Animal-Genome cDNA 20110601C-007407


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007407
         (1984 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001095454.1| fatty aldehyde dehydrogenase [Bos taurus].        605   e-173
Alignment   gi|NP_001159985.1| aldehyde dehydrogenase, dimeric NADP-preferr...   469   e-132
Alignment   gi|NP_001068986.1| aldehyde dehydrogenase family 3 member B1 [B...   374   e-103
Alignment   gi|XP_002699413.1| PREDICTED: similar to aldehyde dehydrogenase...   370   e-102
Alignment   gi|XP_585724.2| PREDICTED: similar to aldehyde dehydrogenase 3B...   370   e-102
Alignment   gi|XP_002696563.1| PREDICTED: aldehyde dehydrogenase family 1 s...   133   5e-31
Alignment   gi|XP_583647.3| PREDICTED: aldehyde dehydrogenase family 1 subf...   133   5e-31
Alignment   gi|NP_776664.1| retinal dehydrogenase 1 [Bos taurus].                124   4e-28
Alignment   gi|NP_001069094.1| aldehyde dehydrogenase family 8 member A1 [B...   118   2e-26
Alignment   gi|NP_001179664.1| succinate-semialdehyde dehydrogenase, mitoch...   118   2e-26

>ref|NP_001095454.1| fatty aldehyde dehydrogenase [Bos taurus].
          Length = 485

 Score =  605 bits (1561), Expect = e-173
 Identities = 293/347 (84%), Positives = 318/347 (91%)
 Frame = +1

Query: 4    LSIQPLXXXXXXXXXXXXKPSEISENTAKILAKLLPQYLDQDLYAVINGGVEETTKLLEQ 183
            L+IQPL            KPSE+SENTAK+LAKLLPQYLDQDLYAV+ GGVEETT+LL+Q
Sbjct: 117  LTIQPLIGAIAAGNAVIIKPSEVSENTAKLLAKLLPQYLDQDLYAVVTGGVEETTELLKQ 176

Query: 184  RFDHILYTGSTAVGKIVMEAAAKHLTPVTLELGGKSPCYIDPDCDLDVACRRIAWGKYMN 363
            RFDHILYTG+T VGKIVM+AAAKHLTPVTLELGGKSPCY+D DCDLDVACRRIAWGK+MN
Sbjct: 177  RFDHILYTGNTTVGKIVMQAAAKHLTPVTLELGGKSPCYVDRDCDLDVACRRIAWGKFMN 236

Query: 364  CGQTCIAPDYVLCEPSLQDQVVQKMKEAVKEFYGDNIKDSPDYERIVNLRHFKRIQSLLE 543
            CGQTCIAPDYVLCEPSLQD +VQK++EAVK FYG+N+K+SPDYERIVNLRHFKRIQSLLE
Sbjct: 237  CGQTCIAPDYVLCEPSLQDLIVQKVQEAVKGFYGENVKESPDYERIVNLRHFKRIQSLLE 296

Query: 544  GQKIAFGGETDEATRYIAPTILTDVDPEAKVMREEIFGPILPIVPVKNADEAVKFINERE 723
            GQKIAFGGE DEATRYIAPTILTDVDP  KVM+EEIFGPILPIVPVKNADEA++FINERE
Sbjct: 297  GQKIAFGGEMDEATRYIAPTILTDVDPGTKVMQEEIFGPILPIVPVKNADEAIQFINERE 356

Query: 724  KPLAFYVFSRNNKLIKRMIEATSSGGVTGNDVIMHFMLSSLPFGGVGSSGMGAYHGKHSF 903
            KPLAFYVFS N+KLIKRMI+ TSSGGVTGNDVIMHF LSSLPFGGVGSSGMGAYHGKHSF
Sbjct: 357  KPLAFYVFSHNSKLIKRMIDGTSSGGVTGNDVIMHFTLSSLPFGGVGSSGMGAYHGKHSF 416

Query: 904  ETFSHLRPCLLKSLKGEGANKLRYPPNSQSKVDWAKFFFLKRVSKGR 1044
            +TFSH RPCLLK+LK EG N+LRYPPNSQSKVDWAKFF LKR +K R
Sbjct: 417  DTFSHQRPCLLKTLKREGMNQLRYPPNSQSKVDWAKFFMLKRFNKER 463


>ref|NP_001159985.1| aldehyde dehydrogenase, dimeric NADP-preferring [Bos taurus].
          Length = 453

 Score =  469 bits (1207), Expect = e-132
 Identities = 216/327 (66%), Positives = 271/327 (82%)
 Frame = +1

Query: 4    LSIQPLXXXXXXXXXXXXKPSEISENTAKILAKLLPQYLDQDLYAVINGGVEETTKLLEQ 183
            L+IQP+            KPSE+SENTA +LA +LPQYLDQDLY VINGGV ETT++L++
Sbjct: 120  LTIQPMVGAIAAGNAVVLKPSELSENTASLLATILPQYLDQDLYPVINGGVAETTEVLKE 179

Query: 184  RFDHILYTGSTAVGKIVMEAAAKHLTPVTLELGGKSPCYIDPDCDLDVACRRIAWGKYMN 363
            RFDHIL+TGST VG++VM AAAKHLTPVTLELGGK+PCY+D DCDLD+ACRRIAWGK+MN
Sbjct: 180  RFDHILFTGSTGVGRVVMMAAAKHLTPVTLELGGKNPCYVDKDCDLDIACRRIAWGKFMN 239

Query: 364  CGQTCIAPDYVLCEPSLQDQVVQKMKEAVKEFYGDNIKDSPDYERIVNLRHFKRIQSLLE 543
             GQTC+APDY+LC+PS+Q QVV+K+K+++KEFYG++ K S DY RI+N RHF+R+  LLE
Sbjct: 240  SGQTCVAPDYILCDPSIQSQVVEKLKKSLKEFYGEDAKKSRDYGRIINSRHFQRVMGLLE 299

Query: 544  GQKIAFGGETDEATRYIAPTILTDVDPEAKVMREEIFGPILPIVPVKNADEAVKFINERE 723
            GQK+ +GG  D  TRYIAPTILTDVDPE+ VM+EE+FGP+LPI+ V++ +EA++FI +RE
Sbjct: 300  GQKVTYGGTGDATTRYIAPTILTDVDPESPVMQEEVFGPVLPIMCVRSLEEAIQFITQRE 359

Query: 724  KPLAFYVFSRNNKLIKRMIEATSSGGVTGNDVIMHFMLSSLPFGGVGSSGMGAYHGKHSF 903
            KPLA YVFS N+K+IK+MI  TSSGGVT NDV++H  + SLP+GGVG SGMG+YHG+ SF
Sbjct: 360  KPLALYVFSPNDKVIKKMIAETSSGGVTANDVVVHISVHSLPYGGVGDSGMGSYHGRKSF 419

Query: 904  ETFSHLRPCLLKSLKGEGANKLRYPPN 984
            ETFSH R CL++ L  E   K RYPP+
Sbjct: 420  ETFSHRRSCLVRPLLNEETLKARYPPS 446


>ref|NP_001068986.1| aldehyde dehydrogenase family 3 member B1 [Bos taurus].
          Length = 468

 Score =  374 bits (960), Expect = e-103
 Identities = 179/328 (54%), Positives = 237/328 (72%)
 Frame = +1

Query: 4    LSIQPLXXXXXXXXXXXXKPSEISENTAKILAKLLPQYLDQDLYAVINGGVEETTKLLEQ 183
            LS+ PL            KPSEIS+NT K+LA++LP+YLDQ  +AV+ GG +ET +LLE 
Sbjct: 120  LSLGPLVGALAAGNCVVLKPSEISKNTEKVLAEVLPRYLDQSCFAVVLGGPQETGRLLEH 179

Query: 184  RFDHILYTGSTAVGKIVMEAAAKHLTPVTLELGGKSPCYIDPDCDLDVACRRIAWGKYMN 363
            +FD+I +TG+  VGKIVM AAAKHLTPVTLELGGK+PCY+D +CD      R+A+ +  N
Sbjct: 180  KFDYIFFTGNPQVGKIVMTAAAKHLTPVTLELGGKNPCYVDDNCDPQTVANRVAFFRCFN 239

Query: 364  CGQTCIAPDYVLCEPSLQDQVVQKMKEAVKEFYGDNIKDSPDYERIVNLRHFKRIQSLLE 543
             GQTC+APDYVLC P +Q Q+V  ++ A+  FYGD+ + SP+  RI++ +HF+R++ LL 
Sbjct: 240  AGQTCVAPDYVLCSPEMQAQLVPALQSAITRFYGDDPQSSPNLGRIISQKHFQRLRGLLS 299

Query: 544  GQKIAFGGETDEATRYIAPTILTDVDPEAKVMREEIFGPILPIVPVKNADEAVKFINERE 723
              ++  GG++DE   YIAPT+L DV     VM+EEIFGPILPIV V++  +A+ FIN RE
Sbjct: 300  CGRVVIGGQSDECDLYIAPTVLVDVQETDPVMQEEIFGPILPIVNVRSLGQAIDFINRRE 359

Query: 724  KPLAFYVFSRNNKLIKRMIEATSSGGVTGNDVIMHFMLSSLPFGGVGSSGMGAYHGKHSF 903
            KPLA Y FS +++++KR++  TSSGG  GND  MH  L+SLPFGGVGSSGMG YHGK SF
Sbjct: 360  KPLALYAFSNSSQVVKRVLAQTSSGGFCGNDGFMHLTLASLPFGGVGSSGMGNYHGKFSF 419

Query: 904  ETFSHLRPCLLKSLKGEGANKLRYPPNS 987
            +TFSH R CLL+    E    +RYPP++
Sbjct: 420  DTFSHHRACLLRRPGLEKIYAIRYPPHT 447


>ref|XP_002699413.1| PREDICTED: similar to aldehyde dehydrogenase 3B1 [Bos taurus].
          Length = 486

 Score =  370 bits (950), Expect = e-102
 Identities = 181/338 (53%), Positives = 237/338 (70%), Gaps = 3/338 (0%)
 Frame = +1

Query: 4    LSIQPLXXXXXXXXXXXXKPSEISENTAKILAKLLPQYLDQDLYAVINGGVEETTKLLEQ 183
            LS+ PL            KPSEIS++T K+LAK+LP+YLDQ  +AV+ GG EET +LLE 
Sbjct: 140  LSLGPLVGALAAGNCVVLKPSEISKSTMKVLAKVLPRYLDQSCFAVVLGGPEETGRLLEH 199

Query: 184  RFDHILYTGSTAVGKIVMEAAAKHLTPVTLELGGKSPCYIDPDCDLDVACRRIAWGKYMN 363
            +FD+I +TGS  VGKIVM AAAKHLTPVTLELGGK+PCY+D +CD      R+A+ +  N
Sbjct: 200  KFDYIFFTGSPRVGKIVMAAAAKHLTPVTLELGGKNPCYVDDNCDPQTVANRVAFFRCFN 259

Query: 364  CGQTCIAPDYVLCEPSLQDQVVQKMKEAVKEFYGDNIKDSPDYERIVNLRHFKRIQSLLE 543
             GQTC+APDYVLC P +Q ++V  ++ A+  FYG++ + SPD  RI++ +HF+R++ LL 
Sbjct: 260  TGQTCVAPDYVLCSPEMQAKLVPALQSAITRFYGNDPQRSPDLGRIISQKHFQRLRGLLS 319

Query: 544  GQKIAFGGETDEATRYIAPTILTDVDPEAKVMREEIFGPILPIVPVKNADEAVKFINERE 723
              ++  GG++DE+  YIAPT+L DV     VM+EEIFGPILPIV V++ D+A+ FIN RE
Sbjct: 320  CGRVVIGGQSDESDLYIAPTVLVDVKETEPVMQEEIFGPILPIVNVRSLDQAIDFINRRE 379

Query: 724  KPLAFYVFSRNNKLIKRMIEATSSGGVTGNDVIMHFMLSSLPFGGVGSSGMGAYHGKHSF 903
            KPLA Y FS +++ +K+M++ TSSG   GN       L+SLPFGGVG SGMG YHGK SF
Sbjct: 380  KPLALYAFSNSSQAVKQMLDRTSSGNFAGNQGFTFLTLTSLPFGGVGQSGMGRYHGKFSF 439

Query: 904  ETFSHLRPCLLKSLKGEGANKLRYPPNS---QSKVDWA 1008
            +TFSH R CLL     E  N +RYPP S   Q  + WA
Sbjct: 440  DTFSHHRACLLSHPGLEMLNNIRYPPYSDFEQKLITWA 477


>ref|XP_585724.2| PREDICTED: similar to aldehyde dehydrogenase 3B1 isoform 1 [Bos
            taurus].
          Length = 486

 Score =  370 bits (950), Expect = e-102
 Identities = 181/338 (53%), Positives = 237/338 (70%), Gaps = 3/338 (0%)
 Frame = +1

Query: 4    LSIQPLXXXXXXXXXXXXKPSEISENTAKILAKLLPQYLDQDLYAVINGGVEETTKLLEQ 183
            LS+ PL            KPSEIS++T K+LAK+LP+YLDQ  +AV+ GG EET +LLE 
Sbjct: 140  LSLGPLVGALAAGNCVVLKPSEISKSTMKVLAKVLPRYLDQSCFAVVLGGPEETGRLLEH 199

Query: 184  RFDHILYTGSTAVGKIVMEAAAKHLTPVTLELGGKSPCYIDPDCDLDVACRRIAWGKYMN 363
            +FD+I +TGS  VGKIVM AAAKHLTPVTLELGGK+PCY+D +CD      R+A+ +  N
Sbjct: 200  KFDYIFFTGSPRVGKIVMAAAAKHLTPVTLELGGKNPCYVDDNCDPQTVANRVAFFRCFN 259

Query: 364  CGQTCIAPDYVLCEPSLQDQVVQKMKEAVKEFYGDNIKDSPDYERIVNLRHFKRIQSLLE 543
             GQTC+APDYVLC P +Q ++V  ++ A+  FYG++ + SPD  RI++ +HF+R++ LL 
Sbjct: 260  TGQTCVAPDYVLCSPEMQAKLVPALQSAITRFYGNDPQRSPDLGRIISQKHFQRLRGLLS 319

Query: 544  GQKIAFGGETDEATRYIAPTILTDVDPEAKVMREEIFGPILPIVPVKNADEAVKFINERE 723
              ++  GG++DE+  YIAPT+L DV     VM+EEIFGPILPIV V++ D+A+ FIN RE
Sbjct: 320  CGRVVIGGQSDESDLYIAPTVLVDVKETEPVMQEEIFGPILPIVNVRSLDQAIDFINRRE 379

Query: 724  KPLAFYVFSRNNKLIKRMIEATSSGGVTGNDVIMHFMLSSLPFGGVGSSGMGAYHGKHSF 903
            KPLA Y FS +++ +K+M++ TSSG   GN       L+SLPFGGVG SGMG YHGK SF
Sbjct: 380  KPLALYAFSNSSQAVKQMLDRTSSGNFAGNQGFTFLTLTSLPFGGVGQSGMGRYHGKFSF 439

Query: 904  ETFSHLRPCLLKSLKGEGANKLRYPPNS---QSKVDWA 1008
            +TFSH R CLL     E  N +RYPP S   Q  + WA
Sbjct: 440  DTFSHHRACLLSHPGLEMLNNIRYPPYSDFEQKLITWA 477


>ref|XP_002696563.1| PREDICTED: aldehyde dehydrogenase family 1 subfamily A3-like [Bos
            taurus].
          Length = 537

 Score =  133 bits (335), Expect = 5e-31
 Identities = 100/307 (32%), Positives = 150/307 (48%), Gaps = 13/307 (4%)
 Frame = +1

Query: 58   KPSEISENTAKILAKLLPQYLDQDLYAVINGGVEETTKLLEQRFDHI---LYTGSTAVGK 228
            KP+E +  TA  L  L+ +         I  G   T         HI    +TGST VGK
Sbjct: 229  KPAEQTPLTALYLGSLIKEVGFPPGVVNIVPGFGPTVGAAISSHPHINKIAFTGSTEVGK 288

Query: 229  IVMEAAA-KHLTPVTLELGGKSPCYI--DPDCDLDVACRRIAWGKYMNCGQTCIAPDYVL 399
            +V EAA+  +L  VTLELGGK+PC +  D DCDL V C     G + N GQ C A   V 
Sbjct: 289  LVKEAASHSNLKRVTLELGGKNPCIVCADADCDLAVECAH--QGVFFNQGQCCTAASRVF 346

Query: 400  CEPSLQDQVVQKMKE-AVKEFYGDNIKDSPDYERIVNLRHFKRIQSLLE-----GQKIAF 561
             E  + D+ V++  E A K   GD      +    ++ + F +I  L+E     G K+  
Sbjct: 347  VEEQVYDEFVRRSVEYAKKRPVGDPFDVRTEQGPQIDQKQFDKILDLIESGKKEGAKLEC 406

Query: 562  GGET-DEATRYIAPTILTDVDPEAKVMREEIFGPILPIVPVKNADEAVKFINEREKPLAF 738
            GG   ++   +I PT+ ++V    ++ +EEIFGP+ PI+  KN +E +K  N  E  L  
Sbjct: 407  GGSAMEDRGLFIKPTVFSEVTDTMRIAKEEIFGPVQPILKFKNIEEVIKRANSLEYGLTA 466

Query: 739  YVFSRNNKLIKRMIEATSSGGVTGNDVIMHFMLSSLPFGGVGSSGMGAYHGKHSFETFSH 918
             VF++N     ++  A  SG V  N    + + +  PFGG   SG G   G+++   ++ 
Sbjct: 467  AVFTKNLDKALKLASALESGTVWIN--CYNAIYAQAPFGGFKMSGNGRELGEYALAEYTE 524

Query: 919  LRPCLLK 939
            ++   +K
Sbjct: 525  VKTVTIK 531


>ref|XP_583647.3| PREDICTED: aldehyde dehydrogenase family 1 subfamily A3-like [Bos
            taurus].
          Length = 537

 Score =  133 bits (335), Expect = 5e-31
 Identities = 100/307 (32%), Positives = 150/307 (48%), Gaps = 13/307 (4%)
 Frame = +1

Query: 58   KPSEISENTAKILAKLLPQYLDQDLYAVINGGVEETTKLLEQRFDHI---LYTGSTAVGK 228
            KP+E +  TA  L  L+ +         I  G   T         HI    +TGST VGK
Sbjct: 229  KPAEQTPLTALYLGSLIKEVGFPPGVVNIVPGFGPTVGAAISSHPHINKIAFTGSTEVGK 288

Query: 229  IVMEAAA-KHLTPVTLELGGKSPCYI--DPDCDLDVACRRIAWGKYMNCGQTCIAPDYVL 399
            +V EAA+  +L  VTLELGGK+PC +  D DCDL V C     G + N GQ C A   V 
Sbjct: 289  LVKEAASHSNLKRVTLELGGKNPCIVCADADCDLAVECAH--QGVFFNQGQCCTAASRVF 346

Query: 400  CEPSLQDQVVQKMKE-AVKEFYGDNIKDSPDYERIVNLRHFKRIQSLLE-----GQKIAF 561
             E  + D+ V++  E A K   GD      +    ++ + F +I  L+E     G K+  
Sbjct: 347  VEEQVYDEFVRRSVEYAKKRPVGDPFDVRTEQGPQIDQKQFDKILDLIESGKKEGAKLEC 406

Query: 562  GGET-DEATRYIAPTILTDVDPEAKVMREEIFGPILPIVPVKNADEAVKFINEREKPLAF 738
            GG   ++   +I PT+ ++V    ++ +EEIFGP+ PI+  KN +E +K  N  E  L  
Sbjct: 407  GGSAMEDRGLFIKPTVFSEVTDTMRIAKEEIFGPVQPILKFKNIEEVIKRANSLEYGLTA 466

Query: 739  YVFSRNNKLIKRMIEATSSGGVTGNDVIMHFMLSSLPFGGVGSSGMGAYHGKHSFETFSH 918
             VF++N     ++  A  SG V  N    + + +  PFGG   SG G   G+++   ++ 
Sbjct: 467  AVFTKNLDKALKLASALESGTVWIN--CYNAIYAQAPFGGFKMSGNGRELGEYALAEYTE 524

Query: 919  LRPCLLK 939
            ++   +K
Sbjct: 525  VKTVTIK 531


>ref|NP_776664.1| retinal dehydrogenase 1 [Bos taurus].
          Length = 501

 Score =  124 bits (310), Expect = 4e-28
 Identities = 81/258 (31%), Positives = 132/258 (51%), Gaps = 8/258 (3%)
 Frame = +1

Query: 190  DHILYTGSTAVGKIVMEAAAK-HLTPVTLELGGKSPCYIDPDCDLDVACRRIAWGKYMNC 366
            D + +TGST VGK++ EAA K +L  V+LELGGKSPC +  D DLD A      G + + 
Sbjct: 240  DKVAFTGSTEVGKLIKEAAGKSNLKRVSLELGGKSPCIVFADADLDNAVEFAHQGVFYHQ 299

Query: 367  GQTCIAPDYVLCEPSLQDQVVQKMKEAVKEF-YGDNIKDSPDYERIVNLRHFKRIQSLL- 540
            GQ CIA   +  E S+ D+ V++  E  K++  G+ +         ++   +++I  L+ 
Sbjct: 300  GQCCIAASRLFVEESIYDEFVRRSVERAKKYVLGNPLTPGVSQGPQIDKEQYEKILDLIE 359

Query: 541  ----EGQKI-AFGGETDEATRYIAPTILTDVDPEAKVMREEIFGPILPIVPVKNADEAVK 705
                EG K+   GG       +I PT+ +DV  + ++ +EEIFGP+  I+  K+ D+ +K
Sbjct: 360  SGKKEGAKLECGGGPWGNKGYFIQPTVFSDVTDDMRIAKEEIFGPVQQIMKFKSLDDVIK 419

Query: 706  FINEREKPLAFYVFSRNNKLIKRMIEATSSGGVTGNDVIMHFMLSSLPFGGVGSSGMGAY 885
              N     L+  +F+ +      +  A  SG V  N      + +  PFGG   SG G  
Sbjct: 420  RANNTFYGLSAGIFTNDIDKAITVSSALQSGTVWVN--CYSVVSAQCPFGGFKMSGNGRE 477

Query: 886  HGKHSFETFSHLRPCLLK 939
             G++ F  ++ ++   +K
Sbjct: 478  LGEYGFHEYTEVKTVTIK 495


>ref|NP_001069094.1| aldehyde dehydrogenase family 8 member A1 [Bos taurus].
          Length = 487

 Score =  118 bits (295), Expect = 2e-26
 Identities = 85/311 (27%), Positives = 155/311 (49%), Gaps = 17/311 (5%)
 Frame = +1

Query: 58   KPSEISENTAKILAKLLPQY-LDQDLYAVINGGVEETTKLL--EQRFDHILYTGSTAVGK 228
            KPSE++  TA ++ +LL +  +   +  ++ G      + L        I +TGS    +
Sbjct: 178  KPSELTSVTAWMMCRLLEKAGVPPGVVNIVFGTGPRVGEALVSHPEVPLISFTGSQPTAE 237

Query: 229  IVMEAAAKHLTPVTLELGGKSPCYIDPDCDLDVACRRIAWGKYMNCGQTCIAPDYVLCEP 408
             +M+ +A H   ++LELGGK+P  I  D +L           + N G+ C+    +  + 
Sbjct: 238  RIMQLSAPHCKKLSLELGGKNPAVIFEDANLAECIPTTVRSSFANQGEICLCTSRIFVQR 297

Query: 409  SLQDQVVQKMKEAVKEF-YGDNIKDSPDYERIVNLRHFKRIQSLL-----EGQKIAFGGE 570
            S+  + +++  EA + +  G     S D   +++  H ++++S +     EG +I  G  
Sbjct: 298  SIYSEFLKRFVEAARMWKVGIPSDPSADMGALISKAHLEKVRSYIKKARMEGAQILCGEG 357

Query: 571  TD--------EATRYIAPTILTDVDPEAKVMREEIFGPILPIVPVKNADEAVKFINEREK 726
             D        +A  ++ PT++TDV  E+  M+EEIFGP+  +VP  + +E ++  N  + 
Sbjct: 358  VDKLNLPPRNQAGYFMLPTVITDVKDESCCMKEEIFGPVTCVVPFDSEEEVIQRANNVKY 417

Query: 727  PLAFYVFSRNNKLIKRMIEATSSGGVTGNDVIMHFMLSSLPFGGVGSSGMGAYHGKHSFE 906
             LA  V+S N   + R+ +   SG V  N  ++  +  +LPFGG+ SSG+G    K S+E
Sbjct: 418  GLAATVWSGNVGRVHRVAKKLQSGLVWTNCWLIREL--NLPFGGMKSSGVGREGAKDSYE 475

Query: 907  TFSHLRPCLLK 939
             F+ ++   +K
Sbjct: 476  FFTEVKTITVK 486


>ref|NP_001179664.1| succinate-semialdehyde dehydrogenase, mitochondrial [Bos taurus].
          Length = 526

 Score =  118 bits (295), Expect = 2e-26
 Identities = 82/303 (27%), Positives = 148/303 (48%), Gaps = 14/303 (4%)
 Frame = +1

Query: 58   KPSEISENTAKILAKLLPQY-LDQDLYAVINGGVEETTKLLEQR-----FDHILYTGSTA 219
            KP+E +  +A  LA+L  Q  +   +Y VI    ++  ++ E          I +TGSTA
Sbjct: 219  KPAEDTPFSALALAELANQAGIPPGVYNVIPCSQKKAKEVGEALCTDPLVSKISFTGSTA 278

Query: 220  VGKIVMEAAAKHLTPVTLELGGKSPCYIDPDCDLDVACRRIAWGKYMNCGQTCIAPDYVL 399
             GK+++  AA  +  V++ELGG +P  +    ++D A       K+ N GQTC+  +  L
Sbjct: 279  TGKVLLHHAANSVKRVSMELGGHAPFIVFDSANVDQAVAGAMASKFRNSGQTCVCSNRFL 338

Query: 400  CEPSLQDQVVQKMKEAVKE--FYGDNIKDSPDYERIVNLRHFKRIQ-----SLLEGQKIA 558
             +  + D  V+K  EA+K     G+   +      ++N +  ++++     ++ +G  + 
Sbjct: 339  VQSGIHDSFVKKFAEAIKTNLHVGNGFDERTTQGPLINAKAVEKVEKHVSDAISKGATVV 398

Query: 559  FGGETDEATR-YIAPTILTDVDPEAKVMREEIFGPILPIVPVKNADEAVKFINEREKPLA 735
             GG+     + +  PT+L++V  +    +EE FGP+ P++     +EAV   N     LA
Sbjct: 399  TGGKRHHVGKNFFEPTLLSNVTRDMLCSQEETFGPVAPVIKFNTEEEAVAIANAANVGLA 458

Query: 736  FYVFSRNNKLIKRMIEATSSGGVTGNDVIMHFMLSSLPFGGVGSSGMGAYHGKHSFETFS 915
             Y +S++   I R+ E    G V  N+ ++  +    PFGGV  SG+G    K+  + + 
Sbjct: 459  GYFYSQDPAQIWRVAERLEVGMVGVNEGLISSV--ECPFGGVKQSGLGREGSKYGIDEYL 516

Query: 916  HLR 924
             L+
Sbjct: 517  ELK 519


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 75,788,591
Number of extensions: 2241841
Number of successful extensions: 12291
Number of sequences better than 1.0e-05: 26
Number of HSP's gapped: 12123
Number of HSP's successfully gapped: 26
Length of query: 661
Length of database: 17,681,374
Length adjustment: 109
Effective length of query: 552
Effective length of database: 14,074,782
Effective search space: 7769279664
Effective search space used: 7769279664
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007407
         (1984 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_536656.2| PREDICTED: similar to Fatty aldehyde dehydrogen...   605   e-173
Alignment   gi|NP_001075889.1| aldehyde dehydrogenase, dimeric NADP-preferr...   467   e-131
Alignment   gi|XP_864201.1| PREDICTED: similar to aldehyde dehydrogenase 3B...   384   e-106
Alignment   gi|XP_533211.2| PREDICTED: similar to Aldehyde dehydrogenase 3B...   384   e-106
Alignment   gi|XP_864177.1| PREDICTED: similar to Aldehyde dehydrogenase 3B...   378   e-104
Alignment   gi|XP_854611.1| PREDICTED: similar to Aldehyde dehydrogenase 3B...   201   2e-51
Alignment   gi|XP_545823.2| PREDICTED: similar to leucine-rich repeat kinas...   128   2e-29
Alignment   gi|XP_535494.2| PREDICTED: similar to aldehyde dehydrogenase 1A...   118   2e-26
Alignment   gi|XP_533525.1| PREDICTED: similar to Retinal dehydrogenase 1 (...   117   4e-26
Alignment   gi|XP_533415.2| PREDICTED: similar to aldehyde dehydrogenase 8A...   114   3e-25

>ref|XP_536656.2| PREDICTED: similar to Fatty aldehyde dehydrogenase (Aldehyde
            dehydrogenase, microsomal) (Aldehyde dehydrogenase family
            3 member A2) [Canis familiaris].
          Length = 485

 Score =  605 bits (1560), Expect = e-173
 Identities = 290/347 (83%), Positives = 319/347 (91%)
 Frame = +1

Query: 4    LSIQPLXXXXXXXXXXXXKPSEISENTAKILAKLLPQYLDQDLYAVINGGVEETTKLLEQ 183
            L+IQPL            KPSE+SE TAKILA+LLP+YLDQDLY VINGGVEETT+LL+Q
Sbjct: 117  LTIQPLIGAIAAGNAVIIKPSELSEKTAKILAELLPRYLDQDLYVVINGGVEETTELLKQ 176

Query: 184  RFDHILYTGSTAVGKIVMEAAAKHLTPVTLELGGKSPCYIDPDCDLDVACRRIAWGKYMN 363
            RFDHILYTG+TAVGKIVMEAAAKHLTPVTLELGGKSPCY+D DCDLD+ACRRI WGKYMN
Sbjct: 177  RFDHILYTGNTAVGKIVMEAAAKHLTPVTLELGGKSPCYVDKDCDLDIACRRITWGKYMN 236

Query: 364  CGQTCIAPDYVLCEPSLQDQVVQKMKEAVKEFYGDNIKDSPDYERIVNLRHFKRIQSLLE 543
            CGQTCIAPDYVLCEPSLQ+Q+VQK+KE VKEFYG+NIK+SPDYERI+NLRHFKRI SLLE
Sbjct: 237  CGQTCIAPDYVLCEPSLQNQIVQKIKETVKEFYGENIKESPDYERIINLRHFKRILSLLE 296

Query: 544  GQKIAFGGETDEATRYIAPTILTDVDPEAKVMREEIFGPILPIVPVKNADEAVKFINERE 723
            GQKIAFGGETDEATRYIAPTIL+DVDPE++VM+EEIFGPILPIVPVKNADEA+KFIN RE
Sbjct: 297  GQKIAFGGETDEATRYIAPTILSDVDPESRVMQEEIFGPILPIVPVKNADEAIKFINSRE 356

Query: 724  KPLAFYVFSRNNKLIKRMIEATSSGGVTGNDVIMHFMLSSLPFGGVGSSGMGAYHGKHSF 903
            KPLAFY+FS N+KL+++MI  TSSGGVT NDVIMHF LSSLPFGGVGSSGMGAYHGK+SF
Sbjct: 357  KPLAFYIFSHNDKLVRQMINGTSSGGVTANDVIMHFTLSSLPFGGVGSSGMGAYHGKYSF 416

Query: 904  ETFSHLRPCLLKSLKGEGANKLRYPPNSQSKVDWAKFFFLKRVSKGR 1044
            +TFSH RPCLLKSLK EGANKLRYPPNSQSKVDWAKFF LKR +KG+
Sbjct: 417  DTFSHQRPCLLKSLKREGANKLRYPPNSQSKVDWAKFFILKRFNKGK 463


>ref|NP_001075889.1| aldehyde dehydrogenase, dimeric NADP-preferring [Canis lupus
            familiaris].
          Length = 453

 Score =  467 bits (1202), Expect = e-131
 Identities = 213/327 (65%), Positives = 276/327 (84%)
 Frame = +1

Query: 4    LSIQPLXXXXXXXXXXXXKPSEISENTAKILAKLLPQYLDQDLYAVINGGVEETTKLLEQ 183
            ++IQP+            KPSE+SEN A +LA ++PQYLD+DLY VI+GG+ ETT+LL++
Sbjct: 120  VTIQPMVGAIAAGNAVVIKPSELSENMANLLATIIPQYLDRDLYPVISGGIPETTELLKE 179

Query: 184  RFDHILYTGSTAVGKIVMEAAAKHLTPVTLELGGKSPCYIDPDCDLDVACRRIAWGKYMN 363
            RFDHILYTG+TAVGK++M AAAKHLTPVTLELGGK+PCY+D DCDLD+ACRRIAWGK+MN
Sbjct: 180  RFDHILYTGNTAVGKVIMMAAAKHLTPVTLELGGKNPCYVDKDCDLDIACRRIAWGKFMN 239

Query: 364  CGQTCIAPDYVLCEPSLQDQVVQKMKEAVKEFYGDNIKDSPDYERIVNLRHFKRIQSLLE 543
             GQTC+APDY+LC+PS+Q+Q+V+K+K+A+KEFYG++ K S DY RI+N RHF+R+  L+E
Sbjct: 240  SGQTCVAPDYILCDPSIQNQIVEKLKKALKEFYGEDAKKSRDYGRIINSRHFQRVMGLME 299

Query: 544  GQKIAFGGETDEATRYIAPTILTDVDPEAKVMREEIFGPILPIVPVKNADEAVKFINERE 723
            GQK+A+GG  D ATRYIAPTIL DVD +++VM+EEIFGP++PIV V++ +EA++FIN+RE
Sbjct: 300  GQKVAYGGTGDAATRYIAPTILIDVDTQSQVMQEEIFGPVMPIVCVRSLEEAIQFINQRE 359

Query: 724  KPLAFYVFSRNNKLIKRMIEATSSGGVTGNDVIMHFMLSSLPFGGVGSSGMGAYHGKHSF 903
            KPLA YVFS N+K+IK+MI  TSSGGVT NDVI+H  + SLP+GGVG+SGMG+YHGK SF
Sbjct: 360  KPLALYVFSLNDKMIKKMIAETSSGGVTANDVIVHVSVHSLPYGGVGNSGMGSYHGKKSF 419

Query: 904  ETFSHLRPCLLKSLKGEGANKLRYPPN 984
            ETFSH R CL++ L  + + K RYPP+
Sbjct: 420  ETFSHCRSCLVRPLLNDESLKTRYPPS 446


>ref|XP_864201.1| PREDICTED: similar to aldehyde dehydrogenase 3B1 isoform b isoform 3
            [Canis familiaris].
          Length = 431

 Score =  384 bits (985), Expect = e-106
 Identities = 182/328 (55%), Positives = 239/328 (72%)
 Frame = +1

Query: 4    LSIQPLXXXXXXXXXXXXKPSEISENTAKILAKLLPQYLDQDLYAVINGGVEETTKLLEQ 183
            L++ PL            KPSE S +T K+LA++LP+YLDQ  +AV+ GG +ET +LLE 
Sbjct: 83   LTLVPLVGALAAGNCVVLKPSEFSRSTEKVLAEVLPRYLDQSCFAVVLGGPQETGQLLEH 142

Query: 184  RFDHILYTGSTAVGKIVMEAAAKHLTPVTLELGGKSPCYIDPDCDLDVACRRIAWGKYMN 363
            +FD+I +TGS  VG+IVM AAAKHLTPVTLELGGK+PCY+D DCD      R+AW +Y N
Sbjct: 143  KFDYIFFTGSPRVGRIVMTAAAKHLTPVTLELGGKNPCYVDDDCDPQTVANRVAWFRYFN 202

Query: 364  CGQTCIAPDYVLCEPSLQDQVVQKMKEAVKEFYGDNIKDSPDYERIVNLRHFKRIQSLLE 543
            CGQTC+APDYVLC P  +++++  ++ A+  FYGD+ + SP   R+V+ +HF+R++ LL 
Sbjct: 203  CGQTCVAPDYVLCSPHTRERLLPALQSAITRFYGDDPRRSPSLGRVVSDKHFRRLRGLLG 262

Query: 544  GQKIAFGGETDEATRYIAPTILTDVDPEAKVMREEIFGPILPIVPVKNADEAVKFINERE 723
              ++A GG++DE  RYIAPT+L DV     VM+EEIFGPILPIV V + DEA+ FIN RE
Sbjct: 263  CGRVAIGGQSDEDERYIAPTVLVDVQETEPVMQEEIFGPILPIVNVGSLDEAIDFINRRE 322

Query: 724  KPLAFYVFSRNNKLIKRMIEATSSGGVTGNDVIMHFMLSSLPFGGVGSSGMGAYHGKHSF 903
            KPLA Y FSR+++++KR++  TSSGG  GND  MH  L+SLPFGGVG+SGMG+YHGK SF
Sbjct: 323  KPLALYAFSRSSQVVKRVLAQTSSGGFCGNDGFMHMTLASLPFGGVGASGMGSYHGKFSF 382

Query: 904  ETFSHLRPCLLKSLKGEGANKLRYPPNS 987
            +TFSH R CLL+    E    +RYPP S
Sbjct: 383  DTFSHHRACLLRRPGLEKIYSIRYPPYS 410


>ref|XP_533211.2| PREDICTED: similar to Aldehyde dehydrogenase 3B1 (Aldehyde
            dehydrogenase 7) isoform 1 [Canis familiaris].
          Length = 468

 Score =  384 bits (985), Expect = e-106
 Identities = 182/328 (55%), Positives = 239/328 (72%)
 Frame = +1

Query: 4    LSIQPLXXXXXXXXXXXXKPSEISENTAKILAKLLPQYLDQDLYAVINGGVEETTKLLEQ 183
            L++ PL            KPSE S +T K+LA++LP+YLDQ  +AV+ GG +ET +LLE 
Sbjct: 120  LTLVPLVGALAAGNCVVLKPSEFSRSTEKVLAEVLPRYLDQSCFAVVLGGPQETGQLLEH 179

Query: 184  RFDHILYTGSTAVGKIVMEAAAKHLTPVTLELGGKSPCYIDPDCDLDVACRRIAWGKYMN 363
            +FD+I +TGS  VG+IVM AAAKHLTPVTLELGGK+PCY+D DCD      R+AW +Y N
Sbjct: 180  KFDYIFFTGSPRVGRIVMTAAAKHLTPVTLELGGKNPCYVDDDCDPQTVANRVAWFRYFN 239

Query: 364  CGQTCIAPDYVLCEPSLQDQVVQKMKEAVKEFYGDNIKDSPDYERIVNLRHFKRIQSLLE 543
            CGQTC+APDYVLC P  +++++  ++ A+  FYGD+ + SP   R+V+ +HF+R++ LL 
Sbjct: 240  CGQTCVAPDYVLCSPHTRERLLPALQSAITRFYGDDPRRSPSLGRVVSDKHFRRLRGLLG 299

Query: 544  GQKIAFGGETDEATRYIAPTILTDVDPEAKVMREEIFGPILPIVPVKNADEAVKFINERE 723
              ++A GG++DE  RYIAPT+L DV     VM+EEIFGPILPIV V + DEA+ FIN RE
Sbjct: 300  CGRVAIGGQSDEDERYIAPTVLVDVQETEPVMQEEIFGPILPIVNVGSLDEAIDFINRRE 359

Query: 724  KPLAFYVFSRNNKLIKRMIEATSSGGVTGNDVIMHFMLSSLPFGGVGSSGMGAYHGKHSF 903
            KPLA Y FSR+++++KR++  TSSGG  GND  MH  L+SLPFGGVG+SGMG+YHGK SF
Sbjct: 360  KPLALYAFSRSSQVVKRVLAQTSSGGFCGNDGFMHMTLASLPFGGVGASGMGSYHGKFSF 419

Query: 904  ETFSHLRPCLLKSLKGEGANKLRYPPNS 987
            +TFSH R CLL+    E    +RYPP S
Sbjct: 420  DTFSHHRACLLRRPGLEKIYSIRYPPYS 447


>ref|XP_864177.1| PREDICTED: similar to Aldehyde dehydrogenase 3B1 (Aldehyde
            dehydrogenase 7) isoform 2 [Canis familiaris].
          Length = 472

 Score =  378 bits (970), Expect = e-104
 Identities = 182/332 (54%), Positives = 239/332 (71%), Gaps = 4/332 (1%)
 Frame = +1

Query: 4    LSIQPLXXXXXXXXXXXXKPSEISENTAKILAKLLPQYLDQDLYAVINGGVEETTKLLEQ 183
            L++ PL            KPSE S +T K+LA++LP+YLDQ  +AV+ GG +ET +LLE 
Sbjct: 120  LTLVPLVGALAAGNCVVLKPSEFSRSTEKVLAEVLPRYLDQSCFAVVLGGPQETGQLLEH 179

Query: 184  RFDHILYTG----STAVGKIVMEAAAKHLTPVTLELGGKSPCYIDPDCDLDVACRRIAWG 351
            +FD+I +TG    S  VG+IVM AAAKHLTPVTLELGGK+PCY+D DCD      R+AW 
Sbjct: 180  KFDYIFFTGKHLGSPRVGRIVMTAAAKHLTPVTLELGGKNPCYVDDDCDPQTVANRVAWF 239

Query: 352  KYMNCGQTCIAPDYVLCEPSLQDQVVQKMKEAVKEFYGDNIKDSPDYERIVNLRHFKRIQ 531
            +Y NCGQTC+APDYVLC P  +++++  ++ A+  FYGD+ + SP   R+V+ +HF+R++
Sbjct: 240  RYFNCGQTCVAPDYVLCSPHTRERLLPALQSAITRFYGDDPRRSPSLGRVVSDKHFRRLR 299

Query: 532  SLLEGQKIAFGGETDEATRYIAPTILTDVDPEAKVMREEIFGPILPIVPVKNADEAVKFI 711
             LL   ++A GG++DE  RYIAPT+L DV     VM+EEIFGPILPIV V + DEA+ FI
Sbjct: 300  GLLGCGRVAIGGQSDEDERYIAPTVLVDVQETEPVMQEEIFGPILPIVNVGSLDEAIDFI 359

Query: 712  NEREKPLAFYVFSRNNKLIKRMIEATSSGGVTGNDVIMHFMLSSLPFGGVGSSGMGAYHG 891
            N REKPLA Y FSR+++++KR++  TSSGG  GND  MH  L+SLPFGGVG+SGMG+YHG
Sbjct: 360  NRREKPLALYAFSRSSQVVKRVLAQTSSGGFCGNDGFMHMTLASLPFGGVGASGMGSYHG 419

Query: 892  KHSFETFSHLRPCLLKSLKGEGANKLRYPPNS 987
            K SF+TFSH R CLL+    E    +RYPP S
Sbjct: 420  KFSFDTFSHHRACLLRRPGLEKIYSIRYPPYS 451


>ref|XP_854611.1| PREDICTED: similar to Aldehyde dehydrogenase 3B1 (Aldehyde
            dehydrogenase 7) [Canis familiaris].
          Length = 626

 Score =  201 bits (511), Expect = 2e-51
 Identities = 122/323 (37%), Positives = 168/323 (52%), Gaps = 7/323 (2%)
 Frame = +1

Query: 58   KPSEISENTAKILAKLLPQYLDQDLYAVINGGVEETTKLLEQRFDHILYTGSTAVGKIVM 237
            KPSE+S++T K+LA++LPQYLDQ  +AV+ GG +ET +LLE +FD+I + GS  VG+IVM
Sbjct: 138  KPSELSKSTEKVLAEVLPQYLDQSCFAVVLGGPQETRQLLEHKFDYIFFPGSPRVGRIVM 197

Query: 238  EAAAKHLTPVTLELGGKSPCYIDPDCDLDVACRRIAWGKYMNCGQTCIAPDYVLCEPSLQ 417
             AAAKHLTPVTLELGGK+PCY+D DCD      R+AW +Y NCGQTC+ PDY LC P   
Sbjct: 198  TAAAKHLTPVTLELGGKNPCYVDDDCDPQTVANRVAWFRYFNCGQTCVVPDYALCSPH-- 255

Query: 418  DQVVQKMKEAVKEFYGDNIKDSPDYERIVNLRHFKRIQSLLEGQKIAFGGETDEATRYIA 597
                                          L   +R++ LL   ++A GG++D   R  A
Sbjct: 256  -----------------------------TLGRVRRLRGLLGCGRVAIGGQSD---RTSA 283

Query: 598  PTILTDVDPEAKV----MREEIFGPILPIVPVKNADEAVKFINEREKPLAFYVFSRNNKL 765
            P+++T +  +         +      L  +P+ + DE    +    +P           L
Sbjct: 284  PSVVTQMLHQTSSGIVGGNQGFIHLTLSTLPLGSVDEPCPPLEPPPRP-------PPPSL 336

Query: 766  IKRMIEATSSGGVTGNDVIMHFMLSSLPFGGVGSSGMGAYHGKHSFETFSHLRPCLLKSL 945
               +  +        ND +       LP     +SG+G YHGK SF+TFSH R  LL S 
Sbjct: 337  GLALDFSKPRFSYLQNDSLSGLAFPELP--ASCNSGIGRYHGKFSFDTFSHHRASLLSSS 394

Query: 946  KGEGANKLRYPP---NSQSKVDW 1005
              E  N+L YPP   +SQ  + W
Sbjct: 395  GLEKLNELHYPPYTAHSQKLITW 417


>ref|XP_545823.2| PREDICTED: similar to leucine-rich repeat kinase 1 [Canis
            familiaris].
          Length = 2787

 Score =  128 bits (321), Expect = 2e-29
 Identities = 95/285 (33%), Positives = 139/285 (48%), Gaps = 11/285 (3%)
 Frame = +1

Query: 58   KPSEISENTAKILAKLLPQYLDQDLYAVINGGVEETTKLLEQRFDHI---LYTGSTAVGK 228
            KP+E +  TA  L  L+ +         I  G   T         HI    +TGST VGK
Sbjct: 444  KPAEQTPLTALYLGSLIKEVGFPPGVVNIVPGFGPTVGAAISSHPHISKIAFTGSTEVGK 503

Query: 229  IVMEAAAK-HLTPVTLELGGKSPCYIDPDCDLDVACRRIAWGKYMNCGQTCIAPDYVLCE 405
            +V EAA++ +L  VTLELGGK+PC +  D DLD+A      G + N GQ C A   V  E
Sbjct: 504  LVKEAASRSNLKRVTLELGGKNPCIVCADADLDLAVECAHQGVFFNQGQCCTAASRVFVE 563

Query: 406  PSLQDQVVQKMKE-AVKEFYGDNIKDSPDYERIVNLRHFKRIQSLLE-----GQKIAFGG 567
              +  + V++  E A K   GD      +    ++ + F +I  L+E     G K+  GG
Sbjct: 564  EQIYPEFVRRSVEYAKKRPIGDPFDIRTEQGPQIDQKQFDKILDLIESGKKEGAKLECGG 623

Query: 568  ET-DEATRYIAPTILTDVDPEAKVMREEIFGPILPIVPVKNADEAVKFINEREKPLAFYV 744
               ++   +I PT+ ++V    ++ +EEIFGP+ PI+  KN +E +K  N  E  L   V
Sbjct: 624  SAMEDRGLFIKPTVFSEVTDTMRIAKEEIFGPVQPILKFKNIEEVIKRANSLEYGLTAAV 683

Query: 745  FSRNNKLIKRMIEATSSGGVTGNDVIMHFMLSSLPFGGVGSSGMG 879
            F++N     ++  A  SG V  N    + + +  PFGG   SG G
Sbjct: 684  FTKNLDKALKLASALESGTVWIN--CYNAIYAQAPFGGFKMSGNG 726


>ref|XP_535494.2| PREDICTED: similar to aldehyde dehydrogenase 1A2 isoform 1 isoform 1
            [Canis familiaris].
          Length = 518

 Score =  118 bits (295), Expect = 2e-26
 Identities = 79/258 (30%), Positives = 130/258 (50%), Gaps = 8/258 (3%)
 Frame = +1

Query: 190  DHILYTGSTAVGKIVMEAAAK-HLTPVTLELGGKSPCYIDPDCDLDVACRRIAWGKYMNC 366
            D I +TGST VGK++ EAA + +L  VTLELGGKSP  I  D DLD A  +   G + N 
Sbjct: 257  DKIAFTGSTEVGKLIQEAAGRSNLKRVTLELGGKSPNIIFADADLDYAVEQAHQGVFFNQ 316

Query: 367  GQTCIAPDYVLCEPSLQDQVVQK-MKEAVKEFYGDNIKDSPDYERIVNLRHFKRIQSLL- 540
            GQ C A   +  E S+ ++ V++ ++ A +   G     + +    ++ + + +I  L+ 
Sbjct: 317  GQCCTAGSRIFVEESIYEEFVRRSVERAKRRIVGSPFDPTTEQGPQIDKKQYNKILELIQ 376

Query: 541  ----EGQKIAFGGE-TDEATRYIAPTILTDVDPEAKVMREEIFGPILPIVPVKNADEAVK 705
                EG K+  GG+       +I PT+ ++V  + ++ +EEIFGP+  I+  K  DE ++
Sbjct: 377  SGVAEGAKLECGGKGLGRKGFFIEPTVFSNVTDDMRIAKEEIFGPVQEILRFKTMDEVIE 436

Query: 706  FINEREKPLAFYVFSRNNKLIKRMIEATSSGGVTGNDVIMHFMLSSLPFGGVGSSGMGAY 885
              N  +  L   VF+ +      +  A  +G V  N    + + +  PFGG   SG G  
Sbjct: 437  RANNSDFGLVAAVFTNDINKALTVSSAMQAGTVWIN--CYNALNAQSPFGGFKMSGNGRE 494

Query: 886  HGKHSFETFSHLRPCLLK 939
             G+     +S ++   +K
Sbjct: 495  MGEFGLREYSEVKTVTVK 512


>ref|XP_533525.1| PREDICTED: similar to Retinal dehydrogenase 1 (RalDH1) (RALDH 1)
            (Aldehyde dehydrogenase family 1 member A1) (Aldehyde
            dehydrogenase, cytosolic) (ALHDII) (ALDH-E1) isoform 1
            [Canis familiaris].
          Length = 501

 Score =  117 bits (293), Expect = 4e-26
 Identities = 79/258 (30%), Positives = 131/258 (50%), Gaps = 8/258 (3%)
 Frame = +1

Query: 190  DHILYTGSTAVGKIVMEAAAK-HLTPVTLELGGKSPCYIDPDCDLDVACRRIAWGKYMNC 366
            D + +TGST VGK++ EAA K +L  VTLELGGKSP  +  D DLD A        + + 
Sbjct: 240  DKVAFTGSTEVGKMIKEAAGKSNLKRVTLELGGKSPFIVFADSDLDSAVEVAHQALFYHQ 299

Query: 367  GQTCIAPDYVLCEPSLQDQVVQKMKEAVKEF-YGDNIKDSPDYERIVNLRHFKRIQSLL- 540
            GQ CIA   +  E S+ D+ V++  E  K++  G+ +         ++ + +++I  L+ 
Sbjct: 300  GQCCIAASRLFVEESIYDEFVRRSVERAKKYVLGNPLTPGVSQGPQIDKKQYEKILDLIE 359

Query: 541  ----EGQKI-AFGGETDEATRYIAPTILTDVDPEAKVMREEIFGPILPIVPVKNADEAVK 705
                EG K+   GG       +I PT+ ++V  E ++ +EEIFGP+  I+  K+ D+ +K
Sbjct: 360  SGKKEGAKLECGGGPWGNKGFFIQPTVFSNVTDEMRIAKEEIFGPVQQIMKFKSLDDVIK 419

Query: 706  FINEREKPLAFYVFSRNNKLIKRMIEATSSGGVTGNDVIMHFMLSSLPFGGVGSSGMGAY 885
              N     LA  +F+++      +  A  +G V  N      +    PFGG   SG G  
Sbjct: 420  RANNTHYGLAAGIFTKDIDKAITVSSALQAGTVWVN--CYSVVSPQCPFGGFKMSGNGRE 477

Query: 886  HGKHSFETFSHLRPCLLK 939
             G++  + ++ ++   +K
Sbjct: 478  LGEYGLQEYTEVKMVTMK 495


>ref|XP_533415.2| PREDICTED: similar to aldehyde dehydrogenase 8A1 isoform 1 isoform 1
            [Canis familiaris].
          Length = 487

 Score =  114 bits (286), Expect = 3e-25
 Identities = 82/311 (26%), Positives = 153/311 (49%), Gaps = 17/311 (5%)
 Frame = +1

Query: 58   KPSEISENTAKILAKLLPQY-LDQDLYAVINGGVEETTKLL--EQRFDHILYTGSTAVGK 228
            KPSE++  TA ++ KLL +  +   +  ++ G      + L        I +TGS    +
Sbjct: 178  KPSELTSVTAWMMCKLLEKAGVPPGVVNIVFGTGPRVGEALVAHPEVPLISFTGSQPTAE 237

Query: 229  IVMEAAAKHLTPVTLELGGKSPCYIDPDCDLDVACRRIAWGKYMNCGQTCIAPDYVLCEP 408
             ++  +A H   ++LELGGK+P  I  D +L+          + N G+ C+    +  + 
Sbjct: 238  RIIHLSAPHCKKLSLELGGKNPAIIFEDANLEECIPTTVKSSFANQGEICLCTSRIFVQR 297

Query: 409  SLQDQVVQKMKEAVKEF-YGDNIKDSPDYERIVNLRHFKRIQSLL-----EGQKIAFGGE 570
            S+ ++ ++K  EA + +  G           +++  H ++++S +     EG +I  G  
Sbjct: 298  SIYEEFLEKFVEATRRWKVGIPSDPLASMGALISKAHLEKVRSYIKKARSEGAQILCGEG 357

Query: 571  TD--------EATRYIAPTILTDVDPEAKVMREEIFGPILPIVPVKNADEAVKFINEREK 726
             D        +   ++ PT++T +  E+  M+EEIFGP+  +VP  + +E ++  N  + 
Sbjct: 358  VDTLSLPAKNQGGYFMLPTVITHIKDESCCMKEEIFGPVTCVVPFDSEEEVIQRANSVKY 417

Query: 727  PLAFYVFSRNNKLIKRMIEATSSGGVTGNDVIMHFMLSSLPFGGVGSSGMGAYHGKHSFE 906
             LA  V+S N   + R+ +   SG V  N  ++  +  +LPFGG+ SSG+G   GK S+E
Sbjct: 418  GLAATVWSCNVGRVHRVAKKLQSGLVWTNCWLIREL--NLPFGGMKSSGVGREGGKDSYE 475

Query: 907  TFSHLRPCLLK 939
             F+ ++   +K
Sbjct: 476  FFTEVKTITIK 486


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 79,495,966
Number of extensions: 2340710
Number of successful extensions: 12806
Number of sequences better than 1.0e-05: 27
Number of HSP's gapped: 12593
Number of HSP's successfully gapped: 28
Length of query: 661
Length of database: 18,874,504
Length adjustment: 109
Effective length of query: 552
Effective length of database: 15,240,880
Effective search space: 8412965760
Effective search space used: 8412965760
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007407
         (1984 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_000373.1| fatty aldehyde dehydrogenase isoform 2 [Homo sa...   599   e-171
Alignment   gi|NP_001026976.1| fatty aldehyde dehydrogenase isoform 1 [Homo...   599   e-171
Alignment   gi|NP_001128640.1| aldehyde dehydrogenase, dimeric NADP-preferr...   473   e-133
Alignment   gi|NP_001128639.1| aldehyde dehydrogenase, dimeric NADP-preferr...   473   e-133
Alignment   gi|NP_000682.3| aldehyde dehydrogenase, dimeric NADP-preferring...   473   e-133
Alignment   gi|NP_001154945.1| aldehyde dehydrogenase family 3 member B1 is...   392   e-109
Alignment   gi|NP_001025181.1| aldehyde dehydrogenase family 3 member B1 is...   392   e-109
Alignment   gi|NP_000685.1| aldehyde dehydrogenase family 3 member B1 isofo...   392   e-109
Alignment   gi|NP_001026786.1| aldehyde dehydrogenase family 3 member B2 [H...   362   e-100
Alignment   gi|NP_000686.2| aldehyde dehydrogenase family 3 member B2 [Homo...   362   e-100

>ref|NP_000373.1| fatty aldehyde dehydrogenase isoform 2 [Homo sapiens].
          Length = 485

 Score =  599 bits (1544), Expect = e-171
 Identities = 289/345 (83%), Positives = 311/345 (90%)
 Frame = +1

Query: 4    LSIQPLXXXXXXXXXXXXKPSEISENTAKILAKLLPQYLDQDLYAVINGGVEETTKLLEQ 183
            L+IQPL            KPSE+SENTAKILAKLLPQYLDQDLY VINGGVEETT+LL+Q
Sbjct: 117  LTIQPLIGAIAAGNAVIIKPSELSENTAKILAKLLPQYLDQDLYIVINGGVEETTELLKQ 176

Query: 184  RFDHILYTGSTAVGKIVMEAAAKHLTPVTLELGGKSPCYIDPDCDLDVACRRIAWGKYMN 363
            RFDHI YTG+TAVGKIVMEAAAKHLTPVTLELGGKSPCYID DCDLD+ CRRI WGKYMN
Sbjct: 177  RFDHIFYTGNTAVGKIVMEAAAKHLTPVTLELGGKSPCYIDKDCDLDIVCRRITWGKYMN 236

Query: 364  CGQTCIAPDYVLCEPSLQDQVVQKMKEAVKEFYGDNIKDSPDYERIVNLRHFKRIQSLLE 543
            CGQTCIAPDY+LCE SLQ+Q+V K+KE VKEFYG+NIK+SPDYERI+NLRHFKRI SLLE
Sbjct: 237  CGQTCIAPDYILCEASLQNQIVWKIKETVKEFYGENIKESPDYERIINLRHFKRILSLLE 296

Query: 544  GQKIAFGGETDEATRYIAPTILTDVDPEAKVMREEIFGPILPIVPVKNADEAVKFINERE 723
            GQKIAFGGETDEATRYIAPT+LTDVDP+ KVM+EEIFGPILPIVPVKN DEA+ FINERE
Sbjct: 297  GQKIAFGGETDEATRYIAPTVLTDVDPKTKVMQEEIFGPILPIVPVKNVDEAINFINERE 356

Query: 724  KPLAFYVFSRNNKLIKRMIEATSSGGVTGNDVIMHFMLSSLPFGGVGSSGMGAYHGKHSF 903
            KPLA YVFS N+KLIKRMI+ TSSGGVTGNDVIMHF L+S PFGGVGSSGMGAYHGKHSF
Sbjct: 357  KPLALYVFSHNHKLIKRMIDETSSGGVTGNDVIMHFTLNSFPFGGVGSSGMGAYHGKHSF 416

Query: 904  ETFSHLRPCLLKSLKGEGANKLRYPPNSQSKVDWAKFFFLKRVSK 1038
            +TFSH RPCLLKSLK EGANKLRYPPNSQSKVDW KFF LKR +K
Sbjct: 417  DTFSHQRPCLLKSLKREGANKLRYPPNSQSKVDWGKFFLLKRFNK 461


>ref|NP_001026976.1| fatty aldehyde dehydrogenase isoform 1 [Homo sapiens].
          Length = 508

 Score =  599 bits (1544), Expect = e-171
 Identities = 289/345 (83%), Positives = 311/345 (90%)
 Frame = +1

Query: 4    LSIQPLXXXXXXXXXXXXKPSEISENTAKILAKLLPQYLDQDLYAVINGGVEETTKLLEQ 183
            L+IQPL            KPSE+SENTAKILAKLLPQYLDQDLY VINGGVEETT+LL+Q
Sbjct: 117  LTIQPLIGAIAAGNAVIIKPSELSENTAKILAKLLPQYLDQDLYIVINGGVEETTELLKQ 176

Query: 184  RFDHILYTGSTAVGKIVMEAAAKHLTPVTLELGGKSPCYIDPDCDLDVACRRIAWGKYMN 363
            RFDHI YTG+TAVGKIVMEAAAKHLTPVTLELGGKSPCYID DCDLD+ CRRI WGKYMN
Sbjct: 177  RFDHIFYTGNTAVGKIVMEAAAKHLTPVTLELGGKSPCYIDKDCDLDIVCRRITWGKYMN 236

Query: 364  CGQTCIAPDYVLCEPSLQDQVVQKMKEAVKEFYGDNIKDSPDYERIVNLRHFKRIQSLLE 543
            CGQTCIAPDY+LCE SLQ+Q+V K+KE VKEFYG+NIK+SPDYERI+NLRHFKRI SLLE
Sbjct: 237  CGQTCIAPDYILCEASLQNQIVWKIKETVKEFYGENIKESPDYERIINLRHFKRILSLLE 296

Query: 544  GQKIAFGGETDEATRYIAPTILTDVDPEAKVMREEIFGPILPIVPVKNADEAVKFINERE 723
            GQKIAFGGETDEATRYIAPT+LTDVDP+ KVM+EEIFGPILPIVPVKN DEA+ FINERE
Sbjct: 297  GQKIAFGGETDEATRYIAPTVLTDVDPKTKVMQEEIFGPILPIVPVKNVDEAINFINERE 356

Query: 724  KPLAFYVFSRNNKLIKRMIEATSSGGVTGNDVIMHFMLSSLPFGGVGSSGMGAYHGKHSF 903
            KPLA YVFS N+KLIKRMI+ TSSGGVTGNDVIMHF L+S PFGGVGSSGMGAYHGKHSF
Sbjct: 357  KPLALYVFSHNHKLIKRMIDETSSGGVTGNDVIMHFTLNSFPFGGVGSSGMGAYHGKHSF 416

Query: 904  ETFSHLRPCLLKSLKGEGANKLRYPPNSQSKVDWAKFFFLKRVSK 1038
            +TFSH RPCLLKSLK EGANKLRYPPNSQSKVDW KFF LKR +K
Sbjct: 417  DTFSHQRPCLLKSLKREGANKLRYPPNSQSKVDWGKFFLLKRFNK 461


>ref|NP_001128640.1| aldehyde dehydrogenase, dimeric NADP-preferring [Homo sapiens].
          Length = 453

 Score =  473 bits (1218), Expect = e-133
 Identities = 219/327 (66%), Positives = 275/327 (84%)
 Frame = +1

Query: 4    LSIQPLXXXXXXXXXXXXKPSEISENTAKILAKLLPQYLDQDLYAVINGGVEETTKLLEQ 183
            L+IQP+            KPSE+SEN A +LA ++PQYLD+DLY VINGGV ETT+LL++
Sbjct: 120  LTIQPMVGAIAAGNSVVLKPSELSENMASLLATIIPQYLDKDLYPVINGGVPETTELLKE 179

Query: 184  RFDHILYTGSTAVGKIVMEAAAKHLTPVTLELGGKSPCYIDPDCDLDVACRRIAWGKYMN 363
            RFDHILYTGST VGKI+M AAAKHLTPVTLELGGKSPCY+D +CDLDVACRRIAWGK+MN
Sbjct: 180  RFDHILYTGSTGVGKIIMTAAAKHLTPVTLELGGKSPCYVDKNCDLDVACRRIAWGKFMN 239

Query: 364  CGQTCIAPDYVLCEPSLQDQVVQKMKEAVKEFYGDNIKDSPDYERIVNLRHFKRIQSLLE 543
             GQTC+APDY+LC+PS+Q+Q+V+K+K+++KEFYG++ K S DY RI++ RHF+R+  L+E
Sbjct: 240  SGQTCVAPDYILCDPSIQNQIVEKLKKSLKEFYGEDAKKSRDYGRIISARHFQRVMGLIE 299

Query: 544  GQKIAFGGETDEATRYIAPTILTDVDPEAKVMREEIFGPILPIVPVKNADEAVKFINERE 723
            GQK+A+GG  D ATRYIAPTILTDVDP++ VM+EEIFGP+LPIV V++ +EA++FIN+RE
Sbjct: 300  GQKVAYGGTGDAATRYIAPTILTDVDPQSPVMQEEIFGPVLPIVCVRSLEEAIQFINQRE 359

Query: 724  KPLAFYVFSRNNKLIKRMIEATSSGGVTGNDVIMHFMLSSLPFGGVGSSGMGAYHGKHSF 903
            KPLA Y+FS N+K+IK+MI  TSSGGV  NDVI+H  L SLPFGGVG+SGMG+YHGK SF
Sbjct: 360  KPLALYMFSSNDKVIKKMIAETSSGGVAANDVIVHITLHSLPFGGVGNSGMGSYHGKKSF 419

Query: 904  ETFSHLRPCLLKSLKGEGANKLRYPPN 984
            ETFSH R CL++ L  +   K+RYPP+
Sbjct: 420  ETFSHRRSCLVRPLMNDEGLKVRYPPS 446


>ref|NP_001128639.1| aldehyde dehydrogenase, dimeric NADP-preferring [Homo sapiens].
          Length = 453

 Score =  473 bits (1218), Expect = e-133
 Identities = 219/327 (66%), Positives = 275/327 (84%)
 Frame = +1

Query: 4    LSIQPLXXXXXXXXXXXXKPSEISENTAKILAKLLPQYLDQDLYAVINGGVEETTKLLEQ 183
            L+IQP+            KPSE+SEN A +LA ++PQYLD+DLY VINGGV ETT+LL++
Sbjct: 120  LTIQPMVGAIAAGNSVVLKPSELSENMASLLATIIPQYLDKDLYPVINGGVPETTELLKE 179

Query: 184  RFDHILYTGSTAVGKIVMEAAAKHLTPVTLELGGKSPCYIDPDCDLDVACRRIAWGKYMN 363
            RFDHILYTGST VGKI+M AAAKHLTPVTLELGGKSPCY+D +CDLDVACRRIAWGK+MN
Sbjct: 180  RFDHILYTGSTGVGKIIMTAAAKHLTPVTLELGGKSPCYVDKNCDLDVACRRIAWGKFMN 239

Query: 364  CGQTCIAPDYVLCEPSLQDQVVQKMKEAVKEFYGDNIKDSPDYERIVNLRHFKRIQSLLE 543
             GQTC+APDY+LC+PS+Q+Q+V+K+K+++KEFYG++ K S DY RI++ RHF+R+  L+E
Sbjct: 240  SGQTCVAPDYILCDPSIQNQIVEKLKKSLKEFYGEDAKKSRDYGRIISARHFQRVMGLIE 299

Query: 544  GQKIAFGGETDEATRYIAPTILTDVDPEAKVMREEIFGPILPIVPVKNADEAVKFINERE 723
            GQK+A+GG  D ATRYIAPTILTDVDP++ VM+EEIFGP+LPIV V++ +EA++FIN+RE
Sbjct: 300  GQKVAYGGTGDAATRYIAPTILTDVDPQSPVMQEEIFGPVLPIVCVRSLEEAIQFINQRE 359

Query: 724  KPLAFYVFSRNNKLIKRMIEATSSGGVTGNDVIMHFMLSSLPFGGVGSSGMGAYHGKHSF 903
            KPLA Y+FS N+K+IK+MI  TSSGGV  NDVI+H  L SLPFGGVG+SGMG+YHGK SF
Sbjct: 360  KPLALYMFSSNDKVIKKMIAETSSGGVAANDVIVHITLHSLPFGGVGNSGMGSYHGKKSF 419

Query: 904  ETFSHLRPCLLKSLKGEGANKLRYPPN 984
            ETFSH R CL++ L  +   K+RYPP+
Sbjct: 420  ETFSHRRSCLVRPLMNDEGLKVRYPPS 446


>ref|NP_000682.3| aldehyde dehydrogenase, dimeric NADP-preferring [Homo sapiens].
          Length = 453

 Score =  473 bits (1218), Expect = e-133
 Identities = 219/327 (66%), Positives = 275/327 (84%)
 Frame = +1

Query: 4    LSIQPLXXXXXXXXXXXXKPSEISENTAKILAKLLPQYLDQDLYAVINGGVEETTKLLEQ 183
            L+IQP+            KPSE+SEN A +LA ++PQYLD+DLY VINGGV ETT+LL++
Sbjct: 120  LTIQPMVGAIAAGNSVVLKPSELSENMASLLATIIPQYLDKDLYPVINGGVPETTELLKE 179

Query: 184  RFDHILYTGSTAVGKIVMEAAAKHLTPVTLELGGKSPCYIDPDCDLDVACRRIAWGKYMN 363
            RFDHILYTGST VGKI+M AAAKHLTPVTLELGGKSPCY+D +CDLDVACRRIAWGK+MN
Sbjct: 180  RFDHILYTGSTGVGKIIMTAAAKHLTPVTLELGGKSPCYVDKNCDLDVACRRIAWGKFMN 239

Query: 364  CGQTCIAPDYVLCEPSLQDQVVQKMKEAVKEFYGDNIKDSPDYERIVNLRHFKRIQSLLE 543
             GQTC+APDY+LC+PS+Q+Q+V+K+K+++KEFYG++ K S DY RI++ RHF+R+  L+E
Sbjct: 240  SGQTCVAPDYILCDPSIQNQIVEKLKKSLKEFYGEDAKKSRDYGRIISARHFQRVMGLIE 299

Query: 544  GQKIAFGGETDEATRYIAPTILTDVDPEAKVMREEIFGPILPIVPVKNADEAVKFINERE 723
            GQK+A+GG  D ATRYIAPTILTDVDP++ VM+EEIFGP+LPIV V++ +EA++FIN+RE
Sbjct: 300  GQKVAYGGTGDAATRYIAPTILTDVDPQSPVMQEEIFGPVLPIVCVRSLEEAIQFINQRE 359

Query: 724  KPLAFYVFSRNNKLIKRMIEATSSGGVTGNDVIMHFMLSSLPFGGVGSSGMGAYHGKHSF 903
            KPLA Y+FS N+K+IK+MI  TSSGGV  NDVI+H  L SLPFGGVG+SGMG+YHGK SF
Sbjct: 360  KPLALYMFSSNDKVIKKMIAETSSGGVAANDVIVHITLHSLPFGGVGNSGMGSYHGKKSF 419

Query: 904  ETFSHLRPCLLKSLKGEGANKLRYPPN 984
            ETFSH R CL++ L  +   K+RYPP+
Sbjct: 420  ETFSHRRSCLVRPLMNDEGLKVRYPPS 446


>ref|NP_001154945.1| aldehyde dehydrogenase family 3 member B1 isoform a [Homo sapiens].
          Length = 468

 Score =  392 bits (1007), Expect = e-109
 Identities = 186/332 (56%), Positives = 245/332 (73%)
 Frame = +1

Query: 4    LSIQPLXXXXXXXXXXXXKPSEISENTAKILAKLLPQYLDQDLYAVINGGVEETTKLLEQ 183
            L++ PL            KPSEIS+N  KILA++LPQY+DQ  +AV+ GG +ET +LLE 
Sbjct: 120  LTLVPLVGALAAGNCVVLKPSEISKNVEKILAEVLPQYVDQSCFAVVLGGPQETGQLLEH 179

Query: 184  RFDHILYTGSTAVGKIVMEAAAKHLTPVTLELGGKSPCYIDPDCDLDVACRRIAWGKYMN 363
            RFD+I +TGS  VGKIVM AAAKHLTPVTLELGGK+PCY+D +CD      R+AW +Y N
Sbjct: 180  RFDYIFFTGSPRVGKIVMTAAAKHLTPVTLELGGKNPCYVDDNCDPQTVANRVAWFRYFN 239

Query: 364  CGQTCIAPDYVLCEPSLQDQVVQKMKEAVKEFYGDNIKDSPDYERIVNLRHFKRIQSLLE 543
             GQTC+APDYVLC P +Q++++  ++  +  FYGD+ + SP+  RI+N + F+R+++LL 
Sbjct: 240  AGQTCVAPDYVLCSPEMQERLLPALQSTITRFYGDDPQSSPNLGRIINQKQFQRLRALLG 299

Query: 544  GQKIAFGGETDEATRYIAPTILTDVDPEAKVMREEIFGPILPIVPVKNADEAVKFINERE 723
              ++A GG++DE+ RYIAPT+L DV     VM+EEIFGPILPIV V++ DEA++FIN RE
Sbjct: 300  CGRVAIGGQSDESDRYIAPTVLVDVQEMEPVMQEEIFGPILPIVNVQSLDEAIEFINRRE 359

Query: 724  KPLAFYVFSRNNKLIKRMIEATSSGGVTGNDVIMHFMLSSLPFGGVGSSGMGAYHGKHSF 903
            KPLA Y FS +++++KR++  TSSGG  GND  MH  L+SLPFGGVG+SGMG YHGK SF
Sbjct: 360  KPLALYAFSNSSQVVKRVLTQTSSGGFCGNDGFMHMTLASLPFGGVGASGMGRYHGKFSF 419

Query: 904  ETFSHLRPCLLKSLKGEGANKLRYPPNSQSKV 999
            +TFSH R CLL+S   E  N LRYPP S  ++
Sbjct: 420  DTFSHHRACLLRSPGMEKLNALRYPPQSPRRL 451


>ref|NP_001025181.1| aldehyde dehydrogenase family 3 member B1 isoform b [Homo sapiens].
          Length = 431

 Score =  392 bits (1007), Expect = e-109
 Identities = 186/332 (56%), Positives = 245/332 (73%)
 Frame = +1

Query: 4    LSIQPLXXXXXXXXXXXXKPSEISENTAKILAKLLPQYLDQDLYAVINGGVEETTKLLEQ 183
            L++ PL            KPSEIS+N  KILA++LPQY+DQ  +AV+ GG +ET +LLE 
Sbjct: 83   LTLVPLVGALAAGNCVVLKPSEISKNVEKILAEVLPQYVDQSCFAVVLGGPQETGQLLEH 142

Query: 184  RFDHILYTGSTAVGKIVMEAAAKHLTPVTLELGGKSPCYIDPDCDLDVACRRIAWGKYMN 363
            RFD+I +TGS  VGKIVM AAAKHLTPVTLELGGK+PCY+D +CD      R+AW +Y N
Sbjct: 143  RFDYIFFTGSPRVGKIVMTAAAKHLTPVTLELGGKNPCYVDDNCDPQTVANRVAWFRYFN 202

Query: 364  CGQTCIAPDYVLCEPSLQDQVVQKMKEAVKEFYGDNIKDSPDYERIVNLRHFKRIQSLLE 543
             GQTC+APDYVLC P +Q++++  ++  +  FYGD+ + SP+  RI+N + F+R+++LL 
Sbjct: 203  AGQTCVAPDYVLCSPEMQERLLPALQSTITRFYGDDPQSSPNLGRIINQKQFQRLRALLG 262

Query: 544  GQKIAFGGETDEATRYIAPTILTDVDPEAKVMREEIFGPILPIVPVKNADEAVKFINERE 723
              ++A GG++DE+ RYIAPT+L DV     VM+EEIFGPILPIV V++ DEA++FIN RE
Sbjct: 263  CGRVAIGGQSDESDRYIAPTVLVDVQEMEPVMQEEIFGPILPIVNVQSLDEAIEFINRRE 322

Query: 724  KPLAFYVFSRNNKLIKRMIEATSSGGVTGNDVIMHFMLSSLPFGGVGSSGMGAYHGKHSF 903
            KPLA Y FS +++++KR++  TSSGG  GND  MH  L+SLPFGGVG+SGMG YHGK SF
Sbjct: 323  KPLALYAFSNSSQVVKRVLTQTSSGGFCGNDGFMHMTLASLPFGGVGASGMGRYHGKFSF 382

Query: 904  ETFSHLRPCLLKSLKGEGANKLRYPPNSQSKV 999
            +TFSH R CLL+S   E  N LRYPP S  ++
Sbjct: 383  DTFSHHRACLLRSPGMEKLNALRYPPQSPRRL 414


>ref|NP_000685.1| aldehyde dehydrogenase family 3 member B1 isoform a [Homo sapiens].
          Length = 468

 Score =  392 bits (1007), Expect = e-109
 Identities = 186/332 (56%), Positives = 245/332 (73%)
 Frame = +1

Query: 4    LSIQPLXXXXXXXXXXXXKPSEISENTAKILAKLLPQYLDQDLYAVINGGVEETTKLLEQ 183
            L++ PL            KPSEIS+N  KILA++LPQY+DQ  +AV+ GG +ET +LLE 
Sbjct: 120  LTLVPLVGALAAGNCVVLKPSEISKNVEKILAEVLPQYVDQSCFAVVLGGPQETGQLLEH 179

Query: 184  RFDHILYTGSTAVGKIVMEAAAKHLTPVTLELGGKSPCYIDPDCDLDVACRRIAWGKYMN 363
            RFD+I +TGS  VGKIVM AAAKHLTPVTLELGGK+PCY+D +CD      R+AW +Y N
Sbjct: 180  RFDYIFFTGSPRVGKIVMTAAAKHLTPVTLELGGKNPCYVDDNCDPQTVANRVAWFRYFN 239

Query: 364  CGQTCIAPDYVLCEPSLQDQVVQKMKEAVKEFYGDNIKDSPDYERIVNLRHFKRIQSLLE 543
             GQTC+APDYVLC P +Q++++  ++  +  FYGD+ + SP+  RI+N + F+R+++LL 
Sbjct: 240  AGQTCVAPDYVLCSPEMQERLLPALQSTITRFYGDDPQSSPNLGRIINQKQFQRLRALLG 299

Query: 544  GQKIAFGGETDEATRYIAPTILTDVDPEAKVMREEIFGPILPIVPVKNADEAVKFINERE 723
              ++A GG++DE+ RYIAPT+L DV     VM+EEIFGPILPIV V++ DEA++FIN RE
Sbjct: 300  CGRVAIGGQSDESDRYIAPTVLVDVQEMEPVMQEEIFGPILPIVNVQSLDEAIEFINRRE 359

Query: 724  KPLAFYVFSRNNKLIKRMIEATSSGGVTGNDVIMHFMLSSLPFGGVGSSGMGAYHGKHSF 903
            KPLA Y FS +++++KR++  TSSGG  GND  MH  L+SLPFGGVG+SGMG YHGK SF
Sbjct: 360  KPLALYAFSNSSQVVKRVLTQTSSGGFCGNDGFMHMTLASLPFGGVGASGMGRYHGKFSF 419

Query: 904  ETFSHLRPCLLKSLKGEGANKLRYPPNSQSKV 999
            +TFSH R CLL+S   E  N LRYPP S  ++
Sbjct: 420  DTFSHHRACLLRSPGMEKLNALRYPPQSPRRL 451


>ref|NP_001026786.1| aldehyde dehydrogenase family 3 member B2 [Homo sapiens].
          Length = 385

 Score =  362 bits (928), Expect = e-100
 Identities = 170/316 (53%), Positives = 230/316 (72%)
 Frame = +1

Query: 58   KPSEISENTAKILAKLLPQYLDQDLYAVINGGVEETTKLLEQRFDHILYTGSTAVGKIVM 237
            KPSEIS+ T K+LA++LPQYLDQ  +AV+ GG +ET +LLE + D+I +TGS  VGKIVM
Sbjct: 57   KPSEISQGTEKVLAEVLPQYLDQSCFAVVLGGPQETGQLLEHKLDYIFFTGSPRVGKIVM 116

Query: 238  EAAAKHLTPVTLELGGKSPCYIDPDCDLDVACRRIAWGKYMNCGQTCIAPDYVLCEPSLQ 417
             AA KHLTPVTLELGGK+PCY+D +CD      R+AW  Y N GQTC+APDYVLC P +Q
Sbjct: 117  TAATKHLTPVTLELGGKNPCYVDDNCDPQTVANRVAWFCYFNAGQTCVAPDYVLCSPEMQ 176

Query: 418  DQVVQKMKEAVKEFYGDNIKDSPDYERIVNLRHFKRIQSLLEGQKIAFGGETDEATRYIA 597
            ++++  ++  +  FYGD+ + SP+  RI+N + F+R+++LL   ++A GG+++E+ RYIA
Sbjct: 177  ERLLPALQSTITRFYGDDPQSSPNLGRIINQKQFQRLRALLGCGRVAIGGQSNESDRYIA 236

Query: 598  PTILTDVDPEAKVMREEIFGPILPIVPVKNADEAVKFINEREKPLAFYVFSRNNKLIKRM 777
            PT+L DV     VM+EEIFGPILPIV V++ DEA+KFIN +EKPLA Y FS +++++ +M
Sbjct: 237  PTVLVDVQETEPVMQEEIFGPILPIVNVQSVDEAIKFINRQEKPLALYAFSNSSQVVNQM 296

Query: 778  IEATSSGGVTGNDVIMHFMLSSLPFGGVGSSGMGAYHGKHSFETFSHLRPCLLKSLKGEG 957
            +E TSSG   GN+   +  L S+PFGGVG SGMG YHGK +F+TFSH R CLL     E 
Sbjct: 297  LERTSSGSFGGNEGFTYISLLSVPFGGVGHSGMGRYHGKFTFDTFSHHRTCLLAPSGLEK 356

Query: 958  ANKLRYPPNSQSKVDW 1005
              ++ YPP +    DW
Sbjct: 357  LKEIHYPPYT----DW 368


>ref|NP_000686.2| aldehyde dehydrogenase family 3 member B2 [Homo sapiens].
          Length = 385

 Score =  362 bits (928), Expect = e-100
 Identities = 170/316 (53%), Positives = 230/316 (72%)
 Frame = +1

Query: 58   KPSEISENTAKILAKLLPQYLDQDLYAVINGGVEETTKLLEQRFDHILYTGSTAVGKIVM 237
            KPSEIS+ T K+LA++LPQYLDQ  +AV+ GG +ET +LLE + D+I +TGS  VGKIVM
Sbjct: 57   KPSEISQGTEKVLAEVLPQYLDQSCFAVVLGGPQETGQLLEHKLDYIFFTGSPRVGKIVM 116

Query: 238  EAAAKHLTPVTLELGGKSPCYIDPDCDLDVACRRIAWGKYMNCGQTCIAPDYVLCEPSLQ 417
             AA KHLTPVTLELGGK+PCY+D +CD      R+AW  Y N GQTC+APDYVLC P +Q
Sbjct: 117  TAATKHLTPVTLELGGKNPCYVDDNCDPQTVANRVAWFCYFNAGQTCVAPDYVLCSPEMQ 176

Query: 418  DQVVQKMKEAVKEFYGDNIKDSPDYERIVNLRHFKRIQSLLEGQKIAFGGETDEATRYIA 597
            ++++  ++  +  FYGD+ + SP+  RI+N + F+R+++LL   ++A GG+++E+ RYIA
Sbjct: 177  ERLLPALQSTITRFYGDDPQSSPNLGRIINQKQFQRLRALLGCGRVAIGGQSNESDRYIA 236

Query: 598  PTILTDVDPEAKVMREEIFGPILPIVPVKNADEAVKFINEREKPLAFYVFSRNNKLIKRM 777
            PT+L DV     VM+EEIFGPILPIV V++ DEA+KFIN +EKPLA Y FS +++++ +M
Sbjct: 237  PTVLVDVQETEPVMQEEIFGPILPIVNVQSVDEAIKFINRQEKPLALYAFSNSSQVVNQM 296

Query: 778  IEATSSGGVTGNDVIMHFMLSSLPFGGVGSSGMGAYHGKHSFETFSHLRPCLLKSLKGEG 957
            +E TSSG   GN+   +  L S+PFGGVG SGMG YHGK +F+TFSH R CLL     E 
Sbjct: 297  LERTSSGSFGGNEGFTYISLLSVPFGGVGHSGMGRYHGKFTFDTFSHHRTCLLAPSGLEK 356

Query: 958  ANKLRYPPNSQSKVDW 1005
              ++ YPP +    DW
Sbjct: 357  LKEIHYPPYT----DW 368


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 77,582,943
Number of extensions: 2264310
Number of successful extensions: 11916
Number of sequences better than 1.0e-05: 33
Number of HSP's gapped: 11723
Number of HSP's successfully gapped: 33
Length of query: 661
Length of database: 18,297,164
Length adjustment: 109
Effective length of query: 552
Effective length of database: 14,704,088
Effective search space: 8116656576
Effective search space used: 8116656576
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007407
         (1984 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_031463.2| fatty aldehyde dehydrogenase [Mus musculus].         590   e-168
Alignment   gi|NP_001106196.1| aldehyde dehydrogenase, dimeric NADP-preferr...   469   e-132
Alignment   gi|NP_031462.2| aldehyde dehydrogenase, dimeric NADP-preferring...   469   e-132
Alignment   gi|NP_001170909.1| aldehyde dehydrogenase 3 family, member B2 [...   397   e-110
Alignment   gi|NP_082821.2| aldehyde dehydrogenase 3 family, member B2-like...   395   e-110
Alignment   gi|NP_080592.2| aldehyde dehydrogenase family 3 member B1 [Mus ...   389   e-108
Alignment   gi|NP_444310.3| aldehyde dehydrogenase family 1 member A3 [Mus ...   134   2e-31
Alignment   gi|NP_038495.2| retinal dehydrogenase 1 [Mus musculus].              129   6e-30
Alignment   gi|NP_036051.1| aldehyde dehydrogenase, cytosolic 1 [Mus muscul...   122   8e-28
Alignment   gi|NP_766120.1| succinate-semialdehyde dehydrogenase, mitochond...   119   1e-26

>ref|NP_031463.2| fatty aldehyde dehydrogenase [Mus musculus].
          Length = 484

 Score =  590 bits (1522), Expect = e-168
 Identities = 281/347 (80%), Positives = 315/347 (90%)
 Frame = +1

Query: 4    LSIQPLXXXXXXXXXXXXKPSEISENTAKILAKLLPQYLDQDLYAVINGGVEETTKLLEQ 183
            L++QPL            KPSE+SENTAKILA+LLPQYLDQDLYA++NGG+ ETT+LL+Q
Sbjct: 117  LTMQPLVGAIAAGNAAIVKPSELSENTAKILAELLPQYLDQDLYAIVNGGIPETTELLKQ 176

Query: 184  RFDHILYTGSTAVGKIVMEAAAKHLTPVTLELGGKSPCYIDPDCDLDVACRRIAWGKYMN 363
            RFDHILYTG+TAVGKIVMEAAAKHLTPVTLELGGKSPCYID DCDLDVACRRIAWGKYMN
Sbjct: 177  RFDHILYTGNTAVGKIVMEAAAKHLTPVTLELGGKSPCYIDRDCDLDVACRRIAWGKYMN 236

Query: 364  CGQTCIAPDYVLCEPSLQDQVVQKMKEAVKEFYGDNIKDSPDYERIVNLRHFKRIQSLLE 543
            CGQTCIAPDY+LCE SLQ+Q+VQK+KE VK+FYG+NIK SPDYERI+NLRHFKR+QSLL+
Sbjct: 237  CGQTCIAPDYILCEASLQNQIVQKIKETVKDFYGENIKASPDYERIINLRHFKRLQSLLK 296

Query: 544  GQKIAFGGETDEATRYIAPTILTDVDPEAKVMREEIFGPILPIVPVKNADEAVKFINERE 723
            GQKIAFGGE DEATRY+APTILTDVDP +KVM+EEIFGPILPIV VKN DEA+ FIN+RE
Sbjct: 297  GQKIAFGGEMDEATRYLAPTILTDVDPNSKVMQEEIFGPILPIVSVKNVDEAINFINDRE 356

Query: 724  KPLAFYVFSRNNKLIKRMIEATSSGGVTGNDVIMHFMLSSLPFGGVGSSGMGAYHGKHSF 903
            KPLA YVFSRNNKLIKR+I+ TSSGGVTGNDVIMHF ++SLPFGGVG+SGMGAYHGK+SF
Sbjct: 357  KPLALYVFSRNNKLIKRVIDETSSGGVTGNDVIMHFTVNSLPFGGVGASGMGAYHGKYSF 416

Query: 904  ETFSHLRPCLLKSLKGEGANKLRYPPNSQSKVDWAKFFFLKRVSKGR 1044
            +TFSH RPCLLK LKGE  NKLRYPPNS+SKV WAKFF LK+ +KGR
Sbjct: 417  DTFSHQRPCLLKGLKGESVNKLRYPPNSESKVSWAKFFLLKQFNKGR 463


>ref|NP_001106196.1| aldehyde dehydrogenase, dimeric NADP-preferring [Mus musculus].
          Length = 453

 Score =  469 bits (1207), Expect = e-132
 Identities = 215/327 (65%), Positives = 277/327 (84%)
 Frame = +1

Query: 4    LSIQPLXXXXXXXXXXXXKPSEISENTAKILAKLLPQYLDQDLYAVINGGVEETTKLLEQ 183
            L+IQP+            KPSE+S++ A +L+ L+PQY+D+DLY VI GGV ETT+LL++
Sbjct: 120  LTIQPMVGAIAAGNAVVLKPSEVSDHMADLLSTLIPQYMDKDLYPVIKGGVPETTELLKE 179

Query: 184  RFDHILYTGSTAVGKIVMEAAAKHLTPVTLELGGKSPCYIDPDCDLDVACRRIAWGKYMN 363
            +FDHI+YTGSTAVGKIVM AAAKHLTPVTLELGGKSPCY+D DCDLDVACRRIAWGK+MN
Sbjct: 180  KFDHIMYTGSTAVGKIVMAAAAKHLTPVTLELGGKSPCYVDKDCDLDVACRRIAWGKFMN 239

Query: 364  CGQTCIAPDYVLCEPSLQDQVVQKMKEAVKEFYGDNIKDSPDYERIVNLRHFKRIQSLLE 543
             GQTC+APDY+LC+PS+Q+++V+K+K+++K+FYG++ K S DY RI+N RHF+R+ +L++
Sbjct: 240  SGQTCVAPDYILCDPSIQNEIVEKLKKSLKDFYGEDAKQSHDYGRIINDRHFQRVINLID 299

Query: 544  GQKIAFGGETDEATRYIAPTILTDVDPEAKVMREEIFGPILPIVPVKNADEAVKFINERE 723
             +K+A GG  D+ +RYIAPTIL DVDP++ VM+EEIFGP++PIV V++ DEA+KFIN+RE
Sbjct: 300  SKKVAHGGTWDQPSRYIAPTILVDVDPQSPVMQEEIFGPVMPIVCVRSLDEAIKFINQRE 359

Query: 724  KPLAFYVFSRNNKLIKRMIEATSSGGVTGNDVIMHFMLSSLPFGGVGSSGMGAYHGKHSF 903
            KPLA YVFS N+K+IK+MI  TSSGGVT NDVI+H  + +LPFGGVG+SGMGAYHGK SF
Sbjct: 360  KPLALYVFSNNDKVIKKMIAETSSGGVTANDVIVHITVPTLPFGGVGNSGMGAYHGKKSF 419

Query: 904  ETFSHLRPCLLKSLKGEGANKLRYPPN 984
            ETFSH R CL++SL+ E ANK RYPP+
Sbjct: 420  ETFSHRRSCLVRSLRNEEANKARYPPS 446


>ref|NP_031462.2| aldehyde dehydrogenase, dimeric NADP-preferring [Mus musculus].
          Length = 453

 Score =  469 bits (1207), Expect = e-132
 Identities = 215/327 (65%), Positives = 277/327 (84%)
 Frame = +1

Query: 4    LSIQPLXXXXXXXXXXXXKPSEISENTAKILAKLLPQYLDQDLYAVINGGVEETTKLLEQ 183
            L+IQP+            KPSE+S++ A +L+ L+PQY+D+DLY VI GGV ETT+LL++
Sbjct: 120  LTIQPMVGAIAAGNAVVLKPSEVSDHMADLLSTLIPQYMDKDLYPVIKGGVPETTELLKE 179

Query: 184  RFDHILYTGSTAVGKIVMEAAAKHLTPVTLELGGKSPCYIDPDCDLDVACRRIAWGKYMN 363
            +FDHI+YTGSTAVGKIVM AAAKHLTPVTLELGGKSPCY+D DCDLDVACRRIAWGK+MN
Sbjct: 180  KFDHIMYTGSTAVGKIVMAAAAKHLTPVTLELGGKSPCYVDKDCDLDVACRRIAWGKFMN 239

Query: 364  CGQTCIAPDYVLCEPSLQDQVVQKMKEAVKEFYGDNIKDSPDYERIVNLRHFKRIQSLLE 543
             GQTC+APDY+LC+PS+Q+++V+K+K+++K+FYG++ K S DY RI+N RHF+R+ +L++
Sbjct: 240  SGQTCVAPDYILCDPSIQNEIVEKLKKSLKDFYGEDAKQSHDYGRIINDRHFQRVINLID 299

Query: 544  GQKIAFGGETDEATRYIAPTILTDVDPEAKVMREEIFGPILPIVPVKNADEAVKFINERE 723
             +K+A GG  D+ +RYIAPTIL DVDP++ VM+EEIFGP++PIV V++ DEA+KFIN+RE
Sbjct: 300  SKKVAHGGTWDQPSRYIAPTILVDVDPQSPVMQEEIFGPVMPIVCVRSLDEAIKFINQRE 359

Query: 724  KPLAFYVFSRNNKLIKRMIEATSSGGVTGNDVIMHFMLSSLPFGGVGSSGMGAYHGKHSF 903
            KPLA YVFS N+K+IK+MI  TSSGGVT NDVI+H  + +LPFGGVG+SGMGAYHGK SF
Sbjct: 360  KPLALYVFSNNDKVIKKMIAETSSGGVTANDVIVHITVPTLPFGGVGNSGMGAYHGKKSF 419

Query: 904  ETFSHLRPCLLKSLKGEGANKLRYPPN 984
            ETFSH R CL++SL+ E ANK RYPP+
Sbjct: 420  ETFSHRRSCLVRSLRNEEANKARYPPS 446


>ref|NP_001170909.1| aldehyde dehydrogenase 3 family, member B2 [Mus musculus].
          Length = 479

 Score =  397 bits (1019), Expect = e-110
 Identities = 190/338 (56%), Positives = 244/338 (72%), Gaps = 3/338 (0%)
 Frame = +1

Query: 4    LSIQPLXXXXXXXXXXXXKPSEISENTAKILAKLLPQYLDQDLYAVINGGVEETTKLLEQ 183
            L I PL            KPSEIS+NT K+LA+LLPQYLDQ  +AV+ GG EET +LLE 
Sbjct: 133  LMIIPLVGAIAAGNCVVLKPSEISKNTEKVLAELLPQYLDQSCFAVMLGGPEETRQLLEH 192

Query: 184  RFDHILYTGSTAVGKIVMEAAAKHLTPVTLELGGKSPCYIDPDCDLDVACRRIAWGKYMN 363
            +FD+I +TGS  VGKIVM AAAKHLTP+TLELGGK+PCY+D +CD      R+AW +Y N
Sbjct: 193  KFDYIFFTGSPRVGKIVMTAAAKHLTPITLELGGKNPCYVDDNCDPQTVANRVAWFRYFN 252

Query: 364  CGQTCIAPDYVLCEPSLQDQVVQKMKEAVKEFYGDNIKDSPDYERIVNLRHFKRIQSLLE 543
             GQTC+APDY+LC   +Q+++V  ++ ++  FYGDN + SP+  RI+N +HFKR+Q LL 
Sbjct: 253  AGQTCVAPDYILCSQEMQERLVPALQNSITRFYGDNPQTSPNLGRIINQKHFKRLQGLLG 312

Query: 544  GQKIAFGGETDEATRYIAPTILTDVDPEAKVMREEIFGPILPIVPVKNADEAVKFINERE 723
              ++A GG++DE  RYIAPT+L DV     VM+EEIFGPILP+V V++ DEA++FIN RE
Sbjct: 313  CGRVAIGGQSDEGERYIAPTVLVDVQETEPVMQEEIFGPILPLVTVRSLDEAIEFINRRE 372

Query: 724  KPLAFYVFSRNNKLIKRMIEATSSGGVTGNDVIMHFMLSSLPFGGVGSSGMGAYHGKHSF 903
            KPLA Y FS NN+++ +M+E TSSGG  GND  ++  L +LP GGVG+SGMG YHGK SF
Sbjct: 373  KPLALYAFSNNNQVVNQMLERTSSGGFGGNDGFLYLTLPALPLGGVGNSGMGRYHGKFSF 432

Query: 904  ETFSHLRPCLLKSLKGEGANKLRYPPN---SQSKVDWA 1008
            +TFSH R CLL+S   E  N LRYPP    +Q  + WA
Sbjct: 433  DTFSHHRACLLRSPGMEKLNDLRYPPYGPWNQQLISWA 470


>ref|NP_082821.2| aldehyde dehydrogenase 3 family, member B2-like [Mus musculus].
          Length = 479

 Score =  395 bits (1015), Expect = e-110
 Identities = 193/338 (57%), Positives = 244/338 (72%), Gaps = 3/338 (0%)
 Frame = +1

Query: 4    LSIQPLXXXXXXXXXXXXKPSEISENTAKILAKLLPQYLDQDLYAVINGGVEETTKLLEQ 183
            L I PL            KPSEIS+NT K+LA+LLPQYLDQ  +AV+ GG EET +LLE 
Sbjct: 133  LMIIPLVGAIAAGNCVVLKPSEISKNTEKVLAELLPQYLDQSCFAVMLGGPEETGQLLEH 192

Query: 184  RFDHILYTGSTAVGKIVMEAAAKHLTPVTLELGGKSPCYIDPDCDLDVACRRIAWGKYMN 363
            +FD+I +TGS  VGKIVM AAAKHLTP+TLELGGK+PCY+D +CD      R+AW +Y N
Sbjct: 193  KFDYIFFTGSPRVGKIVMTAAAKHLTPITLELGGKNPCYVDDNCDPQTVANRVAWFRYFN 252

Query: 364  CGQTCIAPDYVLCEPSLQDQVVQKMKEAVKEFYGDNIKDSPDYERIVNLRHFKRIQSLLE 543
             GQTC+APDY+LC   +Q+Q+V  ++ A+  FYGDN + SP+  RI+N +HFKR+Q LL 
Sbjct: 253  AGQTCVAPDYILCSQEMQEQLVPALQNAITRFYGDNPQTSPNLGRIINQKHFKRLQGLLG 312

Query: 544  GQKIAFGGETDEATRYIAPTILTDVDPEAKVMREEIFGPILPIVPVKNADEAVKFINERE 723
              ++A GG++DE  RYIAPT+L DV     VM+EEIFGPILP+V V++ DEA++F+N+RE
Sbjct: 313  CGRVAIGGQSDEGERYIAPTVLVDVQETEPVMQEEIFGPILPLVTVRSLDEAIEFMNQRE 372

Query: 724  KPLAFYVFSRNNKLIKRMIEATSSGGVTGNDVIMHFMLSSLPFGGVGSSGMGAYHGKHSF 903
            KPLA Y +S N ++IK+++  TSSGG  GND  M+  LSSLPFGGVGSSGMG YHGK SF
Sbjct: 373  KPLALYAYSNNAEVIKQVLARTSSGGFCGNDGFMYMTLSSLPFGGVGSSGMGRYHGKFSF 432

Query: 904  ETFSHLRPCLLKSLKGEGANKLRYPPNS---QSKVDWA 1008
            +TFS+ R CLL     E  N LRYPP S   Q  + WA
Sbjct: 433  DTFSNQRACLLSCPGMEKLNGLRYPPYSPRRQQLLRWA 470


>ref|NP_080592.2| aldehyde dehydrogenase family 3 member B1 [Mus musculus].
          Length = 468

 Score =  389 bits (1000), Expect = e-108
 Identities = 184/328 (56%), Positives = 242/328 (73%)
 Frame = +1

Query: 4    LSIQPLXXXXXXXXXXXXKPSEISENTAKILAKLLPQYLDQDLYAVINGGVEETTKLLEQ 183
            L++ PL            KPSEIS+ T KILA++LP+YLDQ  + V+ GG +ET +LLE 
Sbjct: 120  LTLVPLVGAIAAGNCVVLKPSEISKATEKILAEVLPRYLDQSCFTVVLGGRQETGQLLEH 179

Query: 184  RFDHILYTGSTAVGKIVMEAAAKHLTPVTLELGGKSPCYIDPDCDLDVACRRIAWGKYMN 363
            +FD+I +TG+  VGKIVM AAAKHLTP+TLELGGK+PCY+D +CD  +   R+AW +Y N
Sbjct: 180  KFDYIFFTGNAYVGKIVMAAAAKHLTPITLELGGKNPCYVDDNCDPQIVANRVAWFRYFN 239

Query: 364  CGQTCIAPDYVLCEPSLQDQVVQKMKEAVKEFYGDNIKDSPDYERIVNLRHFKRIQSLLE 543
             GQTC+APDY+LC   +Q+++V  ++ A+  FYGDN + SP+  RI+N +HFKR+Q LL 
Sbjct: 240  AGQTCVAPDYILCSQEMQERLVPALQNAITRFYGDNPQTSPNLGRIINQKHFKRLQGLLG 299

Query: 544  GQKIAFGGETDEATRYIAPTILTDVDPEAKVMREEIFGPILPIVPVKNADEAVKFINERE 723
              ++A GG++DE  RYIAPT+L DV     VM+EEIFGPILP+V V++ DEA++F+N RE
Sbjct: 300  CGRVAIGGQSDEGERYIAPTVLVDVQETEPVMQEEIFGPILPLVTVRSLDEAIEFMNRRE 359

Query: 724  KPLAFYVFSRNNKLIKRMIEATSSGGVTGNDVIMHFMLSSLPFGGVGSSGMGAYHGKHSF 903
            KPLA Y FS+ +++IK+++  TSSGG  GND  MH  LSSLPFGGVG+SGMG YHGK SF
Sbjct: 360  KPLALYAFSKRSQVIKQVLARTSSGGFCGNDGFMHMTLSSLPFGGVGTSGMGRYHGKFSF 419

Query: 904  ETFSHLRPCLLKSLKGEGANKLRYPPNS 987
            +TFS+ R CLL+S   E  N LRYPP S
Sbjct: 420  DTFSNQRACLLRSPGMEKINDLRYPPYS 447


>ref|NP_444310.3| aldehyde dehydrogenase family 1 member A3 [Mus musculus].
          Length = 512

 Score =  134 bits (338), Expect = 2e-31
 Identities = 97/305 (31%), Positives = 150/305 (49%), Gaps = 11/305 (3%)
 Frame = +1

Query: 58   KPSEISENTAKILAKLLPQYLDQDLYAVINGGVEETTKLL---EQRFDHILYTGSTAVGK 228
            KP+E +  TA  LA L+ +         I  G   T         + + I +TGST VGK
Sbjct: 204  KPAEQTPLTALYLASLIKEVGFPPGVVNIVPGFGPTVGAAISSHPQINKIAFTGSTEVGK 263

Query: 229  IVMEAAAK-HLTPVTLELGGKSPCYIDPDCDLDVACRRIAWGKYMNCGQTCIAPDYVLCE 405
            +V EAA++ +L  VTLELGGK+PC +  D DLD+A      G + N GQ C A   V  E
Sbjct: 264  LVREAASRSNLKRVTLELGGKNPCIVCADADLDLAVECAHQGVFFNQGQCCTAASRVFVE 323

Query: 406  PSLQDQVVQKMKE-AVKEFYGDNIKDSPDYERIVNLRHFKRIQSLLE-----GQKIAFGG 567
              +  + V++  E A K   GD      +    ++ + F +I  L+E     G K+  GG
Sbjct: 324  EQVYGEFVRRSVEFAKKRPVGDPFDAKTEQGPQIDQKQFDKILELIESGKKEGAKLECGG 383

Query: 568  ET-DEATRYIAPTILTDVDPEAKVMREEIFGPILPIVPVKNADEAVKFINEREKPLAFYV 744
               ++   +I PT+ +DV    ++ +EEIFGP+ PI+  KN +E +K  N  +  L   V
Sbjct: 384  SAMEDRGLFIKPTVFSDVTDNMRIAKEEIFGPVQPILKFKNLEEVIKRANSTDYGLTAAV 443

Query: 745  FSRNNKLIKRMIEATSSGGVTGNDVIMHFMLSSLPFGGVGSSGMGAYHGKHSFETFSHLR 924
            F++N     ++  A  SG V  N    +   +  PFGG   SG G   G+++   ++ ++
Sbjct: 444  FTKNLDKALKLAAALESGTVWIN--CYNAFYAQAPFGGFKMSGNGRELGEYALAEYTEVK 501

Query: 925  PCLLK 939
               +K
Sbjct: 502  TVTIK 506


>ref|NP_038495.2| retinal dehydrogenase 1 [Mus musculus].
          Length = 501

 Score =  129 bits (325), Expect = 6e-30
 Identities = 84/258 (32%), Positives = 134/258 (51%), Gaps = 8/258 (3%)
 Frame = +1

Query: 190  DHILYTGSTAVGKIVMEAAAK-HLTPVTLELGGKSPCYIDPDCDLDVACRRIAWGKYMNC 366
            D + +TGST VGK++ EAA K +L  VTLELGGKSPC +  D DLD+A      G + + 
Sbjct: 240  DKVAFTGSTQVGKLIKEAAGKSNLKRVTLELGGKSPCIVFADADLDIAVEFAHHGVFYHQ 299

Query: 367  GQTCIAPDYVLCEPSLQDQVVQKMKEAVKEFYGDN-----IKDSPDYERIVNLRHFKRIQ 531
            GQ C+A   +  E S+ D+ V++  E  K++   N     I   P  ++  + +    I+
Sbjct: 300  GQCCVAASRIFVEESVYDEFVKRSVERAKKYVLGNPLTPGINQGPQIDKEQHDKILDLIE 359

Query: 532  S-LLEGQKI-AFGGETDEATRYIAPTILTDVDPEAKVMREEIFGPILPIVPVKNADEAVK 705
            S   EG K+   GG       ++ PT+ ++V  E ++ +EEIFGP+  I+  K+ D+ +K
Sbjct: 360  SGKKEGAKLECGGGRWGNKGFFVQPTVFSNVTDEMRIAKEEIFGPVQQIMKFKSVDDVIK 419

Query: 706  FINEREKPLAFYVFSRNNKLIKRMIEATSSGGVTGNDVIMHFMLSSLPFGGVGSSGMGAY 885
              N     LA  +F+++      +  A  +G V  N  +M  + +  PFGG   SG G  
Sbjct: 420  RANNTTYGLAAGLFTKDLDKAITVSSALQAGVVWVNCYMM--LSAQCPFGGFKMSGNGRE 477

Query: 886  HGKHSFETFSHLRPCLLK 939
             G+H    ++ L+   +K
Sbjct: 478  LGEHGLYEYTELKTVAMK 495


>ref|NP_036051.1| aldehyde dehydrogenase, cytosolic 1 [Mus musculus].
          Length = 501

 Score =  122 bits (307), Expect = 8e-28
 Identities = 83/253 (32%), Positives = 129/253 (50%), Gaps = 8/253 (3%)
 Frame = +1

Query: 190 DHILYTGSTAVGKIVMEAAAK-HLTPVTLELGGKSPCYIDPDCDLDVACRRIAWGKYMNC 366
           D + +TGST VGK++ EAA K +L  VTLELGGKSPC +  D DLD A      G + + 
Sbjct: 240 DKVSFTGSTEVGKLIKEAAGKSNLKRVTLELGGKSPCIVFADADLDSAVEFAHQGVFFHQ 299

Query: 367 GQTCIAPDYVLCEPSLQDQVVQKMKEAVKEFYGDN-----IKDSPDYERIVNLRHFKRIQ 531
           GQ C+A   +  E S+ D+ V++  E  K++   N     I   P  ++  + +    I+
Sbjct: 300 GQICVAASRLFVEESIYDEFVRRSVERAKKYILGNPLNSGINQGPQIDKEQHNKILGLIE 359

Query: 532 S-LLEGQKI-AFGGETDEATRYIAPTILTDVDPEAKVMREEIFGPILPIVPVKNADEAVK 705
           S   EG K+   GG       ++ PT+ ++V  E ++ +EEIFGP+  I+  K+ D+ +K
Sbjct: 360 SGKKEGAKLECGGGRWGNKGFFVQPTVFSNVTDEMRIAKEEIFGPVQQIMKFKSMDDVIK 419

Query: 706 FINEREKPLAFYVFSRNNKLIKRMIEATSSGGVTGNDVIMHFMLSSLPFGGVGSSGMGAY 885
             N     LA  VF+++      +  A  +G V  N  +   +    PFGG   SG G  
Sbjct: 420 RANNTTYGLAAGVFTKDLDKAITVSSALQAGMVWVNCYLA--VPVQCPFGGFKMSGNGRE 477

Query: 886 HGKHSFETFSHLR 924
            G+H    ++ L+
Sbjct: 478 LGEHGLYEYTELK 490


>ref|NP_766120.1| succinate-semialdehyde dehydrogenase, mitochondrial precursor [Mus
            musculus].
          Length = 523

 Score =  119 bits (297), Expect = 1e-26
 Identities = 84/303 (27%), Positives = 152/303 (50%), Gaps = 14/303 (4%)
 Frame = +1

Query: 58   KPSEISENTAKILAKLLPQY-LDQDLYAVI---NGGVEETTKLL--EQRFDHILYTGSTA 219
            KP+E +  +A  LA+L  Q  +   +Y VI       +E  ++L  +     I +TGSTA
Sbjct: 216  KPAEDTPYSALALAQLANQAGIPAGVYNVIPCSRNKAKEVGEVLCTDPLVSKISFTGSTA 275

Query: 220  VGKIVMEAAAKHLTPVTLELGGKSPCYIDPDCDLDVACRRIAWGKYMNCGQTCIAPDYVL 399
             GKI++  AA  +  V++ELGG +P  +    ++D A       K+ N GQTC+  +  L
Sbjct: 276  TGKILLHHAANSVKRVSMELGGLAPFIVFDSANVDQAVAGAMASKFRNAGQTCVCSNRFL 335

Query: 400  CEPSLQDQVVQKMKEAVKEF--YGDNIKDSPDYERIVNLRHFKRIQ-----SLLEGQKIA 558
             +  + D  V K  EA+K+    G+  ++      ++N +  ++++     ++ +G  + 
Sbjct: 336  VQRGIHDSFVTKFAEAMKKSLRVGNGFEEGTTQGPLINEKAVEKVEKQVNDAVAKGATVV 395

Query: 559  FGGETDEA-TRYIAPTILTDVDPEAKVMREEIFGPILPIVPVKNADEAVKFINEREKPLA 735
             GG+  ++   +  PT+L++V  +   + EE FGP+ P++     +EAV   N  E  LA
Sbjct: 396  TGGKRHQSGGNFFEPTLLSNVTRDMLCITEETFGPLAPVIKFDKEEEAVAIANAAEVGLA 455

Query: 736  FYVFSRNNKLIKRMIEATSSGGVTGNDVIMHFMLSSLPFGGVGSSGMGAYHGKHSFETFS 915
             Y +S++   I R+ E    G V  N+ ++  +    PFGGV  SG+G    K+  + + 
Sbjct: 456  GYFYSQDPAQIWRVAEQLEVGMVGVNEGLISSV--ECPFGGVKQSGLGREGSKYGIDEYL 513

Query: 916  HLR 924
             ++
Sbjct: 514  EVK 516


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 65,316,956
Number of extensions: 1862570
Number of successful extensions: 9582
Number of sequences better than 1.0e-05: 23
Number of HSP's gapped: 9468
Number of HSP's successfully gapped: 23
Length of query: 661
Length of database: 15,617,559
Length adjustment: 108
Effective length of query: 553
Effective length of database: 12,373,671
Effective search space: 6842640063
Effective search space used: 6842640063
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007407
         (1984 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_003132080.1| PREDICTED: fatty aldehyde dehydrogenase-like...   674   0.0  
Alignment   gi|XP_003132084.2| PREDICTED: aldehyde dehydrogenase, dimeric N...   465   e-131
Alignment   gi|XP_003353786.1| PREDICTED: LOW QUALITY PROTEIN: aldehyde deh...   375   e-104
Alignment   gi|XP_001925921.3| PREDICTED: aldehyde dehydrogenase family 1 m...   133   3e-31
Alignment   gi|XP_001924895.1| PREDICTED: 4-trimethylaminobutyraldehyde deh...   119   8e-27
Alignment   gi|XP_003121238.2| PREDICTED: aldehyde dehydrogenase family 8 m...   114   3e-25
Alignment   gi|XP_003353634.1| PREDICTED: aldehyde dehydrogenase X, mitocho...   112   6e-25
Alignment   gi|XP_003353633.1| PREDICTED: aldehyde dehydrogenase X, mitocho...   112   6e-25
Alignment   gi|XP_001926622.3| PREDICTED: aldehyde dehydrogenase family 1 m...   110   4e-24
Alignment   gi|XP_003359162.1| PREDICTED: aldehyde dehydrogenase, mitochond...   104   2e-22

>ref|XP_003132080.1| PREDICTED: fatty aldehyde dehydrogenase-like [Sus scrofa].
          Length = 485

 Score =  674 bits (1738), Expect = 0.0
 Identities = 335/347 (96%), Positives = 335/347 (96%)
 Frame = +1

Query: 4    LSIQPLXXXXXXXXXXXXKPSEISENTAKILAKLLPQYLDQDLYAVINGGVEETTKLLEQ 183
            LSIQPL            KPSEISENTAKILAKLLPQYLDQDLYAVINGGVEETTKLLEQ
Sbjct: 117  LSIQPLIGAIAAGNAVIIKPSEISENTAKILAKLLPQYLDQDLYAVINGGVEETTKLLEQ 176

Query: 184  RFDHILYTGSTAVGKIVMEAAAKHLTPVTLELGGKSPCYIDPDCDLDVACRRIAWGKYMN 363
            RFDHILYTGSTAVGKIVMEAAAKHLTPVTLELGGKSPCYIDPDCDLDVACRRIAWGKYMN
Sbjct: 177  RFDHILYTGSTAVGKIVMEAAAKHLTPVTLELGGKSPCYIDPDCDLDVACRRIAWGKYMN 236

Query: 364  CGQTCIAPDYVLCEPSLQDQVVQKMKEAVKEFYGDNIKDSPDYERIVNLRHFKRIQSLLE 543
            CGQTCIAPDYVLCEPSLQDQVVQKMKEAVKEFYGDNIKDSPDYERIVNLRHFKRIQSLLE
Sbjct: 237  CGQTCIAPDYVLCEPSLQDQVVQKMKEAVKEFYGDNIKDSPDYERIVNLRHFKRIQSLLE 296

Query: 544  GQKIAFGGETDEATRYIAPTILTDVDPEAKVMREEIFGPILPIVPVKNADEAVKFINERE 723
            GQKIAFGGETDEATRYIAPTILTDVDPEAKVMREEIFGPILPIVPVKNADEAVKFINERE
Sbjct: 297  GQKIAFGGETDEATRYIAPTILTDVDPEAKVMREEIFGPILPIVPVKNADEAVKFINERE 356

Query: 724  KPLAFYVFSRNNKLIKRMIEATSSGGVTGNDVIMHFMLSSLPFGGVGSSGMGAYHGKHSF 903
            KPLAFYVFSRNNKLIKRMIEATSSGGVTGNDVIMHFMLSSLPFGGVGSSGMGAYHGKHSF
Sbjct: 357  KPLAFYVFSRNNKLIKRMIEATSSGGVTGNDVIMHFMLSSLPFGGVGSSGMGAYHGKHSF 416

Query: 904  ETFSHLRPCLLKSLKGEGANKLRYPPNSQSKVDWAKFFFLKRVSKGR 1044
            ETFSHLRPCLLKSLKGEGANKLRYPPNSQSKVDWAKFFFLKRVSKGR
Sbjct: 417  ETFSHLRPCLLKSLKGEGANKLRYPPNSQSKVDWAKFFFLKRVSKGR 463


>ref|XP_003132084.2| PREDICTED: aldehyde dehydrogenase, dimeric NADP-preferring, partial
            [Sus scrofa].
          Length = 566

 Score =  465 bits (1197), Expect = e-131
 Identities = 214/327 (65%), Positives = 273/327 (83%)
 Frame = +1

Query: 4    LSIQPLXXXXXXXXXXXXKPSEISENTAKILAKLLPQYLDQDLYAVINGGVEETTKLLEQ 183
            L+IQP+            KPSE+SENT ++LA L+PQYLD+DLY V+ GGV ETT+LL++
Sbjct: 101  LTIQPMVGAIAAGNAVVIKPSELSENTERLLATLIPQYLDKDLYHVVTGGVPETTELLKE 160

Query: 184  RFDHILYTGSTAVGKIVMEAAAKHLTPVTLELGGKSPCYIDPDCDLDVACRRIAWGKYMN 363
            RFDHILYTGS  +GK+VM AAAKHLTPVTLELGGK+PCY+D DCDLDVACRRIAWGK+MN
Sbjct: 161  RFDHILYTGSPGIGKVVMTAAAKHLTPVTLELGGKNPCYVDKDCDLDVACRRIAWGKFMN 220

Query: 364  CGQTCIAPDYVLCEPSLQDQVVQKMKEAVKEFYGDNIKDSPDYERIVNLRHFKRIQSLLE 543
             GQTC+ PDY+LC+PS+Q+Q+V+K+K+++KEFYG++ + S DY RI+N RHF+R+  LLE
Sbjct: 221  SGQTCVGPDYILCDPSIQNQIVEKLKKSLKEFYGEDARKSRDYGRIINSRHFQRVMGLLE 280

Query: 544  GQKIAFGGETDEATRYIAPTILTDVDPEAKVMREEIFGPILPIVPVKNADEAVKFINERE 723
            GQK+A+GG  D ATRYIAPTILTDVDP+++VM+EEIFGP++PIV V + +EA++FIN+RE
Sbjct: 281  GQKVAYGGTGDAATRYIAPTILTDVDPQSQVMQEEIFGPLMPIVCVGSLEEAIRFINQRE 340

Query: 724  KPLAFYVFSRNNKLIKRMIEATSSGGVTGNDVIMHFMLSSLPFGGVGSSGMGAYHGKHSF 903
            KPLA YVFS ++K+I++MI  TSSGGVT NDVI+H  + SLPFGGVG+SGMG+YHGK SF
Sbjct: 341  KPLALYVFSLHDKVIQKMIAETSSGGVTANDVIVHITVPSLPFGGVGNSGMGSYHGKKSF 400

Query: 904  ETFSHLRPCLLKSLKGEGANKLRYPPN 984
            ETFSH R CL++ L  E   + RYPP+
Sbjct: 401  ETFSHRRSCLVRPLLNEETLRARYPPS 427


>ref|XP_003353786.1| PREDICTED: LOW QUALITY PROTEIN: aldehyde dehydrogenase family 3
            member B1-like [Sus scrofa].
          Length = 486

 Score =  375 bits (964), Expect = e-104
 Identities = 181/338 (53%), Positives = 240/338 (71%), Gaps = 3/338 (0%)
 Frame = +1

Query: 4    LSIQPLXXXXXXXXXXXXKPSEISENTAKILAKLLPQYLDQDLYAVINGGVEETTKLLEQ 183
            L++ PL            KPSEIS++T K+LA++LP+YLDQ  +AV+ GG EET +LLE 
Sbjct: 140  LTLMPLVGALAAGNCVVLKPSEISKSTEKVLAEVLPRYLDQSCFAVVLGGPEETGQLLEH 199

Query: 184  RFDHILYTGSTAVGKIVMEAAAKHLTPVTLELGGKSPCYIDPDCDLDVACRRIAWGKYMN 363
            +FD+I +TGS  VG IVM AAAKHLTPVTLELGGK+PCY+D +CD      R+A  +Y+N
Sbjct: 200  KFDYIFFTGSPRVGXIVMTAAAKHLTPVTLELGGKNPCYVDDNCDPQTVANRVALFRYLN 259

Query: 364  CGQTCIAPDYVLCEPSLQDQVVQKMKEAVKEFYGDNIKDSPDYERIVNLRHFKRIQSLLE 543
             GQTC+APDY+LC P  Q +++  ++ A+  FYGD+ + SPD  RI+N +HF+R+Q LL 
Sbjct: 260  TGQTCVAPDYILCSPETQARLLPALQSAITRFYGDDPRASPDLGRIINHKHFQRLQGLLS 319

Query: 544  GQKIAFGGETDEATRYIAPTILTDVDPEAKVMREEIFGPILPIVPVKNADEAVKFINERE 723
              ++A GG++D++ RYIAPT+L DV     VM+EEIFGPILPI+ V+  DEA+ FIN RE
Sbjct: 320  CGRVAIGGQSDDSDRYIAPTVLVDVQETEPVMQEEIFGPILPILNVRGLDEAIDFINRRE 379

Query: 724  KPLAFYVFSRNNKLIKRMIEATSSGGVTGNDVIMHFMLSSLPFGGVGSSGMGAYHGKHSF 903
            KPLA Y FS N+++I +M++ TSSG   GND  ++  L SLP GGVG+SGMG YHG+ SF
Sbjct: 380  KPLALYAFSNNSQVINQMLDRTSSGTFGGNDGFIYLTLPSLPLGGVGNSGMGRYHGEFSF 439

Query: 904  ETFSHLRPCLLKSLKGEGANKLRYPPNS---QSKVDWA 1008
            +TFSH R CLL     E  N++RYPP S   Q  + WA
Sbjct: 440  DTFSHHRACLLAHSDLEKLNEIRYPPYSGWNQQVISWA 477


>ref|XP_001925921.3| PREDICTED: aldehyde dehydrogenase family 1 member A3, partial [Sus
            scrofa].
          Length = 655

 Score =  133 bits (335), Expect = 3e-31
 Identities = 86/260 (33%), Positives = 136/260 (52%), Gaps = 8/260 (3%)
 Frame = +1

Query: 184  RFDHILYTGSTAVGKIVMEAAAK-HLTPVTLELGGKSPCYIDPDCDLDVACRRIAWGKYM 360
            + + I +TGST VGK+V EAA++ +L  VTLELGGK+PC +  D DLD+A      G + 
Sbjct: 392  QINKIAFTGSTEVGKLVKEAASRSNLKRVTLELGGKNPCIVCADADLDLAVECAHQGVFF 451

Query: 361  NCGQTCIAPDYVLCEPSLQDQVVQKMKE-AVKEFYGDNIKDSPDYERIVNLRHFKRIQSL 537
            N GQ C A   V  E  +  + V++  E A K   GD      +    ++ + F +I  L
Sbjct: 452  NQGQCCTAASRVFVEEQVYSEFVKRSVEYAKKRPVGDPFDVRTEQGPQIDQKQFNKILDL 511

Query: 538  LE-----GQKIAFGGET-DEATRYIAPTILTDVDPEAKVMREEIFGPILPIVPVKNADEA 699
            +E     G K+  GG   ++   +I PT+ ++V    ++ +EEIFGP+ PI+  KN +E 
Sbjct: 512  IESGKKEGAKLECGGSAMEDRGLFIKPTVFSEVTDTMRIAKEEIFGPVQPILKFKNIEEV 571

Query: 700  VKFINEREKPLAFYVFSRNNKLIKRMIEATSSGGVTGNDVIMHFMLSSLPFGGVGSSGMG 879
            +K  N  E  L   VF++N     ++  A  SG V  N    + + +  PFGG   SG G
Sbjct: 572  IKRANSLEYGLTAAVFTKNLDKALKLASALESGTVWIN--CYNAIYAQAPFGGFKMSGNG 629

Query: 880  AYHGKHSFETFSHLRPCLLK 939
               G+++   ++ ++   +K
Sbjct: 630  RELGEYALAEYTEVKTVTIK 649


>ref|XP_001924895.1| PREDICTED: 4-trimethylaminobutyraldehyde dehydrogenase [Sus scrofa].
          Length = 596

 Score =  119 bits (297), Expect = 8e-27
 Identities = 89/305 (29%), Positives = 150/305 (49%), Gaps = 16/305 (5%)
 Frame = +1

Query: 58   KPSEISENTAKILAKLLPQY-LDQDLYAVINGGVEETTKLLEQRFD--HILYTGSTAVGK 228
            KPS  +  +  +LA++  +  +   L+ V+ GG   T +LL Q  D   I +TGS   G 
Sbjct: 282  KPSPFTPLSVLLLAEIYTEAGVPPGLFNVVQGGAT-TGQLLCQHRDVAKISFTGSVPTGS 340

Query: 229  IVMEAAAKHLTPVTLELGGKSPCYIDPDCDLDVACRRIAWGKYMNCGQTCIAPDYVLCEP 408
             +ME +AK + PVTLELGGKSP  I  DCD+  A +      ++  G+ C     V  + 
Sbjct: 341  KIMEMSAKGIKPVTLELGGKSPLIIFSDCDMGNAVKGALMANFLTQGEVCCNGTRVFVQK 400

Query: 409  SLQDQVVQK-MKEAVKEFYGDNIKDSPDYERIVNLRHFKRIQSLL-----EGQKIAFGGE 570
             + D+  ++ +K+  +   GD + +      ++N  H +RI   +     +G K+  GG+
Sbjct: 401  EILDKFTEEVVKQTQRIKIGDPLLEDTRMGPLINRPHLERILGFVKVAKEQGAKVLCGGD 460

Query: 571  ----TDEATR---YIAPTILTDVDPEAKVMREEIFGPILPIVPVKNADEAVKFINEREKP 729
                 D   +   Y+ P +LT+   +   ++EEIFGP++ I+      E V+  N+    
Sbjct: 461  LYVPEDPKLKEGYYMRPCVLTNCRDDMTCVKEEIFGPVMSILSFDTEAEVVERANDTTFG 520

Query: 730  LAFYVFSRNNKLIKRMIEATSSGGVTGNDVIMHFMLSSLPFGGVGSSGMGAYHGKHSFET 909
            LA  VF+R+ +   R++    +G    N+   +     LPFGG   SG G  +G+ + E 
Sbjct: 521  LAAGVFTRDIQRAHRVVAELQAGMCFINN--YNVSPVELPFGGYKKSGFGRENGRVTIEY 578

Query: 910  FSHLR 924
            +S L+
Sbjct: 579  YSQLK 583


>ref|XP_003121238.2| PREDICTED: aldehyde dehydrogenase family 8 member A1-like [Sus
            scrofa].
          Length = 483

 Score =  114 bits (284), Expect = 3e-25
 Identities = 82/311 (26%), Positives = 153/311 (49%), Gaps = 17/311 (5%)
 Frame = +1

Query: 58   KPSEISENTAKILAKLLPQY-LDQDLYAVINGGVEETTKLL--EQRFDHILYTGSTAVGK 228
            KPSE++  TA ++ KLL +  +   +  ++ G      + L        I +TGS    +
Sbjct: 174  KPSELTSVTAWMMCKLLEKAGVPPGVVNIVFGTGPRAGEALVSHPEVPLISFTGSQPTAE 233

Query: 229  IVMEAAAKHLTPVTLELGGKSPCYIDPDCDLDVACRRIAWGKYMNCGQTCIAPDYVLCEP 408
             + + +A H   ++LELGGK+P  I  D +L+          + N G+ C+    +  + 
Sbjct: 234  RITQLSAPHCKKLSLELGGKNPAIIFEDANLEECVPTTVRSSFANQGEICLCTSRIFVQR 293

Query: 409  SLQDQVVQKMKEAVKEF-YGDNIKDSPDYERIVNLRHFKRIQSL-----LEGQKIAFGGE 570
            S+  + +++  +A + +  G     S     +++  H ++++S      LEG +I  G  
Sbjct: 294  SIYSEFLKRFVDATRMWKVGIPSDPSASMGALISKAHLEKVRSYIKKARLEGAQILCGEG 353

Query: 571  TDEATR--------YIAPTILTDVDPEAKVMREEIFGPILPIVPVKNADEAVKFINEREK 726
             D+           ++ PT++TD+  E+  M+EEIFGP+  +VP  + +E ++  N  + 
Sbjct: 354  VDKLNLPPRNQGGYFMLPTVITDIKDESCCMKEEIFGPVTCVVPFDSEEEVIQRANSVKY 413

Query: 727  PLAFYVFSRNNKLIKRMIEATSSGGVTGNDVIMHFMLSSLPFGGVGSSGMGAYHGKHSFE 906
             LA  V+S N   + R+ +   SG V  N  ++  +  +LPFGG+ SSG+G    K S+E
Sbjct: 414  GLAATVWSGNVGRVHRVAKKLQSGLVWTNCWLIREL--NLPFGGMKSSGVGREGAKDSYE 471

Query: 907  TFSHLRPCLLK 939
             F+ ++   +K
Sbjct: 472  FFTEVKTVTVK 482


>ref|XP_003353634.1| PREDICTED: aldehyde dehydrogenase X, mitochondrial [Sus scrofa].
          Length = 517

 Score =  112 bits (281), Expect = 6e-25
 Identities = 76/256 (29%), Positives = 125/256 (48%), Gaps = 8/256 (3%)
 Frame = +1

Query: 196  ILYTGSTAVGKIVMEAAA-KHLTPVTLELGGKSPCYIDPDCDLDVACRRIAWGKYMNCGQ 372
            + +TGST VG ++ +AA   +L  VTLELGGKSP  +  D D+D A  +     + N GQ
Sbjct: 258  VAFTGSTEVGHLIQKAAGDSNLKRVTLELGGKSPSIVLADADMDHAVEQCHEALFFNMGQ 317

Query: 373  TCIAPDYVLCEPSLQDQVVQK-MKEAVKEFYGDNIKDSPDYERIVNLRHFKRIQSLL--- 540
             C A      E S+ D+ +++ +++A +   G+  +        VN   F+RI   +   
Sbjct: 318  CCCAGSRTFVEESIYDEFLERTVEKAKRRKVGNPFELDTQQGPQVNKEQFERILGYIQLG 377

Query: 541  --EGQKIAFGGET-DEATRYIAPTILTDVDPEAKVMREEIFGPILPIVPVKNADEAVKFI 711
              EG K+  GGE   E   +I PT+   V  + ++ +EEIFGP+ P+   K  +E ++  
Sbjct: 378  QKEGAKLLCGGERFGERGFFIKPTVFGGVQDDMRIAKEEIFGPVQPLFKFKRIEEVIERA 437

Query: 712  NEREKPLAFYVFSRNNKLIKRMIEATSSGGVTGNDVIMHFMLSSLPFGGVGSSGMGAYHG 891
            N     LA  VF+++        +A  +G V  N    + +    PFGG   SG G   G
Sbjct: 438  NNTRYGLAAAVFTQDLDKAMYFTQALQAGTVWVN--TYNIVTCHTPFGGFKESGNGRELG 495

Query: 892  KHSFETFSHLRPCLLK 939
            +   + ++ ++   +K
Sbjct: 496  EDGLKAYTEVKTVTIK 511


>ref|XP_003353633.1| PREDICTED: aldehyde dehydrogenase X, mitochondrial-like [Sus scrofa].
          Length = 517

 Score =  112 bits (281), Expect = 6e-25
 Identities = 76/256 (29%), Positives = 125/256 (48%), Gaps = 8/256 (3%)
 Frame = +1

Query: 196  ILYTGSTAVGKIVMEAAA-KHLTPVTLELGGKSPCYIDPDCDLDVACRRIAWGKYMNCGQ 372
            + +TGST VG ++ +AA   +L  VTLELGGKSP  +  D D+D A  +     + N GQ
Sbjct: 258  VAFTGSTEVGHLIQKAAGDSNLKRVTLELGGKSPSIVLADADMDHAVEQCHEALFFNMGQ 317

Query: 373  TCIAPDYVLCEPSLQDQVVQK-MKEAVKEFYGDNIKDSPDYERIVNLRHFKRIQSLL--- 540
             C A      E S+ D+ +++ +++A +   G+  +        VN   F+RI   +   
Sbjct: 318  CCCAGSRTFVEESIYDEFLERTVEKAKRRKVGNPFELDTQQGPQVNKEQFERILGYIQLG 377

Query: 541  --EGQKIAFGGET-DEATRYIAPTILTDVDPEAKVMREEIFGPILPIVPVKNADEAVKFI 711
              EG K+  GGE   E   +I PT+   V  + ++ +EEIFGP+ P+   K  +E ++  
Sbjct: 378  QKEGAKLLCGGERFGERGFFIKPTVFGGVQDDMRIAKEEIFGPVQPLFKFKRIEEVIERA 437

Query: 712  NEREKPLAFYVFSRNNKLIKRMIEATSSGGVTGNDVIMHFMLSSLPFGGVGSSGMGAYHG 891
            N     LA  VF+++        +A  +G V  N    + +    PFGG   SG G   G
Sbjct: 438  NNTRYGLAAAVFTQDLDKAMYFTQALQAGTVWVN--TYNIVTCHTPFGGFKESGNGRELG 495

Query: 892  KHSFETFSHLRPCLLK 939
            +   + ++ ++   +K
Sbjct: 496  EDGLKAYTEVKTVTIK 511


>ref|XP_001926622.3| PREDICTED: aldehyde dehydrogenase family 1 member L2, mitochondrial
            [Sus scrofa].
          Length = 923

 Score =  110 bits (274), Expect = 4e-24
 Identities = 89/307 (28%), Positives = 149/307 (48%), Gaps = 13/307 (4%)
 Frame = +1

Query: 58   KPSEISENTAKILAKL-LPQYLDQDLYAVINGGVEETTKLLEQRFD--HILYTGSTAVGK 228
            KP++++  TA   A+L +     + +  +I G      + L +  D   + +TGST +GK
Sbjct: 618  KPAQVTPLTALKFAELSVKAGFPKGVINIIPGSGGIAGQRLSEHPDIRKLGFTGSTPIGK 677

Query: 229  IVMEAAA-KHLTPVTLELGGKSPCYIDPDCDLDVACRRIAWGKYMNCGQTCIAPDYVLCE 405
             +M++ A  +L  V+LELGGKSP  I  DC+LD A R      + N G+ CIA   +  E
Sbjct: 678  QIMKSCAVSNLKKVSLELGGKSPLLIFNDCELDKAVRMGMGAVFFNKGENCIAAGRLFVE 737

Query: 406  PSLQDQVVQKMKEAVKEF-YGDNIKDSPDYERIVNLRHFKRI-----QSLLEGQKIAFGG 567
             S+ D+ V ++ E +K+   GD +  S D+    +  H +++       + EG  + +GG
Sbjct: 738  ESIHDEFVTRVVEEIKKMKIGDPLDRSTDHGPQNHKAHLEKLLQYCEAGVKEGATLVYGG 797

Query: 568  -ETDEATRYIAPTILTDVDPEAKVMREEIFGPILPIVPVKNA--DEAVKFINEREKPLAF 738
             +      ++ PT+ TDV+    + +EE FGPI+ I   +N   D  ++  N  E  LA 
Sbjct: 798  RQVQRPGFFMEPTVFTDVEDHMYLAKEESFGPIMVISKFRNGDIDGVLERANNTEYGLAS 857

Query: 739  YVFSRNNKLIKRMIEATSSGGVTGNDVIMHFMLSSLPFGGVGSSGMGAYHGKHSFETFSH 918
             VF+R+      + E   +G V  N      +  + PFGG   SG G   G+ +   +  
Sbjct: 858  GVFTRDINKAMYVSEKLEAGTVFINTYNKTDV--AAPFGGFKQSGFGKDLGEEALNEYLR 915

Query: 919  LRPCLLK 939
             +   L+
Sbjct: 916  TKTVTLE 922


>ref|XP_003359162.1| PREDICTED: aldehyde dehydrogenase, mitochondrial-like isoform 2
           [Sus scrofa].
          Length = 474

 Score =  104 bits (260), Expect = 2e-22
 Identities = 72/258 (27%), Positives = 121/258 (46%), Gaps = 8/258 (3%)
 Frame = +1

Query: 190 DHILYTGSTAVGKIVMEAAAK-HLTPVTLELGGKSPCYIDPDCDLDVACRRIAWGKYMNC 366
           D + +TGST VG ++  AA K +L  VTLELGGKSP  I  D D+D A  +  +  + N 
Sbjct: 213 DKVAFTGSTEVGHLIQVAAGKSNLKRVTLELGGKSPNIIMSDADMDWAVEQAHFALFFNQ 272

Query: 367 GQTCIAPDYVLCEPSLQDQVVQK-MKEAVKEFYGDNIKDSPDYERIVNLRHFKRIQSLLE 543
           GQ C A      +  +  + V++ +  A     G+      +    ++   FK+I   ++
Sbjct: 273 GQCCCAGSRTFVQEDIYAEFVERSVARARSRVVGNPFDSRTEQGPQIDETQFKKILGYIK 332

Query: 544 GQK------IAFGGETDEATRYIAPTILTDVDPEAKVMREEIFGPILPIVPVKNADEAVK 705
             K      +  GG   +   +I PT+  DV     + +EEIFGP++ I+  K  +E + 
Sbjct: 333 SGKEEGAKLLCGGGAAADRGYFIQPTVFGDVQDGMTIAKEEIFGPVMQILKFKTIEEVIG 392

Query: 706 FINEREKPLAFYVFSRNNKLIKRMIEATSSGGVTGNDVIMHFMLSSLPFGGVGSSGMGAY 885
             N  +  LA  VF+++      + +A  +G V  N        +  PFGG   SG G  
Sbjct: 393 RANNSKYGLAAAVFTKDLDKANYLSQALQAGTVWVN--CYDVFGAQSPFGGYKLSGSGRE 450

Query: 886 HGKHSFETFSHLRPCLLK 939
            G++  + ++ ++   +K
Sbjct: 451 LGEYGLQAYTEVKTVTVK 468


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 48,975,864
Number of extensions: 1451516
Number of successful extensions: 7894
Number of sequences better than 1.0e-05: 15
Number of HSP's gapped: 7775
Number of HSP's successfully gapped: 15
Length of query: 661
Length of database: 11,343,932
Length adjustment: 105
Effective length of query: 556
Effective length of database: 8,729,747
Effective search space: 4853739332
Effective search space used: 4853739332
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007407
         (1984 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr12                                                        1659   0.0  

>Sscrofa_Chr12 
||          Length = 63588571

 Score = 1659 bits (837), Expect = 0.0
 Identities = 875/888 (98%), Gaps = 2/888 (0%)
 Strand = Plus / Plus

                                                                            
Query: 1097     aggctggataccgctgaaggagctgcctgtgctgccgacgccttgtctcttccatttttc 1156
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62607744 aggctggataccgctgaaggagctgcctgtgctgccgacgccttgtctcttccatttttc 62607803

                                                                            
Query: 1157     tattaaacagctaatgaaccaataatttttaaatcctaacaaaaatagtagaagatacac 1216
                |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 62607804 tattaaacagctaatgaaccaataatttttaaatcctaccaaaaatagtagaagatacac 62607863

                                                                            
Query: 1217     aaacgcaccgtgatggaacctgagagtcactgccactcactgtctttccagccagagccc 1276
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62607864 aaacgcaccgtgatggaacctgagagtcactgccactcactgtctttccagccagagccc 62607923

                                                                            
Query: 1277     cacgcccccacccagggctaagggtcctgggaggaccccatcccgctgggtcccgggccc 1336
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62607924 cacgcccccacccagggctaagggtcctgggaggaccccatcccgctgggtcccgggccc 62607983

                                                                            
Query: 1337     tggagccctgggctggggagcagcgcccactnnnnnnnnnngcgaagcatcacccggaaa 1396
                |||||||||||||||||||||||||||||||          |||||||||||||||||||
Sbjct: 62607984 tggagccctgggctggggagcagcgcccactccccccccc-gcgaagcatcacccggaaa 62608042

                                                                            
Query: 1397     ccttccagagccagccccgccctggtttccaggccttcccagcctccattccaggttcga 1456
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62608043 ccttccagagccagccccgccctggtttccaggccttcccagcctccattccaggttcga 62608102

                                                                            
Query: 1457     ggccctcgagctagggtcgggctggggtccccgtcgctcaccattgagacttgaagacca 1516
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62608103 ggccctcgagctagggtcgggctggggtccccgtcgctcaccattgagacttgaagacca 62608162

                                                                            
Query: 1517     gacccgcgggcatctccctttctcgtctctgctccgtcctgtcctgtgcttggggtgcga 1576
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62608163 gacccgcgggcatctccctttctcgtctctgctccgtcctgtcctgtgcttggggtgcga 62608222

                                                                            
Query: 1577     cggtcccttgtggctgtccacactcggtttccgacgtcgctagagcgtccagtgcgtcct 1636
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62608223 cggtcccttgtggctgtccacactcggtttccgacgtcgctagagcgtccagtgcgtcct 62608282

                                                                            
Query: 1637     aaggcttcctggaagacagcggccaacgcgtgcacgcggctttcatctgccctcctcaag 1696
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62608283 aaggcttcctggaagacagcggccaacgcgtgcacgcggctttcatctgccctcctcaag 62608342

                                                                            
Query: 1697     tggagctgctgcagaatttaaaccctaacgtgcattttaacgctgtaacaaaagtgcttg 1756
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62608343 tggagctgctgcagaatttaaaccctaacgtgcattttaacgctgtaacaaaagtgcttg 62608402

                                                                            
Query: 1757     taaactctgcgaggacagcgcgggccccacggaaggggacagaagacaggaagcgccggg 1816
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62608403 taaactctgcgaggacagcgcgggccccacggaaggggacagaagacaggaagcgccggg 62608462

                                                                            
Query: 1817     gttctttagccaaatggaaagtctcacaaagagcctggggcgggtcctggccacaggccc 1876
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 62608463 gttctttagccaaatggaaagtctcacaaagagcctggggcgggtcctggccacagg-cc 62608521

                                                                            
Query: 1877     ccacttcctccacccccaacccctacacgcacgcatgcacgtgcttggcaaaatccacca 1936
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62608522 ccacttcctccacccccaacccctacacgcacgcatgcacgtgcttggcaaaatccacca 62608581

                                                                
Query: 1937     ctgaatcggcaaatgtgactcactttacaagacgtataattcactctg 1984
                ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 62608582 ctgaatcggcaaatgtgactcactttacaggacgtataattcactctg 62608629



 Score =  430 bits (217), Expect = e-117
 Identities = 231/238 (97%)
 Strand = Plus / Plus

                                                                            
Query: 862      ggttccagtgggatgggagcttatcacggcaagcacagcttcgaaaccttctcccacctc 921
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62603907 ggttccagtgggatgggagcttatcacggcaagcacagcttcgaaaccttctcccacctc 62603966

                                                                            
Query: 922      cggccctgcctgttaaaaagtttgaagggggaaggtgccaacaagctcaggtannnnnnn 981
                |||||||||||||||||||||||||||||||||||||||||||||||||||||       
Sbjct: 62603967 cggccctgcctgttaaaaagtttgaagggggaaggtgccaacaagctcaggtaccccccc 62604026

                                                                            
Query: 982      aacagccagtccaaggtggactgggccaagttcttcttcttgaagcgggtcagcaaaggg 1041
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62604027 aacagccagtccaaggtggactgggccaagttcttcttcttgaagcgggtcagcaaaggg 62604086

                                                                          
Query: 1042     agactgggcctcctgttcctcgcgctgctgggcgtcgtgctggccgtgctcctcaagg 1099
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62604087 agactgggcctcctgttcctcgcgctgctgggcgtcgtgctggccgtgctcctcaagg 62604144



 Score =  369 bits (186), Expect = 4e-99
 Identities = 203/211 (96%)
 Strand = Plus / Plus

                                                                            
Query: 125      aggacctgtacgctgtcatcaatggcggcgtcgaggaaaccacgaagctgctggagcagc 184
                ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 62596294 aggacctgtacgctgtcatcaatggcggcgttgaggaaaccacgaagctgctggagcagc 62596353

                                                                            
Query: 185      gatttgaccacattctctacacgggaagcaccgcggtggggaagattgtcatggaagccg 244
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62596354 gatttgaccacattctctacacgggaagcaccgcggtggggaagattgtcatggaagccg 62596413

                                                                            
Query: 245      ctgccaagcatttgacccctgtgacccttgaactnnnnnnnaagagcccgtgttacattg 304
                ||||||||||||||||||||||||||||||||||       |||||||||||||||||||
Sbjct: 62596414 ctgccaagcatttgacccctgtgacccttgaactgggggggaagagcccgtgttacattg 62596473

                                               
Query: 305      acccagactgtgacctggacgtcgcctgcag 335
                |||||||||||||||||||||||||||||||
Sbjct: 62596474 acccagactgtgacctggacgtcgcctgcag 62596504



 Score =  335 bits (169), Expect = 6e-89
 Identities = 169/169 (100%)
 Strand = Plus / Plus

                                                                            
Query: 594      agccccaacaatacttaccgatgttgatcctgaagccaaggtgatgcgagaagagatttt 653
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62600524 agccccaacaatacttaccgatgttgatcctgaagccaaggtgatgcgagaagagatttt 62600583

                                                                            
Query: 654      tggacccattcttccaatagtgcctgtgaagaatgcagacgaagccgtaaaattcataaa 713
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62600584 tggacccattcttccaatagtgcctgtgaagaatgcagacgaagccgtaaaattcataaa 62600643

                                                                 
Query: 714      cgaacgtgaaaagcccctggctttctacgtattttctcgtaacaataag 762
                |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62600644 cgaacgtgaaaagcccctggctttctacgtattttctcgtaacaataag 62600692



 Score =  278 bits (140), Expect = 1e-71
 Identities = 143/144 (99%)
 Strand = Plus / Plus

                                                                            
Query: 452      aggaattttatggagataatataaaagactctccggactatgaaaggatcgtcaatctcc 511
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62599386 aggaattttatggagataatataaaagactctccggactatgaaaggatcgtcaatctcc 62599445

                                                                            
Query: 512      gtcatttcaagaggatacagagcctgctcgagggacagaagatagccttcggtggggaga 571
                |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 62599446 gtcatttcaagaggatacagagtctgctcgagggacagaagatagccttcggtggggaga 62599505

                                        
Query: 572      cggacgaggccactcgctacatag 595
                ||||||||||||||||||||||||
Sbjct: 62599506 cggacgaggccactcgctacatag 62599529



 Score =  242 bits (122), Expect = 6e-61
 Identities = 122/122 (100%)
 Strand = Plus / Plus

                                                                            
Query: 333      cagacgcatcgcctgggggaagtacatgaactgcgggcagacctgcatcgcccccgacta 392
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62597511 cagacgcatcgcctgggggaagtacatgaactgcgggcagacctgcatcgcccccgacta 62597570

                                                                            
Query: 393      cgtcctctgcgagccgtccctccaggaccaggtcgtgcagaagatgaaggaagccgtgaa 452
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62597571 cgtcctctgcgagccgtccctccaggaccaggtcgtgcagaagatgaaggaagccgtgaa 62597630

                  
Query: 453      gg 454
                ||
Sbjct: 62597631 gg 62597632



 Score =  206 bits (104), Expect = 3e-50
 Identities = 104/104 (100%)
 Strand = Plus / Plus

                                                                            
Query: 761      agctcatcaagcggatgatcgaggcgacgtcgagcgggggtgtcacgggcaacgacgtca 820
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62601941 agctcatcaagcggatgatcgaggcgacgtcgagcgggggtgtcacgggcaacgacgtca 62602000

                                                            
Query: 821      tcatgcacttcatgctcagctccctgcccttcggaggcgtgggt 864
                ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62602001 tcatgcacttcatgctcagctccctgcccttcggaggcgtgggt 62602044



 Score =  176 bits (89), Expect = 3e-41
 Identities = 89/89 (100%)
 Strand = Plus / Plus

                                                                            
Query: 39       aggaaacgcggtgattatcaaaccttccgaaatcagcgaaaatacagccaagatcttggc 98
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62594875 aggaaacgcggtgattatcaaaccttccgaaatcagcgaaaatacagccaagatcttggc 62594934

                                             
Query: 99       gaagctcctcccccagtatttagaccagg 127
                |||||||||||||||||||||||||||||
Sbjct: 62594935 gaagctcctcccccagtatttagaccagg 62594963



 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 39/39 (100%)
 Strand = Plus / Plus

                                                       
Query: 3        tctctccatccagcctctgataggagccatcgctgcagg 41
                |||||||||||||||||||||||||||||||||||||||
Sbjct: 62594194 tctctccatccagcctctgataggagccatcgctgcagg 62594232



 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 61/69 (88%)
 Strand = Plus / Minus

                                                                            
Query: 333      cagacgcatcgcctgggggaagtacatgaactgcgggcagacctgcatcgcccccgacta 392
                |||||||||||||||||| |||| ||||||| |||| ||||||||| | | |||||||||
Sbjct: 62642203 cagacgcatcgcctggggcaagttcatgaacagcggccagacctgcgtgggccccgacta 62642144

                         
Query: 393      cgtcctctg 401
                | |||||||
Sbjct: 62642143 catcctctg 62642135


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 49,844,371
Number of extensions: 374
Number of successful extensions: 374
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 371
Number of HSP's successfully gapped: 11
Length of query: 1984
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1962
Effective length of database: 2,808,408,574
Effective search space: 5510097622188
Effective search space used: 5510097622188
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)