagtcactgccactcactgtctttccagccagagccc 1276
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62607864 aaacgcaccgtgatggaacctgagagtcactgccactcactgtctttccagccagagccc 62607923
Query: 1277 cacgcccccacccagggctaagggtcctgggaggaccccatcccgctgggtcccgggccc 1336
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62607924 cacgcccccacccagggctaagggtcctgggaggaccccatcccgctgggtcccgggccc 62607983
Query: 1337 tggagccctgggctggggagcagcgcccactnnnnnnnnnngcgaagcatcacccggaaa 1396
||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 62607984 tggagccctgggctggggagcagcgcccactccccccccc-gcgaagcatcacccggaaa 62608042
Query: 1397 ccttccagagccagccccgccctggtttccaggccttcccagcctccattccaggttcga 1456
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62608043 ccttccagagccagccccgccctggtttccaggccttcccagcctccattccaggttcga 62608102
Query: 1457 ggccctcgagctagggtcgggctggggtccccgtcgctcaccattgagacttgaagacca 1516
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62608103 ggccctcgagctagggtcgggctggggtccccgtcgctcaccattgagacttgaagacca 62608162
Query: 1517 gacccgcgggcatctccctttctcgtctctgctccgtcctgtcctgtgcttggggtgcga 1576
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62608163 gacccgcgggcatctccctttctcgtctctgctccgtcctgtcctgtgcttggggtgcga 62608222
Query: 1577 cggtcccttgtggctgtccacactcggtttccgacgtcgctagagcgtccagtgcgtcct 1636
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62608223 cggtcccttgtggctgtccacactcggtttccgacgtcgctagagcgtccagtgcgtcct 62608282
Query: 1637 aaggcttcctggaagacagcggccaacgcgtgcacgcggctttcatctgccctcctcaag 1696
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62608283 aaggcttcctggaagacagcggccaacgcgtgcacgcggctttcatctgccctcctcaag 62608342
Query: 1697 tggagctgctgcagaatttaaaccctaacgtgcattttaacgctgtaacaaaagtgcttg 1756
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62608343 tggagctgctgcagaatttaaaccctaacgtgcattttaacgctgtaacaaaagtgcttg 62608402
Query: 1757 taaactctgcgaggacagcgcgggccccacggaaggggacagaagacaggaagcgccggg 1816
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62608403 taaactctgcgaggacagcgcgggccccacggaaggggacagaagacaggaagcgccggg 62608462
Query: 1817 gttctttagccaaatggaaagtctcacaaagagcctggggcgggtcctggccacaggccc 1876
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 62608463 gttctttagccaaatggaaagtctcacaaagagcctggggcgggtcctggccacagg-cc 62608521
Query: 1877 ccacttcctccacccccaacccctacacgcacgcatgcacgtgcttggcaaaatccacca 1936
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62608522 ccacttcctccacccccaacccctacacgcacgcatgcacgtgcttggcaaaatccacca 62608581
Query: 1937 ctgaatcggcaaatgtgactcactttacaagacgtataattcactctg 1984
||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 62608582 ctgaatcggcaaatgtgactcactttacaggacgtataattcactctg 62608629
Score = 430 bits (217), Expect = e-117
Identities = 231/238 (97%)
Strand = Plus / Plus
Query: 862 ggttccagtgggatgggagcttatcacggcaagcacagcttcgaaaccttctcccacctc 921
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62603907 ggttccagtgggatgggagcttatcacggcaagcacagcttcgaaaccttctcccacctc 62603966
Query: 922 cggccctgcctgttaaaaagtttgaagggggaaggtgccaacaagctcaggtannnnnnn 981
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62603967 cggccctgcctgttaaaaagtttgaagggggaaggtgccaacaagctcaggtaccccccc 62604026
Query: 982 aacagccagtccaaggtggactgggccaagttcttcttcttgaagcgggtcagcaaaggg 1041
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62604027 aacagccagtccaaggtggactgggccaagttcttcttcttgaagcgggtcagcaaaggg 62604086
Query: 1042 agactgggcctcctgttcctcgcgctgctgggcgtcgtgctggccgtgctcctcaagg 1099
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62604087 agactgggcctcctgttcctcgcgctgctgggcgtcgtgctggccgtgctcctcaagg 62604144
Score = 369 bits (186), Expect = 4e-99
Identities = 203/211 (96%)
Strand = Plus / Plus
Query: 125 aggacctgtacgctgtcatcaatggcggcgtcgaggaaaccacgaagctgctggagcagc 184
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 62596294 aggacctgtacgctgtcatcaatggcggcgttgaggaaaccacgaagctgctggagcagc 62596353
Query: 185 gatttgaccacattctctacacgggaagcaccgcggtggggaagattgtcatggaagccg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62596354 gatttgaccacattctctacacgggaagcaccgcggtggggaagattgtcatggaagccg 62596413
Query: 245 ctgccaagcatttgacccctgtgacccttgaactnnnnnnnaagagcccgtgttacattg 304
|||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 62596414 ctgccaagcatttgacccctgtgacccttgaactgggggggaagagcccgtgttacattg 62596473
Query: 305 acccagactgtgacctggacgtcgcctgcag 335
|||||||||||||||||||||||||||||||
Sbjct: 62596474 acccagactgtgacctggacgtcgcctgcag 62596504
Score = 335 bits (169), Expect = 6e-89
Identities = 169/169 (100%)
Strand = Plus / Plus
Query: 594 agccccaacaatacttaccgatgttgatcctgaagccaaggtgatgcgagaagagatttt 653
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62600524 agccccaacaatacttaccgatgttgatcctgaagccaaggtgatgcgagaagagatttt 62600583
Query: 654 tggacccattcttccaatagtgcctgtgaagaatgcagacgaagccgtaaaattcataaa 713
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62600584 tggacccattcttccaatagtgcctgtgaagaatgcagacgaagccgtaaaattcataaa 62600643
Query: 714 cgaacgtgaaaagcccctggctttctacgtattttctcgtaacaataag 762
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62600644 cgaacgtgaaaagcccctggctttctacgtattttctcgtaacaataag 62600692
Score = 278 bits (140), Expect = 1e-71
Identities = 143/144 (99%)
Strand = Plus / Plus
Query: 452 aggaattttatggagataatataaaagactctccggactatgaaaggatcgtcaatctcc 511
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62599386 aggaattttatggagataatataaaagactctccggactatgaaaggatcgtcaatctcc 62599445
Query: 512 gtcatttcaagaggatacagagcctgctcgagggacagaagatagccttcggtggggaga 571
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 62599446 gtcatttcaagaggatacagagtctgctcgagggacagaagatagccttcggtggggaga 62599505
Query: 572 cggacgaggccactcgctacatag 595
||||||||||||||||||||||||
Sbjct: 62599506 cggacgaggccactcgctacatag 62599529
Score = 242 bits (122), Expect = 6e-61
Identities = 122/122 (100%)
Strand = Plus / Plus
Query: 333 cagacgcatcgcctgggggaagtacatgaactgcgggcagacctgcatcgcccccgacta 392
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62597511 cagacgcatcgcctgggggaagtacatgaactgcgggcagacctgcatcgcccccgacta 62597570
Query: 393 cgtcctctgcgagccgtccctccaggaccaggtcgtgcagaagatgaaggaagccgtgaa 452
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62597571 cgtcctctgcgagccgtccctccaggaccaggtcgtgcagaagatgaaggaagccgtgaa 62597630
Query: 453 gg 454
||
Sbjct: 62597631 gg 62597632
Score = 206 bits (104), Expect = 3e-50
Identities = 104/104 (100%)
Strand = Plus / Plus
Query: 761 agctcatcaagcggatgatcgaggcgacgtcgagcgggggtgtcacgggcaacgacgtca 820
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62601941 agctcatcaagcggatgatcgaggcgacgtcgagcgggggtgtcacgggcaacgacgtca 62602000
Query: 821 tcatgcacttcatgctcagctccctgcccttcggaggcgtgggt 864
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62602001 tcatgcacttcatgctcagctccctgcccttcggaggcgtgggt 62602044
Score = 176 bits (89), Expect = 3e-41
Identities = 89/89 (100%)
Strand = Plus / Plus
Query: 39 aggaaacgcggtgattatcaaaccttccgaaatcagcgaaaatacagccaagatcttggc 98
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62594875 aggaaacgcggtgattatcaaaccttccgaaatcagcgaaaatacagccaagatcttggc 62594934
Query: 99 gaagctcctcccccagtatttagaccagg 127
|||||||||||||||||||||||||||||
Sbjct: 62594935 gaagctcctcccccagtatttagaccagg 62594963
Score = 77.8 bits (39), Expect = 2e-11
Identities = 39/39 (100%)
Strand = Plus / Plus
Query: 3 tctctccatccagcctctgataggagccatcgctgcagg 41
|||||||||||||||||||||||||||||||||||||||
Sbjct: 62594194 tctctccatccagcctctgataggagccatcgctgcagg 62594232
Score = 73.8 bits (37), Expect = 3e-10
Identities = 61/69 (88%)
Strand = Plus / Minus
Query: 333 cagacgcatcgcctgggggaagtacatgaactgcgggcagacctgcatcgcccccgacta 392
|||||||||||||||||| |||| ||||||| |||| ||||||||| | | |||||||||
Sbjct: 62642203 cagacgcatcgcctggggcaagttcatgaacagcggccagacctgcgtgggccccgacta 62642144
Query: 393 cgtcctctg 401
| |||||||
Sbjct: 62642143 catcctctg 62642135
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 49,844,371
Number of extensions: 374
Number of successful extensions: 374
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 371
Number of HSP's successfully gapped: 11
Length of query: 1984
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1962
Effective length of database: 2,808,408,574
Effective search space: 5510097622188
Effective search space used: 5510097622188
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)